Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Euteleostomi	ANCESTRAL SPECIES	438											ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25
Sarcopterygii	ANCESTRAL SPECIES	141	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT00940000177628	ENSGT00940000160853	ENSGT01030000234826	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000157384	ENSGT00940000160019	ENSGT00940000164175.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00940000164221.a.b	ENSGT00940000164221.a.a	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.a ##34
Tetrapoda	ANCESTRAL SPECIES	47	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234826	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00940000164175.a.a	ENSGT00940000164175.a.b	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.a ##34
Amniota	ANCESTRAL SPECIES	13	ENSGT00940000160853	ENSGT01030000234826	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00940000164175.a.a	ENSGT00940000164175.a.b	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000158447	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000158159	ENSGT00550000075086	ENSGT00950000182923.B.a	ENSGT00950000182944.B.a	ENSGT00390000013662	ENSGT00940000161309	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000168062	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Theria	ANCESTRAL SPECIES	5	ENSGT00940000158447	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000158159	ENSGT00550000075086	ENSGT00950000182923.B.a	ENSGT00950000182944.B.a	ENSGT00390000013662	ENSGT00940000161309	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Eutheria	ANCESTRAL SPECIES	5	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00560000078510	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00940000153783.b.b.c.b ##7	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Glires	ANCESTRAL SPECIES	2	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00940000153783.b.b.c.b ##7	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00940000153783.b.b.c.b ##7	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00940000153783.b.b.c.b ##7	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Marmotini	ANCESTRAL SPECIES	57	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Alpin marmot	MODERN SPECIES	65	EIF4A2 (ENSMMMG00000009054) #7	RFC4 (ENSMMMG00000009263) #8	ADIPOQ (ENSMMMG00000009299) #9	ENSMMMG00000009302 #10	ST6GAL1 (ENSMMMG00000009312) #11	RTP1 (ENSMMMG00000009324) #12	MASP1 (ENSMMMG00000009332) #13	ENSMMMG00000009397 #14	ENSMMMG00000009405 #15	SST (ENSMMMG00000009413) #16	RTP2 (ENSMMMG00000009435) #17	BCL6 (ENSMMMG00000009441) #18	ENSMMMG00000009454 #19	LPP (ENSMMMG00000009476) #20	TPRG1 (ENSMMMG00000009493) #21	TP63 (ENSMMMG00000009524) #22	P3H2 (ENSMMMG00000010050) #23	CLDN1 (ENSMMMG00000010077) #24	CLDN16 (ENSMMMG00000010089) #25	TMEM207 (ENSMMMG00000010116) #26	IL1RAP (ENSMMMG00000010137) #27	GMNC (ENSMMMG00000010205) #28	OSTN (ENSMMMG00000010224) #29	UTS2B (ENSMMMG00000010236) #30	CCDC50 (ENSMMMG00000010258) #31	ENSMMMG00000010324 #32	ENSMMMG00000010336 #33	MB21D2 (ENSMMMG00000010348) #34	PLAAT1 (ENSMMMG00000010364) #35	ATP13A5 (ENSMMMG00000010381) #36	ATP13A4 (ENSMMMG00000010493) #37
Marmotini_b	ANCESTRAL SPECIES	79	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27
Squirrel	MODERN SPECIES	178	FETUB (ENSSTOG00000012584)	HRG (ENSSTOG00000012587)	KNG1 (ENSSTOG00000027812)	ENSSTOG00000012601 #7	ENSSTOG00000012616 #8	ADIPOQ (ENSSTOG00000016020) #9	ST6GAL1 (ENSSTOG00000015751) #11	RTP1 (ENSSTOG00000010261) #12	MASP1 (ENSSTOG00000010265) #13	ENSSTOG00000010275 #15	SST (ENSSTOG00000015070) #16	RTP2 (ENSSTOG00000025837) #17	BCL6 (ENSSTOG00000000843) #18	LPP (ENSSTOG00000004791) #20	TPRG1 (ENSSTOG00000013052) #21	TP63 (ENSSTOG00000013771) #22	P3H2 (ENSSTOG00000006501) #23	CLDN1 (ENSSTOG00000009637) #24	CLDN16 (ENSSTOG00000008723) #25
Arctic ground squirrel	MODERN SPECIES	67	ENSUPAG00010001535	EIF4A2 (ENSUPAG00010001415) #7	RFC4 (ENSUPAG00010001386) #8	ADIPOQ (ENSUPAG00010001377) #9	ST6GAL1 (ENSUPAG00010001354) #11	RTP1 (ENSUPAG00010001348) #12	ENSUPAG00010001334 #14	MASP1 (ENSUPAG00010001243) #13	ENSUPAG00010001238 #15	SST (ENSUPAG00010001221) #16	RTP2 (ENSUPAG00010001211) #17	BCL6 (ENSUPAG00010001190) #18	ENSUPAG00010001184 #19	LPP (ENSUPAG00010001116) #20	TPRG1 (ENSUPAG00010001096) #21	TP63 (ENSUPAG00010000340) #22	P3H2 (ENSUPAG00010000290) #23	CLDN1 (ENSUPAG00010000275) #24	CLDN16 (ENSUPAG00010000249) #25	TMEM207 (ENSUPAG00010000237) #26	IL1RAP (ENSUPAG00010000152) #27
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005008819 #7	RFC4 (ENSSVLG00005008782) #8	ENSSVLG00005008759	ADIPOQ (ENSSVLG00005008730) #9	ST6GAL1 (ENSSVLG00005008652) #11	RTP1 (ENSSVLG00005008628) #12	MASP1 (ENSSVLG00005008564) #13	ENSSVLG00005008533 #15	SST (ENSSVLG00005008514) #16	RTP2 (ENSSVLG00005008485) #17	ENSSVLG00005008392 #18	ENSSVLG00005008361	LPP (ENSSVLG00005008318) #20	TPRG1 (ENSSVLG00005008266) #21	ENSSVLG00005008233	TP63 (ENSSVLG00005007416) #22	P3H2 (ENSSVLG00005006989) #23	CLDN1 (ENSSVLG00005006941) #24	CLDN16 (ENSSVLG00005006918) #25	TMEM207 (ENSSVLG00005006891) #26	IL1RAP (ENSSVLG00005006739) #27	GMNC (ENSSVLG00005006667) #28	OSTN (ENSSVLG00005006607) #29	UTS2B (ENSSVLG00005006554) #30	ENSSVLG00005006532	CCDC50 (ENSSVLG00005006494) #31	FGF12 (ENSSVLG00005006414) #33	MB21D2 (ENSSVLG00005006368) #34	ENSSVLG00005006347	PLAAT1 (ENSSVLG00005006328) #35	ATP13A5 (ENSSVLG00005006143) #36
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00950000182930.A.b	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00950000182930.A.b	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT01100000266402	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Guinea pig	MODERN SPECIES	7	FETUB (ENSCPOG00000011207)	HRG (ENSCPOG00000025939)	KNG1 (ENSCPOG00000012757)	ENSCPOG00000011183 ##7	RFC4 (ENSCPOG00000011191) #8	ADIPOQ (ENSCPOG00000036737) #9	ST6GAL1 (ENSCPOG00000001200) #11	RTP1 (ENSCPOG00000001203) #12	MASP1 (ENSCPOG00000015723) #13	SST (ENSCPOG00000009662) #16	RTP2 (ENSCPOG00000009665) #17	BCL6 (ENSCPOG00000004090) #18	ENSCPOG00000033304	LPP (ENSCPOG00000015584) #20	TPRG1 (ENSCPOG00000007437) #21	TP63 (ENSCPOG00000014770) #22	P3H2 (ENSCPOG00000004329) #23	CLDN1 (ENSCPOG00000037018) #24	CLDN16 (ENSCPOG00000008643) #25	IL1RAP (ENSCPOG00000008554) #27	GMNC (ENSCPOG00000019517) #28	OSTN (ENSCPOG00000024963) #29	CCDC50 (ENSCPOG00000013365) #31	FGF12 (ENSCPOG00000038518) #33	MB21D2 (ENSCPOG00000011028) #34	PLAAT1 (ENSCPOG00000008871) #35	ATP13A5 (ENSCPOG00000008873) #36	ATP13A4 (ENSCPOG00000008886) #37	OPA1 (ENSCPOG00000005925)	HES1 (ENSCPOG00000036195)	CPN2 (ENSCPOG00000037149)
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00950000182930.A.b	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT01100000266402	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Degu	MODERN SPECIES	169	DNAJB11 (ENSODEG00000001870)	AHSG (ENSODEG00000001885)	HRG (ENSODEG00000001904)	KNG1 (ENSODEG00000001927)	RFC4 (ENSODEG00000001999) #8	ADIPOQ (ENSODEG00000002012) #9	ST6GAL1 (ENSODEG00000002040) #11	RTP1 (ENSODEG00000000396) #12	MASP1 (ENSODEG00000000434) #13	ENSODEG00000000479	SST (ENSODEG00000000486) #16	RTP2 (ENSODEG00000000495) #17	BCL6 (ENSODEG00000000516) #18	LPP (ENSODEG00000000601) #20	TPRG1 (ENSODEG00000000645) #21	TP63 (ENSODEG00000000698) #22	P3H2 (ENSODEG00000000751) #23	CLDN1 (ENSODEG00000000775) #24	CLDN16 (ENSODEG00000000787) #25	TMEM207 (ENSODEG00000000814) #26	IL1RAP (ENSODEG00000000880) #27	ENSODEG00000000947	GMNC (ENSODEG00000000968) #28	OSTN (ENSODEG00000000984) #29	CCDC50 (ENSODEG00000001028) #31	ENSODEG00000018632	FGF12 (ENSODEG00000000898) #33	ENSODEG00000000915 #34	PLAAT1 (ENSODEG00000000928) #35	ATP13A5 (ENSODEG00000000942) #36
Long-tailed chinchilla	MODERN SPECIES	127	FETUB (ENSCLAG00000015483)	HRG (ENSCLAG00000015542)	ENSCLAG00000017074	EIF4A2 (ENSCLAG00000014891) ##7	RFC4 (ENSCLAG00000014582) #8	ADIPOQ (ENSCLAG00000016452) #9	ST6GAL1 (ENSCLAG00000015941) #11	RTP1 (ENSCLAG00000013765) #12	MASP1 (ENSCLAG00000012518) #13	SST (ENSCLAG00000015832) #16	RTP2 (ENSCLAG00000014964) #17	ENSCLAG00000017951	BCL6 (ENSCLAG00000012339) #18	LPP (ENSCLAG00000015949) #20	TPRG1 (ENSCLAG00000013300) #21	TP63 (ENSCLAG00000012538) #22	P3H2 (ENSCLAG00000012801) #23	CLDN1 (ENSCLAG00000013178) #24	CLDN16 (ENSCLAG00000012605) #25	IL1RAP (ENSCLAG00000012363) #27	GMNC (ENSCLAG00000011473) #28	OSTN (ENSCLAG00000013977) #29	CCDC50 (ENSCLAG00000014114) #31	FGF12 (ENSCLAG00000011409) #33	MB21D2 (ENSCLAG00000014657) #34	PLAAT1 (ENSCLAG00000012403) #35	ATP13A5 (ENSCLAG00000012908) #36	ATP13A4 (ENSCLAG00000012524) #37	OPA1 (ENSCLAG00000012734)	HES1 (ENSCLAG00000015321)	CPN2 (ENSCLAG00000018106)
Naked mole-rat female	MODERN SPECIES	27	ST6GAL1 (ENSHGLG00000037893) #11	ENSHGLG00000036874	RTP1 (ENSHGLG00000013919) #12	MASP1 (ENSHGLG00000013470) #13	ENSHGLG00000048542	ENSHGLG00000046703 #15	ENSHGLG00000012948 #15	SST (ENSHGLG00000019161) #16	RTP2 (ENSHGLG00000016449) #17	BCL6 (ENSHGLG00000016440) #18	ENSHGLG00000021340 #19	LPP (ENSHGLG00000016385) #20	ENSHGLG00000036742	ENSHGLG00000042236	ENSHGLG00000039972 #21	TP63 (ENSHGLG00000016277) #22	P3H2 (ENSHGLG00000019175) #23	CLDN1 (ENSHGLG00000038289) #24	CLDN16 (ENSHGLG00000018130) #25	ENSHGLG00000035223	TMEM207 (ENSHGLG00000037564) #26	IL1RAP (ENSHGLG00000018108) #27	ENSHGLG00000036963 #27	ENSHGLG00000019218	GMNC (ENSHGLG00000017131) #28	ENSHGLG00000040250	ENSHGLG00000016933	ENSHGLG00000016923	OSTN (ENSHGLG00000039251) #29	ENSHGLG00000042558 #30	CCDC50 (ENSHGLG00000016906) #31
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Muroidea	ANCESTRAL SPECIES	11	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Northern American deer mouse	MODERN SPECIES	3	ENSPEMG00000021494	ENSPEMG00000009770	ENSPEMG00000021495 ##7	Rfc4 (ENSPEMG00000020418) #8	Adipoq (ENSPEMG00000031123) #9	St6gal1 (ENSPEMG00000016299) #11	Rtp1 (ENSPEMG00000014761) #12	Masp1 (ENSPEMG00000011384) #13	ENSPEMG00000025463	Sst (ENSPEMG00000017596) #16	Rtp2 (ENSPEMG00000020551) #17	Bcl6 (ENSPEMG00000020985) #18	Gm37419 (ENSPEMG00000002742) #19	Lpp (ENSPEMG00000011792) #20	Tprg (ENSPEMG00000020656) #21	Trp63 (ENSPEMG00000011679) #22	P3h2 (ENSPEMG00000016547) #23	Cldn1 (ENSPEMG00000025850) #24	Cldn16 (ENSPEMG00000013939) #25	Tmem207 (ENSPEMG00000030277) #26	Il1rap (ENSPEMG00000017318) #27	Gmnc (ENSPEMG00000023220) #28	Ostn (ENSPEMG00000020363) #29	Uts2b (ENSPEMG00000023514) #30	Ccdc50 (ENSPEMG00000020293) #31	ENSPEMG00000025234	Fgf12 (ENSPEMG00000012162) #33	Mb21d2 (ENSPEMG00000013470) #34	Plaat1 (ENSPEMG00000013741) #35	Atp13a5 (ENSPEMG00000015502) #36	Atp13a4 (ENSPEMG00000005881) #37
Prairie vole	MODERN SPECIES	7	ENSMOCG00000005648	Eif4a2 (ENSMOCG00000021828) ##7	ENSMOCG00000010433 #8	Adipoq (ENSMOCG00000012322) #9	ENSMOCG00000020013	St6gal1 (ENSMOCG00000006409) #11	Rtp1 (ENSMOCG00000015619) #12	Masp1 (ENSMOCG00000013690) #13	ENSMOCG00000014620 #15	Sst (ENSMOCG00000012687) #16	Rtp2 (ENSMOCG00000001704) #17	Bcl6 (ENSMOCG00000002694) #18	Gm37419 (ENSMOCG00000007874) #19	Lpp (ENSMOCG00000002241) #20	Tprg (ENSMOCG00000003239) #21	Trp63 (ENSMOCG00000015252) #22	P3h2 (ENSMOCG00000008061) #23	Cldn1 (ENSMOCG00000012023) #24	Cldn16 (ENSMOCG00000011704) #25	Tmem207 (ENSMOCG00000015831) #26	Il1rap (ENSMOCG00000005743) #27	Gmnc (ENSMOCG00000016556) #28	Ostn (ENSMOCG00000000665) #29	ENSMOCG00000012392 #30	Ccdc50 (ENSMOCG00000021446) #31	Fgf12 (ENSMOCG00000012507) #33	Mb21d2 (ENSMOCG00000010129) #34	Plaat1 (ENSMOCG00000002137) #35	Atp13a5 (ENSMOCG00000013629) #36	Atp13a4 (ENSMOCG00000021525) #37	Opa1 (ENSMOCG00000008528)
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00950000182930.A.b	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Chinese hamster chok1gshd	MODERN SPECIES	382	ENSCGRG00001018793	Eif4a2 (ENSCGRG00001022442) ##7	Rfc4 (ENSCGRG00001003704) #8	Adipoq (ENSCGRG00001004804) #9	St6gal1 (ENSCGRG00001012276) #11	ENSCGRG00001012307	Rtp1 (ENSCGRG00001015248) #12	Masp1 (ENSCGRG00001024632) #13	ENSCGRG00001013991 #15	Sst (ENSCGRG00001017689) #16	Rtp2 (ENSCGRG00001023610) #17	Bcl6 (ENSCGRG00001013589) #18	Gm37419 (ENSCGRG00001011798) #19	ENSCGRG00001019717	Tprg (ENSCGRG00001021582) #21	Trp63 (ENSCGRG00001009778) #22	P3h2 (ENSCGRG00001021764) #23	Cldn1 (ENSCGRG00001024994) #24	Cldn16 (ENSCGRG00001002709) #25	Tmem207 (ENSCGRG00001007696) #26	ENSCGRG00001009646	Il1rap (ENSCGRG00001017518) #27	Gmnc (ENSCGRG00001014744) #28	Ostn (ENSCGRG00001021571) #29	Uts2b (ENSCGRG00001017532) #30	Ccdc50 (ENSCGRG00001021357) #31	Fgf12 (ENSCGRG00001012908) #33	Mb21d2 (ENSCGRG00001021085) #34	Plaat1 (ENSCGRG00001000460) #35	Atp13a5 (ENSCGRG00001024264) #36	Atp13a4 (ENSCGRG00001024242) #37
Golden Hamster	MODERN SPECIES	645	Ahsg (ENSMAUG00000019960)	Fetub (ENSMAUG00000008221)	Hrg (ENSMAUG00000016556)	ENSMAUG00000003605	Rfc4 (ENSMAUG00000004500) #8	Adipoq (ENSMAUG00000020419) #9	St6gal1 (ENSMAUG00000015040) #11	Rtp1 (ENSMAUG00000021841) #12	Masp1 (ENSMAUG00000009980) #13	ENSMAUG00000008425 #15	Sst (ENSMAUG00000016983) #16	Gm37419 (ENSMAUG00000009832) #19	Bcl6 (ENSMAUG00000010580) #18	Lpp (ENSMAUG00000015219) #20	Tprg (ENSMAUG00000014159) #21	Trp63 (ENSMAUG00000008602) #22	P3h2 (ENSMAUG00000004803) #23	ENSMAUG00000005611	Cldn16 (ENSMAUG00000010011) #25	Tmem207 (ENSMAUG00000018884) #26	Il1rap (ENSMAUG00000021310) #27	Gmnc (ENSMAUG00000010906) #28	Ostn (ENSMAUG00000015065) #29	Uts2b (ENSMAUG00000014754) #30	Ccdc50 (ENSMAUG00000009454) #31	Fgf12 (ENSMAUG00000009873) #33	Mb21d2 (ENSMAUG00000015222) #34	Plaat1 (ENSMAUG00000009846) #35	Atp13a5 (ENSMAUG00000005310) #36	ENSMAUG00000014783 #37	ENSMAUG00000013061
Murinae	ANCESTRAL SPECIES	13	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Mus	ANCESTRAL SPECIES	13	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Mus_A	ANCESTRAL SPECIES	18	ENSGT00950000182930.B.l	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00900000143500	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Mus_B	ANCESTRAL SPECIES	18	ENSGT00950000182930.B.l	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00900000143500	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00900000143836 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Mus_C	ANCESTRAL SPECIES	12	ENSGT00950000182930.A.a	ENSGT00950000182930.B.l	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00900000143500	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
spretus	MODERN SPECIES	7	Hrg (MGP_SPRETEiJ_G0021506)	MGP_SPRETEiJ_G0021507	Eif4a2 (MGP_SPRETEiJ_G0021508) ##7	Rfc4 (MGP_SPRETEiJ_G0021509) #8	Adipoq (MGP_SPRETEiJ_G0021510) #9	MGP_SPRETEiJ_G0021511	St6gal1 (MGP_SPRETEiJ_G0021512) #11	Rtp1 (MGP_SPRETEiJ_G0021513) #12	MGP_SPRETEiJ_G0021514 #13	Rtp4 (MGP_SPRETEiJ_G0021515) #15	Sst (MGP_SPRETEiJ_G0021516) #16	Rtp2 (MGP_SPRETEiJ_G0021517) #17	Bcl6 (MGP_SPRETEiJ_G0021518) #18	Lpp (MGP_SPRETEiJ_G0021519) #20	Tprg (MGP_SPRETEiJ_G0021520) #21	Trp63 (MGP_SPRETEiJ_G0021521) #22	P3h2 (MGP_SPRETEiJ_G0021522) #23	Cldn1 (MGP_SPRETEiJ_G0021523) #24	Cldn16 (MGP_SPRETEiJ_G0021524) #25	Tmem207 (MGP_SPRETEiJ_G0021525) #26	Il1rap (MGP_SPRETEiJ_G0021526) #27	Gmnc (MGP_SPRETEiJ_G0021527) #28	Ostn (MGP_SPRETEiJ_G0021528) #29	Uts2b (MGP_SPRETEiJ_G0021529) #30	MGP_SPRETEiJ_G0021530 #31	Fgf12 (MGP_SPRETEiJ_G0021531) #33	Mb21d2 (MGP_SPRETEiJ_G0021532) #34	Plaat1 (MGP_SPRETEiJ_G0021533) #35	Atp13a5 (MGP_SPRETEiJ_G0021534) #36	Atp13a4 (MGP_SPRETEiJ_G0021535) #37	Opa1 (MGP_SPRETEiJ_G0021536)
Steppe mouse	MODERN SPECIES	75															Tprg (ENSMSIG00000008932) #21	Trp63 (ENSMSIG00000007986) #22	P3h2 (ENSMSIG00000007958) #23	Cldn1 (ENSMSIG00000007944) #24	Cldn16 (ENSMSIG00000007933) #25	Tmem207 (ENSMSIG00000007915) #26	Il1rap (ENSMSIG00000007880) #27	Gmnc (ENSMSIG00000007759) #28	Ostn (ENSMSIG00000007748) #29	Uts2b (ENSMSIG00000007715) #30	Ccdc50 (ENSMSIG00000007628) #31	ENSMSIG00000007596	Fgf12 (ENSMSIG00000007454) #33	Mb21d2 (ENSMSIG00000007424) #34	Plaat1 (ENSMSIG00000007402) #35	Atp13a5 (ENSMSIG00000007166) #36	Atp13a4 (ENSMSIG00000006926) #37
Mouse	MODERN SPECIES	7	Kng2 (ENSMUSG00000060459)	Kng1 (ENSMUSG00000022875)	Eif4a2 (ENSMUSG00000022884) ##7	Rfc4 (ENSMUSG00000022881) #8	Adipoq (ENSMUSG00000022878) #9	St6gal1 (ENSMUSG00000022885) #11	Rtp1 (ENSMUSG00000033383) #12	Masp1 (ENSMUSG00000022887) #13	Rtp4 (ENSMUSG00000033355) #15	Sst (ENSMUSG00000004366) #16	Rtp2 (ENSMUSG00000047531) #17	Bcl6 (ENSMUSG00000022508) #18	Gm37419 (ENSMUSG00000110291) #19	Lpp (ENSMUSG00000033306) #20	Tprg (ENSMUSG00000048399) #21	Trp63 (ENSMUSG00000022510) #22	P3h2 (ENSMUSG00000038168) #23	Cldn1 (ENSMUSG00000022512) #24	Cldn16 (ENSMUSG00000038148) #25	Tmem207 (ENSMUSG00000091972) #26	Il1rap (ENSMUSG00000022514) #27	Gmnc (ENSMUSG00000068428) #28	Ostn (ENSMUSG00000052276) #29	Uts2b (ENSMUSG00000056423) #30	Ccdc50 (ENSMUSG00000038127) #31	Fgf12 (ENSMUSG00000022523) #33	Mb21d2 (ENSMUSG00000051065) #34	Plaat1 (ENSMUSG00000022525) #35	Atp13a5 (ENSMUSG00000048939) #36	Atp13a4 (ENSMUSG00000038094) #37	Opa1 (ENSMUSG00000038084)
Ryukyu mouse	MODERN SPECIES	7	Hrg (MGP_CAROLIEiJ_G0020610)	MGP_CAROLIEiJ_G0020611	MGP_CAROLIEiJ_G0020612 ##7	Rfc4 (MGP_CAROLIEiJ_G0020613) #8	Adipoq (MGP_CAROLIEiJ_G0020614) #9	MGP_CAROLIEiJ_G0020615	St6gal1 (MGP_CAROLIEiJ_G0020616) #11	Rtp1 (MGP_CAROLIEiJ_G0020617) #12	MGP_CAROLIEiJ_G0020618 #13	MGP_CAROLIEiJ_G0020619 #15	Sst (MGP_CAROLIEiJ_G0020620) #16	Rtp2 (MGP_CAROLIEiJ_G0020621) #17	Bcl6 (MGP_CAROLIEiJ_G0020622) #18	Lpp (MGP_CAROLIEiJ_G0020623) #20	Tprg (MGP_CAROLIEiJ_G0020624) #21	Trp63 (MGP_CAROLIEiJ_G0020625) #22	P3h2 (MGP_CAROLIEiJ_G0020626) #23	Cldn1 (MGP_CAROLIEiJ_G0020627) #24	Cldn16 (MGP_CAROLIEiJ_G0020628) #25	Tmem207 (MGP_CAROLIEiJ_G0020629) #26	Il1rap (MGP_CAROLIEiJ_G0020630) #27	Gmnc (MGP_CAROLIEiJ_G0020631) #28	Ostn (MGP_CAROLIEiJ_G0020632) #29	MGP_CAROLIEiJ_G0020633 #30	MGP_CAROLIEiJ_G0020634 #31	Fgf12 (MGP_CAROLIEiJ_G0020635) #33	Mb21d2 (MGP_CAROLIEiJ_G0020636) #34	Plaat1 (MGP_CAROLIEiJ_G0020637) #35	Atp13a5 (MGP_CAROLIEiJ_G0020638) #36	Atp13a4 (MGP_CAROLIEiJ_G0020639) #37	Opa1 (MGP_CAROLIEiJ_G0020640)
Shrew mouse	MODERN SPECIES	3	Fetub (MGP_PahariEiJ_G0016313)	Hrg (MGP_PahariEiJ_G0016314)	Eif4a2 (MGP_PahariEiJ_G0016317) ##7	MGP_PahariEiJ_G0016318 #8	Adipoq (MGP_PahariEiJ_G0016319) #9	MGP_PahariEiJ_G0016320	St6gal1 (MGP_PahariEiJ_G0016321) #11	Rtp1 (MGP_PahariEiJ_G0016322) #12	MGP_PahariEiJ_G0016323 #13	MGP_PahariEiJ_G0016324 #15	Sst (MGP_PahariEiJ_G0016325) #16	Rtp2 (MGP_PahariEiJ_G0016326) #17	Bcl6 (MGP_PahariEiJ_G0016327) #18	Lpp (MGP_PahariEiJ_G0016328) #20	Tprg (MGP_PahariEiJ_G0016329) #21	Trp63 (MGP_PahariEiJ_G0016330) #22	P3h2 (MGP_PahariEiJ_G0016331) #23	Cldn1 (MGP_PahariEiJ_G0016332) #24	Cldn16 (MGP_PahariEiJ_G0016333) #25	Tmem207 (MGP_PahariEiJ_G0016334) #26	Il1rap (MGP_PahariEiJ_G0016335) #27	Gmnc (MGP_PahariEiJ_G0016336) #28	Ostn (MGP_PahariEiJ_G0016337) #29	Uts2b (MGP_PahariEiJ_G0016338) #30	MGP_PahariEiJ_G0016339 #31	Fgf12 (MGP_PahariEiJ_G0016340) #33	Mb21d2 (MGP_PahariEiJ_G0016341) #34	Plaat1 (MGP_PahariEiJ_G0016342) #35	Atp13a5 (MGP_PahariEiJ_G0016343) #36	Atp13a4 (MGP_PahariEiJ_G0016344) #37	Opa1 (MGP_PahariEiJ_G0016345)
Rat	MODERN SPECIES	2	Kng1 (ENSRNOG00000030387)	Eif4a2 (ENSRNOG00000001815) ##7	Rfc4 (ENSRNOG00000001816) #8	Adipoq (ENSRNOG00000001821) #9	St6gal1 (ENSRNOG00000001823) #11	Rtp1 (ENSRNOG00000021992) #12	Masp1 (ENSRNOG00000001827) #13	Rtp4 (ENSRNOG00000066242) #15	Sst (ENSRNOG00000001837) #16	Rtp2 (ENSRNOG00000022160) #17	Gm37419 (ENSRNOG00000069169) #19	Bcl6 (ENSRNOG00000001843) #18	LOC100365839 (ENSRNOG00000048109)	Lpp (ENSRNOG00000031669) #20	Tprg1 (ENSRNOG00000063970) #21	Tp63 (ENSRNOG00000001924) #22	P3h2 (ENSRNOG00000055751) #23	Cldn1 (ENSRNOG00000001926) #24	Cldn16 (ENSRNOG00000055138) #25	Tmem207 (ENSRNOG00000064931) #26	Il1rap (ENSRNOG00000001928) #27	Gmnc (ENSRNOG00000038505) #28	Ostn (ENSRNOG00000030462) #29	Uts2b (ENSRNOG00000038512) #30	Ccdc50 (ENSRNOG00000001930) #31	ENSRNOG00000067098	Fgf12 (ENSRNOG00000001931) #33	Mb21d2 (ENSRNOG00000024040) #34	Plaat1 (ENSRNOG00000001711) #35	Atp13a5 (ENSRNOG00000024127) #36	Il13ra1 (ENSRNOG00000001713)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1073													ENSNGAG00000010532 #18	Lpp (ENSNGAG00000020023) #20	Tprg (ENSNGAG00000018094) #21	Trp63 (ENSNGAG00000019130) #22	P3h2 (ENSNGAG00000000626) #23	Cldn1 (ENSNGAG00000011403) #24	Cldn16 (ENSNGAG00000022077) #25	Tmem207 (ENSNGAG00000024223) #26	Il1rap (ENSNGAG00000021840) #27	Gmnc (ENSNGAG00000019785) #28	Ostn (ENSNGAG00000013923) #29	Ccdc50 (ENSNGAG00000017549) #31
Lesser Egyptian jerboa	MODERN SPECIES	54	Fetub (ENSJJAG00000016431)	Hrg (ENSJJAG00000017501)	ENSJJAG00000013534	Eif4a2 (ENSJJAG00000021948) ##7	Rfc4 (ENSJJAG00000013310) #8	Adipoq (ENSJJAG00000012829) #9	St6gal1 (ENSJJAG00000011080) #11	Rtp1 (ENSJJAG00000006636) #12	Masp1 (ENSJJAG00000001597) #13	Sst (ENSJJAG00000011116) #16	ENSJJAG00000013069 #17	Bcl6 (ENSJJAG00000017558) #18	Lpp (ENSJJAG00000005575) #20	Tprg (ENSJJAG00000010735) #21	ENSJJAG00000008682	Trp63 (ENSJJAG00000024331) #22	P3h2 (ENSJJAG00000013941) #23	Cldn1 (ENSJJAG00000005290) #24	Cldn16 (ENSJJAG00000011916) #25	Tmem207 (ENSJJAG00000019213) #26	Il1rap (ENSJJAG00000023480) #27	Gmnc (ENSJJAG00000005924) #28	ENSJJAG00000014895	ENSJJAG00000016353	Ostn (ENSJJAG00000011935) #29	Uts2b (ENSJJAG00000009999) #30	Ccdc50 (ENSJJAG00000013724) #31	Fgf12 (ENSJJAG00000010829) #33	ENSJJAG00000022315 #34	Plaat1 (ENSJJAG00000020429) #35	Atp13a5 (ENSJJAG00000000516) #36
Kangaroo rat	MODERN SPECIES	364												Rtp2 (ENSDORG00000005606) #17	Bcl6 (ENSDORG00000005608) #18	Lpp (ENSDORG00000009250) #20	Tprg (ENSDORG00000007733) #21	Trp63 (ENSDORG00000002061) #22	P3h2 (ENSDORG00000001518) #23	Cldn1 (ENSDORG00000029833) #24	Cldn16 (ENSDORG00000008134) #25	Tmem207 (ENSDORG00000024124) #26	Il1rap (ENSDORG00000014736) #27	Gmnc (ENSDORG00000002326) #28	Ostn (ENSDORG00000008337) #29	ENSDORG00000006097 #30	ENSDORG00000029288 #31	Fgf12 (ENSDORG00000004553) #33	Mb21d2 (ENSDORG00000029028) #34	Plaat1 (ENSDORG00000009577) #35	Atp13a5 (ENSDORG00000009578) #36	Atp13a4 (ENSDORG00000005640) #37	Opa1 (ENSDORG00000014872)
Lagomorpha	ANCESTRAL SPECIES	9						ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Rabbit	MODERN SPECIES	5	MCF2L2 (ENSOCUG00000008674)	B3GNT5 (ENSOCUG00000008691)	ADIPOQ (ENSOCUG00000026268) #9	ENSOCUG00000032488	ST6GAL1 (ENSOCUG00000027209) #11	RTP1 (ENSOCUG00000000046) #12	MASP1 (ENSOCUG00000000049) #13	ENSOCUG00000007680 #15	SST (ENSOCUG00000007564) #16	RTP2 (ENSOCUG00000005426) #17	BCL6 (ENSOCUG00000005429) #18	ENSOCUG00000030680	LPP (ENSOCUG00000011764) #20	TPRG1 (ENSOCUG00000015959) #21	ENSOCUG00000038822	TP63 (ENSOCUG00000016465) #22	P3H2 (ENSOCUG00000011014) #23	CLDN1 (ENSOCUG00000011464) #24	CLDN16 (ENSOCUG00000011471) #25	TMEM207 (ENSOCUG00000029314) #26	IL1RAP (ENSOCUG00000004870) #27	GMNC (ENSOCUG00000009539) #28	OSTN (ENSOCUG00000007035) #29	UTS2B (ENSOCUG00000007038) #30	ENSOCUG00000013247	ENSOCUG00000035755	CCDC50 (ENSOCUG00000012695) #31	ENSOCUG00000026253	FGF12 (ENSOCUG00000007581) #33	MB21D2 (ENSOCUG00000015208) #34	ENSOCUG00000039155
Pika	MODERN SPECIES	3378																TP63 (ENSOPRG00000002855) #22
Tree shrew	MODERN SPECIES	3956																TP63 (ENSTBEG00000004215) #22	P3H2 (ENSTBEG00000004997) #23
Primates	ANCESTRAL SPECIES	1	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Greater bamboo lemur	MODERN SPECIES	204	HRG (ENSPSMG00000017929)	KNG1 (ENSPSMG00000017958)	ENSPSMG00000017969	EIF4A2 (ENSPSMG00000018170) ##7	RFC4 (ENSPSMG00000018424) #8	ADIPOQ (ENSPSMG00000018436) #9	ST6GAL1 (ENSPSMG00000018449) #11	RTP1 (ENSPSMG00000018457) #12	MASP1 (ENSPSMG00000018502) #13	RTP4 (ENSPSMG00000018513) #15	SST (ENSPSMG00000018528) #16	RTP2 (ENSPSMG00000018537) #17	BCL6 (ENSPSMG00000018578) #18	LPP (ENSPSMG00000018606) #20	TPRG1 (ENSPSMG00000018617) #21	TP63 (ENSPSMG00000018878) #22	P3H2 (ENSPSMG00000019303) #23	CLDN1 (ENSPSMG00000019325) #24	CLDN16 (ENSPSMG00000019333) #25	TMEM207 (ENSPSMG00000019337) #26	IL1RAP (ENSPSMG00000019383) #27	GMNC (ENSPSMG00000019439) #28	OSTN (ENSPSMG00000019456) #29	UTS2B (ENSPSMG00000019467) #30	CCDC50 (ENSPSMG00000019516) #31	FGF12 (ENSPSMG00000019586) #33	MB21D2 (ENSPSMG00000019610) #34
Coquerels sifaka	MODERN SPECIES	51	ENSPCOG00000011937	ENSPCOG00000023128 ##7	ENSPCOG00000022478 ##7	RFC4 (ENSPCOG00000020416) #8	ADIPOQ (ENSPCOG00000018188) #9	ST6GAL1 (ENSPCOG00000027428) #11	RTP1 (ENSPCOG00000013656) #12	MASP1 (ENSPCOG00000021789) #13	RTP4 (ENSPCOG00000017208) #15	SST (ENSPCOG00000015750) #16	RTP2 (ENSPCOG00000006581) #17	BCL6 (ENSPCOG00000016145) #18	ENSPCOG00000003076	LPP (ENSPCOG00000026763) #20	TPRG1 (ENSPCOG00000023780) #21	TP63 (ENSPCOG00000028226) #22	P3H2 (ENSPCOG00000003301) #23	CLDN1 (ENSPCOG00000028280) #24	ENSPCOG00000019841 #25	TMEM207 (ENSPCOG00000014987) #26	IL1RAP (ENSPCOG00000018786) #27	GMNC (ENSPCOG00000018260) #28	OSTN (ENSPCOG00000011464) #29	UTS2B (ENSPCOG00000015337) #30	CCDC50 (ENSPCOG00000024703) #31	FGF12 (ENSPCOG00000019039) #33	MB21D2 (ENSPCOG00000015745) #34	ENSPCOG00000010813	PLAAT1 (ENSPCOG00000026033) #35	ATP13A5 (ENSPCOG00000019802) #36	ATP13A4 (ENSPCOG00000026873) #37
Mouse lemur	MODERN SPECIES		FETUB (ENSMICG00000049077)	HRG (ENSMICG00000049137)	ENSMICG00000049111	ENSMICG00000049007 ##7	RFC4 (ENSMICG00000049348) #8	ADIPOQ (ENSMICG00000049529) #9	ST6GAL1 (ENSMICG00000049172) #11	RTP1 (ENSMICG00000049280) #12	MASP1 (ENSMICG00000049333) #13	RTP4 (ENSMICG00000048967) #15	SST (ENSMICG00000049023) #16	RTP2 (ENSMICG00000049274) #17	BCL6 (ENSMICG00000049071) #18	LPP (ENSMICG00000049379) #20	TPRG1 (ENSMICG00000048908) #21	TP63 (ENSMICG00000049134) #22	P3H2 (ENSMICG00000049208) #23	CLDN1 (ENSMICG00000049297) #24	CLDN16 (ENSMICG00000049404) #25	TMEM207 (ENSMICG00000049457) #26	IL1RAP (ENSMICG00000049250) #27	GMNC (ENSMICG00000048624) #28	OSTN (ENSMICG00000049275) #29	UTS2B (ENSMICG00000049145) #30	CCDC50 (ENSMICG00000048952) #31	FGF12 (ENSMICG00000049216) #33	MB21D2 (ENSMICG00000048922) #34	PLAAT1 (ENSMICG00000049538) #35	ATP13A5 (ENSMICG00000049567) #36	ATP13A4 (ENSMICG00000049368) #37	OPA1 (ENSMICG00000049289)
Bushbaby	MODERN SPECIES	175	KNG1 (ENSOGAG00000010727)	EIF4A2 (ENSOGAG00000010729) ##7	RFC4 (ENSOGAG00000010731) #8	ADIPOQ (ENSOGAG00000001420) #9	ENSOGAG00000006318 #11	RTP1 (ENSOGAG00000016037) #12	MASP1 (ENSOGAG00000016044) #13	RTP4 (ENSOGAG00000001301) #15	SST (ENSOGAG00000025929) #16	RTP2 (ENSOGAG00000029969) #17	BCL6 (ENSOGAG00000007638) #18	ENSOGAG00000031870	LPP (ENSOGAG00000004548) #20	TPRG1 (ENSOGAG00000003837) #21	ENSOGAG00000026020	TP63 (ENSOGAG00000003838) #22	P3H2 (ENSOGAG00000003842) #23	CLDN1 (ENSOGAG00000008451) #24	CLDN16 (ENSOGAG00000002915) #25	IL1RAP (ENSOGAG00000009256) #27	GMNC (ENSOGAG00000000798) #28	OSTN (ENSOGAG00000007086) #29	CCDC50 (ENSOGAG00000007089) #31	ENSOGAG00000032804	ENSOGAG00000033253	FGF12 (ENSOGAG00000010039) #33	MB21D2 (ENSOGAG00000007155) #34	PLAAT1 (ENSOGAG00000004769) #35	ENSOGAG00000029500	ATP13A5 (ENSOGAG00000006643) #36	ATP13A4 (ENSOGAG00000006651) #37
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00860000135739	ENSGT00940000153404.a.m.a.b	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00910000146829	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000182991.B.yb.b	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000155932.d	ENSGT00940000156634 #35
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00910000146829	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000182991.B.yb.b	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000155932.d	ENSGT00940000156634 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055.a	ENSGT00910000146829	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000182991.B.yb.b	ENSGT00910000148791	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000155932.d
Gorilla	MODERN SPECIES	16	ST6GAL1 (ENSGGOG00000006615) #11	RPL39L (ENSGGOG00000039881)	ENSGGOG00000016803	RTP1 (ENSGGOG00000001218) #12	MASP1 (ENSGGOG00000001219) #13	RTP4 (ENSGGOG00000001227) #15	SST (ENSGGOG00000022732) #16	RTP2 (ENSGGOG00000003127) #17	BCL6 (ENSGGOG00000026549) #18	ENSGGOG00000041129	ENSGGOG00000042377	ENSGGOG00000041374	LPP (ENSGGOG00000016679) #20	ENSGGOG00000040908	TPRG1 (ENSGGOG00000044070) #21	TP63 (ENSGGOG00000005113) #22	P3H2 (ENSGGOG00000009749) #23	ENSGGOG00000039775	ENSGGOG00000037128	CLDN1 (ENSGGOG00000013999) #24	ENSGGOG00000025366 #25	TMEM207 (ENSGGOG00000015572) #26	ENSGGOG00000012048 #27	GMNC (ENSGGOG00000038407) #28	OSTN (ENSGGOG00000039295) #29	UTS2B (ENSGGOG00000034872) #30	CCDC50 (ENSGGOG00000011521) #31	PYDC2 (ENSGGOG00000043904)	ENSGGOG00000036293 #33	MB21D2 (ENSGGOG00000038723) #34	ENSGGOG00000025693
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055.a	ENSGT00910000146829	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000182991.B.yb.b	ENSGT00910000148791	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000155932.d
Pan	ANCESTRAL SPECIES	2	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055.a	ENSGT00910000146829	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000182991.B.yb.b	ENSGT00910000148791	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000155932.d
Chimpanzee	MODERN SPECIES	16	ENSPTRG00000051976	ST6GAL1 (ENSPTRG00000015722) #11	RPL39L (ENSPTRG00000052452)	ENSPTRG00000015723	RTP1 (ENSPTRG00000015724) #12	MASP1 (ENSPTRG00000015725) #13	RTP4 (ENSPTRG00000051696) #15	SST (ENSPTRG00000044002) #16	RTP2 (ENSPTRG00000023089) #17	BCL6 (ENSPTRG00000015728) #18	ENSPTRG00000051294	ENSPTRG00000047202	LPP (ENSPTRG00000015730) #20	ENSPTRG00000051134	TPRG1 (ENSPTRG00000015732) #21	TP63 (ENSPTRG00000015733) #22	P3H2 (ENSPTRG00000015736) #23	ENSPTRG00000050590	ENSPTRG00000048994	CLDN1 (ENSPTRG00000015738) #24	CLDN16 (ENSPTRG00000015739) #25	TMEM207 (ENSPTRG00000022961) #26	IL1RAP (ENSPTRG00000015740) #27	GMNC (ENSPTRG00000030020) #28	OSTN (ENSPTRG00000046164) #29	UTS2B (ENSPTRG00000015744) #30	CCDC50 (ENSPTRG00000015745) #31	PYDC2 (ENSPTRG00000040350)	FGF12 (ENSPTRG00000046123) #33	MB21D2 (ENSPTRG00000043316) #34	ENSPTRG00000051704
Bonobo	MODERN SPECIES	16	ENSPPAG00000029770	ST6GAL1 (ENSPPAG00000032791) #11	RPL39L (ENSPPAG00000001747)	ENSPPAG00000027789	RTP1 (ENSPPAG00000031151) #12	MASP1 (ENSPPAG00000036653) #13	RTP4 (ENSPPAG00000031599) #15	SST (ENSPPAG00000028286) #16	RTP2 (ENSPPAG00000043898) #17	BCL6 (ENSPPAG00000028978) #18	ENSPPAG00000008282	ENSPPAG00000015792	LPP (ENSPPAG00000030332) #20	ENSPPAG00000032220	TPRG1 (ENSPPAG00000040147) #21	TP63 (ENSPPAG00000037443) #22	P3H2 (ENSPPAG00000040013) #23	ENSPPAG00000012623	ENSPPAG00000043962	CLDN1 (ENSPPAG00000034892) #24	ENSPPAG00000031653 #25	TMEM207 (ENSPPAG00000002222) #26	ENSPPAG00000008766 #27	GMNC (ENSPPAG00000017215) #28	OSTN (ENSPPAG00000031371) #29	ENSPPAG00000005215 #30	CCDC50 (ENSPPAG00000029089) #31	PYDC2 (ENSPPAG00000003263)	TPT1 (ENSPPAG00000041854)	GTF2F2 (ENSPPAG00000035711)	KCTD4 (ENSPPAG00000012273)
Human	MODERN SPECIES	15	KNG1 (ENSG00000113889)	EIF4A2 (ENSG00000156976) #7	RFC4 (ENSG00000163918) #8	ADIPOQ (ENSG00000181092) #9	ST6GAL1 (ENSG00000073849) #11	RPL39L (ENSG00000163923)	RTP1 (ENSG00000175077) #12	MASP1 (ENSG00000127241) #13	RTP4 (ENSG00000136514) #15	SST (ENSG00000157005) #16	RTP2 (ENSG00000198471) #17	BCL6 (ENSG00000113916) #18	ENSG00000285938	LPP (ENSG00000145012) #20	TPRG1 (ENSG00000188001) #21	TP63 (ENSG00000073282) #22	P3H2 (ENSG00000090530) #23	CLDN1 (ENSG00000163347) #24	CLDN16 (ENSG00000113946) #25	TMEM207 (ENSG00000198398) #26	IL1RAP (ENSG00000196083) #27	GMNC (ENSG00000205835) #28	OSTN (ENSG00000188729) #29	UTS2B (ENSG00000188958) #30	CCDC50 (ENSG00000152492) #31	PYDC2 (ENSG00000253548)	FGF12 (ENSG00000114279) #33	MB21D2 (ENSG00000180611) #34	PLAAT1 (ENSG00000127252) #35	ATP13A5 (ENSG00000187527) #36	ATP13A4 (ENSG00000127249) #37
Orangutan	MODERN SPECIES	16	HRG (ENSPPYG00000014382)	KNG1 (ENSPPYG00000014383)	ENSPPYG00000030139	EIF4A2 (ENSPPYG00000014384) #7	RFC4 (ENSPPYG00000014385) #8	ADIPOQ (ENSPPYG00000014386) #9	ST6GAL1 (ENSPPYG00000014388) #11	RTP1 (ENSPPYG00000041265) #12	MASP1 (ENSPPYG00000014391) #13	RTP4 (ENSPPYG00000014392) #15	SST (ENSPPYG00000014393) #16	RTP2 (ENSPPYG00000014394) #17	BCL6 (ENSPPYG00000014395) #18	LPP (ENSPPYG00000014398) #20	TPRG1 (ENSPPYG00000014400) #21	TP63 (ENSPPYG00000014401) #22	P3H2 (ENSPPYG00000040690) #23	CLDN1 (ENSPPYG00000014402) #24	ENSPPYG00000014403 #25	TMEM207 (ENSPPYG00000038274) #26	IL1RAP (ENSPPYG00000014405) #27	GMNC (ENSPPYG00000014407) #28	OSTN (ENSPPYG00000014408) #29	ENSPPYG00000014409 #30	ENSPPYG00000039495	CCDC50 (ENSPPYG00000014410) #31	PYDC2 (ENSPPYG00000014482)	FGF12 (ENSPPYG00000014412) #33	MB21D2 (ENSPPYG00000014413) #34	ENSPPYG00000030366	ENSPPYG00000014414 #35
Gibbon	MODERN SPECIES	1	RFC4 (ENSNLEG00000006660) #8	ADIPOQ (ENSNLEG00000006671) #9	ST6GAL1 (ENSNLEG00000006676) #11	RPL39L (ENSNLEG00000032768)	ENSNLEG00000006682	RTP1 (ENSNLEG00000006684) #12	MASP1 (ENSNLEG00000006685) #13	RTP4 (ENSNLEG00000006699) #15	SST (ENSNLEG00000006701) #16	RTP2 (ENSNLEG00000006702) #17	BCL6 (ENSNLEG00000006705) #18	ENSNLEG00000032641	LPP (ENSNLEG00000006716) #20	ENSNLEG00000036105	TPRG1 (ENSNLEG00000034710) #21	TP63 (ENSNLEG00000006723) #22	ENSNLEG00000006734 #23	ENSNLEG00000031270	CLDN1 (ENSNLEG00000006737) #24	ENSNLEG00000006741 #25	TMEM207 (ENSNLEG00000006744) #26	ENSNLEG00000006747 #27	ENSNLEG00000030845	GMNC (ENSNLEG00000006755) #28	OSTN (ENSNLEG00000006760) #29	UTS2B (ENSNLEG00000006764) #30	CCDC50 (ENSNLEG00000006769) #31	ENSNLEG00000006781 #33	MB21D2 (ENSNLEG00000032215) #34	ENSNLEG00000032196	ENSNLEG00000006785 #35
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Vervet Monkey	MODERN SPECIES	6	ENSCSAG00000009249	EIF4A2 (ENSCSAG00000009233) #7	RFC4 (ENSCSAG00000009218) #8	ADIPOQ (ENSCSAG00000009208) #9	ST6GAL1 (ENSCSAG00000009201) #11	RPL39L (ENSCSAG00000018929)	RTP1 (ENSCSAG00000009199) #12	MASP1 (ENSCSAG00000009191) #13	RTP4 (ENSCSAG00000009173) #15	SST (ENSCSAG00000009164) #16	RTP2 (ENSCSAG00000009160) #17	ENSCSAG00000009153	BCL6 (ENSCSAG00000009138) #18	LPP (ENSCSAG00000009098) #20	TPRG1 (ENSCSAG00000009086) #21	TP63 (ENSCSAG00000009062) #22	P3H2 (ENSCSAG00000009034) #23	CLDN1 (ENSCSAG00000009021) #24	CLDN16 (ENSCSAG00000009010) #25	TMEM207 (ENSCSAG00000008995) #26	IL1RAP (ENSCSAG00000008986) #27	GMNC (ENSCSAG00000008977) #28	OSTN (ENSCSAG00000008968) #29	CCDC50 (ENSCSAG00000008960) #31	PYDC2 (ENSCSAG00000018930)	ENSCSAG00000008940 #33	ENSCSAG00000018932	MB21D2 (ENSCSAG00000008934) #34	PLAAT1 (ENSCSAG00000008930) #35	ATP13A5 (ENSCSAG00000008918) #36	ATP13A4 (ENSCSAG00000008891) #37
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Macaca	ANCESTRAL SPECIES	5	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Pig-tailed macaque	MODERN SPECIES	467	ENSMNEG00000037200	ENSMNEG00000037282 #7	RFC4 (ENSMNEG00000039111) #8	ADIPOQ (ENSMNEG00000043042) #9	ST6GAL1 (ENSMNEG00000019258) #11	RPL39L (ENSMNEG00000002491)	RTP1 (ENSMNEG00000043982) #12	MASP1 (ENSMNEG00000031506) #13	RTP4 (ENSMNEG00000037616) #15	SST (ENSMNEG00000045012) #16	RTP2 (ENSMNEG00000035103) #17	BCL6 (ENSMNEG00000034068) #18	ENSMNEG00000026531	LPP (ENSMNEG00000044410) #20	TPRG1 (ENSMNEG00000031001) #21	TP63 (ENSMNEG00000031212) #22	ENSMNEG00000034052	P3H2 (ENSMNEG00000027261) #23	CLDN1 (ENSMNEG00000035518) #24	CLDN16 (ENSMNEG00000030636) #25	TMEM207 (ENSMNEG00000036710) #26	IL1RAP (ENSMNEG00000036837) #27	GMNC (ENSMNEG00000004508) #28	OSTN (ENSMNEG00000030520) #29	UTS2B (ENSMNEG00000043623) #30	CCDC50 (ENSMNEG00000040554) #31	PYDC2 (ENSMNEG00000024221)	FGF12 (ENSMNEG00000035711) #33	ENSMNEG00000027205	MB21D2 (ENSMNEG00000000014) #34	PLAAT1 (ENSMNEG00000030309) #35
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00950000183092.b.b	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT01100000263765.a.b	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000002146	EIF4A2 (ENSMFAG00000044567) #7	RFC4 (ENSMFAG00000030286) #8	ADIPOQ (ENSMFAG00000000511) #9	ENSMFAG00000055097	ST6GAL1 (ENSMFAG00000062040) #11	RTP1 (ENSMFAG00000056809) #12	MASP1 (ENSMFAG00000040221) #13	RTP4 (ENSMFAG00000037745) #15	ENSMFAG00000063127	SST (ENSMFAG00000043924) #16	RTP2 (ENSMFAG00000043246) #17	BCL6 (ENSMFAG00000001360) #18	LPP (ENSMFAG00000041519) #20	TPRG1 (ENSMFAG00000056922) #21	TP63 (ENSMFAG00000035702) #22	P3H2 (ENSMFAG00000036104) #23	ENSMFAG00000060414	CLDN1 (ENSMFAG00000062691) #24	CLDN16 (ENSMFAG00000043262) #25	TMEM207 (ENSMFAG00000001349) #26	IL1RAP (ENSMFAG00000039646) #27	GMNC (ENSMFAG00000031832) #28	OSTN (ENSMFAG00000054957) #29	ENSMFAG00000048722	UTS2B (ENSMFAG00000037124) #30	CCDC50 (ENSMFAG00000034097) #31	FGF12 (ENSMFAG00000036517) #33	MB21D2 (ENSMFAG00000032253) #34	PLAAT1 (ENSMFAG00000039474) #35	ENSMFAG00000055991
Rhesus	MODERN SPECIES	11	ENSMMUG00000057833	EIF4A2 (ENSMMUG00000003702) #7	RFC4 (ENSMMUG00000003704) #8	ADIPOQ (ENSMMUG00000002684) #9	ST6GAL1 (ENSMMUG00000014905) #11	RTP1 (ENSMMUG00000052643) #12	RTP4 (ENSMMUG00000013007) #15	MASP1 (ENSMMUG00000013004) #13	ENSMMUG00000057489	SST (ENSMMUG00000000850) #16	RTP2 (ENSMMUG00000050972) #17	BCL6 (ENSMMUG00000009198) #18	ENSMMUG00000049390	LPP (ENSMMUG00000016823) #20	ENSMMUG00000061703	TP63 (ENSMMUG00000016466) #22	P3H2 (ENSMMUG00000000623) #23	ENSMMUG00000055459	CLDN1 (ENSMMUG00000001915) #24	CLDN16 (ENSMMUG00000018671) #25	TMEM207 (ENSMMUG00000052741) #26	IL1RAP (ENSMMUG00000022562) #27	GMNC (ENSMMUG00000065165) #28	OSTN (ENSMMUG00000020068) #29	UTS2B (ENSMMUG00000046004) #30	CCDC50 (ENSMMUG00000015330) #31	PYDC2 (ENSMMUG00000014141)	FGF12 (ENSMMUG00000000949) #33	MB21D2 (ENSMMUG00000042245) #34	ENSMMUG00000023553	PLAAT1 (ENSMMUG00000008865) #35
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00950000183014.f.b.a.a.t.h.b	ENSGT00940000156634 #35
Olive baboon	MODERN SPECIES	11	ENSPANG00000049097	ST6GAL1 (ENSPANG00000024521) #11	RPL39L (ENSPANG00000040014)	RTP1 (ENSPANG00000024993) #12	MASP1 (ENSPANG00000014789) #13	RTP4 (ENSPANG00000018683) #15	ENSPANG00000040166	SST (ENSPANG00000015209) #16	RTP2 (ENSPANG00000024520) #17	BCL6 (ENSPANG00000017677) #18	ENSPANG00000029638	ENSPANG00000051339	LPP (ENSPANG00000006486) #20	ENSPANG00000037115	TPRG1 (ENSPANG00000004350) #21	TP63 (ENSPANG00000006656) #22	P3H2 (ENSPANG00000005379) #23	ENSPANG00000051089	CLDN1 (ENSPANG00000012594) #24	CLDN16 (ENSPANG00000013683) #25	TMEM207 (ENSPANG00000005049) #26	IL1RAP (ENSPANG00000002308) #27	GMNC (ENSPANG00000048845) #28	OSTN (ENSPANG00000011077) #29	UTS2B (ENSPANG00000029460) #30	CCDC50 (ENSPANG00000014020) #31	PYDC2 (ENSPANG00000007087)	FGF12 (ENSPANG00000004654) #33	ENSPANG00000038631	ENSPANG00000040009	MB21D2 (ENSPANG00000008890) #34
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00950000182991.B.xb	ENSGT00940000159593 #23	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000161714.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00950000183014.f.b.a.a.t.h.b
Drill	MODERN SPECIES	1320									SST (ENSMLEG00000033788) #16	RTP2 (ENSMLEG00000032353) #17	ENSMLEG00000016809	BCL6 (ENSMLEG00000036711) #18	ENSMLEG00000033291	LPP (ENSMLEG00000041784) #20	TPRG1 (ENSMLEG00000032395) #21	TP63 (ENSMLEG00000000341) #22
Sooty mangabey	MODERN SPECIES	458	ENSCATG00000041517	ENSCATG00000039271 #7	RFC4 (ENSCATG00000030055) #8	ADIPOQ (ENSCATG00000042041) #9	ST6GAL1 (ENSCATG00000045114) #11	RTP1 (ENSCATG00000044988) #12	MASP1 (ENSCATG00000018550) #13	RTP4 (ENSCATG00000040867) #15	SST (ENSCATG00000043311) #16	RTP2 (ENSCATG00000043231) #17	BCL6 (ENSCATG00000037799) #18	ENSCATG00000000908	ENSCATG00000031819	LPP (ENSCATG00000039755) #20	TPRG1 (ENSCATG00000034206) #21	TP63 (ENSCATG00000035905) #22	ENSCATG00000035983	ENSCATG00000035534	P3H2 (ENSCATG00000004107) #23	ENSCATG00000043737	CLDN1 (ENSCATG00000036292) #24	CLDN16 (ENSCATG00000032777) #25	TMEM207 (ENSCATG00000030596) #26	IL1RAP (ENSCATG00000039782) #27	GMNC (ENSCATG00000036034) #28	OSTN (ENSCATG00000037128) #29	UTS2B (ENSCATG00000039473) #30	CCDC50 (ENSCATG00000045300) #31	PYDC2 (ENSCATG00000009968)	FGF12 (ENSCATG00000014779) #33	MB21D2 (ENSCATG00000038408) #34
Rhinopithecus	ANCESTRAL SPECIES	40	ENSGT00940000153404.a.m.a.b	ENSGT00940000153783.b.b.c.a.a.a.e.a #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000165055	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b.a #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Black snub-nosed monkey	MODERN SPECIES	445	ENSRBIG00000033648 #7	RFC4 (ENSRBIG00000037549) #8	ADIPOQ (ENSRBIG00000029712) #9	ST6GAL1 (ENSRBIG00000034689) #11	RPL39L (ENSRBIG00000029733)	RTP1 (ENSRBIG00000033795) #12	MASP1 (ENSRBIG00000031439) #13	RTP4 (ENSRBIG00000037859) #15	ENSRBIG00000025508	SST (ENSRBIG00000034961) #16	RTP2 (ENSRBIG00000041980) #17	BCL6 (ENSRBIG00000042034) #18	ENSRBIG00000016306	LPP (ENSRBIG00000028952) #20	TPRG1 (ENSRBIG00000030698) #21	TP63 (ENSRBIG00000028344) #22	P3H2 (ENSRBIG00000018185) #23	ENSRBIG00000040888	CLDN1 (ENSRBIG00000041199) #24	CLDN16 (ENSRBIG00000001398) #25	TMEM207 (ENSRBIG00000013157) #26	IL1RAP (ENSRBIG00000041877) #27	GMNC (ENSRBIG00000034785) #28	OSTN (ENSRBIG00000029991) #29	UTS2B (ENSRBIG00000038653) #30	CCDC50 (ENSRBIG00000040213) #31	FGF12 (ENSRBIG00000042333) #33	MB21D2 (ENSRBIG00000031675) #34	PLAAT1 (ENSRBIG00000044405) #35	ATP13A5 (ENSRBIG00000034176) #36	ATP13A4 (ENSRBIG00000034199) #37
Golden snub-nosed monkey	MODERN SPECIES	2540																TP63 (ENSRROG00000014405) #22	P3H2 (ENSRROG00000031164) #23	ENSRROG00000036087	CLDN1 (ENSRROG00000041334) #24	CLDN16 (ENSRROG00000038871) #25	TMEM207 (ENSRROG00000028907) #26	IL1RAP (ENSRROG00000028179) #27	ENSRROG00000033558	GMNC (ENSRROG00000016456) #28	OSTN (ENSRROG00000029029) #29	UTS2B (ENSRROG00000015194) #30	ENSRROG00000034692 #31	ENSRROG00000042407
Platyrrhini	ANCESTRAL SPECIES	43	ENSGT00860000135739	ENSGT00940000153404.a.m.a.b	ENSGT00940000153783.b.b.c.a.a.a.l #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Cebidae	ANCESTRAL SPECIES	14	ENSGT00860000135739	ENSGT00940000153404.a.m.a.b	ENSGT00940000153783.b.b.c.a.a.a.l #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00860000135739	ENSGT00940000153404.a.m.a.b	ENSGT00940000153783.b.b.c.a.a.a.l #7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Capuchin	MODERN SPECIES	220					ST6GAL1 (ENSCCAG00000022394) #11	RTP1 (ENSCCAG00000038054) #12	MASP1 (ENSCCAG00000032872) #13	RTP4 (ENSCCAG00000034075) #15	SST (ENSCCAG00000024768) #16	RTP2 (ENSCCAG00000026363) #17	BCL6 (ENSCCAG00000026327) #18	ENSCCAG00000019603	LPP (ENSCCAG00000036302) #20	ENSCCAG00000032621	TPRG1 (ENSCCAG00000024855) #21	TP63 (ENSCCAG00000026834) #22	ENSCCAG00000035160	P3H2 (ENSCCAG00000034046) #23	ENSCCAG00000035543	CLDN1 (ENSCCAG00000022266) #24	CLDN16 (ENSCCAG00000022441) #25	TMEM207 (ENSCCAG00000035837) #26	ENSCCAG00000018524 #27
Bolivian squirrel monkey	MODERN SPECIES	62	HRG (ENSSBOG00000032222)	KNG1 (ENSSBOG00000026668)	ENSSBOG00000027939	ENSSBOG00000020018 #7	RFC4 (ENSSBOG00000034603) #8	ADIPOQ (ENSSBOG00000010912) #9	ST6GAL1 (ENSSBOG00000024848) #11	RTP1 (ENSSBOG00000029722) #12	MASP1 (ENSSBOG00000035059) #13	RTP4 (ENSSBOG00000036013) #15	SST (ENSSBOG00000023193) #16	RTP2 (ENSSBOG00000032336) #17	BCL6 (ENSSBOG00000026320) #18	LPP (ENSSBOG00000028068) #20	TPRG1 (ENSSBOG00000036102) #21	TP63 (ENSSBOG00000033306) #22	P3H2 (ENSSBOG00000035056) #23	CLDN1 (ENSSBOG00000020833) #24	CLDN16 (ENSSBOG00000029384) #25	TMEM207 (ENSSBOG00000036118) #26	IL1RAP (ENSSBOG00000032825) #27	GMNC (ENSSBOG00000035297) #28	ENSSBOG00000035925	OSTN (ENSSBOG00000032414) #29	ENSSBOG00000032518	CCDC50 (ENSSBOG00000033037) #31	ENSSBOG00000035617	ENSSBOG00000033371	FGF12 (ENSSBOG00000033018) #33	ENSSBOG00000022053	MB21D2 (ENSSBOG00000021427) #34
Marmoset	MODERN SPECIES	6	ST6GAL1 (ENSCJAG00000044937) #11	ENSCJAG00000086734	ENSCJAG00000061618	ENSCJAG00000077846	RTP1 (ENSCJAG00000082912) #12	MASP1 (ENSCJAG00000014429) #13	RTP4 (ENSCJAG00000014427) #15	SST (ENSCJAG00000014415) #16	RTP2 (ENSCJAG00000014409) #17	BCL6 (ENSCJAG00000014375) #18	ENSCJAG00000041964	ENSCJAG00000077902	ENSCJAG00000071140	LPP (ENSCJAG00000014354) #20	TPRG1 (ENSCJAG00000014348) #21	TP63 (ENSCJAG00000014256) #22	P3H2 (ENSCJAG00000014239) #23	ENSCJAG00000059304	CLDN1 (ENSCJAG00000046185) #24	CLDN16 (ENSCJAG00000014218) #25	TMEM207 (ENSCJAG00000046748) #26	IL1RAP (ENSCJAG00000014191) #27	GMNC (ENSCJAG00000074485) #28	OSTN (ENSCJAG00000064215) #29	CCDC50 (ENSCJAG00000014177) #31	ENSCJAG00000072839	FGF12 (ENSCJAG00000040892) #33	MB21D2 (ENSCJAG00000057912) #34	PLAAT1 (ENSCJAG00000014159) #35	ATP13A5 (ENSCJAG00000014131) #36	ATP13A4 (ENSCJAG00000014072) #37
Mas night monkey	MODERN SPECIES	536															TPRG1 (ENSANAG00000035411) #21	TP63 (ENSANAG00000035266) #22	P3H2 (ENSANAG00000021430) #23	CLDN1 (ENSANAG00000030212) #24	CLDN16 (ENSANAG00000026689) #25	TMEM207 (ENSANAG00000000019) #26	IL1RAP (ENSANAG00000035717) #27	GMNC (ENSANAG00000023406) #28	OSTN (ENSANAG00000029559) #29	UTS2B (ENSANAG00000034010) #30	CCDC50 (ENSANAG00000037574) #31	ENSANAG00000032688	FGF12 (ENSANAG00000019853) #33	MB21D2 (ENSANAG00000037636) #34	PLAAT1 (ENSANAG00000031574) #35	ATP13A5 (ENSANAG00000026333) #36	ATP13A4 (ENSANAG00000023937) #37
Tarsier	MODERN SPECIES	6820																TP63 (ENSTSYG00000003709) #22	ENSTSYG00000036992	P3H2 (ENSTSYG00000008652) #23	ENSTSYG00000033595	CLDN1 (ENSTSYG00000030620) #24	CLDN16 (ENSTSYG00000008483) #25	TMEM207 (ENSTSYG00000000675) #26
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Hedgehog	MODERN SPECIES	7123																ENSEEUG00000013843 #22
Common shrew	MODERN SPECIES	5320																TP63 (ENSSARG00000012752) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Suina	ANCESTRAL SPECIES	1	ENSGT00950000182930.B	ENSGT01100000264223	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Pig	MODERN SPECIES	4	EIF4A2 (ENSSSCG00000011803) ##7	RFC4 (ENSSSCG00000011804) #8	ADIPOQ (ENSSSCG00000039103) #9	ST6GAL1 (ENSSSCG00000025770) #11	RTP1 (ENSSSCG00000037108) #12	MASP1 (ENSSSCG00000011806) #13	ENSSSCG00000061023 #15	ENSSSCG00000059088	SST (ENSSSCG00000033815) #16	RTP2 (ENSSSCG00000011809) #17	BCL6 (ENSSSCG00000011810) #18	ENSSSCG00000057877	LPP (ENSSSCG00000011811) #20	ENSSSCG00000043849	TPRG1 (ENSSSCG00000011812) #21	TP63 (ENSSSCG00000025592) #22	P3H2 (ENSSSCG00000011813) #23	CLDN1 (ENSSSCG00000040904) #24	CLDN16 (ENSSSCG00000024788) #25	TMEM207 (ENSSSCG00000022341) #26	ENSSSCG00000021206	GMNC (ENSSSCG00000024420) #28	OSTN (ENSSSCG00000031478) #29	UTS2B (ENSSSCG00000053547) #30	CCDC50 (ENSSSCG00000036423) #31	FGF12 (ENSSSCG00000038584) #33	ENSSSCG00000044432	MB21D2 (ENSSSCG00000011819) #34	ENSSSCG00000048327	PLAAT1 (ENSSSCG00000036094) #35	ATP13A5 (ENSSSCG00000026260) #36
Chacoan peccary	MODERN SPECIES	944	ENSCWAG00000019693	EIF4A2 (ENSCWAG00000019706) ##7	RFC4 (ENSCWAG00000019803) #8	ADIPOQ (ENSCWAG00000019841) #9	ST6GAL1 (ENSCWAG00000019858) #11	ENSCWAG00000019874	RTP1 (ENSCWAG00000019894) #12	MASP1 (ENSCWAG00000019919) #13	ENSCWAG00000019974 #15	SST (ENSCWAG00000019978) #16	RTP2 (ENSCWAG00000019985) #17	BCL6 (ENSCWAG00000019996) #18	ENSCWAG00000020023	LPP (ENSCWAG00000020035) #20	TPRG1 (ENSCWAG00000020051) #21	TP63 (ENSCWAG00000020115) #22	P3H2 (ENSCWAG00000021197) #23	CLDN1 (ENSCWAG00000021217) #24	CLDN16 (ENSCWAG00000021225) #25	TMEM207 (ENSCWAG00000021235) #26	IL1RAP (ENSCWAG00000021249) #27	GMNC (ENSCWAG00000021265) #28	OSTN (ENSCWAG00000021276) #29	UTS2B (ENSCWAG00000021288) #30	CCDC50 (ENSCWAG00000021300) #31	FGF12 (ENSCWAG00000021322) #33	MB21D2 (ENSCWAG00000011739) #34	PLAAT1 (ENSCWAG00000011773) #35	ATP13A5 (ENSCWAG00000011818) #36	ATP13A4 (ENSCWAG00000012173) #37	OPA1 (ENSCWAG00000012866)
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Camelidae	ANCESTRAL SPECIES		ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Arabian camel	MODERN SPECIES		HRG (ENSCDRG00005006527)	KNG1 (ENSCDRG00005006578)	EIF4A2 (ENSCDRG00005006739) ##7	RFC4 (ENSCDRG00005007030) #8	ADIPOQ (ENSCDRG00005007154) #9	ST6GAL1 (ENSCDRG00005007197) #11	RTP1 (ENSCDRG00005007254) #12	MASP1 (ENSCDRG00005007277) #13	ENSCDRG00005007382 #15	SST (ENSCDRG00005007384) #16	RTP2 (ENSCDRG00005007401) #17	BCL6 (ENSCDRG00005007418) #18	ENSCDRG00005007515	LPP (ENSCDRG00005007543) #20	TPRG1 (ENSCDRG00005007649) #21	TP63 (ENSCDRG00005007787) #22	P3H2 (ENSCDRG00005010783) #23	ENSCDRG00005010844	CLDN1 (ENSCDRG00005010879) #24	CLDN16 (ENSCDRG00005010916) #25	TMEM207 (ENSCDRG00005010976) #26	IL1RAP (ENSCDRG00005011046) #27	GMNC (ENSCDRG00005011210) #28	OSTN (ENSCDRG00005011267) #29	UTS2B (ENSCDRG00005011361) #30	CCDC50 (ENSCDRG00005011408) #31	FGF12 (ENSCDRG00005011577) #33	MB21D2 (ENSCDRG00005011736) #34	ENSCDRG00005011770	PLAAT1 (ENSCDRG00005011790) #35	ATP13A5 (ENSCDRG00005011840) #36
Alpaca	MODERN SPECIES	2852														LPP (ENSVPAG00000012347) #20	TPRG1 (ENSVPAG00000012349) #21	TP63 (ENSVPAG00000012350) #22	P3H2 (ENSVPAG00000012351) #23	CLDN1 (ENSVPAG00000012354) #24	CLDN16 (ENSVPAG00000012355) #25	TMEM207 (ENSVPAG00000012357) #26	IL1RAP (ENSVPAG00000012359) #27	ENSVPAG00000012360 #27	GMNC (ENSVPAG00000012361) #28	OSTN (ENSVPAG00000012362) #29	UTS2B (ENSVPAG00000012364) #30	CCDC50 (ENSVPAG00000012365) #31
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Cetacea	ANCESTRAL SPECIES	10	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327.j #36	ENSGT00940000160327.i #36	ENSGT00940000159448 #37
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327.j #36	ENSGT00940000160327.i #36	ENSGT00940000159448 #37
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b.c ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327.j #36	ENSGT00940000159448 #37	ENSGT00550000074851
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b.c ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183029.A	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327.j #36	ENSGT00940000159448 #37	ENSGT00550000074851
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b.c ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183029.A	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00970000194716	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327.j #36	ENSGT00940000159448 #37	ENSGT00550000074851
Beluga whale	MODERN SPECIES	111	ENSDLEG00000014425	ENSDLEG00000014421	EIF4A2 (ENSDLEG00000014344) ##7	RFC4 (ENSDLEG00000014316) #8	ADIPOQ (ENSDLEG00000014304) #9	ST6GAL1 (ENSDLEG00000014287) #11	RTP1 (ENSDLEG00000014277) #12	ENSDLEG00000014263	MASP1 (ENSDLEG00000014231) #13	ENSDLEG00000014201 #15	SST (ENSDLEG00000014194) #16	RTP2 (ENSDLEG00000014176) #17	BCL6 (ENSDLEG00000014141) #18	ENSDLEG00000014118	LPP (ENSDLEG00000014060) #20	TP63 (ENSDLEG00000014028) #22	P3H2 (ENSDLEG00000014000) #23	CLDN1 (ENSDLEG00000013985) #24	CLDN16 (ENSDLEG00000013947) #25	TMEM207 (ENSDLEG00000013928) #26	IL1RAP (ENSDLEG00000013874) #27	ENSDLEG00000013856	GMNC (ENSDLEG00000013848) #28	OSTN (ENSDLEG00000013834) #29	UTS2B (ENSDLEG00000013820) #30	ENSDLEG00000013808 #31	ENSDLEG00000013767	FGF12 (ENSDLEG00000013746) #33	MB21D2 (ENSDLEG00000013738) #34	PLAAT1 (ENSDLEG00000013734) #35	ENSDLEG00000013701 #36
Narwhal	MODERN SPECIES	297	ADIPOQ (ENSMMNG00015002186) #9	ST6GAL1 (ENSMMNG00015002165) #11	RTP1 (ENSMMNG00015002144) #12	ENSMMNG00015002133	MASP1 (ENSMMNG00015002086) #13	ENSMMNG00015002054 #15	SST (ENSMMNG00015002014) #16	RTP2 (ENSMMNG00015001993) #17	ENSMMNG00015001980	BCL6 (ENSMMNG00015001927) #18	ENSMMNG00015001911	ENSMMNG00015001892	LPP (ENSMMNG00015001868) #20	TPRG1 (ENSMMNG00015001838) #21	ENSMMNG00015001800	TP63 (ENSMMNG00015001263) #22	P3H2 (ENSMMNG00015000991) #23	CLDN1 (ENSMMNG00015000969) #24	CLDN16 (ENSMMNG00015000943) #25	TMEM207 (ENSMMNG00015000920) #26	IL1RAP (ENSMMNG00015000904) #27	ENSMMNG00015000885	GMNC (ENSMMNG00015000864) #28	OSTN (ENSMMNG00015000827) #29	UTS2B (ENSMMNG00015000803) #30	CCDC50 (ENSMMNG00015000742) #31	FGF12 (ENSMMNG00015000675) #33	MB21D2 (ENSMMNG00015000643) #34	PLAAT1 (ENSMMNG00015000616) #35	ENSMMNG00015000590 #36	ATP13A4 (ENSMMNG00015000483) #37
Vaquita	MODERN SPECIES	15	ENSPSNG00000006228	ENSPSNG00000006295 ##7	RFC4 (ENSPSNG00000009752) #8	ADIPOQ (ENSPSNG00000009849) #9	ST6GAL1 (ENSPSNG00000009897) #11	RTP1 (ENSPSNG00000009958) #12	ENSPSNG00000010008	MASP1 (ENSPSNG00000010078) #13	ENSPSNG00000010235 #15	SST (ENSPSNG00000010259) #16	RTP2 (ENSPSNG00000010300) #17	BCL6 (ENSPSNG00000010360) #18	ENSPSNG00000010530	LPP (ENSPSNG00000010571) #20	TPRG1 (ENSPSNG00000010703) #21	TP63 (ENSPSNG00000010992) #22	P3H2 (ENSPSNG00000012524) #23	CLDN1 (ENSPSNG00000012587) #24	CLDN16 (ENSPSNG00000012645) #25	TMEM207 (ENSPSNG00000012768) #26	IL1RAP (ENSPSNG00000012840) #27	GMNC (ENSPSNG00000012883) #28	OSTN (ENSPSNG00000013002) #29	UTS2B (ENSPSNG00000013104) #30	CCDC50 (ENSPSNG00000013184) #31	FGF12 (ENSPSNG00000013300) #33	MB21D2 (ENSPSNG00000013469) #34	PLAAT1 (ENSPSNG00000013517) #35	ENSPSNG00000013682 #36	ATP13A4 (ENSPSNG00000013737) #37	OPA1 (ENSPSNG00000014797)
Dolphin	MODERN SPECIES	4756																TP63 (ENSTTRG00000011638) #22
Sperm whale	MODERN SPECIES		FETUB (ENSPCTG00005010310)	KNG1 (ENSPCTG00005010416)	EIF4A2 (ENSPCTG00005010725) ##7	RFC4 (ENSPCTG00005010852) #8	ADIPOQ (ENSPCTG00005010931) #9	ST6GAL1 (ENSPCTG00005010963) #11	RTP1 (ENSPCTG00005011026) #12	ENSPCTG00005011052	MASP1 (ENSPCTG00005011116) #13	ENSPCTG00005011424 #15	ENSPCTG00005011443	SST (ENSPCTG00005011458) #16	RTP2 (ENSPCTG00005011500) #17	LPP (ENSPCTG00005011538) #20	ENSPCTG00005011642	TP63 (ENSPCTG00005011746) #22	P3H2 (ENSPCTG00005012805) #23	CLDN1 (ENSPCTG00005012944) #24	ENSPCTG00005012987	CLDN16 (ENSPCTG00005013068) #25	TMEM207 (ENSPCTG00005013237) #26	IL1RAP (ENSPCTG00005013329) #27	ENSPCTG00005013425	GMNC (ENSPCTG00005013478) #28	ENSPCTG00005013567	OSTN (ENSPCTG00005013650) #29	UTS2B (ENSPCTG00005013768) #30	ENSPCTG00005013863	CCDC50 (ENSPCTG00005013919) #31	ENSPCTG00005014030	FGF12 (ENSPCTG00005014058) #33
Blue whale	MODERN SPECIES	15	EIF4A2 (ENSBMSG00010009040) ##7	RFC4 (ENSBMSG00010009103) #8	ADIPOQ (ENSBMSG00010009114) #9	ST6GAL1 (ENSBMSG00010009124) #11	RTP1 (ENSBMSG00010009135) #12	MASP1 (ENSBMSG00010009153) #13	RTP4 (ENSBMSG00010009175) #15	ENSBMSG00010009179	SST (ENSBMSG00010009185) #16	RTP2 (ENSBMSG00010009198) #17	ENSBMSG00010009203	BCL6 (ENSBMSG00010009207) #18	ENSBMSG00010009218	LPP (ENSBMSG00010009229) #20	TPRG1 (ENSBMSG00010009246) #21	TP63 (ENSBMSG00010009317) #22	P3H2 (ENSBMSG00010009465) #23	CLDN1 (ENSBMSG00010009478) #24	CLDN16 (ENSBMSG00010009495) #25	TMEM207 (ENSBMSG00010009508) #26	IL1RAP (ENSBMSG00010009519) #27	GMNC (ENSBMSG00010009539) #28	ENSBMSG00010009554	OSTN (ENSBMSG00010009565) #29	ENSBMSG00010009595 #31	ENSBMSG00010009684	ENSBMSG00010009690	FGF12 (ENSBMSG00010009720) #33	MB21D2 (ENSBMSG00010009752) #34	PLAAT1 (ENSBMSG00010000066) #35	ENSBMSG00010000078 #36
Pecora	ANCESTRAL SPECIES	8	ENSGT00950000182930.B	ENSGT01100000264223	ENSGT00940000153783.b.b.c.a.b.f ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Percora_a	ANCESTRAL SPECIES	7	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b.f ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Bovidae	ANCESTRAL SPECIES	9	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b.f ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Caprinae	ANCESTRAL SPECIES	8	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b.f ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Goat	MODERN SPECIES		KNG1 (ENSCHIG00000011373)	EIF4A2 (ENSCHIG00000012317) ##7	RFC4 (ENSCHIG00000020822) #8	ADIPOQ (ENSCHIG00000026626) #9	ST6GAL1 (ENSCHIG00000013392) #11	ENSCHIG00000018592	RTP1 (ENSCHIG00000013228) #12	MASP1 (ENSCHIG00000016667) #13	ENSCHIG00000021716 #15	SST (ENSCHIG00000006692) #16	RTP2 (ENSCHIG00000017784) #17	BCL6 (ENSCHIG00000026477) #18	ENSCHIG00000000926	LPP (ENSCHIG00000021547) #20	TPRG1 (ENSCHIG00000004964) #21	TP63 (ENSCHIG00000023662) #22	P3H2 (ENSCHIG00000011298) #23	CLDN1 (ENSCHIG00000021260) #24	CLDN16 (ENSCHIG00000020420) #25	TMEM207 (ENSCHIG00000025327) #26	IL1RAP (ENSCHIG00000017471) #27	GMNC (ENSCHIG00000023300) #28	OSTN (ENSCHIG00000021138) #29	UTS2B (ENSCHIG00000012258) #30	CCDC50 (ENSCHIG00000019160) #31	ENSCHIG00000007644	FGF12 (ENSCHIG00000015401) #33	MB21D2 (ENSCHIG00000020817) #34	PLAAT1 (ENSCHIG00000025900) #35	ATP13A5 (ENSCHIG00000011142) #36	ATP13A4 (ENSCHIG00000012653) #37
Rambouillet Sheep	MODERN SPECIES		KNG1 (ENSOARG00020000529)	ENSOARG00020000452 ##7	RFC4 (ENSOARG00020000418) #8	ADIPOQ (ENSOARG00020000398) #9	ST6GAL1 (ENSOARG00020000376) #11	RTP1 (ENSOARG00020000358) #12	MASP1 (ENSOARG00020000314) #13	RTP4 (ENSOARG00020000286) #15	ENSOARG00020000272 #17	SST (ENSOARG00020000243) #16	ENSOARG00020000202 #17	BCL6 (ENSOARG00020000143) #18	ENSOARG00020025173	LPP (ENSOARG00020025122) #20	TPRG1 (ENSOARG00020025106) #21	TP63 (ENSOARG00020024283) #22	P3H2 (ENSOARG00020024146) #23	CLDN1 (ENSOARG00020024128) #24	CLDN16 (ENSOARG00020024100) #25	TMEM207 (ENSOARG00020024073) #26	IL1RAP (ENSOARG00020024021) #27	OSTN (ENSOARG00020023965) #29	UTS2B (ENSOARG00020023938) #30	ENSOARG00020023771	ENSOARG00020023762	ENSOARG00020023707	FGF12 (ENSOARG00020023617) #33	MB21D2 (ENSOARG00020023583) #34	PLAAT1 (ENSOARG00020023562) #35	ATP13A5 (ENSOARG00020023358) #36	ATP13A4 (ENSOARG00020023240) #37
Bovinae	ANCESTRAL SPECIES	6	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b.f ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00970000194716	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000153270.b.b #28	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Bos	ANCESTRAL SPECIES	7	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b.f.a ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000155476.r	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00970000194716	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000153270.b.b #28	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000153783.b.b.c.a.b.f.a ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000155476.r	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT01100000263481.n.a.b.a.b.a.b.a.a.b.b.b	ENSGT00940000162286.a.a.e.b.b.a.a.a.a	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00970000196977	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Cow	MODERN SPECIES		EIF4A2 (ENSBTAG00000014724) ##7	RFC4 (ENSBTAG00000014727) #8	ADIPOQ (ENSBTAG00000052213) #9	ENSBTAG00000006872	ST6GAL1 (ENSBTAG00000010357) #11	RTP1 (ENSBTAG00000012706) #12	MASP1 (ENSBTAG00000012467) #13	RTP4 (ENSBTAG00000032265) #15	SST (ENSBTAG00000017312) #16	RTP2 (ENSBTAG00000003179) #17	BCL6 (ENSBTAG00000001511) #18	ENSBTAG00000049984	LPP (ENSBTAG00000044001) #20	TPRG1 (ENSBTAG00000032538) #21	ENSBTAG00000053900	TP63 (ENSBTAG00000015460) #22	P3H2 (ENSBTAG00000021025) #23	CLDN1 (ENSBTAG00000013148) #24	CLDN16 (ENSBTAG00000006494) #25	TMEM207 (ENSBTAG00000013456) #26	IL1RAP (ENSBTAG00000013205) #27	GMNC (ENSBTAG00000051592) #28	ENSBTAG00000050537	OSTN (ENSBTAG00000018703) #29	UTS2B (ENSBTAG00000044148) #30	CCDC50 (ENSBTAG00000006945) #31	ENSBTAG00000054301	FGF12 (ENSBTAG00000012413) #33	MB21D2 (ENSBTAG00000005430) #34	PLAAT1 (ENSBTAG00000035844) #35	ATP13A5 (ENSBTAG00000018657) #36
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005006290 ##7	RFC4 (ENSBIXG00005007394) #8	ADIPOQ (ENSBIXG00005024631) #9	ENSBIXG00005024642	ST6GAL1 (ENSBIXG00005024731) #11	RTP1 (ENSBIXG00005024774) #12	MASP1 (ENSBIXG00005024924) #13	ENSBIXG00005024980 #15	SST (ENSBIXG00005025003) #16	RTP2 (ENSBIXG00005025018) #17	BCL6 (ENSBIXG00005025078) #18	ENSBIXG00005025147	ENSBIXG00005025160	LPP (ENSBIXG00005004284) #20	TPRG1 (ENSBIXG00005025267) #21	TP63 (ENSBIXG00005025509) #22	P3H2 (ENSBIXG00005025614) #23	CLDN1 (ENSBIXG00005004371) #24	CLDN16 (ENSBIXG00005025682) #25	TMEM207 (ENSBIXG00005025717) #26	ENSBIXG00005004391	IL1RAP (ENSBIXG00005025810) #27	GMNC (ENSBIXG00005025876) #28	OSTN (ENSBIXG00005025981) #29	UTS2B (ENSBIXG00005025999) #30	CCDC50 (ENSBIXG00005026051) #31	ENSBIXG00005026076	FGF12 (ENSBIXG00005026154) #33	ENSBIXG00005026210	MB21D2 (ENSBIXG00005026221) #34	PLAAT1 (ENSBIXG00005026278) #35
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000153783.b.b.c.a.b.f.a.a ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000155476.r	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00970000194716	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00960000190428	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00950000182901.a.a.b.b.a.a.d.o.a	ENSGT00940000153270.b.b #28	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Domestic yak	MODERN SPECIES		ENSBGRG00000001272 #15	SST (ENSBGRG00000001258) #16	RTP2 (ENSBGRG00000001250) #17	ENSBGRG00000001245	BCL6 (ENSBGRG00000001201) #18	ENSBGRG00000001179	ENSBGRG00000001164	ENSBGRG00000001157	LPP (ENSBGRG00000001121) #20	ENSBGRG00000001113	ENSBGRG00000001105	ENSBGRG00000001099	ENSBGRG00000001094	TPRG1 (ENSBGRG00000001062) #21	ENSBGRG00000001043	TP63 (ENSBGRG00000000889) #22	P3H2 (ENSBGRG00000000817) #23	CLDN1 (ENSBGRG00000000800) #24	CLDN16 (ENSBGRG00000000794) #25	TMEM207 (ENSBGRG00000000757) #26	ENSBGRG00000000718 #27	ENSBGRG00000000707 #27	ENSBGRG00000000686	GMNC (ENSBGRG00000000645) #28	ENSBGRG00000000635	OSTN (ENSBGRG00000000606) #29	ENSBGRG00000000579 #30	CCDC50 (ENSBGRG00000000499) #31	FGF12 (ENSBGRG00000000418) #33	ENSBGRG00000000390	ENSBGRG00000000382
Wild yak	MODERN SPECIES	923																TP63 (ENSBMUG00000013924) #22	P3H2 (ENSBMUG00000014350) #23	CLDN1 (ENSBMUG00000014356) #24	CLDN16 (ENSBMUG00000014371) #25	TMEM207 (ENSBMUG00000014385) #26	IL1RAP (ENSBMUG00000014460) #27	ENSBMUG00000014480	GMNC (ENSBMUG00000014483) #28	ENSBMUG00000014493
American bison	MODERN SPECIES	3208																TP63 (ENSBBBG00000021297) #22	P3H2 (ENSBBBG00000021369) #23	CLDN1 (ENSBBBG00000021383) #24	CLDN16 (ENSBBBG00000021401) #25	TMEM207 (ENSBBBG00000021413) #26	IL1RAP (ENSBBBG00000021436) #27	ENSBBBG00000021441	GMNC (ENSBBBG00000021447) #28	ENSBBBG00000021454	OSTN (ENSBBBG00000008403) #29	UTS2B (ENSBBBG00000021479) #30	CCDC50 (ENSBBBG00000021524) #31
Siberian musk deer	MODERN SPECIES	139	ENSMMSG00000007944 ##7	RFC4 (ENSMMSG00000007879) #8	ADIPOQ (ENSMMSG00000007852) #9	ENSMMSG00000007828	ST6GAL1 (ENSMMSG00000007804) #11	RTP1 (ENSMMSG00000007782) #12	MASP1 (ENSMMSG00000007706) #13	ENSMMSG00000007640 #15	SST (ENSMMSG00000007618) #16	RTP2 (ENSMMSG00000007598) #17	ENSMMSG00000007583	BCL6 (ENSMMSG00000007540) #18	LPP (ENSMMSG00000007492) #20	TPRG1 (ENSMMSG00000007460) #21	ENSMMSG00000007441	TP63 (ENSMMSG00000005764) #22	P3H2 (ENSMMSG00000005604) #23	CLDN1 (ENSMMSG00000005564) #24	ENSMMSG00000005551	CLDN16 (ENSMMSG00000005518) #25	TMEM207 (ENSMMSG00000005477) #26	IL1RAP (ENSMMSG00000005433) #27	GMNC (ENSMMSG00000005391) #28	ENSMMSG00000005379
Yarkand deer	MODERN SPECIES	10	KNG1 (ENSCHYG00000019607)	ENSCHYG00000019542	EIF4A2 (ENSCHYG00000019111) ##7	RFC4 (ENSCHYG00000018948) #8	ADIPOQ (ENSCHYG00000018894) #9	ST6GAL1 (ENSCHYG00000018718) #11	RTP1 (ENSCHYG00000018654) #12	MASP1 (ENSCHYG00000018005) #13	ENSCHYG00000017786 #15	SST (ENSCHYG00000017690) #16	RTP2 (ENSCHYG00000017671) #17	BCL6 (ENSCHYG00000017496) #18	LPP (ENSCHYG00000017341) #20	ENSCHYG00000017326	TPRG1 (ENSCHYG00000017253) #21	TP63 (ENSCHYG00000016948) #22	P3H2 (ENSCHYG00000016707) #23	CLDN1 (ENSCHYG00000016635) #24	CLDN16 (ENSCHYG00000016587) #25	TMEM207 (ENSCHYG00000016540) #26	IL1RAP (ENSCHYG00000016282) #27	GMNC (ENSCHYG00000016158) #28	OSTN (ENSCHYG00000015998) #29	UTS2B (ENSCHYG00000015889) #30	CCDC50 (ENSCHYG00000015774) #31	ENSCHYG00000015730	FGF12 (ENSCHYG00000015431) #33	ENSCHYG00000015377	MB21D2 (ENSCHYG00000015341) #34	PLAAT1 (ENSCHYG00000015170) #35	ATP13A5 (ENSCHYG00000014857) #36
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Carnivora	ANCESTRAL SPECIES	10	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Caniformia	ANCESTRAL SPECIES		ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Canidae	ANCESTRAL SPECIES	43	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00390000011700
Canis_lupus	ANCESTRAL SPECIES	41	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00390000011700
Dog	MODERN SPECIES	27	HRG (ENSCAFG00845021042)	KNG1 (ENSCAFG00845021120)	ENSCAFG00845021411	ADIPOQ (ENSCAFG00845021484) ##7	RFC4 (ENSCAFG00845021789) #8	ADIPOQ (ENSCAFG00845021949) #9	ST6GAL1 (ENSCAFG00845022028) #11	RTP1 (ENSCAFG00845022091) #12	MASP1 (ENSCAFG00845022197) #13	ENSCAFG00845022631 #15	SST (ENSCAFG00845022661) #16	BCL6 (ENSCAFG00845022776) #18	ENSCAFG00845023084	LPP (ENSCAFG00845023138) #20	TPRG1 (ENSCAFG00845023344) #21	TP63 (ENSCAFG00845023542) #22	P3H2 (ENSCAFG00845023995) #23	CLDN1 (ENSCAFG00845024289) #24	CLDN16 (ENSCAFG00845024328) #25	TMEM207 (ENSCAFG00845024384) #26	IL1RAP (ENSCAFG00845024451) #27	GMNC (ENSCAFG00845024693) #28	OSTN (ENSCAFG00845024742) #29	UTS2B (ENSCAFG00845024789) #30	ENSCAFG00845024870 #31	FGF12 (ENSCAFG00845025170) #33	MB21D2 (ENSCAFG00845025337) #34	PLAAT1 (ENSCAFG00845025371) #35	ATP13A5 (ENSCAFG00845025427) #36	ENSCAFG00845025551 #37	MFSD1 (ENSCAFG00845025917)
Dingo	MODERN SPECIES	317											SST (ENSCAFG00020019995) #16	RTP2 (ENSCAFG00020019997) #17	BCL6 (ENSCAFG00020020000) #18	LPP (ENSCAFG00020020014) #20	TPRG1 (ENSCAFG00020020027) #21	TP63 (ENSCAFG00020020037) #22	P3H2 (ENSCAFG00020020127) #23	CLDN1 (ENSCAFG00020020148) #24	CLDN16 (ENSCAFG00020020151) #25	TMEM207 (ENSCAFG00020020153) #26	ENSCAFG00020020157 #27	GMNC (ENSCAFG00020020161) #28	OSTN (ENSCAFG00020020164) #29	UTS2B (ENSCAFG00020020166) #30	CCDC50 (ENSCAFG00020020170) #31	FGF12 (ENSCAFG00020020175) #33	MB21D2 (ENSCAFG00020020181) #34	PLAAT1 (ENSCAFG00020020183) #35	ATP13A5 (ENSCAFG00020020185) #36	ENSCAFG00020020188	ATP13A4 (ENSCAFG00020020190) #37
Red fox	MODERN SPECIES	63	ENSVVUG00000013207	KNG1 (ENSVVUG00000013228)	ENSVVUG00000013239	EIF4A2 (ENSVVUG00000013242) ##7	RFC4 (ENSVVUG00000013256) #8	ADIPOQ (ENSVVUG00000013262) #9	ST6GAL1 (ENSVVUG00000013273) #11	RTP1 (ENSVVUG00000013295) #12	MASP1 (ENSVVUG00000013322) #13	ENSVVUG00000013339 #15	SST (ENSVVUG00000013351) #16	RTP2 (ENSVVUG00000013353) #17	BCL6 (ENSVVUG00000013355) #18	LPP (ENSVVUG00000013382) #20	TPRG1 (ENSVVUG00000013400) #21	TP63 (ENSVVUG00000013408) #22	P3H2 (ENSVVUG00000013454) #23	CLDN1 (ENSVVUG00000013606) #24	CLDN16 (ENSVVUG00000013608) #25	TMEM207 (ENSVVUG00000013612) #26	IL1RAP (ENSVVUG00000013626) #27	GMNC (ENSVVUG00000013674) #28	OSTN (ENSVVUG00000013688) #29	UTS2B (ENSVVUG00000013699) #30	CCDC50 (ENSVVUG00000013709) #31
Caniformia_b	ANCESTRAL SPECIES		ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Ursidae	ANCESTRAL SPECIES	1	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000153558.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Ursus	ANCESTRAL SPECIES	22	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000153558.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
American black bear	MODERN SPECIES	1719																TP63 (ENSUAMG00000006562) #22	P3H2 (ENSUAMG00000006549) #23
Polar bear	MODERN SPECIES	270	HRG (ENSUMAG00000004314)	KNG1 (ENSUMAG00000004267)	ENSUMAG00000004260	EIF4A2 (ENSUMAG00000004240) ##7	RFC4 (ENSUMAG00000004232) #8	ENSUMAG00000004221 #9	ST6GAL1 (ENSUMAG00000004214) #11	RTP1 (ENSUMAG00000004202) #12	MASP1 (ENSUMAG00000004082) #13	ENSUMAG00000004042 #15	SST (ENSUMAG00000004039) #16	RTP2 (ENSUMAG00000004030) #17	BCL6 (ENSUMAG00000004023) #18	LPP (ENSUMAG00000004009) #20	TPRG1 (ENSUMAG00000003984) #21	TP63 (ENSUMAG00000003864) #22	P3H2 (ENSUMAG00000003698) #23	CLDN1 (ENSUMAG00000003671) #24	CLDN16 (ENSUMAG00000003649) #25	TMEM207 (ENSUMAG00000003631) #26	IL1RAP (ENSUMAG00000003608) #27	OSTN (ENSUMAG00000003599) #29	UTS2B (ENSUMAG00000003588) #30	CCDC50 (ENSUMAG00000003555) #31	ENSUMAG00000003534	FGF12 (ENSUMAG00000003529) #33	MB21D2 (ENSUMAG00000003520) #34	PLAAT1 (ENSUMAG00000003507) #35	ATP13A5 (ENSUMAG00000003463) #36	ATP13A4 (ENSUMAG00000003397) #37	OPA1 (ENSUMAG00000001214)
Giant Panda	MODERN SPECIES		HRG (ENSAMEG00000001013)	KNG1 (ENSAMEG00000000994)	EIF4A2 (ENSAMEG00000000966) ##7	RFC4 (ENSAMEG00000000941) #8	ADIPOQ (ENSAMEG00000027544) #9	ST6GAL1 (ENSAMEG00000000924) #11	RTP1 (ENSAMEG00000023750) #12	MASP1 (ENSAMEG00000000843) #13	ENSAMEG00000028666 #15	SST (ENSAMEG00000026741) #16	RTP2 (ENSAMEG00000000837) #17	ENSAMEG00000028266	BCL6 (ENSAMEG00000000812) #18	LPP (ENSAMEG00000000808) #20	TPRG1 (ENSAMEG00000000807) #21	TP63 (ENSAMEG00000000763) #22	P3H2 (ENSAMEG00000000726) #23	CLDN1 (ENSAMEG00000029375) #24	CLDN16 (ENSAMEG00000011529) #25	TMEM207 (ENSAMEG00000011541) #26	IL1RAP (ENSAMEG00000011547) #27	GMNC (ENSAMEG00000029444) #28	OSTN (ENSAMEG00000011573) #29	UTS2B (ENSAMEG00000011579) #30	CCDC50 (ENSAMEG00000011582) #31	ENSAMEG00000031103	FGF12 (ENSAMEG00000008849) #33	MB21D2 (ENSAMEG00000027048) #34	PLAAT1 (ENSAMEG00000015962) #35	ATP13A5 (ENSAMEG00000015940) #36	ATP13A4 (ENSAMEG00000015895) #37
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
American mink	MODERN SPECIES	129	ENSNVIG00000020176	EIF4A2 (ENSNVIG00000020187) ##7	RFC4 (ENSNVIG00000020232) #8	ADIPO (ENSNVIG00000020254) #9	ST6GAL1 (ENSNVIG00000020268) #11	RTP1 (ENSNVIG00000020325) #12	MASP1 (ENSNVIG00000020351) #13	ENSNVIG00000020439 #15	SMS (ENSNVIG00000020446) #16	RTP2 (ENSNVIG00000020452) #17	BCL6 (ENSNVIG00000020463) #18	LPP (ENSNVIG00000020508) #20	ENSNVIG00000020550	ENSNVIG00000020557	TPRG1 (ENSNVIG00000020567) #21	TP63 (ENSNVIG00000020598) #22	P3H2 (ENSNVIG00000020935) #23	ENSNVIG00000020968	CLDN1 (ENSNVIG00000020982) #24	CLDN16 (ENSNVIG00000020988) #25	TMEM207 (ENSNVIG00000021009) #26	IL1RAP (ENSNVIG00000021025) #27
Ferret	MODERN SPECIES	176	KNG1 (ENSMPUG00000003248)	EIF4A2 (ENSMPUG00000003326) ##7	RFC4 (ENSMPUG00000003336) #8	ADIPOQ (ENSMPUG00000003346) #9	ST6GAL1 (ENSMPUG00000003351) #11	RTP1 (ENSMPUG00000003359) #12	MASP1 (ENSMPUG00000003368) #13	RTP4 (ENSMPUG00000003380) #15	SST (ENSMPUG00000003389) #16	RTP2 (ENSMPUG00000003405) #17	BCL6 (ENSMPUG00000003415) #18	ENSMPUG00000003420	LPP (ENSMPUG00000003425) #20	TPRG1 (ENSMPUG00000003430) #21	ENSMPUG00000003435	TP63 (ENSMPUG00000003438) #22	P3H2 (ENSMPUG00000003446) #23	CLDN1 (ENSMPUG00000003456) #24	CLDN16 (ENSMPUG00000003460) #25	TMEM207 (ENSMPUG00000003478) #26	IL1RAP (ENSMPUG00000003482) #27	ENSMPUG00000003491 #28	OSTN (ENSMPUG00000003495) #29	ENSMPUG00000003503	CCDC50 (ENSMPUG00000003543) #31	ENSMPUG00000003555	FGF12 (ENSMPUG00000003559) #33	ENSMPUG00000018878	MB21D2 (ENSMPUG00000003566) #34	PLAAT1 (ENSMPUG00000003572) #35	ATP13A5 (ENSMPUG00000003578) #36
Felidae	ANCESTRAL SPECIES	9	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053.g #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000158744.n	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Panthera	ANCESTRAL SPECIES	12	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053.g #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000158744.n	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Panthera_a	ANCESTRAL SPECIES	46	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053.g #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000158744.n	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000153112.E.f.a.a	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34
leopard	MODERN SPECIES	41	KNG1 (ENSPPRG00000009956)	ENSPPRG00000007908	EIF4A2 (ENSPPRG00000007860) ##7	RFC4 (ENSPPRG00000006874) #8	ADIPOQ (ENSPPRG00000004418) #9	ENSPPRG00000002837 #11	RTP1 (ENSPPRG00000002296) #12	MASP1 (ENSPPRG00000002042) #13	ENSPPRG00000001304 #15	SST (ENSPPRG00000001065) #16	RTP2 (ENSPPRG00000000964) #17	BCL6 (ENSPPRG00000000750) #18	ENSPPRG00000017635	LPP (ENSPPRG00000000181) #20	TPRG1 (ENSPPRG00000023849) #21	TP63 (ENSPPRG00000024443) #22	P3H2 (ENSPPRG00000014656) #23	CLDN1 (ENSPPRG00000013335) #24	CLDN16 (ENSPPRG00000012880) #25	TMEM207 (ENSPPRG00000012415) #26	IL1RAP (ENSPPRG00000011868) #27	ENSPPRG00000005651	GMNC (ENSPPRG00000005276) #28	OSTN (ENSPPRG00000005025) #29	UTS2B (ENSPPRG00000004799) #30	CCDC50 (ENSPPRG00000004419) #31	ENSPPRG00000003782	ENSPPRG00000016869	FGF12 (ENSPPRG00000003163) #33	MB21D2 (ENSPPRG00000002734) #34
lion	MODERN SPECIES	9	ENSPLOG00000004884	EIF4A2 (ENSPLOG00000004843) ##7	RFC4 (ENSPLOG00000004813) #8	ADIPOQ (ENSPLOG00000004774) #9	ST6GAL1 (ENSPLOG00000004749) #11	ENSPLOG00000004738	RTP1 (ENSPLOG00000021260) #12	MASP1 (ENSPLOG00000021157) #13	ENSPLOG00000021110 #15	SST (ENSPLOG00000021093) #16	RTP2 (ENSPLOG00000021075) #17	BCL6 (ENSPLOG00000021028) #18	ENSPLOG00000020999	LPP (ENSPLOG00000020973) #20	TPRG1 (ENSPLOG00000020945) #21	TP63 (ENSPLOG00000020266) #22	P3H2 (ENSPLOG00000019953) #23	CLDN1 (ENSPLOG00000019915) #24	CLDN16 (ENSPLOG00000019832) #25	TMEM207 (ENSPLOG00000019781) #26	IL1RAP (ENSPLOG00000019736) #27	ENSPLOG00000019707	GMNC (ENSPLOG00000019676) #28	OSTN (ENSPLOG00000019626) #29	UTS2B (ENSPLOG00000019582) #30	CCDC50 (ENSPLOG00000019549) #31	ENSPLOG00000019518	FGF12 (ENSPLOG00000019425) #33	MB21D2 (ENSPLOG00000019380) #34	ENSPLOG00000019346	B3GNT5 (ENSPLOG00000019335)
Tiger	MODERN SPECIES	186	KNG1 (ENSPTIG00000014477)	ENSPTIG00000013900	EIF4A2 (ENSPTIG00000011207) ##7	RFC4 (ENSPTIG00000010216) #8	ADIPOQ (ENSPTIG00000009239) #9	ST6GAL1 (ENSPTIG00000008540) #11	RTP1 (ENSPTIG00000008237) #12	MASP1 (ENSPTIG00000003863) #13	ENSPTIG00000001509 #15	SST (ENSPTIG00000000097) #16	RTP2 (ENSPTIG00000022101) #17	ENSPTIG00000002216	BCL6 (ENSPTIG00000022010) #18	LPP (ENSPTIG00000021260) #20	TPRG1 (ENSPTIG00000020804) #21	TP63 (ENSPTIG00000019632) #22	P3H2 (ENSPTIG00000016608) #23	CLDN1 (ENSPTIG00000015844) #24	CLDN16 (ENSPTIG00000014978) #25	TMEM207 (ENSPTIG00000014639) #26	IL1RAP (ENSPTIG00000005696) #27	GMNC (ENSPTIG00000002630) #28	OSTN (ENSPTIG00000021737) #29	UTS2B (ENSPTIG00000021448) #30	CCDC50 (ENSPTIG00000018029) #31	ENSPTIG00000000734	FGF12 (ENSPTIG00000016372) #33	MB21D2 (ENSPTIG00000015590) #34	PLAAT1 (ENSPTIG00000014270) #35	ATP13A5 (ENSPTIG00000011260) #36
Cat	MODERN SPECIES	240	KNG1 (ENSFCAG00000013880)	ENSFCAG00000032434	EIF4A2 (ENSFCAG00000013883) ##7	RFC4 (ENSFCAG00000013884) #8	ADIPOQ (ENSFCAG00000013885) #9	ST6GAL1 (ENSFCAG00000013886) #11	RTP1 (ENSFCAG00000036543) #12	MASP1 (ENSFCAG00000010906) #13	RTP4 (ENSFCAG00000042741) #15	SST (ENSFCAG00000033329) #16	RTP2 (ENSFCAG00000029548) #17	BCL6 (ENSFCAG00000006810) #18	ENSFCAG00000041786	LPP (ENSFCAG00000006814) #20	TPRG1 (ENSFCAG00000002008) #21	TP63 (ENSFCAG00000000790) #22	P3H2 (ENSFCAG00000000791) #23	CLDN1 (ENSFCAG00000039047) #24	CLDN16 (ENSFCAG00000003329) #25	TMEM207 (ENSFCAG00000035479) #26	IL1RAP (ENSFCAG00000018587) #27	ENSFCAG00000006328	GMNC (ENSFCAG00000009204) #28	OSTN (ENSFCAG00000024574) #29	UTS2B (ENSFCAG00000041952) #30	CCDC50 (ENSFCAG00000026775) #31	FGF12 (ENSFCAG00000025224) #33	MB21D2 (ENSFCAG00000043235) #34	PLAAT1 (ENSFCAG00000000692) #35	ATP13A5 (ENSFCAG00000000693) #36	ATP13A4 (ENSFCAG00000042898) #37
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Equus	ANCESTRAL SPECIES	19	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00860000135739	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Donkey	MODERN SPECIES	25	HRG (ENSEASG00005014069)	KNG1 (ENSEASG00005014080)	ENSEASG00005014092	EIF4A2 (ENSEASG00005014096) ##7	RFC4 (ENSEASG00005014105) #8	ADIPOQ (ENSEASG00005033942) #9	ST6GAL1 (ENSEASG00005014107) #11	RTP1 (ENSEASG00005031497) #12	MASP1 (ENSEASG00005014109) #13	ENSEASG00005014111 #15	SST (ENSEASG00005028121) #16	RTP2 (ENSEASG00005014113) #17	BCL6 (ENSEASG00005014114) #18	LPP (ENSEASG00005014117) #20	TPRG1 (ENSEASG00005000079) #21	TP63 (ENSEASG00005000161) #22	P3H2 (ENSEASG00005000187) #23	ENSEASG00005037818	CLDN1 (ENSEASG00005025461) #24	CLDN16 (ENSEASG00005038191) #25	TMEM207 (ENSEASG00005025466) #26	ENSEASG00005000289 #27	ENSEASG00005029545 #27	GMNC (ENSEASG00005038756) #28	OSTN (ENSEASG00005000308) #29	UTS2B (ENSEASG00005027479) #30	CCDC50 (ENSEASG00005000324) #31	FGF12 (ENSEASG00005025383) #33	MB21D2 (ENSEASG00005000343) #34	PLAAT1 (ENSEASG00005000347) #35	ATP13A5 (ENSEASG00005000377) #36
Horse	MODERN SPECIES	10	HRG (ENSECAG00000013388)	KNG1 (ENSECAG00000014646)	ENSECAG00000028550	EIF4A2 (ENSECAG00000021223) ##7	RFC4 (ENSECAG00000022599) #8	ADIPOQ (ENSECAG00000002962) #9	ST6GAL1 (ENSECAG00000003569) #11	RTP1 (ENSECAG00000006754) #12	MASP1 (ENSECAG00000008259) #13	RTP4 (ENSECAG00000023264) #15	SST (ENSECAG00000023368) #16	RTP2 (ENSECAG00000000272) #17	BCL6 (ENSECAG00000004556) #18	LPP (ENSECAG00000014723) #20	TPRG1 (ENSECAG00000016072) #21	TP63 (ENSECAG00000018546) #22	ENSECAG00000044253	P3H2 (ENSECAG00000008971) #23	CLDN1 (ENSECAG00000021074) #24	CLDN16 (ENSECAG00000021850) #25	TMEM207 (ENSECAG00000033613) #26	IL1RAP (ENSECAG00000005083) #27	GMNC (ENSECAG00000027817) #28	OSTN (ENSECAG00000011502) #29	UTS2B (ENSECAG00000014512) #30	CCDC50 (ENSECAG00000014753) #31	FGF12 (ENSECAG00000024399) #33	MB21D2 (ENSECAG00000004811) #34	PLAAT1 (ENSECAG00000024565) #35	ATP13A5 (ENSECAG00000024692) #36	ATP13A4 (ENSECAG00000013520) #37
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00940000153783.b.b.c.a.a.a #7	ENSGT01100000264223	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00950000182930.B	ENSGT01100000264223	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Greater horseshoe bat	MODERN SPECIES	11	ENSRFEG00010010830	ENSRFEG00010010586 ##7	RFC4 (ENSRFEG00010010503) #8	ADIPOQ (ENSRFEG00010010452) #9	ENSRFEG00010010432	ST6GAL1 (ENSRFEG00010010358) #11	RTP1 (ENSRFEG00010010304) #12	MASP1 (ENSRFEG00010010180) #13	ENSRFEG00010010132 #15	SST (ENSRFEG00010020558) #16	RTP2 (ENSRFEG00010020536) #17	ENSRFEG00010020523	BCL6 (ENSRFEG00010020473) #18	LPP (ENSRFEG00010020443) #20	TPRG1 (ENSRFEG00010020397) #21	TP63 (ENSRFEG00010019772) #22	P3H2 (ENSRFEG00010019654) #23	CLDN1 (ENSRFEG00010019632) #24	CLDN16 (ENSRFEG00010019557) #25	TMEM207 (ENSRFEG00010019513) #26	IL1RAP (ENSRFEG00010019458) #27	GMNC (ENSRFEG00010019408) #28	OSTN (ENSRFEG00010019354) #29	UTS2B (ENSRFEG00010019299) #30	CCDC50 (ENSRFEG00010019227) #31	FGF12 (ENSRFEG00010019116) #33	MB21D2 (ENSRFEG00010019087) #34	PLAAT1 (ENSRFEG00010019048) #35	ATP13A5 (ENSRFEG00010018763) #36	ATP13A4 (ENSRFEG00010018636) #37	OPA1 (ENSRFEG00010018391)
Microbat	MODERN SPECIES	951	HRG (ENSMLUG00000013346)	KNG1 (ENSMLUG00000013353)	ENSMLUG00000022708	EIF4A2 (ENSMLUG00000016392) ##7	RFC4 (ENSMLUG00000016401) #8	ADIPOQ (ENSMLUG00000000440) #9	ST6GAL1 (ENSMLUG00000015302) #11	RTP1 (ENSMLUG00000006162) #12	MASP1 (ENSMLUG00000006168) #13	ENSMLUG00000006180 #15	SST (ENSMLUG00000012903) #16	RTP2 (ENSMLUG00000015480) #17	BCL6 (ENSMLUG00000012905) #18	LPP (ENSMLUG00000009198) #20	TPRG1 (ENSMLUG00000009219) #21	TP63 (ENSMLUG00000015597) #22	P3H2 (ENSMLUG00000015613) #23	CLDN1 (ENSMLUG00000015642) #24	CLDN16 (ENSMLUG00000001753) #25	IL1RAP (ENSMLUG00000005737) #27	GMNC (ENSMLUG00000012539) #28	OSTN (ENSMLUG00000017299) #29	ENSMLUG00000024518	CCDC50 (ENSMLUG00000012788) #31	FGF12 (ENSMLUG00000010464) #33	PLAAT1 (ENSMLUG00000008414) #35	ATP13A5 (ENSMLUG00000010577) #36	ATP13A4 (ENSMLUG00000008427) #37	OPA1 (ENSMLUG00000008480)	ENSMLUG00000008079	HES1 (ENSMLUG00000008549)
Megabat	MODERN SPECIES	2930															TPRG1 (ENSPVAG00000009055) #21	TP63 (ENSPVAG00000009056) #22	P3H2 (ENSPVAG00000009057) #23
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00950000182930.A.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00560000078510	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Afrotheria	ANCESTRAL SPECIES	17	ENSGT00940000155792	ENSGT00950000182930.C	ENSGT00950000182930.A.b	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Afrotheria_a	ANCESTRAL SPECIES	16	ENSGT00950000182930.C	ENSGT00950000182930.A.b	ENSGT00950000182930.B	ENSGT00940000153783.b.b.c.a.b ##7	ENSGT00550000074917 #8	ENSGT00940000159828 #9	ENSGT00940000157053 #11	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00940000162610 #15	ENSGT00510000047914.b #16	ENSGT00940000162172 #17	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Elephant	MODERN SPECIES	261	AHSG (ENSLAFG00000007460)	FETUB (ENSLAFG00000005268)	KNG1 (ENSLAFG00000010592)	EIF4A2 (ENSLAFG00000003619) ##7	RFC4 (ENSLAFG00000029325) #8	ADIPOQ (ENSLAFG00000003626) #9	ST6GAL1 (ENSLAFG00000004790) #11	RTP1 (ENSLAFG00000022726) #12	MASP1 (ENSLAFG00000010815) #13	ENSLAFG00000027127 #15	SST (ENSLAFG00000012303) #16	RTP2 (ENSLAFG00000031797) #17	BCL6 (ENSLAFG00000012300) #18	LPP (ENSLAFG00000011164) #20	TPRG1 (ENSLAFG00000004575) #21	TP63 (ENSLAFG00000031461) #22	P3H2 (ENSLAFG00000007727) #23	CLDN1 (ENSLAFG00000008035) #24	CLDN16 (ENSLAFG00000008037) #25	IL1RAP (ENSLAFG00000018066) #27	GMNC (ENSLAFG00000022635) #28	OSTN (ENSLAFG00000000875) #29	UTS2B (ENSLAFG00000026160) #30	CCDC50 (ENSLAFG00000013101) #31	FGF12 (ENSLAFG00000013222) #33	MB21D2 (ENSLAFG00000006749) #34	PLAAT1 (ENSLAFG00000008441) #35	ATP13A5 (ENSLAFG00000016216) #36	ATP13A4 (ENSLAFG00000001360) #37	OPA1 (ENSLAFG00000001362)	HES1 (ENSLAFG00000008932)
Hyrax	MODERN SPECIES	6231																TP63 (ENSPCAG00000005011) #22
Tenrec	MODERN SPECIES	6544																ENSETEG00000002299 #22
Xenarthra	ANCESTRAL SPECIES	1637																ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23
Armadillo	MODERN SPECIES	2675														TPRG1 (ENSDNOG00000049260) #21	ENSDNOG00000045539	TP63 (ENSDNOG00000016582) #22	P3H2 (ENSDNOG00000035205) #23
Sloth	MODERN SPECIES	6615																TP63 (ENSCHOG00000010497) #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000158447	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000158159	ENSGT00550000075086	ENSGT00950000182923.B.a	ENSGT00950000182944.B.a	ENSGT00390000013662	ENSGT00940000161309	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000158159	ENSGT00550000075086	ENSGT00950000182923.B.a	ENSGT00950000182944.B.a	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000161309	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000158159	ENSGT00550000075086	ENSGT00950000182923.B.a	ENSGT00950000182944.B.a	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000161309	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000158159	ENSGT00550000075086	ENSGT00950000182923.B.a	ENSGT00950000182944.B.a	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000161309	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a
koala	MODERN SPECIES	33	DTYMK (ENSPCIG00000016574)	ING5 (ENSPCIG00000016570)	D2HGDH (ENSPCIG00000016567)	GAL3ST2 (ENSPCIG00000032948)	ENSPCIG00000031792	ENSPCIG00000025273	ENSPCIG00000025271	MROH2A (ENSPCIG00000025265)	RTP1 (ENSPCIG00000025264) #12	ENSPCIG00000025263 #13	SST (ENSPCIG00000025262) #16	BCL6 (ENSPCIG00000025261) #18	ENSPCIG00000025259	LPP (ENSPCIG00000037471) #20	TPRG1 (ENSPCIG00000003993) #21	TP63 (ENSPCIG00000025324) #22
Common wonbat	MODERN SPECIES	436											SST (ENSVURG00010023393) #16	BCL6 (ENSVURG00010023396) #18	ENSVURG00010023400	LPP (ENSVURG00010023403) #20	TPRG1 (ENSVURG00010023407) #21	TP63 (ENSVURG00010023411) #22	P3H2 (ENSVURG00010023424) #23	CLDN1 (ENSVURG00010023438) #24	CLDN16 (ENSVURG00010023440) #25	IL1RAP (ENSVURG00010023443) #27	GMNC (ENSVURG00010023448) #28	OSTN (ENSVURG00010023452) #29	CCDC50 (ENSVURG00010023457) #31	FGF12 (ENSVURG00010023463) #33	MB21D2 (ENSVURG00010023465) #34	ENSVURG00010023467	PLAAT1 (ENSVURG00010023470) #35	ATP13A5 (ENSVURG00010023478) #36	ATP13A4 (ENSVURG00010023496) #37	OPA1 (ENSVURG00010023512)	HES1 (ENSVURG00010023521)
Wallaby	MODERN SPECIES	8879																TP63 (ENSMEUG00000015480) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000025437	ATG4B (ENSSHAG00000025606)	ING5 (ENSSHAG00000021102)	D2HGDH (ENSSHAG00000016109)	GAL3ST2 (ENSSHAG00000015929)	ENSSHAG00000015765	ENSSHAG00000022224	ENSSHAG00000015591	ENSSHAG00000015438	ENSSHAG00000015412 #12	MASP1 (ENSSHAG00000015135) #13	SST (ENSSHAG00000028585) #16	ENSSHAG00000029604 #18	LPP (ENSSHAG00000022243) #20	TPRG1 (ENSSHAG00000011287) #21	TP63 (ENSSHAG00000007507) #22	P3H2 (ENSSHAG00000006714) #23	CLDN1 (ENSSHAG00000001180) #24	CLDN16 (ENSSHAG00000028888) #25	ENSSHAG00000022935 #26	ENSSHAG00000014108 #27	GMNC (ENSSHAG00000013322) #28	OSTN (ENSSHAG00000011436) #29	CCDC50 (ENSSHAG00000010604) #31	FGF12 (ENSSHAG00000027715) #33	ENSSHAG00000029022 ##34	ENSSHAG00000025104 #35	ATP13A5 (ENSSHAG00000006031) #36	ATP13A4 (ENSSHAG00000005036) #37	OPA1 (ENSSHAG00000002827)	HES1 (ENSSHAG00000025588)
Opossum	MODERN SPECIES	6	DHX33 (ENSMODG00000016649)	DERL2 (ENSMODG00000016643)	MIS12 (ENSMODG00000016640)	WSCD1 (ENSMODG00000016639)	AIPL1 (ENSMODG00000016628)	ENSMODG00000041867	ENSMODG00000024533	ENSMODG00000016620	MFSD1 (ENSMODG00000011438)	ENSMODG00000011388	IQCJ (ENSMODG00000042671)	SCHIP1 (ENSMODG00000011375)	IL12A (ENSMODG00000011361)	LPP (ENSMODG00000015050) #20	TPRG1 (ENSMODG00000015053) #21	TP63 (ENSMODG00000015060) #22	P3H2 (ENSMODG00000015073) #23	CLDN1 (ENSMODG00000047456) #24	CLDN16 (ENSMODG00000015088) #25	IL1RAP (ENSMODG00000015095) #27	ENSMODG00000050076 #28	OSTN (ENSMODG00000015103) #29	CCDC50 (ENSMODG00000015112) #31	FGF12 (ENSMODG00000015116) #33	ENSMODG00000015119 ##34	PLAAT1 (ENSMODG00000015123) #35	ATP13A4 (ENSMODG00000015137) #37	OPA1 (ENSMODG00000015156)	ATG4B (ENSMODG00000008658)	ENSMODG00000039725	ENSMODG00000008649
Platypus	MODERN SPECIES	18	ATG4B (ENSOANG00000008758)	DTYMK (ENSOANG00000008759)	ING5 (ENSOANG00000049910)	D2HGDH (ENSOANG00000000857)	ENSOANG00000002250	ENSOANG00000000858	ENSOANG00000000861	ENSOANG00000031433	MROH2A (ENSOANG00000000863)	RTP1 (ENSOANG00000000868) #12	MASP1 (ENSOANG00000000869) #13	SST (ENSOANG00000000871) #16	BCL6 (ENSOANG00000000872) #18	LPP (ENSOANG00000013793) #20	TPRG1 (ENSOANG00000013794) #21	TP63 (ENSOANG00000013795) #22	P3H2 (ENSOANG00000013797) #23	CLDN1 (ENSOANG00000013798) #24	CLDN16 (ENSOANG00000004452) #25	ENSOANG00000047384 #26	IL1RAP (ENSOANG00000004451) #27	GMNC (ENSOANG00000004450) #28	OSTN (ENSOANG00000004449) #29	CCDC50 (ENSOANG00000004448) #31	FGF12 (ENSOANG00000004446) #33	MB21D2 (ENSOANG00000004445) #34	ENSOANG00000004442	ATP13A5 (ENSOANG00000006499) #36	ATP13A4 (ENSOANG00000040503) #37	OPA1 (ENSOANG00000006501)	HES1 (ENSOANG00000039736)
Sauria	ANCESTRAL SPECIES	9	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000164175.a.b	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Archelosauria	ANCESTRAL SPECIES	11	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00940000164175.a.b	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Archosauria	ANCESTRAL SPECIES	10	ENSGT00940000160853	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00940000164175.a.b	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Aves	ANCESTRAL SPECIES	13	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Neognathae	ANCESTRAL SPECIES	9	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Anatidae	ANCESTRAL SPECIES	29	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Duck	MODERN SPECIES	27	FYTTD1 (ENSAPLG00000015624)	RUBCN (ENSAPLG00000028807)	ENSAPLG00000010743	ENSAPLG00000024440	TFRC (ENSAPLG00000002774)	SLC51A (ENSAPLG00000027071)	PCYT1A (ENSAPLG00000003305)	DYNLT2B (ENSAPLG00000003527)	ENSAPLG00000003601	ENSAPLG00000023211	MASP1 (ENSAPLG00000015691) #13	ENSAPLG00000025648	SST (ENSAPLG00000019657) #16	BCL6 (ENSAPLG00000015868) #18	LPP (ENSAPLG00000012796) #20	TP63 (ENSAPLG00000012917) #22	P3H2 (ENSAPLG00000013236) #23	CLDN1 (ENSAPLG00000013457) #24	CLDN16 (ENSAPLG00000013664) #25	TMEM207 (ENSAPLG00000013691) #26	IL1RAP (ENSAPLG00000016792) #27	GMNC (ENSAPLG00000014067) #28	ENSAPLG00000014096 #29	ENSAPLG00000014170 #30	CCDC50 (ENSAPLG00000014200) #31	FGF12 (ENSAPLG00000014483) #33	MB21D2 (ENSAPLG00000014603) #34	ENSAPLG00000014283	PLAAT1 (ENSAPLG00000014414) #35	ATP13A5 (ENSAPLG00000003275) #36	ATP13A4 (ENSAPLG00000003633) #37
Pink-footed goose	MODERN SPECIES	106	RUBCN (ENSABRG00000008013)	ENSABRG00000008050	ENSABRG00000008134	TNK2 (ENSABRG00000008180)	TFRC (ENSABRG00000008217)	SLC51A (ENSABRG00000008236)	PCYT1A (ENSABRG00000008308)	DYNLT2B (ENSABRG00000008319)	ENSABRG00000008331	ENSABRG00000008338	MASP1 (ENSABRG00000008358) #13	ENSABRG00000008384	SST (ENSABRG00000008394) #16	BCL6 (ENSABRG00000008399) #18	LPP (ENSABRG00000008425) #20	TP63 (ENSABRG00000008456) #22	P3H2 (ENSABRG00000008476) #23	CLDN1 (ENSABRG00000008485) #24	CLDN16 (ENSABRG00000008505) #25	TMEM207 (ENSABRG00000008551) #26	IL1RAP (ENSABRG00000008561) #27	GMNC (ENSABRG00000008577) #28	OSTN (ENSABRG00000008600) #29	ENSABRG00000008611 #30	ENSABRG00000008621	FGF12 (ENSABRG00000008667) #33	MB21D2 (ENSABRG00000008680) #34	ENSABRG00000008701
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00390000012807	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00390000012807	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Chicken	MODERN SPECIES	38	FYTTD1 (ENSGALG00010015227)	RUBCN (ENSGALG00010015213)	ENSGALG00010015199	ENSGALG00010015159	TNK2 (ENSGALG00010015146)	TFRC (ENSGALG00010015029)	SLC51A (ENSGALG00010014970)	PCYT1A (ENSGALG00010014935)	DYNLT2B (ENSGALG00010014916)	PDCD1 (ENSGALG00010014912)	ENSGALG00010017527	MASP1 (ENSGALG00010013820) #13	SST1 (ENSGALG00010013624) #16	BCL6 (ENSGALG00010013635) #18	LPP (ENSGALG00010014984) #20	TP63 (ENSGALG00010014867) #22	P3H2 (ENSGALG00010017579) #23	CLDN1 (ENSGALG00010013646) #24	CLDN16 (ENSGALG00010014643) #25	TMEM207 (ENSGALG00010014596) #26	IL1RAP (ENSGALG00010014572) #27	GMNC (ENSGALG00010014326) #28	OSTN (ENSGALG00010014291) #29	UTS2B (ENSGALG00010014320) #30	CCDC50 (ENSGALG00010014209) #31	FGF12 (ENSGALG00010014166) #33	MB21D2 (ENSGALG00010017587) #34	ENSGALG00010017736	ENSGALG00010017731	ENSGALG00010017719	ENSGALG00010017812
Turkey	MODERN SPECIES	2	LRCH3 (ENSMGAG00000007957)	FYTTD1 (ENSMGAG00000007933)	RUBCN (ENSMGAG00000007901)	ENSMGAG00000007888	ENSMGAG00000007856	ENSMGAG00000007997	ENSMGAG00000007803	ENSMGAG00000007697	PCYT1A (ENSMGAG00000007676)	ENSMGAG00000007656	ENSMGAG00000007654	MASP1 (ENSMGAG00000007637) #13	SST (ENSMGAG00000007596) #16	BCL6 (ENSMGAG00000007602) #18	ENSMGAG00000007571 #20	TP63 (ENSMGAG00000007535) #22	P3H2 (ENSMGAG00000007491) #23	CLDN1 (ENSMGAG00000007457) #24	CLDN16 (ENSMGAG00000007449) #25	IL1RAP (ENSMGAG00000007413) #27	GMNC (ENSMGAG00000019457) #28	ENSMGAG00000007378 #30	CCDC50 (ENSMGAG00000007352) #31	FGF12 (ENSMGAG00000007348) #33	MB21D2 (ENSMGAG00000017110) #34	ENSMGAG00000018650	ENSMGAG00000007278	ENSMGAG00000001021	ENSMGAG00000001052	ENSMGAG00000001040	ENSMGAG00000018378
Japanese quail	MODERN SPECIES	27	FYTTD1 (ENSCJPG00005013617)	RUBCN (ENSCJPG00005013615)	ENSCJPG00005013614	ENSCJPG00005013611	ENSCJPG00005013610	TFRC (ENSCJPG00005013608)	SLC51A (ENSCJPG00005013607)	PCYT1A (ENSCJPG00005013606)	DYNLT2B (ENSCJPG00005013605)	ENSCJPG00005013604	ENSCJPG00005013603	MASP1 (ENSCJPG00005013601) #13	SST (ENSCJPG00005013600) #16	BCL6 (ENSCJPG00005013599) #18	LPP (ENSCJPG00005013592) #20	TP63 (ENSCJPG00005013585) #22	P3H2 (ENSCJPG00005013583) #23	CLDN1 (ENSCJPG00005013579) #24	CLDN16 (ENSCJPG00005013577) #25	TMEM207 (ENSCJPG00005013575) #26	IL1RAP (ENSCJPG00005013571) #27	GMNC (ENSCJPG00005013567) #28	OSTN (ENSCJPG00005013565) #29	UTS2B (ENSCJPG00005013563) #30	CCDC50 (ENSCJPG00005013561) #31	FGF12 (ENSCJPG00005013559) #33	MB21D2 (ENSCJPG00005013558) #34	ENSCJPG00005013555	ENSCJPG00005013554	PLAAT1 (ENSCJPG00005013552) #35	ATP13A5 (ENSCJPG00005013511) #36
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.b	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35
Passeriformes	ANCESTRAL SPECIES	9	ENSGT00390000012807	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.b	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35
Great tit	MODERN SPECIES	29	FYTTD1 (ENSPMJG00000019611)	RUBCN (ENSPMJG00000019607)	ENSPMJG00000019606	ENSPMJG00000019604	ENSPMJG00000019603	TFRC (ENSPMJG00000019601)	SLC51A (ENSPMJG00000019599)	PCYT1A (ENSPMJG00000019598)	DYNLT2B (ENSPMJG00000019597)	ENSPMJG00000019596	ENSPMJG00000019590	MASP1 (ENSPMJG00000019589) #13	SST (ENSPMJG00000019586) #16	BCL6 (ENSPMJG00000019584) #18	LPP (ENSPMJG00000019572) #20	TP63 (ENSPMJG00000019566) #22	P3H2 (ENSPMJG00000019564) #23	CLDN1 (ENSPMJG00000019563) #24	CLDN16 (ENSPMJG00000019562) #25	TMEM207 (ENSPMJG00000019560) #26	IL1RAP (ENSPMJG00000019557) #27	GMNC (ENSPMJG00000019556) #28	OSTN (ENSPMJG00000019555) #29	UTS2B (ENSPMJG00000019554) #30	CCDC50 (ENSPMJG00000019553) #31	FGF12 (ENSPMJG00000019552) #33	MB21D2 (ENSPMJG00000019551) #34	ENSPMJG00000019550	ENSPMJG00000019549	ENSPMJG00000019547	ATP13A4 (ENSPMJG00000019546) #37
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT00390000012807	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.b	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634.h #35
Flycatcher	MODERN SPECIES	28	FYTTD1 (ENSFALG00000007503)	RUBCN (ENSFALG00000007498)	ENSFALG00000007495	ENSFALG00000007481	ENSFALG00000007476	TFRC (ENSFALG00000007464)	SLC51A (ENSFALG00000007454)	PCYT1A (ENSFALG00000007448)	ENSFALG00000007441	ENSFALG00000007437	ENSFALG00000022960 #13	ENSFALG00000007423 #13	SST (ENSFALG00000007412) #16	BCL6 (ENSFALG00000007407) #18	LPP (ENSFALG00000007400) #20	TP63 (ENSFALG00000007393) #22	P3H2 (ENSFALG00000007377) #23	CLDN1 (ENSFALG00000024040) #24	CLDN16 (ENSFALG00000007345) #25	TMEM207 (ENSFALG00000025097) #26	IL1RAP (ENSFALG00000007337) #27	GMNC (ENSFALG00000023445) #28	OSTN (ENSFALG00000007324) #29	UTS2B (ENSFALG00000007319) #30	CCDC50 (ENSFALG00000007316) #31	FGF12 (ENSFALG00000007307) #33	MB21D2 (ENSFALG00000028206) #34	ENSFALG00000027996	ENSFALG00000007292	ENSFALG00000007286	ENSFALG00000007274 #35
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT00390000012807	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.b	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634.h.a #35	ENSGT00940000156634.h.b #35
Medium ground finch	MODERN SPECIES	12	IQCG (ENSGFOG00000012782)	LRCH3 (ENSGFOG00000012767)	FYTTD1 (ENSGFOG00000012750)	RUBCN (ENSGFOG00000012735)	ENSGFOG00000012711	TFRC (ENSGFOG00000012705)	SLC51A (ENSGFOG00000012701)	PCYT1A (ENSGFOG00000012698)	DYNLT2B (ENSGFOG00000012691)	ENSGFOG00000012689	ENSGFOG00000012685	MASP1 (ENSGFOG00000012678) #13	SST (ENSGFOG00000012674) #16	BCL6 (ENSGFOG00000012671) #18	LPP (ENSGFOG00000012660) #20	TP63 (ENSGFOG00000012652) #22	P3H2 (ENSGFOG00000012640) #23	CLDN1 (ENSGFOG00000012636) #24	CLDN16 (ENSGFOG00000012633) #25	IL1RAP (ENSGFOG00000012627) #27	GMNC (ENSGFOG00000012625) #28	OSTN (ENSGFOG00000012622) #29	UTS2B (ENSGFOG00000012620) #30	CCDC50 (ENSGFOG00000012618) #31	FGF12 (ENSGFOG00000012595) #33	MB21D2 (ENSGFOG00000012592) #34	ENSGFOG00000012589	ENSGFOG00000012584 #35	ENSGFOG00000012580 #35	ENSGFOG00000012577 #35	ENSGFOG00000012572 #35
Passeroidea	ANCESTRAL SPECIES	13	ENSGT00390000012807	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.a.b	ENSGT00940000156850.a.b.a.a	ENSGT00940000156850.a.b.b	ENSGT00940000156634.h.a #35	ENSGT00940000156634.h.b #35
Zebra finch	MODERN SPECIES	31	LRCH3 (ENSTGUG00000009649)	FYTTD1 (ENSTGUG00000009645)	RUBCN (ENSTGUG00000009610)	ENSTGUG00000009601	ENSTGUG00000009581	ENSTGUG00000009557	TFRC (ENSTGUG00000009510)	SLC51A (ENSTGUG00000009499)	PCYT1A (ENSTGUG00000009486)	ENSTGUG00000021367	ENSTGUG00000009473	MASP1 (ENSTGUG00000009433) #13	SST (ENSTGUG00000027783) #16	BCL6 (ENSTGUG00000009413) #18	LPP (ENSTGUG00000009408) #20	TP63 (ENSTGUG00000009377) #22	P3H2 (ENSTGUG00000009345) #23	CLDN1 (ENSTGUG00000028279) #24	CLDN16 (ENSTGUG00000009324) #25	IL1RAP (ENSTGUG00000009300) #27	GMNC (ENSTGUG00000022630) #28	OSTN (ENSTGUG00000009282) #29	UTS2B (ENSTGUG00000009278) #30	ENSTGUG00000026038	ENSTGUG00000022602	FGF12 (ENSTGUG00000009253) #33	MB21D2 (ENSTGUG00000009252) #34	ENSTGUG00000024497	ENSTGUG00000009243	ENSTGUG00000009222	PLAAT1 (ENSTGUG00000009218) #35
Common canary	MODERN SPECIES	10	FYTTD1 (ENSSCAG00000014741)	RUBCN (ENSSCAG00000014768)	ENSSCAG00000014803	ENSSCAG00000014811	ENSSCAG00000014838	TFRC (ENSSCAG00000014855)	SLC51A (ENSSCAG00000014862)	PCYT1A (ENSSCAG00000014869)	DYNLT2B (ENSSCAG00000014873)	ENSSCAG00000014875	ENSSCAG00000014878	MASP1 (ENSSCAG00000014883) #13	SST (ENSSCAG00000014894) #16	BCL6 (ENSSCAG00000014898) #18	LPP (ENSSCAG00000014917) #20	TP63 (ENSSCAG00000014949) #22	P3H2 (ENSSCAG00000014959) #23	ENSSCAG00000014997	CLDN1 (ENSSCAG00000014998) #24	CLDN16 (ENSSCAG00000015003) #25	IL1RAP (ENSSCAG00000015011) #27	GMNC (ENSSCAG00000015015) #28	OSTN (ENSSCAG00000015019) #29	UTS2B (ENSSCAG00000015023) #30	CCDC50 (ENSSCAG00000015034) #31	FGF12 (ENSSCAG00000015044) #33	MB21D2 (ENSSCAG00000015053) #34	ENSSCAG00000015068	ENSSCAG00000015078 #35	ENSSCAG00000015086 #35	ATP13A4 (ENSSCAG00000015091) #37
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00940000160658	ENSGT00390000010302	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT01090000263360	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Golden eagle	MODERN SPECIES	1	ENSACCG00020004402	ENSACCG00020004430	ENSACCG00020004442	ENSACCG00020004489	TFRC (ENSACCG00020004521)	SLC51A (ENSACCG00020004535)	PCYT1A (ENSACCG00020004544)	DYNLT2B (ENSACCG00020004550)	ENSACCG00020004556	ENSACCG00020004564	MASP1 (ENSACCG00020004571) #13	ENSACCG00020000387	SST (ENSACCG00020000401) #16	BCL6 (ENSACCG00020000423) #18	LPP (ENSACCG00020000459) #20	TP63 (ENSACCG00020000594) #22	P3H2 (ENSACCG00020000774) #23	ENSACCG00020000829	CLDN1 (ENSACCG00020000847) #24	CLDN16 (ENSACCG00020000869) #25	IL1RAP (ENSACCG00020000934) #27	GMNC (ENSACCG00020000980) #28	OSTN (ENSACCG00020000996) #29	UTS2B (ENSACCG00020001004) #30	CCDC50 (ENSACCG00020001058) #31	FGF12 (ENSACCG00020001117) #33	MB21D2 (ENSACCG00020001139) #34	ENSACCG00020001220	PLAAT1 (ENSACCG00020001351) #35	ATP13A5 (ENSACCG00020001406) #36	ATP13A4 (ENSACCG00020001662) #37
Kakapo	MODERN SPECIES	25	ENSSHBG00005011308	ENSSHBG00005011388	ENSSHBG00005011466	ENSSHBG00005011493	ENSSHBG00005011515	ENSSHBG00005011565	TFRC (ENSSHBG00005011701)	SLC51A (ENSSHBG00005011993)	PCYT1A (ENSSHBG00005012004)	DYNLT2B (ENSSHBG00005012024)	ENSSHBG00005012087	ENSSHBG00005012399	MASP1 (ENSSHBG00005012416) #13	BCL6 (ENSSHBG00005012463) #18	LPP (ENSSHBG00005012495) #20	TP63 (ENSSHBG00005012515) #22	P3H2 (ENSSHBG00005012583) #23	CLDN1 (ENSSHBG00005013311) #24	CLDN16 (ENSSHBG00005013318) #25	IL1RAP (ENSSHBG00005013330) #27	GMNC (ENSSHBG00005013346) #28	OSTN (ENSSHBG00005013354) #29	UTS2B (ENSSHBG00005013362) #30	CCDC50 (ENSSHBG00005013372) #31	FGF12 (ENSSHBG00005013393) #33	MB21D2 (ENSSHBG00005013403) #34	ODR4 (ENSSHBG00005013411)	TPR (ENSSHBG00005013537)	PRG4 (ENSSHBG00005013780)	HMCN1 (ENSSHBG00005014617)	IVNS1ABP (ENSSHBG00005014836)
African ostrich	MODERN SPECIES	861	ENSSCUG00000013812	ENSSCUG00000013808	ENSSCUG00000013802	TFRC (ENSSCUG00000013794)	SLC51A (ENSSCUG00000013791)	ENSSCUG00000013788	PCYT1A (ENSSCUG00000013785)	DYNLT2B (ENSSCUG00000013780)	ENSSCUG00000013779	ENSSCUG00000013776	MASP1 (ENSSCUG00000013773) #13	ENSSCUG00000013771	SST (ENSSCUG00000013770) #16	BCL6 (ENSSCUG00000013769) #18	LPP (ENSSCUG00000013768) #20	TP63 (ENSSCUG00000013762) #22	P3H2 (ENSSCUG00000013755) #23	CLDN1 (ENSSCUG00000013746) #24	CLDN16 (ENSSCUG00000013740) #25	IL1RAP (ENSSCUG00000013736) #27	GMNC (ENSSCUG00000013731) #28	OSTN (ENSSCUG00000013730) #29	UTS2B (ENSSCUG00000013728) #30	CCDC50 (ENSSCUG00000013724) #31	FGF12 (ENSSCUG00000013723) #33	MB21D2 (ENSSCUG00000013722) #34	ENSSCUG00000013716	PLAAT1 (ENSSCUG00000013713) #35	ATP13A5 (ENSSCUG00000013706) #36	ATP13A4 (ENSSCUG00000013702) #37	OPA1 (ENSSCUG00000013399)
Australian saltwater crocodile	MODERN SPECIES	30	TNK2 (ENSCPRG00005012339)	ENSCPRG00005012470	ZDHHC19 (ENSCPRG00005012473)	SLC51A (ENSCPRG00005012482)	PCYT1A (ENSCPRG00005012487)	ENSCPRG00005012496	RTP4 (ENSCPRG00005012504) #15	ENSCPRG00005012506	MASP1 (ENSCPRG00005012512) #13	ENSCPRG00005012516	SST (ENSCPRG00005012520) #16	BCL6 (ENSCPRG00005012522) #18	LPP (ENSCPRG00005012553) #20	TPRG1 (ENSCPRG00005012559) #21	ENSCPRG00005012568	TP63 (ENSCPRG00005012584) #22	P3H2 (ENSCPRG00005012602) #23	CLDN1 (ENSCPRG00005012613) #24	CLDN16 (ENSCPRG00005012619) #25	ENSCPRG00005012633	IL1RAP (ENSCPRG00005012640) #27	GMNC (ENSCPRG00005012690) #28	OSTN (ENSCPRG00005012693) #29	UTS2B (ENSCPRG00005012694) #30	CCDC50 (ENSCPRG00005012697) #31	FGF12 (ENSCPRG00005012723) #33	MB21D2 (ENSCPRG00005012743) #34	ENSCPRG00005012748	PLAAT1 (ENSCPRG00005012766) #35	ENSCPRG00005012777 #36	ATP13A4 (ENSCPRG00005012822) #37
Cryptodira	ANCESTRAL SPECIES	16	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00940000164175.a.b	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a.a	ENSGT00940000164175.a.b	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37
Emydidae	ANCESTRAL SPECIES	3	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a.a	ENSGT00940000164175.a.b	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156850.a.b	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851
Three-toed box turtle	MODERN SPECIES	32	ENSTMTG00000001820	ENSTMTG00000001839	TFRC (ENSTMTG00000001864)	ZDHHC19 (ENSTMTG00000001879)	SLC51A (ENSTMTG00000001893)	PCYT1A (ENSTMTG00000001903)	ENSTMTG00000001918	ENSTMTG00000001932	ENSTMTG00000001935	MASP1 (ENSTMTG00000001948) #13	ENSTMTG00000001957	SST (ENSTMTG00000001963) #16	BCL6 (ENSTMTG00000001970) #18	LPP (ENSTMTG00000001981) #20	TPRG1 (ENSTMTG00000001987) #21	TP63 (ENSTMTG00000001991) #22	P3H2 (ENSTMTG00000002004) #23	CLDN1 (ENSTMTG00000002012) #24	CLDN16 (ENSTMTG00000002027) #25	IL1RAP (ENSTMTG00000002039) #27	GMNC (ENSTMTG00000002047) #28	OSTN (ENSTMTG00000002053) #29	UTS2B (ENSTMTG00000002060) #30	CCDC50 (ENSTMTG00000002070) #31	ENSTMTG00000002085	FGF12 (ENSTMTG00000002097) #33	MB21D2 (ENSTMTG00000002111) #34	ENSTMTG00000002114	PLAAT1 (ENSTMTG00000002126) #35	ATP13A5 (ENSTMTG00000002175) #36	ENSTMTG00000002258
painted turtle	MODERN SPECIES	853												ENSCPBG00000012747	SST (ENSCPBG00000012750) #16	BCL6 (ENSCPBG00000012754) #18	LPP (ENSCPBG00000012763) #20	TP63 (ENSCPBG00000012781) #22	P3H2 (ENSCPBG00000012789) #23	CLDN1 (ENSCPBG00000012792) #24	CLDN16 (ENSCPBG00000012793) #25	ENSCPBG00000012796	IL1RAP (ENSCPBG00000012798) #27	GMNC (ENSCPBG00000012805) #28	OSTN (ENSCPBG00000012809) #29	CCDC50 (ENSCPBG00000012811) #31	ENSCPBG00000012815
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00940000161784	ENSGT00950000185941	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000164175.a.a.a	ENSGT00940000164175.a.b	ENSGT00940000161858 #12	ENSGT00950000183084.b.b #13	ENSGT00390000014757.h	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000006126 #26	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000168062.d	ENSGT00940000168062.c	ENSGT00940000156634 #35	ENSGT00940000160327 #36
Goode s thornscrub tortoise	MODERN SPECIES	23	ZDHHC19 (ENSGEVG00005017115)	ENSGEVG00005017088	SLC51A (ENSGEVG00005017054)	PCYT1A (ENSGEVG00005017034)	DYNLT2B (ENSGEVG00005017013)	ENSGEVG00005016979	ENSGEVG00005016951	ENSGEVG00005016904	ENSGEVG00005016834	MASP1 (ENSGEVG00005016757) #13	ENSGEVG00005016739	SST (ENSGEVG00005016712) #16	BCL6 (ENSGEVG00005016685) #18	LPP (ENSGEVG00005016665) #20	TPRG1 (ENSGEVG00005016643) #21	TP63 (ENSGEVG00005016584) #22	P3H2 (ENSGEVG00005016508) #23	CLDN1 (ENSGEVG00005016467) #24	CLDN16 (ENSGEVG00005016412) #25	TMEM207 (ENSGEVG00005016376) #26	IL1RAP (ENSGEVG00005016340) #27	GMNC (ENSGEVG00005016277) #28	OSTN (ENSGEVG00005016240) #29	UTS2B (ENSGEVG00005016192) #30	CCDC50 (ENSGEVG00005016143) #31	FGF12 (ENSGEVG00005016056) #33	MB21D2 (ENSGEVG00005016026) #34	ENSGEVG00005015991	ENSGEVG00005015951	PLAAT1 (ENSGEVG00005015933) #35	ATP13A5 (ENSGEVG00005015537) #36
Abingdon island giant tortoise	MODERN SPECIES	534	ZDHHC19 (ENSCABG00000004932)	ENSCABG00000004934	SLC51A (ENSCABG00000004937)	PCYT1A (ENSCABG00000004940)	DYNLT2B (ENSCABG00000004942)	ENSCABG00000004945	ENSCABG00000004947	ENSCABG00000004949	RTP1 (ENSCABG00000004950) #12	MASP1 (ENSCABG00000004952) #13	ENSCABG00000004954	SST (ENSCABG00000004956) #16	BCL6 (ENSCABG00000004960) #18	LPP (ENSCABG00000004965) #20	TPRG1 (ENSCABG00000004967) #21	TP63 (ENSCABG00000004971) #22	P3H2 (ENSCABG00000005183) #23	CLDN1 (ENSCABG00000005542) #24	CLDN16 (ENSCABG00000005543) #25	TMEM207 (ENSCABG00000005544) #26	IL1RAP (ENSCABG00000005545) #27	GMNC (ENSCABG00000005546) #28	OSTN (ENSCABG00000005547) #29	CCDC50 (ENSCABG00000005548) #31	FGF12 (ENSCABG00000005552) #33	MB21D2 (ENSCABG00000005557) #34	ENSCABG00000005558	ENSCABG00000005560	ENSCABG00000005561	PLAAT1 (ENSCABG00000005563) #35	ATP13A5 (ENSCABG00000005576) #36
Chinese turtle	MODERN SPECIES	1022																TP63 (ENSPSIG00000016009) #22	P3H2 (ENSPSIG00000015242) #23
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000164175.a.b	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00390000014757.h	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.a #34	ENSGT00940000156634 #35	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000163072
tuatara	MODERN SPECIES	1248	RUBCN (ENSSPUG00000012486)	ENSSPUG00000012463	ENSSPUG00000012444	ENSSPUG00000012429	ENSSPUG00000012421	ENSSPUG00000011734	ENSSPUG00000011245	SLC51A (ENSSPUG00000011183)	PCYT1A (ENSSPUG00000011155)	DYNLT2B (ENSSPUG00000011138)	MASP1 (ENSSPUG00000011118) #13	SST (ENSSPUG00000011104) #16	BCL6 (ENSSPUG00000011070) #18	LPP (ENSSPUG00000011048) #20	TPRG1 (ENSSPUG00000011036) #21	TP63 (ENSSPUG00000010988) #22	P3H2 (ENSSPUG00000010809) #23	CLDN1 (ENSSPUG00000010759) #24	CLDN16 (ENSSPUG00000010738) #25	IL1RAP (ENSSPUG00000010720) #27	OSTN (ENSSPUG00000010683) #29	CCDC50 (ENSSPUG00000010663) #31	FGF12 (ENSSPUG00000010637) #33	MB21D2 (ENSSPUG00000010624) #34
Episquamata	ANCESTRAL SPECIES	22	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000164175.a.b	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00390000014757.h	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.b.a ##34	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000163072	ENSGT00940000161771
Laterata	ANCESTRAL SPECIES	40	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT00390000013662	ENSGT00940000162454	ENSGT00940000164175.a.b	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00390000014757.h	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.b.a ##34	ENSGT00940000160327 #36	ENSGT00940000159448 #37	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000163072	ENSGT00940000161771
Common wall lizard	MODERN SPECIES	13	ZDHHC19 (ENSPMRG00000023289)	SLC51A (ENSPMRG00000023285)	PCYT1A (ENSPMRG00000023280)	DYNLT2B (ENSPMRG00000023270)	ENSPMRG00000023265	ENSPMRG00000023258	ENSPMRG00000023251	MASP1 (ENSPMRG00000023235) #13	ENSPMRG00000023229 #16	ENSPMRG00000023225	ENSPMRG00000023218	BCL6 (ENSPMRG00000023209) #18	ENSPMRG00000023198 #20	ENSPMRG00000023190 #20	ENSPMRG00000023185 #21	TP63 (ENSPMRG00000023171) #22	P3H2 (ENSPMRG00000023157) #23	CLDN1 (ENSPMRG00000023150) #24	CLDN16 (ENSPMRG00000023142) #25	ENSPMRG00000023136	IL1RAP (ENSPMRG00000023118) #27	GMNC (ENSPMRG00000023107) #28	OSTN (ENSPMRG00000023103) #29	CCDC50 (ENSPMRG00000023080) #31	FGF12 (ENSPMRG00000023069) #33	ENSPMRG00000023065 ##34	ATP13A5 (ENSPMRG00000023045) #36	ATP13A4 (ENSPMRG00000023024) #37	OPA1 (ENSPMRG00000020970)	ENSPMRG00000020480	PTMA (ENSPMRG00000020469)
Argentine black and white tegu	MODERN SPECIES	76	ENSSMRG00000016472	ENSSMRG00000016407	ZDHHC19 (ENSSMRG00000016405)	SLC51A (ENSSMRG00000016404)	PCYT1A (ENSSMRG00000016402)	DYNLT2B (ENSSMRG00000016401)	ENSSMRG00000016398	MASP1 (ENSSMRG00000016397) #13	SST (ENSSMRG00000016396) #16	ENSSMRG00000016395	BCL6 (ENSSMRG00000016394) #18	ENSSMRG00000016393	LPP (ENSSMRG00000016392) #20	TPRG1 (ENSSMRG00000016391) #21	ENSSMRG00000016389	TP63 (ENSSMRG00000016388) #22	P3H2 (ENSSMRG00000016376) #23	CLDN1 (ENSSMRG00000016375) #24	CLDN16 (ENSSMRG00000016330) #25	IL1RAP (ENSSMRG00000016326) #27	ENSSMRG00000016324	GMNC (ENSSMRG00000016322) #28	OSTN (ENSSMRG00000016318) #29	CCDC50 (ENSSMRG00000016316) #31	FGF12 (ENSSMRG00000016313) #33	ENSSMRG00000016311 ##34	ENSSMRG00000016310	ATP13A5 (ENSSMRG00000016239) #36	ATP13A4 (ENSSMRG00000016228) #37	OPA1 (ENSSMRG00000016227)	HES1 (ENSSMRG00000016226)
Toxicofera	ANCESTRAL SPECIES	92																ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.b.b.a ##34
Lizard	MODERN SPECIES	999																ENSACAG00000043083 #22	P3H2 (ENSACAG00000000462) #23	CLDN1 (ENSACAG00000037457) #24	ENSACAG00000044822	CLDN16 (ENSACAG00000000733) #25	IL1RAP (ENSACAG00000000773) #27	GMNC (ENSACAG00000038171) #28	CCDC50 (ENSACAG00000015518) #31
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Mainland tiger snake	MODERN SPECIES	605																ENSNSUG00000002578 #22
Eastern brown snake	MODERN SPECIES	282																TP63 (ENSPTXG00000016699) #22
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	9924																TP63 (ENSLLTG00000013601) #22
Blue-lipped sea krait	MODERN SPECIES	5923																ENSLLTG00000009218 #22
Anura	ANCESTRAL SPECIES	26	ENSGT00730000110943.C	ENSGT00940000165248	ENSGT01030000234598.a.a.a	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019	ENSGT01070000257277	ENSGT00940000164175.a.a.d	ENSGT00940000164175.a.b	ENSGT00940000164175.b	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00390000001750 #29	ENSGT00390000003511 #30	ENSGT00390000011058.b #31	ENSGT00940000155929 #33	ENSGT01050000244976.a ##34	ENSGT00940000159448.c.b.a.a.a #37	ENSGT00940000156634 #35	ENSGT00940000159448.d #37	ENSGT00550000074851	ENSGT00940000159619.a
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000011215	ENSLLEG00000011190	ENSLLEG00000011163	ENSLLEG00000011124	MASP1 (ENSLLEG00000011052) #13	ENSLLEG00000011026	ENSLLEG00000011006	SST (ENSLLEG00000010971) #16	ENSLLEG00000010934	BCL6 (ENSLLEG00000010852) #18	ENSLLEG00000010833	ENSLLEG00000010814	LPP (ENSLLEG00000010667) #20	ENSLLEG00000010642	TPRG1 (ENSLLEG00000010565) #21	TP63 (ENSLLEG00000009847) #22	ENSLLEG00000009785	P3H2 (ENSLLEG00000009411) #23	CLDN1 (ENSLLEG00000009244) #24	CLDN16 (ENSLLEG00000009196) #25	IL1RAP (ENSLLEG00000009004) #27	ENSLLEG00000008972	ENSLLEG00000008946	ENSLLEG00000008913	GMNC (ENSLLEG00000008845) #28	OSTN (ENSLLEG00000025240) #29	UTS2B (ENSLLEG00000025199) #30	CCDC50 (ENSLLEG00000025087) #31	ENSLLEG00000025053	FGF12 (ENSLLEG00000024908) #33	ENSLLEG00000024884
Frog	MODERN SPECIES	5	ENSXETG00000040899	ENSXETG00000043886	rtp3a.3 (ENSXETG00000035970)	rtp3b (ENSXETG00000019753)	rtp3 (ENSXETG00000030759)	rtp3d (ENSXETG00000035697)	masp1 (ENSXETG00000019757) #13	ENSXETG00000047313	ENSXETG00000047712	sst.1 (ENSXETG00000035728) #16	ENSXETG00000045602	bcl6 (ENSXETG00000019779) #18	lpp (ENSXETG00000012850) #20	tprg1 (ENSXETG00000012849) #21	ENSXETG00000042827	tp63 (ENSXETG00000026303) #22	ENSXETG00000049458	p3h2 (ENSXETG00000012845) #23	ENSXETG00000045057	cldn1 (ENSXETG00000015050) #24	cldn16 (ENSXETG00000015045) #25	ENSXETG00000048173	ENSXETG00000044157	il1rap (ENSXETG00000015044) #27	gmnc (ENSXETG00000036029) #28	ostn (ENSXETG00000015042) #29	uts2b (ENSXETG00000034240) #30	ccdc50 (ENSXETG00000002145) #31	ENSXETG00000046430	fgf12 (ENSXETG00000002144) #33	mb21d2 (ENSXETG00000036961) ##34
Coelacanth	MODERN SPECIES	348											SST (ENSLACG00000003574) #16	BCL6 (ENSLACG00000004278) #18	ENSLACG00000007327	LPP (ENSLACG00000010877) #20	TPRG1 (ENSLACG00000012858) #21	TP63 (ENSLACG00000014214) #22	P3H2 (ENSLACG00000014642) #23	CLDN1 (ENSLACG00000015476) #24	ENSLACG00000015580	ENSLACG00000015840	ENSLACG00000016008	CLDN16 (ENSLACG00000016096) #25	IL1RAP (ENSLACG00000016241) #27	GMNC (ENSLACG00000016600) #28	ENSLACG00000016731	ENSLACG00000016772	OSTN (ENSLACG00000016886) #29	CCDC50 (ENSLACG00000016970) #31	FGF12 (ENSLACG00000017275) #33	ENSLACG00000017691 ##34
Actinopterygii	ANCESTRAL SPECIES	105				ENSGT01050000244976.a ##34	ENSGT00940000155929 #33	ENSGT01090000260076.a #27	ENSGT00940000153270.b.b #28	ENSGT00940000164221.a.b	ENSGT00940000164221.a.a	ENSGT00390000001750 #29	ENSGT00950000183084.b.b #13	ENSGT00510000047914.b #16	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000161826.A	ENSGT00940000163072	ENSGT00940000164427.a.b	ENSGT00940000162953	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960	ENSGT00940000161593	ENSGT00940000158154
Reedfish	MODERN SPECIES	10	IL1RAP (ENSECRG00000005884) #27	GMNC (ENSECRG00000005905) #28	ENSECRG00000005921	ENSECRG00000005948	ostn (ENSECRG00000005988) #29	MASP1 (ENSECRG00000005992) #13	ENSECRG00000005995	ENSECRG00000005997	sst1.1 (ENSECRG00000006002) #16	ENSECRG00000006005	bcl6aa (ENSECRG00000006012) #18	ENSECRG00000006019	ENSECRG00000006028	ENSECRG00000006034 #20	tprg1 (ENSECRG00000006040) #21	tp63 (ENSECRG00000006056) #22	P3H2 (ENSECRG00000006078) #23	CLDN1 (ENSECRG00000006090) #24	CLDN16 (ENSECRG00000006098) #25	ENSECRG00000006106	ENSECRG00000006117	opa1 (ENSECRG00000006161)	her6 (ENSECRG00000006224)	ENSECRG00000006232	ENSECRG00000006239	ENSECRG00000006243	ENSECRG00000006246	ENSECRG00000006262	ATP13A3 (ENSECRG00000006347)	tmem44 (ENSECRG00000006401)	lsg1 (ENSECRG00000006409)
Neopterygii	ANCESTRAL SPECIES	120												ENSGT00390000016597	ENSGT00940000156311 #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #24	ENSGT00730000111162 #25	ENSGT00390000011058.b #31	ENSGT00990000204968	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000161826.A	ENSGT00940000163072	ENSGT00940000164427.a.b	ENSGT00940000162953	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960
Spotted gar	MODERN SPECIES	652	SNED1 (ENSLOCG00000005458)	ryk (ENSLOCG00000005432)	SLCO2A1 (ENSLOCG00000005400)	aire (ENSLOCG00000005382)	im:7152348 (ENSLOCG00000005370)	INPP5D (ENSLOCG00000005346)	GPR17 (ENSLOCG00000017397)	ENSLOCG00000005313	sap130a (ENSLOCG00000005291)	amotl2b (ENSLOCG00000005262)	ENSLOCG00000005244	smx5 (ENSLOCG00000005228)	bcl6aa (ENSLOCG00000005212) #18	lpp (ENSLOCG00000005199) #20	tprg1 (ENSLOCG00000005183) #21	tp63 (ENSLOCG00000005148) #22	P3H2 (ENSLOCG00000005129) #23	CLDN1 (ENSLOCG00000005111) #24	CLDN16 (ENSLOCG00000005092) #25	ENSLOCG00000005056 #31	uts2d (ENSLOCG00000005045)	opa1 (ENSLOCG00000005004)	her6 (ENSLOCG00000004988)	ENSLOCG00000017396	CPN2 (ENSLOCG00000017395)	ENSLOCG00000004970	GP5 (ENSLOCG00000017394)	ATP13A3 (ENSLOCG00000004949)	tmem44 (ENSLOCG00000004934)	lsg1 (ENSLOCG00000004918)	fam43a (ENSLOCG00000017393)
Osteoglossocephalai	ANCESTRAL SPECIES	75	ENSGT00940000156577.b	ENSGT00440000037733.e	ENSGT00940000157247.a.b	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT00940000157247.b	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387.d #24	ENSGT00940000155387.c #24	ENSGT00390000011058.b #31	ENSGT00940000166731	ENSGT00940000164427.a.b	ENSGT00940000161095	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000159619.a	ENSGT00550000074851	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	458										ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a.c	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a.c #22
Asian bonytongue	MODERN SPECIES	23	ENSSFOG00015005929	pglyrp6 (ENSSFOG00015005957)	trappc5 (ENSSFOG00015005963)	MCOLN1 (ENSSFOG00015005971)	ENSSFOG00015006010	PKN1 (ENSSFOG00015006022)	EVI5L (ENSSFOG00015006199)	ENSSFOG00015030650	ENSSFOG00015033286	ENSSFOG00015006354	GPR17 (ENSSFOG00015006609)	INPP5D (ENSSFOG00015006629)	smx5 (ENSSFOG00015029476)	bcl6aa (ENSSFOG00015006752) #18	tprg1 (ENSSFOG00015006763) #21	tp63 (ENSSFOG00015006778) #22	P3H2 (ENSSFOG00015006816) #23	EPHB3 (ENSSFOG00015006847)	ENSSFOG00015029741	ENSSFOG00015006899	PIK3CA (ENSSFOG00015006930)	ZMAT3 (ENSSFOG00015006984)	ENSSFOG00015007035	gngt2a (ENSSFOG00015028680)	NAALADL2 (ENSSFOG00015007188)	NLGN1 (ENSSFOG00015025005)	NLGN1 (ENSSFOG00015007276)	ENSSFOG00015026188	ECT2 (ENSSFOG00015007297)	b3gnt5a (ENSSFOG00015007473)	ENSSFOG00015007390
P. kingsleyae	MODERN SPECIES	690																tp63 (ENSPKIG00000014022) #22
Osteoglossiformes	ANCESTRAL SPECIES	361								ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000179497	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.b.f	ENSGT00940000156311.b.b #18	ENSGT00940000156022.b #20	ENSGT00950000183153.c.b.a.a.d #22	ENSGT00940000159593 #23	ENSGT00940000155387.c #24	ENSGT00390000011058.b.l #31	ENSGT00990000204968
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015029415	SEMA6B (ENSSFOG00015026715)	ENSSFOG00015012327	ABHD17A (ENSSFOG00015012360)	zgc:153115 (ENSSFOG00015032210)	ENSSFOG00015012396	tsen15 (ENSSFOG00015033151)	ENSSFOG00015012457	sec22ba (ENSSFOG00015027156)	imp3 (ENSSFOG00015012483)	ENSSFOG00015012517	ENSSFOG00015012545	cmpk (ENSSFOG00015012568)	bcl6ab (ENSSFOG00015012599) #18	lpp (ENSSFOG00015012629) #20	TP63 (ENSSFOG00015012668) #22	ENSSFOG00015012697 #24	ENSSFOG00015012706 #31	ENSSFOG00015024765	zgc:153913 (ENSSFOG00015012744)	ENSSFOG00015026002	OPA1 (ENSSFOG00015012833)	ENSSFOG00015028539	ENSSFOG00015031548	fam43a (ENSSFOG00015028212)	b3gnt7 (ENSSFOG00015013183)	ENSSFOG00015013153	ENSSFOG00015031576	DIS3L2 (ENSSFOG00015013209)	ACAP2 (ENSSFOG00015013347)	HTR2B (ENSSFOG00015026796)
P. kingsleyae	MODERN SPECIES	57	zgc:153115 (ENSPKIG00000007585)	ENSPKIG00000007500	ENSPKIG00000007386	tsen15 (ENSPKIG00000007319)	ENSPKIG00000007290	ENSPKIG00000007265	sec22ba (ENSPKIG00000007222)	imp3 (ENSPKIG00000007169)	ENSPKIG00000007140	ENSPKIG00000007106	slc35a3a (ENSPKIG00000007060)	cmpk (ENSPKIG00000007044)	smx5 (ENSPKIG00000007028)	bcl6ab (ENSPKIG00000006988) #18	lpp (ENSPKIG00000006935) #20	TP63 (ENSPKIG00000006881) #22	P3H2 (ENSPKIG00000006833) #23	CLDN1 (ENSPKIG00000006777) #24	ENSPKIG00000006742 #31	ENSPKIG00000006724	ENSPKIG00000006596	her6 (ENSPKIG00000006529)	OPA1 (ENSPKIG00000006473)	ENSPKIG00000006296	fam43a (ENSPKIG00000006228)	b3gnt7 (ENSPKIG00000006213)	NPPC (ENSPKIG00000006200)	DIS3L2 (ENSPKIG00000006103)	alpi.2 (ENSPKIG00000006032)	ACAP2 (ENSPKIG00000005786)	HTR2B (ENSPKIG00000005685)
Clupeocephala	ANCESTRAL SPECIES	44	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000157247.b	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22
Otomorpha	ANCESTRAL SPECIES	59	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22
Clupeiformes	ANCESTRAL SPECIES	111						ENSGT00950000186445	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000155751.a	ENSGT00950000182917.a.b.a	ENSGT00730000110988.wb.b.f	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.a	ENSGT00390000001724.l	ENSGT00530000063821.a	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000157546	ENSGT00940000165232	ENSGT00940000154130.a.a.b
Atlantic herring	MODERN SPECIES	1	fsd1 (ENSCHAG00000027494)	ENSCHAG00000000387	cpox (ENSCHAG00000000436)	prrg1 (ENSCHAG00000000469)	tmem47 (ENSCHAG00000000511)	ENSCHAG00000000543	tab3 (ENSCHAG00000000768)	ENSCHAG00000001003	ENSCHAG00000001046	ENSCHAG00000001063	dpt (ENSCHAG00000001272)	atp1b1a (ENSCHAG00000001285)	lpp (ENSCHAG00000001327) #20	ENSCHAG00000001411	tprg1 (ENSCHAG00000001439) #21	tp63 (ENSCHAG00000001532) #22	zgc:92591 (ENSCHAG00000002983)	EPS15 (ENSCHAG00000003036)	TTC39A (ENSCHAG00000003431)	ENSCHAG00000005784	cdkn2c (ENSCHAG00000005802)	faf1 (ENSCHAG00000005915)	dmrta2 (ENSCHAG00000008219)	elavl4 (ENSCHAG00000008272)	AGBL4 (ENSCHAG00000008915)	spata6 (ENSCHAG00000008998)	ENSCHAG00000009014	gclm (ENSCHAG00000009037)	slc5a9 (ENSCHAG00000009121)	zgc:171480 (ENSCHAG00000009784)	paox1 (ENSCHAG00000009791)
Denticle herring	MODERN SPECIES	4	cpox (ENSDCDG00000018148)	prrg1 (ENSDCDG00000018142)	tmem47 (ENSDCDG00000018138)	tab3 (ENSDCDG00000018131)	BIVM (ENSDCDG00000018125)	zgc:172121 (ENSDCDG00000018120)	nme7 (ENSDCDG00000018089)	atp1b1a (ENSDCDG00000018085)	ENSDCDG00000018084	dpt (ENSDCDG00000018069)	zbtb11 (ENSDCDG00000018058)	si:ch73-14h10.2 (ENSDCDG00000018056)	bcl6aa (ENSDCDG00000018051) #18	lpp (ENSDCDG00000018041) #20	tprg1 (ENSDCDG00000018026) #21	tp63 (ENSDCDG00000016275) #22	EPS15 (ENSDCDG00000015400)	TTC39A (ENSDCDG00000010326)	RNF11 (ENSDCDG00000010028)	cdkn2c (ENSDCDG00000010020)	faf1 (ENSDCDG00000005390)	dmrta2 (ENSDCDG00000005360)	elavl4 (ENSDCDG00000005159)	bend5 (ENSDCDG00000005117)	AGBL4 (ENSDCDG00000005104)	spata6 (ENSDCDG00000005081)	ENSDCDG00000005072	gclm (ENSDCDG00000005066)	slc5a9 (ENSDCDG00000004636)	zgc:171480 (ENSDCDG00000004575)	paox1 (ENSDCDG00000004570)
Otophysi	ANCESTRAL SPECIES	32	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00390000000191.l	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00390000000191.l	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460
Channel catfish	MODERN SPECIES	2	glulb (ENSIPUG00000011602)	glulb (ENSIPUG00000011552)	pbx1b (ENSIPUG00000011492)	med8 (ENSIPUG00000011422)	cep63 (ENSIPUG00000011353)	amotl2 (ENSIPUG00000011317)	SAP130 (ENSIPUG00000011200)	ENSIPUG00000011151	ENSIPUG00000011055	gpr17 (ENSIPUG00000011042)	inpp5d (ENSIPUG00000010594)	smx5 (ENSIPUG00000010539)	bcl6 (ENSIPUG00000010505) #18	lpp (ENSIPUG00000010396) #20	TPRG1L (ENSIPUG00000010351) #21	tp63 (ENSIPUG00000010314) #22	tbc1d23 (ENSIPUG00000010243)	tomm70 (ENSIPUG00000010157)	c11h1orf146 (ENSIPUG00000010133)	glmnb (ENSIPUG00000010098)	gfi1ab (ENSIPUG00000010071)	evi5 (ENSIPUG00000009873)	rpl5b (ENSIPUG00000009689)	DIPK1A (ENSIPUG00000009639)	zbtb11 (ENSIPUG00000009604)	dpt (ENSIPUG00000009582)	atp1b1a (ENSIPUG00000009526)	nme7 (ENSIPUG00000009418)	zgc:172121 (ENSIPUG00000009391)	bivm (ENSIPUG00000009377)	si:ch211-201h21.5 (ENSIPUG00000009356)
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00390000000191.l	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460
Characoidei	ANCESTRAL SPECIES		ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00390000000191.l	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460
Red-bellied piranha	MODERN SPECIES	54	ryk (ENSPNAG00000028535)	SLCO2A1 (ENSPNAG00000005908)	rab6ba (ENSPNAG00000028379)	im:7152348 (ENSPNAG00000004341)	cep63 (ENSPNAG00000028345)	amotl2a (ENSPNAG00000028228)	sap130a (ENSPNAG00000028207)	ENSPNAG00000004296	GPR17 (ENSPNAG00000027848)	INPP5D (ENSPNAG00000027826)	si:ch73-14h10.2 (ENSPNAG00000027769)	bcl6aa (ENSPNAG00000005219) #18	lpp (ENSPNAG00000006107) #20	ENSPNAG00000005275	tprg1 (ENSPNAG00000006916) #21	tp63 (ENSPNAG00000027569) #22	tbc1d23 (ENSPNAG00000027529)	tomm70a (ENSPNAG00000027449)	C1orf146 (ENSPNAG00000006150)	glmnb (ENSPNAG00000027342)	gfi1ab (ENSPNAG00000027258)	EVI5 (ENSPNAG00000027233)	rpl5b (ENSPNAG00000004187)	DIPK1A (ENSPNAG00000027122)	zbtb11 (ENSPNAG00000027087)	dpt (ENSPNAG00000027075)	atp1b1a (ENSPNAG00000027045)	nme7 (ENSPNAG00000005268)	zgc:172121 (ENSPNAG00000005724)	BIVM (ENSPNAG00000026906)	si:ch211-201h21.5 (ENSPNAG00000005032)
Mexicana tetra	MODERN SPECIES	4	ryk (ENSAMXG00000040351)	SLCO2A1 (ENSAMXG00000033126)	rab6ba (ENSAMXG00000004630)	im:7152348 (ENSAMXG00000033579)	cep63 (ENSAMXG00000004635)	amotl2a (ENSAMXG00000004645)	sap130a (ENSAMXG00000004665)	ENSAMXG00000004694	GPR17 (ENSAMXG00000025589)	ENSAMXG00000004736	si:ch73-14h10.2 (ENSAMXG00000036868)	bcl6aa (ENSAMXG00000004743) #18	lpp (ENSAMXG00000037269) #20	tprg1 (ENSAMXG00000030461) #21	ENSAMXG00000036891	tp63 (ENSAMXG00000004843) #22	tbc1d23 (ENSAMXG00000004842)	ENSAMXG00000029369	ENSAMXG00000040591	MYLK (ENSAMXG00000015117)	gmppab (ENSAMXG00000015068)	asic4b (ENSAMXG00000037643)	ENSAMXG00000040259	ENSAMXG00000042561	CHPF (ENSAMXG00000042101)	ENSAMXG00000037439	cdk5r2a (ENSAMXG00000026091)	cryba2a (ENSAMXG00000002203)	tmem198b (ENSAMXG00000002185)	desmb (ENSAMXG00000002143)	dnpep (ENSAMXG00000002139)
Electric eel	MODERN SPECIES	112	KLHL30 (ENSEEEG00000005378)	ryk (ENSEEEG00000005386)	SLCO2A1 (ENSEEEG00000005392)	rab6ba (ENSEEEG00000005411)	im:7152348 (ENSEEEG00000005470)	cep63 (ENSEEEG00000005474)	amotl2a (ENSEEEG00000005477)	sap130a (ENSEEEG00000005481)	ENSEEEG00000005493	GPR17 (ENSEEEG00000005535)	INPP5D (ENSEEEG00000005547)	si:ch73-14h10.2 (ENSEEEG00000005559)	bcl6aa (ENSEEEG00000005565) #18	lpp (ENSEEEG00000005566) #20	tprg1 (ENSEEEG00000005568) #21	tp63 (ENSEEEG00000005574) #22	tbc1d23 (ENSEEEG00000005678)	tomm70a (ENSEEEG00000005859)	C1orf146 (ENSEEEG00000006041)	glmnb (ENSEEEG00000006043)	gfi1ab (ENSEEEG00000006047)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00390000000191.l	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460
Zebrafish	MODERN SPECIES	21	ENSDARG00000116807	im:7152348 (ENSDARG00000097082)	cep63 (ENSDARG00000056862)	amotl2a (ENSDARG00000061923)	sap130a (ENSDARG00000056924)	MYO7B (ENSDARG00000044441)	ENSDARG00000094521	GPR17 (ENSDARG00000062030)	INPP5D (ENSDARG00000074283)	smx5 (ENSDARG00000070867)	LSM2 (ENSDARG00000103066)	bcl6aa (ENSDARG00000070864) #18	lpp (ENSDARG00000023578) #20	ENSDARG00000114184	tprg1 (ENSDARG00000056026) #21	tp63 (ENSDARG00000044356) #22	tbc1d23 (ENSDARG00000044357)	tomm70a (ENSDARG00000029639)	glmnb (ENSDARG00000010958)	gfi1ab (ENSDARG00000044457)	EVI5 (ENSDARG00000070839)	rpl5b (ENSDARG00000015862)	DIPK1A (ENSDARG00000061362)	zbtb11 (ENSDARG00000017886)	dpt (ENSDARG00000056178)	atp1b1a (ENSDARG00000013144)	nme7 (ENSDARG00000056193)	zgc:172121 (ENSDARG00000034430)	BIVM (ENSDARG00000061409)	si:ch211-201h21.5 (ENSDARG00000056203)	TMEM131 (ENSDARG00000056259)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	41	ENSGT00940000158597.d	ENSGT00940000160730.a	ENSGT00940000155119.c	ENSGT01080000257336.a.c.b.e	ENSGT00940000159656.a.a.c	ENSGT00940000153190.B.b.b	ENSGT00940000156577.a.a	ENSGT00440000037733.f.b	ENSGT00940000157247.a.a.a	ENSGT01100000263537.b.a.a.b.a.e	ENSGT00940000156202.a.e	ENSGT00390000016597	ENSGT00940000156311.b.a.g #18	ENSGT00940000156022.b.g #20	ENSGT00390000001652.f.b.c #21	ENSGT00950000183153.c.b.a.a.e.a #22	ENSGT00390000000191.l.a	ENSGT00940000157095.c	ENSGT00390000008285.c	ENSGT00390000018446.a.b	ENSGT00940000156166.a.i.b.c.a	ENSGT00940000153846.a.a.d.b	ENSGT00950000183210.g.a.a.a	ENSGT00390000006452.b.b.g.a	ENSGT00900000141090.n	ENSGT00390000010760.f.d	ENSGT01030000234579.C.k.a.a	ENSGT00940000158946.c	ENSGT00510000049619.b	ENSGT00510000048601.a.m	ENSGT00940000166460.d
Goldfish	MODERN SPECIES	24	SNED1 (ENSCARG00000069849)	ryk (ENSCARG00000069808)	SLCO2A1 (ENSCARG00000069794)	ENSCARG00000069792	rab6ba (ENSCARG00000069786)	cep63 (ENSCARG00000069778)	amotl2a (ENSCARG00000069775)	sap130a (ENSCARG00000069664)	MYO7B (ENSCARG00000069444)	GPR17 (ENSCARG00000069358)	ENSCARG00000069194	LSM2 (ENSCARG00000069139)	bcl6aa (ENSCARG00000069133) #18	lpp (ENSCARG00000069118) #20	tprg1 (ENSCARG00000069108) #21	tp63 (ENSCARG00000068357) #22	tbc1d23 (ENSCARG00000068136)	tomm70a (ENSCARG00000067955)	C1orf146 (ENSCARG00000067925)	glmnb (ENSCARG00000067898)	gfi1ab (ENSCARG00000067884)	EVI5 (ENSCARG00000067652)	rpl5b (ENSCARG00000067626)	DIPK1A (ENSCARG00000067616)	zbtb11 (ENSCARG00000067542)	dpt (ENSCARG00000067530)	atp1b1a (ENSCARG00000067515)	nme7 (ENSCARG00000067427)	zgc:172121 (ENSCARG00000067403)	BIVM (ENSCARG00000067375)	si:ch211-201h21.5 (ENSCARG00000067367)
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00940000158597.d	ENSGT00940000160730.a	ENSGT00940000155119.c	ENSGT01080000257336.a.c.b.e	ENSGT00940000159656.a.a.c	ENSGT00940000153190.B.b.b	ENSGT00940000156577.a.a	ENSGT00440000037733.f.b	ENSGT00940000157247.a.a.a	ENSGT01100000263537.b.a.a.b.a.e	ENSGT00940000156202.a.e	ENSGT00390000016597	ENSGT00940000156311.b.a.g #18	ENSGT00940000156022.b.g #20	ENSGT00390000001652.f.b.c #21	ENSGT00950000183153.c.b.a.a.e.a #22	ENSGT00390000000191.l.a	ENSGT00940000157095.c	ENSGT00390000008285.c	ENSGT00390000018446.a.b	ENSGT00940000156166.a.i.b.c.a	ENSGT00940000153846.a.a.d.b	ENSGT00950000183210.g.a.a.a	ENSGT00390000006452.b.b.g.a	ENSGT00900000141090.n.a	ENSGT00390000010760.f.d	ENSGT01030000234579.C.k.a.a	ENSGT00940000158946.c	ENSGT00510000049619.b	ENSGT00510000048601.a.m	ENSGT00940000166460.d
Common carp reference	MODERN SPECIES	16	ryk (ENSCCRG00000075021)	ENSCCRG00000069745	rab6ba (ENSCCRG00000077036)	cep63 (ENSCCRG00000008140)	amotl2a (ENSCCRG00000082799)	sap130a (ENSCCRG00000016768)	ENSCCRG00000069748	ENSCCRG00000053398	ENSCCRG00000064792	ENSCCRG00000030266	si:ch73-14h10.2 (ENSCCRG00000056508)	bcl6aa (ENSCCRG00000016321) #18	lpp (ENSCCRG00000058129) #20	ENSCCRG00000081413	tprg1 (ENSCCRG00000039868) #21	tp63 (ENSCCRG00000011306) #22	tbc1d23 (ENSCCRG00000011137)	tomm70a (ENSCCRG00000068468)	ENSCCRG00000013474	glmnb (ENSCCRG00000013476)	EVI5 (ENSCCRG00000065334)	rpl5b (ENSCCRG00000029305)	DIPK1A (ENSCCRG00000060017)	zbtb11 (ENSCCRG00000029272)	nme7 (ENSCCRG00000029218)	dpt (ENSCCRG00000082064)	atp1b1a (ENSCCRG00000061614)	zgc:172121 (ENSCCRG00000061445)	ENSCCRG00000048872	si:ch211-201h21.5 (ENSCCRG00000048868)	ENSCCRG00000047419
Golden-line barbel	MODERN SPECIES	2169																tp63 (ENSSGRG00000010378) #22	tbc1d23 (ENSSGRG00000009170)	tomm70a (ENSSGRG00000008721)
Cyprininae	ANCESTRAL SPECIES	12	ENSGT00940000164964.a.b	ENSGT00940000160730.b	ENSGT00940000155119.d	ENSGT01080000257336.a.c.b.f	ENSGT00940000159656.a.a.d	ENSGT00730000112922	ENSGT00940000153190.B.b.a	ENSGT00940000156577.a.b	ENSGT00440000037733.f.a	ENSGT00940000157247.a.a.b	ENSGT01100000263537.b.a.a.b.a.f	ENSGT00940000156202.a.f	ENSGT00940000156311.b.a.h #18	ENSGT00940000156022.b.h #20	ENSGT00390000001652.f.b.d #21	ENSGT00950000183153.c.b.a.a.e.b #22	ENSGT00390000000191.l.b	ENSGT00940000157095.d	ENSGT00390000008285.d	ENSGT00390000018446.a.a	ENSGT00940000156166.a.i.b.d	ENSGT00940000153846.a.a.d.a	ENSGT00950000183210.g.a.a.b	ENSGT00390000006452.b.b.g.b	ENSGT00390000010760.f.c	ENSGT01030000234579.C.k.b	ENSGT00940000158946.d	ENSGT00510000049619.a	ENSGT00510000048601.a.n	ENSGT00940000166460.c	ENSGT00530000063614.a.a.wb
Goldfish	MODERN SPECIES	46	ENSCARG00000017739	KLHL30 (ENSCARG00000017779)	ENSCARG00000017796	ryk (ENSCARG00000017918)	SLCO2A1 (ENSCARG00000018393)	rab6ba (ENSCARG00000018468)	im:7152348 (ENSCARG00000018676)	amotl2a (ENSCARG00000018685)	ENSCARG00000018724	GPR17 (ENSCARG00000019002)	INPP5D (ENSCARG00000019090)	LSM2 (ENSCARG00000020328)	bcl6aa (ENSCARG00000020344) #18	lpp (ENSCARG00000020387) #20	tprg1 (ENSCARG00000020410) #21	tp63 (ENSCARG00000020523) #22	tbc1d23 (ENSCARG00000023010)	ENSCARG00000023812	gfi1ab (ENSCARG00000023817)	EVI5 (ENSCARG00000023843)	rpl5b (ENSCARG00000024020)	DIPK1A (ENSCARG00000024043)	ENSCARG00000024130	TMEM131 (ENSCARG00000024215)	dpt (ENSCARG00000026349)	atp1b1a (ENSCARG00000026358)	nme7 (ENSCARG00000000194)	zgc:172121 (ENSCARG00000000230)	BIVM (ENSCARG00000000259)	si:ch211-201h21.5 (ENSCARG00000000279)	actl6a (ENSCARG00000000347)
Cyprininae_a	ANCESTRAL SPECIES	23	ENSGT00940000160730.b	ENSGT00940000155119.d	ENSGT01080000257336.a.c.b.f	ENSGT00940000154769.id	ENSGT00940000159656.a.a.d	ENSGT00730000112922	ENSGT00940000153190.B.b.a	ENSGT00940000156577.a.b	ENSGT00440000037733.f.a	ENSGT00940000157247.a.a.b	ENSGT01100000263537.b.a.a.b.a.f	ENSGT00940000156202.a.f	ENSGT00940000156311.b.a.h #18	ENSGT00940000156022.b.h #20	ENSGT00390000001652.f.b.d #21	ENSGT00950000183153.c.b.a.a.e.b #22	ENSGT00390000000191.l.b	ENSGT00940000157095.d	ENSGT00390000008285.d	ENSGT00390000018446.a.a	ENSGT00940000156166.a.i.b.d	ENSGT00940000153846.a.a.d.a	ENSGT00950000183210.g.a.a.b	ENSGT00390000006452.b.b.g.b	ENSGT00900000141090.n.b	ENSGT00390000010760.f.c	ENSGT01030000234579.C.k.b	ENSGT00940000166950	ENSGT01030000234579.C.k.a.b	ENSGT00940000158946.d	ENSGT00510000049619.a
Golden-line barbel	MODERN SPECIES	130						im:7152348 (ENSSGRG00000019293)	cep63 (ENSSGRG00000019292)	amotl2a (ENSSGRG00000019291)	sap130a (ENSSGRG00000019276)	MYO7B (ENSSGRG00000019273)	GPR17 (ENSSGRG00000019272)	ENSSGRG00000019251	bcl6aa (ENSSGRG00000019230) #18	lpp (ENSSGRG00000019214) #20	tprg1 (ENSSGRG00000019210) #21	tp63 (ENSSGRG00000018787) #22	tbc1d23 (ENSSGRG00000018242)	tomm70a (ENSSGRG00000017897)	glmnb (ENSSGRG00000017896)	EVI5 (ENSSGRG00000017878)	rpl5b (ENSSGRG00000017874)	DIPK1A (ENSSGRG00000017857)	zbtb11 (ENSSGRG00000017854)	dpt (ENSSGRG00000017853)	atp1b1a (ENSSGRG00000017850)	nme7 (ENSSGRG00000017833)	zgc:172121 (ENSSGRG00000017832)	si:ch211-201h21.5 (ENSSGRG00000017826)	BIVM (ENSSGRG00000017816)	TMEM131 (ENSSGRG00000017812)	actl6a (ENSSGRG00000017444)
Common carp reference	MODERN SPECIES	10	ENSCCRG00000045645	ryk (ENSCCRG00000022292)	ENSCCRG00000045528	ENSCCRG00000036534	rab6ba (ENSCCRG00000059488)	im:7152348 (ENSCCRG00000062391)	cep63 (ENSCCRG00000045547)	amotl2a (ENSCCRG00000016796)	sap130a (ENSCCRG00000033891)	ENSCCRG00000074822	ENSCCRG00000068649	ENSCCRG00000030619	bcl6aa (ENSCCRG00000029746) #18	lpp (ENSCCRG00000003617) #20	tprg1 (ENSCCRG00000037071) #21	tp63 (ENSCCRG00000038305) #22	tbc1d23 (ENSCCRG00000011457)	tomm70a (ENSCCRG00000011556)	ENSCCRG00000073892	glmnb (ENSCCRG00000024676)	gfi1ab (ENSCCRG00000021712)	EVI5 (ENSCCRG00000013487)	rpl5b (ENSCCRG00000029284)	DIPK1A (ENSCCRG00000029301)	zbtb11 (ENSCCRG00000007686)	dpt (ENSCCRG00000048884)	atp1b1a (ENSCCRG00000067632)	ENSCCRG00000048875	zgc:172121 (ENSCCRG00000080287)	ENSCCRG00000048896	si:ch211-201h21.5 (ENSCCRG00000048894)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.f #22
Goldfish	MODERN SPECIES	2513																ENSCARG00000046209 #22	ENSCARG00000046277	ENSCARG00000046285	ENSCARG00000046306	ENSCARG00000046316	ANK2 (ENSCARG00000046438)	ENSCARG00000050866	ENSCARG00000050877
Euteleosteomorpha	ANCESTRAL SPECIES	23	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.s.b	ENSGT00950000186445	ENSGT00390000010760.f	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000156074.b	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a
Acanthomorphata	ANCESTRAL SPECIES	21	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000156074.b	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a
Cod	MODERN SPECIES	3	ryk (ENSGMOG00000018864)	ENSGMOG00000018947	rab6ba (ENSGMOG00000009471)	im:7152348 (ENSGMOG00000011944)	ENSGMOG00000020303	amotl2a (ENSGMOG00000030822)	ENSGMOG00000030527	sap130a (ENSGMOG00000019116)	ENSGMOG00000019141	ENSGMOG00000024831	ENSGMOG00000019190	smx5 (ENSGMOG00000019208)	bcl6aa (ENSGMOG00000024049) #18	lpp (ENSGMOG00000006297) #20	tprg1 (ENSGMOG00000006311) #21	tp63 (ENSGMOG00000000413) #22	ENSGMOG00000030379	ENSGMOG00000033586	zgc:153738 (ENSGMOG00000014061)	alkal1 (ENSGMOG00000029330)	ENSGMOG00000014016	nexn (ENSGMOG00000013976)	tab3 (ENSGMOG00000036164)	tmem47 (ENSGMOG00000033722)	prrg1 (ENSGMOG00000013941)	cpox (ENSGMOG00000013914)	ENSGMOG00000026942	ENSGMOG00000001368	ENSGMOG00000031080	ENSGMOG00000018523	ABHD8 (ENSGMOG00000035550)
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000156074.b	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a
Pinecone sodierfish	MODERN SPECIES	18	KLHL30 (ENSMMDG00005021499)	SNED1 (ENSMMDG00005021492)	ryk (ENSMMDG00005021295)	SLCO2A1 (ENSMMDG00005021271)	rab6ba (ENSMMDG00005021265)	cep63 (ENSMMDG00005021262)	amotl2a (ENSMMDG00005021261)	sap130a (ENSMMDG00005020204)	ENSMMDG00005020165	GPR17 (ENSMMDG00005020152)	INPP5D (ENSMMDG00005020146)	smx5 (ENSMMDG00005020144)	bcl6aa (ENSMMDG00005020141) #18	lpp (ENSMMDG00005020138) #20	tprg1 (ENSMMDG00005020137) #21	tp63 (ENSMMDG00005019683) #22	zbtb11 (ENSMMDG00005019671)	dpt (ENSMMDG00005019669)	atp1b1b (ENSMMDG00005019666)	nme7 (ENSMMDG00005019532)	zgc:172121 (ENSMMDG00005019501)	BIVM (ENSMMDG00005019496)	si:ch211-201h21.5 (ENSMMDG00005019494)	TMEM131 (ENSMMDG00005018054)	CNGA3 (ENSMMDG00005018026)	ube3a (ENSMMDG00005018018)	ATP10A (ENSMMDG00005017988)	GABRB3 (ENSMMDG00005017960)	GABRA5 (ENSMMDG00005017261)	GABRG3 (ENSMMDG00005017233)	OCA2 (ENSMMDG00005017219)
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000157247.b	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000156074.b	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a
Tiger tail seahorse	MODERN SPECIES	469	ENSHCOG00000014375	KIF1A (ENSHCOG00000014344)	ttc39c (ENSHCOG00000014323)	zgc:103559 (ENSHCOG00000014297)	agxta (ENSHCOG00000014275)	ENSHCOG00000014202	amotl2a (ENSHCOG00000014193)	sap130a (ENSHCOG00000014176)	ENSHCOG00000014164	GPR17 (ENSHCOG00000014075)	INPP5D (ENSHCOG00000014071)	smx5 (ENSHCOG00000014057)	bcl6aa (ENSHCOG00000014038) #18	lpp (ENSHCOG00000014025) #20	tprg1 (ENSHCOG00000013940) #21	tp63 (ENSHCOG00000013928) #22	ENSHCOG00000013898	dpt (ENSHCOG00000013880)	ATP1B1 (ENSHCOG00000013859)	ENSHCOG00000013842	nme7 (ENSHCOG00000013834)	zgc:172121 (ENSHCOG00000013784)	BIVM (ENSHCOG00000013774)	si:ch211-201h21.5 (ENSHCOG00000013752)	TMEM131 (ENSHCOG00000013631)	CNGA3 (ENSHCOG00000013535)	ENSHCOG00000013507	ENSHCOG00000013479	ENSHCOG00000013433	ENSHCOG00000013382	ENSHCOG00000000384
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000157247.b	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d	ENSGT00940000156234.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000156074.b	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Tetraodontidae	ANCESTRAL SPECIES	27	ENSGT00940000154382.a.a	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a	ENSGT00950000183210.g.a	ENSGT00390000006452.b.b.g	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Tetraodon	MODERN SPECIES		EPHX4 (ENSTNIG00000013761)	ENSTNIG00000013762	glmnb (ENSTNIG00000001477)	gfi1ab (ENSTNIG00000000651)	EVI5 (ENSTNIG00000013763)	rpl5b (ENSTNIG00000013764)	DIPK1A (ENSTNIG00000013765)	sap130a (ENSTNIG00000013766)	ENSTNIG00000013767	GPR17 (ENSTNIG00000013768)	ENSTNIG00000013769	smx5 (ENSTNIG00000013770)	bcl6aa (ENSTNIG00000013771) #18	lpp (ENSTNIG00000013772) #20	tprg1 (ENSTNIG00000013773) #21	tp63 (ENSTNIG00000013774) #22	zbtb11 (ENSTNIG00000013775)	dpt (ENSTNIG00000013776)	ATP1B1 (ENSTNIG00000013777)	nme7 (ENSTNIG00000013778)	zgc:172121 (ENSTNIG00000013779)	BIVM (ENSTNIG00000013780)	si:ch211-201h21.5 (ENSTNIG00000013781)	TMEM131 (ENSTNIG00000013782)	CNGA3 (ENSTNIG00000013783)	ube3a (ENSTNIG00000013784)	ATP10A (ENSTNIG00000013785)	GABRB3 (ENSTNIG00000010648)	GABRA5 (ENSTNIG00000010649)	GABRG3 (ENSTNIG00000010650)	OCA2 (ENSTNIG00000010651)
Fugu	MODERN SPECIES	12	ENSTRUG00000000368	ENSTRUG00000031325	C1orf146 (ENSTRUG00000020683)	glmnb (ENSTRUG00000000383)	gfi1ab (ENSTRUG00000000415)	EVI5 (ENSTRUG00000000437)	rpl5b (ENSTRUG00000000524)	DIPK1A (ENSTRUG00000000590)	sap130a (ENSTRUG00000000628)	ENSTRUG00000000755	GPR17 (ENSTRUG00000001244)	INPP5D (ENSTRUG00000001313)	bcl6aa (ENSTRUG00000002214) #18	lpp (ENSTRUG00000002677) #20	tprg1 (ENSTRUG00000003153) #21	tp63 (ENSTRUG00000003420) #22	zbtb11 (ENSTRUG00000004329)	ATP1B1 (ENSTRUG00000023651)	dpt (ENSTRUG00000023954)	nme7 (ENSTRUG00000019681)	ENSTRUG00000030706	zgc:172121 (ENSTRUG00000005847)	BIVM (ENSTRUG00000005881)	si:ch211-201h21.5 (ENSTRUG00000006027)	TMEM131 (ENSTRUG00000006114)	CNGA3 (ENSTRUG00000006545)	ube3a (ENSTRUG00000006748)	ENSTRUG00000031703	ENSTRUG00000033259	ATP10A (ENSTRUG00000007000)	GABRB3 (ENSTRUG00000007550)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Ballan wrasse	MODERN SPECIES	2	ENSLBEG00000027018	ryk (ENSLBEG00000026967)	SLCO2A1 (ENSLBEG00000026943)	rab6ba (ENSLBEG00000026930)	im:7152348 (ENSLBEG00000026920)	ENSLBEG00000026908	amotl2a (ENSLBEG00000026890)	sap130a (ENSLBEG00000026766)	ENSLBEG00000026247	GPR17 (ENSLBEG00000025993)	INPP5D (ENSLBEG00000025835)	smx5 (ENSLBEG00000025781)	bcl6aa (ENSLBEG00000025751) #18	lpp (ENSLBEG00000025728) #20	tprg1 (ENSLBEG00000025715) #21	tp63 (ENSLBEG00000025637) #22	zbtb11 (ENSLBEG00000025568)	dpt (ENSLBEG00000025552)	ATP1B1 (ENSLBEG00000025529)	nme7 (ENSLBEG00000025504)	zgc:172121 (ENSLBEG00000025460)	BIVM (ENSLBEG00000025429)	plekhb2 (ENSLBEG00000025392)	si:ch211-201h21.5 (ENSLBEG00000025371)	TMEM131 (ENSLBEG00000025261)	CNGA3 (ENSLBEG00000025206)	ube3a (ENSLBEG00000025168)	ATP10A (ENSLBEG00000025124)	GABRB3 (ENSLBEG00000025070)	GABRA5 (ENSLBEG00000025020)	GABRG3 (ENSLBEG00000024966)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
European seabass	MODERN SPECIES	17	ryk (ENSDLAG00005021158)	ENSDLAG00005021135	rab6ba (ENSDLAG00005021105)	im:7152348 (ENSDLAG00005021103)	cep63 (ENSDLAG00005021100)	amotl2a (ENSDLAG00005021094)	sap130a (ENSDLAG00005020281)	ENSDLAG00005019729	ENSDLAG00005019662	smx5 (ENSDLAG00005019631)	bcl6aa (ENSDLAG00005019592) #18	lpp (ENSDLAG00005019565) #20	tprg1 (ENSDLAG00005019556) #21	ENSDLAG00005019244	DPT (ENSDLAG00005019220)	ENSDLAG00005019354 #22	ENSDLAG00005031886	nme7 (ENSDLAG00005032296)	zgc:172121 (ENSDLAG00005019073)	ENSDLAG00005032059	si:ch211-201h21.5 (ENSDLAG00005032019)	ENSDLAG00005017985	ENSDLAG00005017939	ube3a (ENSDLAG00005017855)	ATP10A (ENSDLAG00005017439)	GABRB3 (ENSDLAG00005017323)	GABRA5 (ENSDLAG00005017107)	GABRG3 (ENSDLAG00005017038)	OCA2 (ENSDLAG00005016571)	HERC2 (ENSDLAG00005015382)	nipa1 (ENSDLAG00005027537)
Large yellow croaker	MODERN SPECIES	489	SNED1 (ENSLCRG00005013276)	ENSLCRG00005013273	ryk (ENSLCRG00005012617)	SLCO2A1 (ENSLCRG00005012607)	rab6ba (ENSLCRG00005012594)	cep63 (ENSLCRG00005012589)	amotl2a (ENSLCRG00005012586)	sap130a (ENSLCRG00005012045)	MYO7B (ENSLCRG00005011902)	GPR17 (ENSLCRG00005011898)	INPP5D (ENSLCRG00005010799)	smx5 (ENSLCRG00005010796)	bcl6aa (ENSLCRG00005010795) #18	lpp (ENSLCRG00005010790) #20	tprg1 (ENSLCRG00005010789) #21	tp63 (ENSLCRG00005009353) #22	ENSLCRG00005009342	ATP1B1 (ENSLCRG00005009340)	zgc:172121 (ENSLCRG00005009338)	nme7 (ENSLCRG00005009336)	BIVM (ENSLCRG00005009328)	si:ch211-201h21.5 (ENSLCRG00005009325)	TMEM131 (ENSLCRG00005009085)	CNGA3 (ENSLCRG00005009079)	ube3a (ENSLCRG00005009077)	ATP10A (ENSLCRG00005008878)	GABRB3 (ENSLCRG00005008625)	GABRA5 (ENSLCRG00005008610)	GABRG3 (ENSLCRG00005008606)	OCA2 (ENSLCRG00005008588)	HERC2 (ENSLCRG00005007758)
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010013822	SNED1 (ENSSAUG00010013834)	ryk (ENSSAUG00010001363)	SLCO2A1 (ENSSAUG00010002037)	rab6ba (ENSSAUG00010002059)	im:7152348 (ENSSAUG00010002072)	cep63 (ENSSAUG00010002079)	amotl2a (ENSSAUG00010002085)	sap130a (ENSSAUG00010002193)	MYO7B (ENSSAUG00010005738)	GPR17 (ENSSAUG00010007403)	INPP5D (ENSSAUG00010007412)	smx5 (ENSSAUG00010007481)	bcl6aa (ENSSAUG00010007482) #18	lpp (ENSSAUG00010007485) #20	tp63 (ENSSAUG00010007523) #22	ENSSAUG00010008653	dpt (ENSSAUG00010008673)	ATP1B1 (ENSSAUG00010008677)	nme7 (ENSSAUG00010008680)	zgc:172121 (ENSSAUG00010008722)	BIVM (ENSSAUG00010008723)	si:ch211-201h21.5 (ENSSAUG00010008724)	TMEM131 (ENSSAUG00010008738)	CNGA3 (ENSSAUG00010010177)	ube3a (ENSSAUG00010010179)	ATP10A (ENSSAUG00010010224)	GABRB3 (ENSSAUG00010010416)	GABRA5 (ENSSAUG00010011351)	GABRG3 (ENSSAUG00010011353)	OCA2 (ENSSAUG00010011481)
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00530000063404.b	ENSGT00940000155899.e.a	ENSGT00940000156511.b	ENSGT00940000159571	ENSGT00390000010568	ENSGT01050000244887.A.a.b	ENSGT00940000159554	ENSGT00940000157967	ENSGT00390000007310	ENSGT01050000244924.a.a.b.a.a	ENSGT00940000160040.B.a.b	ENSGT00940000159889.b.a	ENSGT00400000024256	ENSGT00940000160006	ENSGT00530000064649	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Stickleback	MODERN SPECIES	8	dbt (ENSGACG00000013457)	rtca (ENSGACG00000013497)	cdc14ab (ENSGACG00000013505)	ENSGACG00000013513	slc30a7 (ENSGACG00000013532)	dph5 (ENSGACG00000013535)	s1pr1 (ENSGACG00000013537)	zbtb37 (ENSGACG00000013541)	serpinc1 (ENSGACG00000013542)	stil (ENSGACG00000013582)	ptbp1b (ENSGACG00000013587)	ENSGACG00000013592	camk4 (ENSGACG00000013599)	fam174c (ENSGACG00000013613)	gadd45ba (ENSGACG00000013618)	tp63 (ENSGACG00000013629) #22	ENSGACG00000013632	zbtb11 (ENSGACG00000013636)	ENSGACG00000013644	dpt (ENSGACG00000013645)	ATP1B1 (ENSGACG00000013647)	nme7 (ENSGACG00000013658)	zgc:172121 (ENSGACG00000013681)	BIVM (ENSGACG00000013697)	TMEM131 (ENSGACG00000013702)	CNGA3 (ENSGACG00000013729)	ube3a (ENSGACG00000013744)	ATP10A (ENSGACG00000013748)	GABRB3 (ENSGACG00000013753)	GABRA5 (ENSGACG00000013764)	GABRG3 (ENSGACG00000013771)
Lumpfish	MODERN SPECIES	19	zbtb37 (ENSCLMG00005006997)	serpinc1 (ENSCLMG00005006828)	stil (ENSCLMG00005006821)	ENSCLMG00005006820	PTBP1 (ENSCLMG00005006492)	EFNA2 (ENSCLMG00005006490)	ENSCLMG00005006489	ENSCLMG00005006488	ENSCLMG00005006487	camk4 (ENSCLMG00005006466)	ENSCLMG00005006465	GADD45B (ENSCLMG00005006178)	ENSCLMG00005006177	ENSCLMG00005006176	ENSCLMG00005006175	tp63 (ENSCLMG00005006130) #22	zbtb11 (ENSCLMG00005006128)	dpt (ENSCLMG00005006127)	ATP1B1 (ENSCLMG00005006063)	nme7 (ENSCLMG00005005477)	ENSCLMG00005005472	zgc:172121 (ENSCLMG00005005470)	si:ch211-201h21.5 (ENSCLMG00005005460)	TMEM131 (ENSCLMG00005003152)	ENSCLMG00005002752	ube3a (ENSCLMG00005002745)	ATP10A (ENSCLMG00005002585)	GABRB3 (ENSCLMG00005002577)	GABRA5 (ENSCLMG00005002576)	ENSCLMG00005002575	GABRG3 (ENSCLMG00005002480)
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Pike perch	MODERN SPECIES	26	ryk (ENSSLUG00000005357)	SLCO2A1 (ENSSLUG00000005512)	rab6ba (ENSSLUG00000005542)	im:7152348 (ENSSLUG00000005610)	ENSSLUG00000005617	amotl2a (ENSSLUG00000005629)	sap130a (ENSSLUG00000005735)	ENSSLUG00000007482	ENSSLUG00000007505	GPR17 (ENSSLUG00000007526)	INPP5D (ENSSLUG00000007543)	smx5 (ENSSLUG00000007580)	bcl6aa (ENSSLUG00000007595) #18	lpp (ENSSLUG00000007610) #20	tprg1 (ENSSLUG00000007669) #21	tp63 (ENSSLUG00000007713) #22	ENSSLUG00000008373	dpt (ENSSLUG00000008398)	ATP1B1 (ENSSLUG00000008408)	nme7 (ENSSLUG00000008473)	zgc:172121 (ENSSLUG00000009082)	BIVM (ENSSLUG00000009102)	si:ch211-201h21.5 (ENSSLUG00000009126)	TMEM131 (ENSSLUG00000009175)
Channel bull blenny	MODERN SPECIES	18	nipa1 (ENSCGOG00000000940)	ENSCGOG00000000939	ENSCGOG00000000777	OCA2 (ENSCGOG00000000766)	GABRG3 (ENSCGOG00000000748)	GABRA5 (ENSCGOG00000000442)	GABRB3 (ENSCGOG00000000349)	ENSCGOG00000000345	ATP10A (ENSCGOG00000000306)	ENSCGOG00000000294	si:ch211-201h21.5 (ENSCGOG00000000292)	BIVM (ENSCGOG00000000290)	ENSCGOG00000000288	zgc:172121 (ENSCGOG00000000286)	ENSCGOG00000000285	tp63 (ENSCGOG00000000256) #22	zbtb11 (ENSCGOG00000000226)	dpt (ENSCGOG00000000217)	ATP1B1 (ENSCGOG00000000207)	nme7 (ENSCGOG00000000124)	zgc:172121 (ENSCGOG00000014855)	BIVM (ENSCGOG00000014849)	si:ch211-201h21.5 (ENSCGOG00000014841)	TMEM131 (ENSCGOG00000014716)	CNGA3 (ENSCGOG00000014710)	ube3a (ENSCGOG00000013962)	CARTPT (ENSCGOG00000013953)	ENSCGOG00000013947	ENSCGOG00000013767	ENSCGOG00000013753	ENSCGOG00000013751
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d	ENSGT00940000156234.a.a
Anabantaria	ANCESTRAL SPECIES	7	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000009538	ryk (ENSMAMG00000009584)	ENSMAMG00000009641	rab6ba (ENSMAMG00000009672)	im:7152348 (ENSMAMG00000009694)	cep63 (ENSMAMG00000009707)	amotl2a (ENSMAMG00000009725)	sap130a (ENSMAMG00000009735)	ENSMAMG00000009766	ENSMAMG00000009981	ENSMAMG00000009985	smx5 (ENSMAMG00000010053)	bcl6aa (ENSMAMG00000010010) #18	lpp (ENSMAMG00000010067) #20	tprg1 (ENSMAMG00000026771) #21	tp63 (ENSMAMG00000010142) #22	ENSMAMG00000010180	dpt (ENSMAMG00000010188)	ENSMAMG00000010199	nme7 (ENSMAMG00000010221)	zgc:172121 (ENSMAMG00000010289)	ENSMAMG00000010277	si:ch211-201h21.5 (ENSMAMG00000010357)	ENSMAMG00000010374	ENSMAMG00000010447	ube3a (ENSMAMG00000010466)	ATP10A (ENSMAMG00000010499)	GABRB3 (ENSMAMG00000010538)	ENSMAMG00000028500	GABRA5 (ENSMAMG00000010573)	GABRG3 (ENSMAMG00000011836)
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT00940000166878	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Climbing perch	MODERN SPECIES	17	ryk (ENSATEG00000010587)	ENSATEG00000010648	rab6ba (ENSATEG00000010666)	im:7152348 (ENSATEG00000010708)	cep63 (ENSATEG00000010724)	amotl2a (ENSATEG00000010780)	sap130a (ENSATEG00000010816)	ENSATEG00000029618	ENSATEG00000010908	ENSATEG00000011346	ENSATEG00000011360	smx5 (ENSATEG00000027281)	bcl6aa (ENSATEG00000011384) #18	lpp (ENSATEG00000011442) #20	tprg1 (ENSATEG00000011483) #21	tp63 (ENSATEG00000011498) #22	ENSATEG00000011539	dpt (ENSATEG00000011551)	ENSATEG00000029473	nme7 (ENSATEG00000011614)	zgc:172121 (ENSATEG00000030161)	ENSATEG00000011710	si:ch211-201h21.5 (ENSATEG00000011731)	ENSATEG00000011746	ENSATEG00000011786	ube3a (ENSATEG00000011812)	ATP10A (ENSATEG00000011849)	GABRB3 (ENSATEG00000028000)	GABRA5 (ENSATEG00000011949)	GABRG3 (ENSATEG00000011974)	OCA2 (ENSATEG00000012000)
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000001702	ryk (ENSBSLG00000001450)	SLCO2A1 (ENSBSLG00000001330)	rab6ba (ENSBSLG00000001271)	im:7152348 (ENSBSLG00000001234)	ENSBSLG00000001223	cep63 (ENSBSLG00000001204)	amotl2a (ENSBSLG00000000887)	sap130a (ENSBSLG00000000840)	MYO7B (ENSBSLG00000000736)	ENSBSLG00000000724	INPP5D (ENSBSLG00000000668)	smx5 (ENSBSLG00000000623)	bcl6aa (ENSBSLG00000000520) #18	lpp (ENSBSLG00000003550) #20	tp63 (ENSBSLG00000003548) #22	ENSBSLG00000003540	dpt (ENSBSLG00000003537)	ATP1B1 (ENSBSLG00000003535)	nme7 (ENSBSLG00000003531)	zgc:172121 (ENSBSLG00000003528)	BIVM (ENSBSLG00000003527)	si:ch211-201h21.5 (ENSBSLG00000003526)	TMEM131 (ENSBSLG00000003525)	CNGA3 (ENSBSLG00000003523)	ube3a (ENSBSLG00000003522)	ATP10A (ENSBSLG00000003517)	GABRB3 (ENSBSLG00000003516)	GABRA5 (ENSBSLG00000003515)	GABRG3 (ENSBSLG00000003514)	OCA2 (ENSBSLG00000003513)
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Seriola	ANCESTRAL SPECIES	139															ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00390000000568	ENSGT00390000008489	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00390000000263
Greater amberjack	MODERN SPECIES	234															tprg1 (ENSSDUG00000008988) #21	tp63 (ENSSDUG00000009041) #22	ENSSDUG00000009123	dpt (ENSSDUG00000009134)	ATP1B1 (ENSSDUG00000009143)	nme7 (ENSSDUG00000009171)	zgc:172121 (ENSSDUG00000009212)	BIVM (ENSSDUG00000009239)	si:ch211-201h21.5 (ENSSDUG00000009255)	TMEM131 (ENSSDUG00000009276)	CNGA3 (ENSSDUG00000009340)	ube3a (ENSSDUG00000009378)	TRAPPC8 (ENSSDUG00000009433)	commd2 (ENSSDUG00000009619)	ENSSDUG00000009633	lmnb2 (ENSSDUG00000009647)	rpl36 (ENSSDUG00000009676)
Yellowtail amberjack	MODERN SPECIES	2670															tprg1 (ENSSLDG00000025268) #21	tp63 (ENSSLDG00000025253) #22	ENSSLDG00000025247	dpt (ENSSLDG00000025244)
Barramundi perch	MODERN SPECIES	106	SNED1 (ENSLCAG00010010823)	ryk (ENSLCAG00010010853)	SLCO2A1 (ENSLCAG00010010969)	rab6ba (ENSLCAG00010010989)	im:7152348 (ENSLCAG00010011005)	cep63 (ENSLCAG00010011009)	amotl2a (ENSLCAG00010011012)	sap130a (ENSLCAG00010011094)	ENSLCAG00010011556	GPR17 (ENSLCAG00010011778)	INPP5D (ENSLCAG00010011836)	smx5 (ENSLCAG00010012098)	bcl6aa (ENSLCAG00010012103) #18	lpp (ENSLCAG00010012106) #20	tprg1 (ENSLCAG00010012113) #21	tp63 (ENSLCAG00010012159) #22	ENSLCAG00010012299	ENSLCAG00010012309	ENSLCAG00010012311	dpt (ENSLCAG00010012319)	ATP1B1 (ENSLCAG00010012327)	nme7 (ENSLCAG00010012402)	zgc:172121 (ENSLCAG00010012655)	BIVM (ENSLCAG00010012659)	si:ch211-201h21.5 (ENSLCAG00010012663)	TMEM131 (ENSLCAG00010012812)	CNGA3 (ENSLCAG00010013347)	ENSLCAG00010013349	ube3a (ENSLCAG00010013353)	ATP10A (ENSLCAG00010013380)	GABRB3 (ENSLCAG00010013423)
Pleuronectoidei	ANCESTRAL SPECIES	40	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT01030000234550.b	ENSGT00940000154975	ENSGT00940000169724
Tongue sole	MODERN SPECIES	11	ENSCSEG00000003175	SNED1 (ENSCSEG00000003155)	ryk (ENSCSEG00000003140)	SLCO2A1 (ENSCSEG00000003131)	rab6ba (ENSCSEG00000003122)	cep63 (ENSCSEG00000003117)	amotl2a (ENSCSEG00000003109)	sap130a (ENSCSEG00000003021)	ENSCSEG00000002987	GPR17 (ENSCSEG00000002983)	INPP5D (ENSCSEG00000002919)	smx5 (ENSCSEG00000002911)	bcl6aa (ENSCSEG00000002879) #18	lpp (ENSCSEG00000002869) #20	tprg1 (ENSCSEG00000002866) #21	tp63 (ENSCSEG00000002862) #22	unc13a (ENSCSEG00000002847)	hmg20b (ENSCSEG00000002841)	ENSCSEG00000002828	rxfp3.2b (ENSCSEG00000002825)	creb3l3a (ENSCSEG00000002809)	celf5a (ENSCSEG00000002800)	ENSCSEG00000002798	rgmd (ENSCSEG00000002785)	hsd11b1la (ENSCSEG00000002780)	hsd11b1la (ENSCSEG00000002768)	micos13 (ENSCSEG00000002761)	ENSCSEG00000002758	ENSCSEG00000002756	ENSCSEG00000002753	fgf22 (ENSCSEG00000002749)
Turbot	MODERN SPECIES	3	ENSSMAG00000001686	ryk (ENSSMAG00000001656)	ENSSMAG00000001634	rab6ba (ENSSMAG00000001615)	im:7152348 (ENSSMAG00000001607)	cep63 (ENSSMAG00000001562)	amotl2a (ENSSMAG00000001543)	sap130a (ENSSMAG00000001505)	ENSSMAG00000001171	ENSSMAG00000001164	ENSSMAG00000001138	smx5 (ENSSMAG00000026432)	bcl6aa (ENSSMAG00000001102) #18	lpp (ENSSMAG00000001016) #20	tprg1 (ENSSMAG00000001003) #21	tp63 (ENSSMAG00000000978) #22	zbtb11 (ENSSMAG00000000940)	dpt (ENSSMAG00000000904)	ENSSMAG00000000869	nme7 (ENSSMAG00000000794)	zgc:172121 (ENSSMAG00000000754)	ENSSMAG00000020264	si:ch211-201h21.5 (ENSSMAG00000020261)	ENSSMAG00000020195	ENSSMAG00000020180	ube3a (ENSSMAG00000020159)	ATP10A (ENSSMAG00000020092)	GABRB3 (ENSSMAG00000020084)	GABRA5 (ENSSMAG00000020075)	GABRG3 (ENSSMAG00000020062)	OCA2 (ENSSMAG00000019891)
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d	ENSGT00940000156234.a.a
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00940000179813	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Aplocheiloidei	ANCESTRAL SPECIES	77							ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00940000179813	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Mangrove rivulus	MODERN SPECIES	71	ENSKMAG00000014333	chd1l (ENSKMAG00000014358)	sft2d2a (ENSKMAG00000014416)	ENSKMAG00000014444	cep63 (ENSKMAG00000014462)	im:7152348 (ENSKMAG00000014482)	amotl2a (ENSKMAG00000014518)	sap130a (ENSKMAG00000014621)	ENSKMAG00000014712	GPR17 (ENSKMAG00000014839)	INPP5D (ENSKMAG00000014854)	smx5 (ENSKMAG00000014909)	bcl6aa (ENSKMAG00000014942) #18	lpp (ENSKMAG00000015006) #20	tprg1 (ENSKMAG00000015046) #21	tp63 (ENSKMAG00000015083) #22	ENSKMAG00000015169	dpt (ENSKMAG00000015183)	ATP1B1 (ENSKMAG00000015208)	nme7 (ENSKMAG00000015255)	zgc:172121 (ENSKMAG00000015312)	BIVM (ENSKMAG00000015343)	si:ch211-201h21.5 (ENSKMAG00000015377)	ENSKMAG00000015395	TMEM131 (ENSKMAG00000015433)	CNGA3 (ENSKMAG00000015496)	ube3a (ENSKMAG00000015531)	ATP10A (ENSKMAG00000015579)	GABRB3 (ENSKMAG00000015618)	GABRA5 (ENSKMAG00000015685)	GABRG3 (ENSKMAG00000015710)
Turquoise killifish	MODERN SPECIES	137															ENSNFUG00015016812	tp63 (ENSNFUG00015016206) #22	ZBTB11 (ENSNFUG00015015995)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00940000179813	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
NAME_4	ANCESTRAL SPECIES	11	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00940000179813	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Mummichog	MODERN SPECIES	2185	SNED1 (ENSFHEG00000008688)	ryk (ENSFHEG00000008730)	SLCO2A1 (ENSFHEG00000008755)	rab6ba (ENSFHEG00000008789)	im:7152348 (ENSFHEG00000008809)	cep63 (ENSFHEG00000008888)	amotl2a (ENSFHEG00000008908)	sap130a (ENSFHEG00000009019)	MYO7B (ENSFHEG00000009457)	GPR17 (ENSFHEG00000009475)	INPP5D (ENSFHEG00000009590)	smx5 (ENSFHEG00000009619)	bcl6aa (ENSFHEG00000009639) #18	lpp (ENSFHEG00000009724) #20	tprg1 (ENSFHEG00000009756) #21	tp63 (ENSFHEG00000009856) #22	ENSFHEG00000009909	dpt (ENSFHEG00000009930)	ATP1B1 (ENSFHEG00000010122)	nme7 (ENSFHEG00000010170)	zgc:172121 (ENSFHEG00000010218)	BIVM (ENSFHEG00000010250)	si:ch211-201h21.5 (ENSFHEG00000010272)	TMEM131 (ENSFHEG00000010417)	CNGA3 (ENSFHEG00000010460)	ube3a (ENSFHEG00000010525)	ATP10A (ENSFHEG00000010635)	GABRB3 (ENSFHEG00000010670)	GABRA5 (ENSFHEG00000010673)	GABRG3 (ENSFHEG00000000243)	OCA2 (ENSFHEG00000011165)
Sheepshead minnow	MODERN SPECIES	338	ryk (ENSCVAG00000012826)	ENSCVAG00000012851	SLCO2A1 (ENSCVAG00000012862)	rab6ba (ENSCVAG00000012889)	im:7152348 (ENSCVAG00000012904)	cep63 (ENSCVAG00000012919)	amotl2a (ENSCVAG00000012930)	sap130a (ENSCVAG00000012972)	MYO7B (ENSCVAG00000015312)	GPR17 (ENSCVAG00000015360)	INPP5D (ENSCVAG00000015388)	smx5 (ENSCVAG00000015394)	bcl6aa (ENSCVAG00000015422) #18	lpp (ENSCVAG00000015487) #20	tprg1 (ENSCVAG00000015593) #21	tp63 (ENSCVAG00000015683) #22	ENSCVAG00000015711
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b	ENSGT00940000154975
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
NAME_6	ANCESTRAL SPECIES	15	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m.h	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Sailfin molly	MODERN SPECIES	1415																tp63 (ENSPLAG00000007307) #22	zbtb11 (ENSPLAG00000007331)	dpt (ENSPLAG00000007342)	ATP1B1 (ENSPLAG00000007350)	nme7 (ENSPLAG00000007360)	zgc:172121 (ENSPLAG00000007377)
Amazon molly	MODERN SPECIES	529	ENSPFOG00000004023	ryk (ENSPFOG00000003881)	SLCO2A1 (ENSPFOG00000003801)	rab6ba (ENSPFOG00000003742)	im:7152348 (ENSPFOG00000003736)	cep63 (ENSPFOG00000003641)	amotl2a (ENSPFOG00000003541)	sap130a (ENSPFOG00000003244)	ENSPFOG00000002019	GPR17 (ENSPFOG00000020959)	INPP5D (ENSPFOG00000021881)	smx5 (ENSPFOG00000001621)	bcl6aa (ENSPFOG00000001561) #18	lpp (ENSPFOG00000001466) #20	tprg1 (ENSPFOG00000001285) #21	tp63 (ENSPFOG00000000910) #22	ENSPFOG00000000687	dpt (ENSPFOG00000000620)	ATP1B1 (ENSPFOG00000000553)	nme7 (ENSPFOG00000000431)	zgc:172121 (ENSPFOG00000000396)	BIVM (ENSPFOG00000000352)	si:ch211-201h21.5 (ENSPFOG00000000336)	TMEM131 (ENSPFOG00000000186)	CNGA3 (ENSPFOG00000000150)	ube3a (ENSPFOG00000000124)
Guppy	MODERN SPECIES	456	ryk (ENSPREG00000015371)	SLCO2A1 (ENSPREG00000015394)	rab6ba (ENSPREG00000015480)	im:7152348 (ENSPREG00000015914)	cep63 (ENSPREG00000015922)	amotl2a (ENSPREG00000015945)	ENSPREG00000015963	sap130a (ENSPREG00000015981)	ENSPREG00000016073	GPR17 (ENSPREG00000016357)	INPP5D (ENSPREG00000016395)	smx5 (ENSPREG00000016534)	bcl6aa (ENSPREG00000016542) #18	lpp (ENSPREG00000016583) #20	tprg1 (ENSPREG00000016606) #21	tp63 (ENSPREG00000016639) #22	ENSPREG00000016663	dpt (ENSPREG00000016712)	ATP1B1 (ENSPREG00000016726)	nme7 (ENSPREG00000016758)	zgc:172121 (ENSPREG00000016924)	BIVM (ENSPREG00000016951)	si:ch211-201h21.5 (ENSPREG00000016966)	TMEM131 (ENSPREG00000016983)	CNGA3 (ENSPREG00000017037)	ube3a (ENSPREG00000017057)	ATP10A (ENSPREG00000017091)	GABRB3 (ENSPREG00000017132)	GABRA5 (ENSPREG00000017152)	GABRG3 (ENSPREG00000017169)	OCA2 (ENSPREG00000017194)
Platyfish	MODERN SPECIES	23	ENSXMAG00000021359	ryk (ENSXMAG00000022772)	SLCO2A1 (ENSXMAG00000016647)	rab6ba (ENSXMAG00000016638)	im:7152348 (ENSXMAG00000019938)	cep63 (ENSXMAG00000016618)	amotl2a (ENSXMAG00000016605)	sap130a (ENSXMAG00000016556)	ENSXMAG00000016485	GPR17 (ENSXMAG00000020115)	INPP5D (ENSXMAG00000016471)	smx5 (ENSXMAG00000028018)	bcl6aa (ENSXMAG00000016456) #18	lpp (ENSXMAG00000026661) #20	tprg1 (ENSXMAG00000024347) #21	tp63 (ENSXMAG00000016425) #22	zbtb11 (ENSXMAG00000016418)	dpt (ENSXMAG00000016415)	ENSXMAG00000022152	nme7 (ENSXMAG00000016394)	zgc:172121 (ENSXMAG00000016387)	BIVM (ENSXMAG00000016378)	si:ch211-201h21.5 (ENSXMAG00000016370)	TMEM131 (ENSXMAG00000016339)	CNGA3 (ENSXMAG00000016327)	ube3a (ENSXMAG00000016297)	ATP10A (ENSXMAG00000016224)	GABRB3 (ENSXMAG00000027240)	GABRA5 (ENSXMAG00000016186)	GABRG3 (ENSXMAG00000010347)	OCA2 (ENSXMAG00000016171)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000161659	ENSGT00940000159258.d	ENSGT00940000165680.A	ENSGT00390000013841	ENSGT00950000183110.b.a.c	ENSGT00940000160036	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00940000161659	ENSGT00940000159258.d	ENSGT00940000165680.A	ENSGT00390000013841	ENSGT00950000183110.b.a.c	ENSGT00940000160036	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b	ENSGT00940000154975
Indian medaka	MODERN SPECIES	13	PIP5K1C (ENSOMEG00000002623)	ENSOMEG00000002677	POLR2E (ENSOMEG00000002709)	ARHGAP45 (ENSOMEG00000002732)	tjp3 (ENSOMEG00000000054)	ENSOMEG00000002768	amotl2a (ENSOMEG00000002779)	sap130a (ENSOMEG00000002807)	ENSOMEG00000002849	GPR17 (ENSOMEG00000000061)	INPP5D (ENSOMEG00000002876)	smx5 (ENSOMEG00000002892)	bcl6aa (ENSOMEG00000002918) #18	lpp (ENSOMEG00000002950) #20	tprg1 (ENSOMEG00000002969) #21	tp63 (ENSOMEG00000002996) #22	zbtb11 (ENSOMEG00000003031)	dpt (ENSOMEG00000003058)	ATP1B1 (ENSOMEG00000003241)	nme7 (ENSOMEG00000003291)	zgc:172121 (ENSOMEG00000003324)	BIVM (ENSOMEG00000003358)	TMEM131 (ENSOMEG00000003442)	CNGA3 (ENSOMEG00000003494)	ube3a (ENSOMEG00000003524)	ATP10A (ENSOMEG00000003604)	GABRB3 (ENSOMEG00000000649)	GABRA5 (ENSOMEG00000003697)	GABRG3 (ENSOMEG00000003739)	OCA2 (ENSOMEG00000003871)	HERC2 (ENSOMEG00000003969)
Javanese ricefish	MODERN SPECIES	18	marchf2 (ENSOJAG00000011638)	ENSOJAG00000011713	PIP5K1C (ENSOJAG00000011858)	ENSOJAG00000012200	POLR2E (ENSOJAG00000012258)	ARHGAP45 (ENSOJAG00000012312)	tjp3 (ENSOJAG00000000075)	amotl2a (ENSOJAG00000000111)	sap130a (ENSOJAG00000000219)	GPR17 (ENSOJAG00000000598)	INPP5D (ENSOJAG00000000617)	smx5 (ENSOJAG00000000656)	bcl6aa (ENSOJAG00000000663) #18	lpp (ENSOJAG00000000677) #20	tprg1 (ENSOJAG00000000690) #21	tp63 (ENSOJAG00000000722) #22	dpt (ENSOJAG00000000754)	ATP1B1 (ENSOJAG00000000760)	nme7 (ENSOJAG00000000826)	zgc:172121 (ENSOJAG00000000916)	BIVM (ENSOJAG00000000926)	CNGA3 (ENSOJAG00000001045)	ube3a (ENSOJAG00000001085)	ATP10A (ENSOJAG00000001180)	GABRB3 (ENSOJAG00000001281)	GABRA5 (ENSOJAG00000001471)	GABRG3 (ENSOJAG00000001502)	OCA2 (ENSOJAG00000001674)	nipa1 (ENSOJAG00000004419)	nipa2 (ENSOJAG00000004455)	cyfip1 (ENSOJAG00000004536)
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00940000161659	ENSGT00940000159258.d	ENSGT00940000165680.A	ENSGT00390000013841	ENSGT00950000183110.b.a.c	ENSGT00940000160036	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895.y	ENSGT00940000154713.A.c.a	ENSGT00940000154713.A.d.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Japanese Medaka HdrR	MODERN SPECIES	18	rab11ba (ENSORLG00000015307)	PIP5K1C (ENSORLG00000015327)	ENSORLG00000015339	POLR2E (ENSORLG00000015346)	ARHGAP45 (ENSORLG00000015393)	tjp3 (ENSORLG00000015436)	amotl2a (ENSORLG00000015457)	sap130a (ENSORLG00000015499)	ENSORLG00000015554	GPR17 (ENSORLG00000015572)	INPP5D (ENSORLG00000015584)	smx5 (ENSORLG00000029858)	bcl6aa (ENSORLG00000015589) #18	lpp (ENSORLG00000015602) #20	tprg1 (ENSORLG00000015610) #21	tp63 (ENSORLG00000015665) #22	zbtb11 (ENSORLG00000015676)	dpt (ENSORLG00000028799)	ENSORLG00000028494	nme7 (ENSORLG00000015702)	zgc:172121 (ENSORLG00000015709)	BIVM (ENSORLG00000015711)	TMEM131 (ENSORLG00000015740)	CNGA3 (ENSORLG00000015748)	ube3a (ENSORLG00000015759)	ATP10A (ENSORLG00000015800)	GABRB3 (ENSORLG00000015836)	GABRA5 (ENSORLG00000015867)	GABRG3 (ENSORLG00000029938)	oca2 (ENSORLG00000015893)	HERC2 (ENSORLG00000015913)
Chinese medaka	MODERN SPECIES	95	scamp4 (ENSOSIG00000018305)	si:ch211-129c21.1 (ENSOSIG00000018282)	fsd1 (ENSOSIG00000018201)	ENSOSIG00000018188	ENSOSIG00000018181	marchf2 (ENSOSIG00000018172)	rab11ba (ENSOSIG00000018167)	ARHGAP45 (ENSOSIG00000017940)	tjp3 (ENSOSIG00000017907)	amotl2a (ENSOSIG00000017883)	sap130a (ENSOSIG00000017881)	GPR17 (ENSOSIG00000017791)	ENSOSIG00000017072	lpp (ENSOSIG00000017031) #20	tprg1 (ENSOSIG00000017027) #21	tp63 (ENSOSIG00000016987) #22	zbtb11 (ENSOSIG00000016977)	dpt (ENSOSIG00000016976)	ATP1B1 (ENSOSIG00000016974)	ENSOSIG00000016971	nme7 (ENSOSIG00000016346)	zgc:172121 (ENSOSIG00000016323)	BIVM (ENSOSIG00000016317)	TMEM131 (ENSOSIG00000015969)	CNGA3 (ENSOSIG00000015947)	ube3a (ENSOSIG00000014433)	ATP10A (ENSOSIG00000014383)	GABRB3 (ENSOSIG00000014219)	ENSOSIG00000014215	GABRA5 (ENSOSIG00000014213)	GABRG3 (ENSOSIG00000013730)
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Cichlidae	ANCESTRAL SPECIES	36	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00910000148238	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Lyretail cichlid	MODERN SPECIES	307	SNED1 (ENSNBRG00000013777)	ryk (ENSNBRG00000013718)	SLCO2A1 (ENSNBRG00000013696)	rab6ba (ENSNBRG00000013673)	im:7152348 (ENSNBRG00000013666)	ENSNBRG00000013655	amotl2a (ENSNBRG00000013643)	sap130a (ENSNBRG00000013596)	ENSNBRG00000013153	GPR17 (ENSNBRG00000013055)	INPP5D (ENSNBRG00000012987)	smx5 (ENSNBRG00000012904)	bcl6aa (ENSNBRG00000012880) #18	lpp (ENSNBRG00000012846) #20	tprg1 (ENSNBRG00000012761) #21	tp63 (ENSNBRG00000012703) #22	ENSNBRG00000012678	ENSNBRG00000012666	dpt (ENSNBRG00000012642)	ATP1B1 (ENSNBRG00000012617)	nme7 (ENSNBRG00000012586)	zgc:172121 (ENSNBRG00000012573)	ENSNBRG00000012521	si:ch211-201h21.5 (ENSNBRG00000012500)	TMEM131 (ENSNBRG00000012482)	CNGA3 (ENSNBRG00000012465)	ube3a (ENSNBRG00000012434)	ATP10A (ENSNBRG00000012378)	ENSNBRG00000012355	GABRA5 (ENSNBRG00000012332)	GABRG3 (ENSNBRG00000012277)
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Burton s mouthbrooder	MODERN SPECIES	301	SNED1 (ENSHBUG00000012747)	ryk (ENSHBUG00000012858)	SLCO2A1 (ENSHBUG00000012876)	rab6ba (ENSHBUG00000012905)	im:7152348 (ENSHBUG00000012915)	cep63 (ENSHBUG00000012924)	amotl2a (ENSHBUG00000000895)	sap130a (ENSHBUG00000013006)	ENSHBUG00000013368	GPR17 (ENSHBUG00000013384)	INPP5D (ENSHBUG00000013397)	smx5 (ENSHBUG00000000394)	bcl6aa (ENSHBUG00000013427) #18	lpp (ENSHBUG00000013448) #20	tprg1 (ENSHBUG00000013459) #21	tp63 (ENSHBUG00000013508) #22	zbtb11 (ENSHBUG00000013524)	dpt (ENSHBUG00000000779)	ATP1B1 (ENSHBUG00000013688)	nme7 (ENSHBUG00000013730)	zgc:172121 (ENSHBUG00000001071)	BIVM (ENSHBUG00000013770)	si:ch211-201h21.5 (ENSHBUG00000013789)	TMEM131 (ENSHBUG00000014737)	CNGA3 (ENSHBUG00000014779)	ube3a (ENSHBUG00000014796)	ATP10A (ENSHBUG00000014907)	GABRB3 (ENSHBUG00000014943)	GABRA5 (ENSHBUG00000015029)	GABRG3 (ENSHBUG00000015077)	OCA2 (ENSHBUG00000015094)
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
P. nyererei	MODERN SPECIES	318	SNED1 (ENSPNYG00000020123)	ryk (ENSPNYG00000020049)	SLCO2A1 (ENSPNYG00000019991)	rab6ba (ENSPNYG00000019963)	im:7152348 (ENSPNYG00000019948)	cep63 (ENSPNYG00000019933)	amotl2a (ENSPNYG00000019921)	sap130a (ENSPNYG00000019866)	ENSPNYG00000019646	GPR17 (ENSPNYG00000019617)	INPP5D (ENSPNYG00000019357)	smx5 (ENSPNYG00000019298)	bcl6aa (ENSPNYG00000019267) #18	lpp (ENSPNYG00000019245) #20	tprg1 (ENSPNYG00000019230) #21	tp63 (ENSPNYG00000019171) #22	ENSPNYG00000019146	ENSPNYG00000019136	dpt (ENSPNYG00000019116)	ATP1B1 (ENSPNYG00000019105)	nme7 (ENSPNYG00000018965)	zgc:172121 (ENSPNYG00000018926)	BIVM (ENSPNYG00000018896)	si:ch211-201h21.5 (ENSPNYG00000018878)	TMEM131 (ENSPNYG00000018471)	CNGA3 (ENSPNYG00000018402)	ube3a (ENSPNYG00000018338)	ATP10A (ENSPNYG00000018279)	GABRB3 (ENSPNYG00000018243)	GABRA5 (ENSPNYG00000018217)	GABRG3 (ENSPNYG00000018192)
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Eastern happy	MODERN SPECIES	14	SLCO2A1 (ENSACLG00000025165)	rab6ba (ENSACLG00000025138)	im:7152348 (ENSACLG00000025122)	cep63 (ENSACLG00000025092)	amotl2a (ENSACLG00000025064)	sap130a (ENSACLG00000024963)	ENSACLG00000024879	GPR17 (ENSACLG00000024872)	INPP5D (ENSACLG00000024736)	smx5 (ENSACLG00000024717)	bcl6aa (ENSACLG00000024631) #18	lpp (ENSACLG00000024600) #20	tprg1 (ENSACLG00000024576) #21	ENSACLG00000024560	ENSACLG00000024556	tp63 (ENSACLG00000024498) #22	zbtb11 (ENSACLG00000024481)	dpt (ENSACLG00000024467)	atp1b1b (ENSACLG00000024438)	nme7 (ENSACLG00000024393)	zgc:172121 (ENSACLG00000024325)	BIVM (ENSACLG00000024318)	si:ch211-201h21.5 (ENSACLG00000024313)	TMEM131 (ENSACLG00000024288)	CNGA3 (ENSACLG00000024274)	ube3a (ENSACLG00000024258)	ATP10A (ENSACLG00000024242)	ENSACLG00000024240	GABRB3 (ENSACLG00000024236)	GABRA5 (ENSACLG00000024232)	GABRG3 (ENSACLG00000024228)
Zebra mbuna	DUPLICATION
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	859																tp63 (ENSMZEG00005004844) #22
Zebra mbuna	MODERN SPECIES	1105	SNED1 (ENSMZEG00005009089)	ryk (ENSMZEG00005009042)	SLCO2A1 (ENSMZEG00005009022)	rab6ba (ENSMZEG00005008991)	im:7152348 (ENSMZEG00005008979)	cep63 (ENSMZEG00005008966)	amotl2a (ENSMZEG00005008956)	sap130a (ENSMZEG00005008912)	ENSMZEG00005008773	GPR17 (ENSMZEG00005008737)	INPP5D (ENSMZEG00005008710)	smx5 (ENSMZEG00005008688)	bcl6aa (ENSMZEG00005008634) #18	lpp (ENSMZEG00005008596) #20	tprg1 (ENSMZEG00005008561) #21	tp63 (ENSMZEG00005008535) #22	tp63 (ENSMZEG00005008516) #22	ENSMZEG00005008500	ENSMZEG00005008492	ENSMZEG00005008484	dpt (ENSMZEG00005008462)	ATP1B1 (ENSMZEG00005008447)	nme7 (ENSMZEG00005008419)	zgc:172121 (ENSMZEG00005008403)	BIVM (ENSMZEG00005008383)	si:ch211-201h21.5 (ENSMZEG00005008334)	TMEM131 (ENSMZEG00005008057)	CNGA3 (ENSMZEG00005008008)	ube3a (ENSMZEG00005007977)	ATP10A (ENSMZEG00005007941)	GABRB3 (ENSMZEG00005007922)
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1105	ryk (ENSMZEG00005009042)	SLCO2A1 (ENSMZEG00005009022)	rab6ba (ENSMZEG00005008991)	im:7152348 (ENSMZEG00005008979)	cep63 (ENSMZEG00005008966)	amotl2a (ENSMZEG00005008956)	sap130a (ENSMZEG00005008912)	ENSMZEG00005008773	GPR17 (ENSMZEG00005008737)	INPP5D (ENSMZEG00005008710)	smx5 (ENSMZEG00005008688)	bcl6aa (ENSMZEG00005008634) #18	lpp (ENSMZEG00005008596) #20	tprg1 (ENSMZEG00005008561) #21	tp63 (ENSMZEG00005008535) #22	tp63 (ENSMZEG00005008516) #22	ENSMZEG00005008500	ENSMZEG00005008492	ENSMZEG00005008484	dpt (ENSMZEG00005008462)	ATP1B1 (ENSMZEG00005008447)	nme7 (ENSMZEG00005008419)	zgc:172121 (ENSMZEG00005008403)	BIVM (ENSMZEG00005008383)	si:ch211-201h21.5 (ENSMZEG00005008334)	TMEM131 (ENSMZEG00005008057)	CNGA3 (ENSMZEG00005008008)	ube3a (ENSMZEG00005007977)	ATP10A (ENSMZEG00005007941)	GABRB3 (ENSMZEG00005007922)	GABRA5 (ENSMZEG00005007892)
Zebra mbuna	MODERN SPECIES	1069																tp63 (ENSMZEG00005003250) #22	ENSMZEG00005003209
Nile tilapia	MODERN SPECIES	14	ryk (ENSONIG00000040167)	SLCO2A1 (ENSONIG00000019304)	rab6ba (ENSONIG00000019309)	im:7152348 (ENSONIG00000041034)	cep63 (ENSONIG00000019310)	ENSONIG00000040735	amotl2a (ENSONIG00000019311)	sap130a (ENSONIG00000019312)	ENSONIG00000019314	GPR17 (ENSONIG00000021192)	INPP5D (ENSONIG00000019319)	smx5 (ENSONIG00000019321)	bcl6aa (ENSONIG00000019322) #18	lpp (ENSONIG00000019323) #20	tprg1 (ENSONIG00000019324) #21	tp63 (ENSONIG00000019325) #22	zbtb11 (ENSONIG00000019328)	nme7 (ENSONIG00000019333)	ATP1B1 (ENSONIG00000019331)	zgc:172121 (ENSONIG00000019336)	BIVM (ENSONIG00000019337)	si:ch211-201h21.5 (ENSONIG00000019338)	TMEM131 (ENSONIG00000019341)	CNGA3 (ENSONIG00000019344)	ube3a (ENSONIG00000019346)	ATP10A (ENSONIG00000019347)	GABRB3 (ENSONIG00000019350)	GABRA5 (ENSONIG00000019352)	GABRG3 (ENSONIG00000004903)	OCA2 (ENSONIG00000004896)	HERC2 (ENSONIG00000004888)
Midas cichlid	MODERN SPECIES	366	ryk (ENSACIG00000006980)	SLCO2A1 (ENSACIG00000007032)	rab6ba (ENSACIG00000007154)	im:7152348 (ENSACIG00000007181)	cep63 (ENSACIG00000007198)	amotl2a (ENSACIG00000007230)	sap130a (ENSACIG00000007254)	MYO7B (ENSACIG00000007542)	ENSACIG00000007661	GPR17 (ENSACIG00000007711)	INPP5D (ENSACIG00000007727)	smx5 (ENSACIG00000007795)	bcl6aa (ENSACIG00000007844) #18	lpp (ENSACIG00000007870) #20	tprg1 (ENSACIG00000007899) #21	tp63 (ENSACIG00000007960) #22	ENSACIG00000007985	ENSACIG00000007995	dpt (ENSACIG00000008054)	ATP1B1 (ENSACIG00000008087)	nme7 (ENSACIG00000008104)	zgc:172121 (ENSACIG00000008134)	BIVM (ENSACIG00000008161)	si:ch211-201h21.5 (ENSACIG00000008189)	TMEM131 (ENSACIG00000008241)
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000170731	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.t	ENSGT00390000010760.f	ENSGT01030000234579.C.m	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b
Clown anemonefish	MODERN SPECIES	2229																tp63 (ENSAOCG00000023955) #22	ENSAOCG00000023960	ENSAOCG00000023965	dpt (ENSAOCG00000023974)	ATP1B1 (ENSAOCG00000023987)	nme7 (ENSAOCG00000024004)	zgc:172121 (ENSAOCG00000024018)	BIVM (ENSAOCG00000024029)	si:ch211-201h21.5 (ENSAOCG00000024058)
Orange clownfish	MODERN SPECIES	11	SNED1 (ENSAPEG00000021096)	ryk (ENSAPEG00000021003)	SLCO2A1 (ENSAPEG00000020924)	rab6ba (ENSAPEG00000020892)	im:7152348 (ENSAPEG00000020873)	cep63 (ENSAPEG00000020847)	amotl2a (ENSAPEG00000020830)	sap130a (ENSAPEG00000020745)	ENSAPEG00000020604	GPR17 (ENSAPEG00000020587)	INPP5D (ENSAPEG00000020416)	smx5 (ENSAPEG00000020375)	bcl6aa (ENSAPEG00000020369) #18	lpp (ENSAPEG00000020353) #20	tprg1 (ENSAPEG00000020253) #21	tp63 (ENSAPEG00000020207) #22	ENSAPEG00000020191	dpt (ENSAPEG00000020176)	ATP1B1 (ENSAPEG00000020152)	nme7 (ENSAPEG00000020138)	zgc:172121 (ENSAPEG00000020113)	BIVM (ENSAPEG00000020084)	si:ch211-201h21.5 (ENSAPEG00000020059)	TMEM131 (ENSAPEG00000019535)	CNGA3 (ENSAPEG00000019486)	ube3a (ENSAPEG00000019470)	ATP10A (ENSAPEG00000019418)	GABRB3 (ENSAPEG00000019394)	GABRA5 (ENSAPEG00000019071)	GABRG3 (ENSAPEG00000019002)	OCA2 (ENSAPEG00000018748)
Spiny chromis	MODERN SPECIES	376								sap130a (ENSAPOG00000019256)	ENSAPOG00000019103	GPR17 (ENSAPOG00000017981)	INPP5D (ENSAPOG00000017974)	smx5 (ENSAPOG00000017967)	bcl6aa (ENSAPOG00000017944) #18	lpp (ENSAPOG00000017930) #20	tprg1 (ENSAPOG00000017925) #21	tp63 (ENSAPOG00000017901) #22
Bicolor damselfish	MODERN SPECIES	1107															ENSSPAG00000012586 #21	tp63 (ENSSPAG00000012597) #22	ENSSPAG00000012670	dpt (ENSSPAG00000012688)	ATP1B1 (ENSSPAG00000012706)	nme7 (ENSSPAG00000012718)	zgc:172121 (ENSSPAG00000012760)	BIVM (ENSSPAG00000012774)	si:ch211-201h21.5 (ENSSPAG00000012802)	TMEM131 (ENSSPAG00000012836)	CNGA3 (ENSSPAG00000013056)	ube3a (ENSSPAG00000013079)
Protacanthopterygii	ANCESTRAL SPECIES	84	ENSGT00940000160730	ENSGT00940000155119	ENSGT01080000257336.a.c.b	ENSGT00940000159656.a.a	ENSGT00730000112922	ENSGT00940000153190.B.b	ENSGT00940000156577.a	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a	ENSGT00390000016597	ENSGT00940000156311.b.a #18	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00900000141090.s.b	ENSGT00950000186445	ENSGT00900000141090.s.a	ENSGT00390000010760.f	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g	ENSGT00940000155050.a	ENSGT00940000157895	ENSGT00940000154713.A.c.a	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a
Northern pike	MODERN SPECIES	7	SLCO2A1 (ENSELUG00000001219)	rab6ba (ENSELUG00000001257)	ENSELUG00000007254	im:7152348 (ENSELUG00000007267)	cep63 (ENSELUG00000007285)	amotl2a (ENSELUG00000007310)	ENSELUG00000007332	sap130a (ENSELUG00000007391)	MYO7B (ENSELUG00000007930)	GPR17 (ENSELUG00000008154)	INPP5D (ENSELUG00000008208)	si:ch73-14h10.2 (ENSELUG00000008241)	bcl6aa (ENSELUG00000008285) #18	ENSELUG00000033731	lpp (ENSELUG00000008358) #20	tp63 (ENSELUG00000008470) #22	zbtb11 (ENSELUG00000008519)	dpt (ENSELUG00000008580)	ATP1B1 (ENSELUG00000008597)	nme7 (ENSELUG00000008663)	zgc:172121 (ENSELUG00000008699)	BIVM (ENSELUG00000008715)	si:ch211-201h21.5 (ENSELUG00000008734)	TMEM131 (ENSELUG00000009013)	CNGA3 (ENSELUG00000009152)	CNGA3 (ENSELUG00000030819)	ube3a (ENSELUG00000009232)	ATP10A (ENSELUG00000009308)	GABRB3 (ENSELUG00000009339)	GABRA5 (ENSELUG00000009373)	GABRG3 (ENSELUG00000009399)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	692															ENSGT00390000001652.f.b.e #21	ENSGT00950000183153.c.b.a.a.i.a #22	ENSGT00900000141090.s.b	ENSGT00950000186445	ENSGT00900000141090.s.a	ENSGT00390000010760.f	ENSGT00940000158946	ENSGT00510000049619	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g.l	ENSGT00910000148238
Huchen	MODERN SPECIES	7582																tp63 (ENSHHUG00000005670) #22
Salmoninae_a	ANCESTRAL SPECIES	135													ENSGT01080000257714.a	ENSGT00940000156022.b.i.a.b #20	ENSGT00390000001652.f.b.e #21	ENSGT00950000183153.c.b.a.a.i.a #22	ENSGT00900000141090.s.b	ENSGT00950000186445	ENSGT00900000141090.s.a.a	ENSGT00390000010760.f	ENSGT00940000158946	ENSGT00510000049619	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g.l	ENSGT00940000155050.a.g	ENSGT00940000157895.x	ENSGT00940000154713.A.c.a	ENSGT00940000159067	ENSGT00940000155651	ENSGT00500000044831.a.b.g.a
Oncorhynchus	ANCESTRAL SPECIES	383																ENSGT00950000183153.c.b.a.a.i.a #22	ENSGT00900000141090.s.b	ENSGT00950000186445
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000153241.B.c	ENSGT00940000156474.a.b.c.b	ENSGT00940000158597	ENSGT00940000164964.a.b	ENSGT00940000160730.c.a	ENSGT00940000155119.g.a	ENSGT01080000257336.a.c.b.c.a	ENSGT00940000159656.a.a.b.b	ENSGT00940000153190.B.b	ENSGT00940000156577.a.d	ENSGT00940000156202.a.g.b	ENSGT00390000016597	ENSGT00940000156311.b.a.a #18	ENSGT00940000156022.b.i.a.b #20	ENSGT00390000001652.f.b.e #21	ENSGT00950000183153.c.b.a.a.i.a #22	ENSGT00900000141090.s.a.a	ENSGT00390000010760.f	ENSGT01030000234579.C.t.a.a	ENSGT00940000158946	ENSGT00510000049619	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000158737.g.l	ENSGT00940000155050.a.g	ENSGT00940000157895.w.a	ENSGT00940000154713.A.c.a	ENSGT00940000159067	ENSGT00940000155651.c	ENSGT00500000044831.a.b.g.a	ENSGT00940000155962
Coho salmon	MODERN SPECIES	24	ENSOKIG00005029190	ryk (ENSOKIG00005028287)	SLCO2A1 (ENSOKIG00005028087)	ENSOKIG00005028052	ENSOKIG00005028034	ENSOKIG00005028010	rab6ba (ENSOKIG00005028000)	cep63 (ENSOKIG00005027981)	amotl2a (ENSOKIG00005027947)	ENSOKIG00005027688	smx5 (ENSOKIG00005027571)	bcl6aa (ENSOKIG00005027538) #18	lpp (ENSOKIG00005027460) #20	tprg1 (ENSOKIG00005018936) #21	ENSOKIG00005018912	tp63 (ENSOKIG00005017389) #22	zbtb11 (ENSOKIG00005016694)	dpt (ENSOKIG00005016658)	ATP1B1 (ENSOKIG00005016648)	nme7 (ENSOKIG00005016027)	zgc:172121 (ENSOKIG00005015966)	si:ch211-201h21.5 (ENSOKIG00005015953)	TMEM131 (ENSOKIG00005015534)	CNGA3 (ENSOKIG00005015475)	ube3a (ENSOKIG00005014593)	ENSOKIG00005014536	ATP10A (ENSOKIG00005013829)	GABRB3 (ENSOKIG00005013753)	nipa1 (ENSOKIG00005013739)	nipa2 (ENSOKIG00005013716)	cyfip1 (ENSOKIG00005013096)
Rainbow trout	MODERN SPECIES		ENSOMYG00000001620	smx5 (ENSOMYG00000074463)	ENSOMYG00000060440	bcl6aa (ENSOMYG00000001486) #18	ENSOMYG00000071902	ENSOMYG00000068867	ENSOMYG00000054022	ENSOMYG00000059166	lpp (ENSOMYG00000050394) #20	ENSOMYG00000064702	ENSOMYG00000003292	ENSOMYG00000000350	ENSOMYG00000001186	ENSOMYG00000077295	ENSOMYG00000001189	ENSOMYG00000000561 #22	ENSOMYG00000000583	ENSOMYG00000000588	ENSOMYG00000000412	dpt (ENSOMYG00000077750)	ENSOMYG00000000460	nme7 (ENSOMYG00000000475)	zgc:172121 (ENSOMYG00000001447)	ENSOMYG00000001467	si:ch211-201h21.5 (ENSOMYG00000001502)	ENSOMYG00000067656	ENSOMYG00000000403	ube3a (ENSOMYG00000001185)	ENSOMYG00000001424	GABRB3 (ENSOMYG00000001367)	nipa1 (ENSOMYG00000001322)
Salmo	ANCESTRAL SPECIES	9	ENSGT00940000153241.B.c	ENSGT00940000156474.a.b.c.b	ENSGT00940000158597	ENSGT00940000164964.a.b	ENSGT00940000160730.c.b	ENSGT00940000155119.g.a	ENSGT01080000257336.a.c.b.c.a	ENSGT00940000159656.a.a.b.a.b	ENSGT00940000153190.B.b	ENSGT00940000156577.a.d	ENSGT00940000156202.a.g.b	ENSGT00390000016597	ENSGT00940000156311.b.a.c #18	ENSGT00940000156022.b.i.a.b #20	ENSGT00390000001652.f.b.e #21	ENSGT00950000183153.c.b.a.a.i.a #22	ENSGT00900000141090.s.b	ENSGT00390000010760.f	ENSGT01030000234579.C.v	ENSGT00940000158946	ENSGT00510000049619	ENSGT00940000166460	ENSGT00530000063614.a.a.gb	ENSGT00940000158737.g.l	ENSGT00940000155050.a.g	ENSGT00940000157895.x	ENSGT00940000154713.A.c.a	ENSGT00940000159067	ENSGT00940000155651.e	ENSGT00500000044831.a.b.g.a	ENSGT00940000155962
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000009091	ENSSSAG00000089681	ENSSSAG00000049730	ryk (ENSSSAG00000108742)	ENSSSAG00000050903	rab6ba (ENSSSAG00000053799)	ENSSSAG00000092567	cep63 (ENSSSAG00000047113)	amotl2a (ENSSSAG00000057392)	ENSSSAG00000047169	smx5 (ENSSSAG00000047708)	bcl6aa (ENSSSAG00000098613) #18	lpp (ENSSSAG00000111702) #20	ENSSSAG00000098890	tprg1 (ENSSSAG00000116062) #21	tp63 (ENSSSAG00000015551) #22	zbtb11 (ENSSSAG00000019890)	ENSSSAG00000019551	dpt (ENSSSAG00000095344)	ENSSSAG00000098185	nme7 (ENSSSAG00000085260)	zgc:172121 (ENSSSAG00000015474)	ENSSSAG00000115329	si:ch211-201h21.5 (ENSSSAG00000015497)	ENSSSAG00000108972	ENSSSAG00000102808	ENSSSAG00000049199	ube3a (ENSSSAG00000036224)	ENSSSAG00000120810	GABRB3 (ENSSSAG00000095267)	nipa2 (ENSSSAG00000024860)
River trout	MODERN SPECIES	8	ryk (ENSSTUG00000008378)	SLCO2A1 (ENSSTUG00000008296)	rab6ba (ENSSTUG00000008283)	cep63 (ENSSTUG00000008265)	amotl2a (ENSSTUG00000008261)	ENSSTUG00000007849	si:ch73-14h10.2 (ENSSTUG00000007801)	bcl6aa (ENSSTUG00000007774) #18	ENSSTUG00000007763	ENSSTUG00000007758	lpp (ENSSTUG00000007717) #20	ENSSTUG00000007706	ENSSTUG00000007701	tprg1 (ENSSTUG00000007680) #21	ENSSTUG00000007674	tp63 (ENSSTUG00000006050) #22	zbtb11 (ENSSTUG00000005996)	dpt (ENSSTUG00000005988)	ATP1B1 (ENSSTUG00000005977)	nme7 (ENSSTUG00000005919)	zgc:172121 (ENSSTUG00000005903)	si:ch211-201h21.5 (ENSSTUG00000005893)	zgc:172121 (ENSSTUG00000005864)	TMEM131 (ENSSTUG00000002978)	CNGA3 (ENSSTUG00000002809)	ube3a (ENSSTUG00000002316)	ATP10A (ENSSTUG00000047133)	GABRB3 (ENSSTUG00000047073)	nipa1 (ENSSTUG00000047063)	nipa2 (ENSSTUG00000047057)	ENSSTUG00000047050
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.i.b.a #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.i.b.a #22
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT01030000234527.B	ENSGT00940000156474.a.b.c.a	ENSGT00940000157773	ENSGT00940000156970.c.b	ENSGT00940000160730.d	ENSGT00940000155119.g.b	ENSGT01080000257336.a.c.b.c.b	ENSGT00940000159656.a.a.a	ENSGT00940000156577.a.c	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a.g.a	ENSGT00940000156311.b.a.b #18	ENSGT00390000001652.f.b.f #21	ENSGT00950000183153.c.b.a.a.i.b.a #22	ENSGT00900000141090.s.a.b	ENSGT01030000234579.C.t.a.b	ENSGT00940000166950	ENSGT00960000192080	ENSGT00510000048601.a.k	ENSGT00940000158737.g.k	ENSGT00940000155050.a.h	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b	ENSGT00940000154975	ENSGT00940000155651.d	ENSGT00500000044831.a.b.g.b	ENSGT00940000158262.l	ENSGT00940000158722.q.a
Oncorhynchus_a	ANCESTRAL SPECIES	63	ENSGT00940000154030.a.a	ENSGT01030000234527.B	ENSGT00940000156474.a.b.c.a	ENSGT00940000157773	ENSGT00940000156970.c.b	ENSGT00940000160730.d	ENSGT00940000155119.g.b	ENSGT01080000257336.a.c.b.c.b	ENSGT00940000159656.a.a.a	ENSGT00940000156577.a.c	ENSGT00440000037733.f	ENSGT00940000157247.a.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000156202.a.g.a	ENSGT00940000156311.b.a.b #18	ENSGT00950000183153.c.b.a.a.i.b.a #22	ENSGT00900000141090.s.a.b	ENSGT01030000234579.C.t.a.b	ENSGT00940000166950	ENSGT00510000048601.a.k	ENSGT00940000158737.g.k	ENSGT00940000155050.a.h	ENSGT00940000156234.a.a	ENSGT00940000155607.mc.a	ENSGT01030000234550.b	ENSGT00940000154975	ENSGT00940000155651.d	ENSGT00500000044831.a.b.g.b	ENSGT00940000158262.l	ENSGT00940000158722.q.a	ENSGT00940000166880
Coho salmon	MODERN SPECIES	4	ENSOKIG00005017115	GPR17 (ENSOKIG00005016921)	ENSOKIG00005016914	ENSOKIG00005016239	bcl6aa (ENSOKIG00005016148) #18	ENSOKIG00005016107	ENSOKIG00005016101	ENSOKIG00005016087	lpp (ENSOKIG00005044994) #20	ENSOKIG00005044986	tprg1 (ENSOKIG00005044977) #21	ENSOKIG00005044974	ENSOKIG00005044954	ENSOKIG00005044945	ENSOKIG00005044927	tp63 (ENSOKIG00005044575) #22	zbtb11 (ENSOKIG00005044536)	ATP1B1 (ENSOKIG00005044526)	ENSOKIG00005044502	BIVM (ENSOKIG00005044457)	ENSOKIG00005044448	CNGA3 (ENSOKIG00005044435)	ENSOKIG00005042404	GABRA5 (ENSOKIG00005042072)	ENSOKIG00005042040	GABRG3 (ENSOKIG00005042003)	OCA2 (ENSOKIG00005040294)	ENSOKIG00005040195	HERC2 (ENSOKIG00005033924)	nipa2 (ENSOKIG00005033580)	cyfip1 (ENSOKIG00005033147)
Chinook salmon	MODERN SPECIES	455																tp63 (ENSOTSG00005041124) #22	ENSOTSG00005041687
Rainbow trout	MODERN SPECIES	26				ENSOMYG00000028224	ENSOMYG00000060712	ENSOMYG00000015886	ENSOMYG00000058839	ENSOMYG00000029617	ENSOMYG00000014737	ENSOMYG00000075662	ENSOMYG00000015848	ENSOMYG00000014872	TPRG1 (ENSOMYG00000076052) #21	ENSOMYG00000055689 #20	ENSOMYG00000066282	ENSOMYG00000005180 #22	ENSOMYG00000067548	ENSOMYG00000002239	ENSOMYG00000002206	ENSOMYG00000002176	ENSOMYG00000002266	ENSOMYG00000056827	ENSOMYG00000002359	ENSOMYG00000049309	GABRA5 (ENSOMYG00000002468)	ENSOMYG00000071632	GABRG3 (ENSOMYG00000014688)	OCA2 (ENSOMYG00000067038)	ENSOMYG00000059925	ENSOMYG00000049746	ENSOMYG00000060324
Huchen	MODERN SPECIES	7865																ENSHHUG00000020765 #22
Salmoninae	ANCESTRAL SPECIES	1700																ENSGT00950000183153.c.b.a.a.i.b.b #22	ENSGT00900000141090.t.tb
Huchen	MODERN SPECIES	8033																ENSHHUG00000023112 #22	ENSHHUG00000023116
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.i.b.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.i.b.b #22
Atlantic salmon	MODERN SPECIES	1	scly (ENSSSAG00000034758)	ENSSSAG00000035267	ENSSSAG00000120025	ryk (ENSSSAG00000049784)	ENSSSAG00000053759	rab6ba (ENSSSAG00000117122)	ENSSSAG00000093020	amotl2a (ENSSSAG00000053868)	sap130a (ENSSSAG00000053903)	ENSSSAG00000054831	ENSSSAG00000085760	ENSSSAG00000052012	bcl6aa (ENSSSAG00000051883) #18	lpp (ENSSSAG00000099194) #20	tprg1 (ENSSSAG00000068066) #21	tp63 (ENSSSAG00000006256) #22	ENSSSAG00000090324	ENSSSAG00000053855	ENSSSAG00000099477	ENSSSAG00000113656	AT233 (ENSSSAG00000053842)	ENSSSAG00000055019	ENSSSAG00000110987	ENSSSAG00000115122	bivm (ENSSSAG00000055006)	ENSSSAG00000054886	ENSSSAG00000048351	ENSSSAG00000116034	ENSSSAG00000093905	ENSSSAG00000092691	ENSSSAG00000055674
River trout	MODERN SPECIES	148																tp63 (ENSSTUG00000031327) #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.i.b.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.i.b.b #22
Chinook salmon	MODERN SPECIES	30						NHS (ENSOTSG00005031476)	ENSOTSG00005031506	CDKL5 (ENSOTSG00005031507)	ENSOTSG00005031657	DPT (ENSOTSG00005031659)	ENSOTSG00005031660	ENSOTSG00005031738	ENSOTSG00005031740	ENSOTSG00005031743 #21	ENSOTSG00005031744	tp63 (ENSOTSG00005031749) #22	ENSOTSG00005031895	ENSOTSG00005031896	zbtb11 (ENSOTSG00005031898)	ENSOTSG00005000112	ENSOTSG00005000147	ENSOTSG00005000261	EPHB3 (ENSOTSG00005001367)	ENSOTSG00005001553	ENSOTSG00005001566	ENSOTSG00005001818	polr2h (ENSOTSG00005001821)	ARMC9 (ENSOTSG00005001827)	b3gnt7 (ENSOTSG00005001832)	ncl (ENSOTSG00005001843)	nppc (ENSOTSG00005001869)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a.j #22
Huchen	MODERN SPECIES	4995																ENSHHUG00000043668 #22
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1462																ENSCMIG00000000585 #22
Elephant shark	MODERN SPECIES	871																ENSCMIG00000003502 #22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.a #22
Hagfish	MODERN SPECIES	669											ENSEBUG00000008060	ENSEBUG00000002855	ENSEBUG00000008366	ENSEBUG00000009163 #21	wrap73 (ENSEBUG00000005763)	ENSEBUG00000004899 #22	ENSEBUG00000015341	sec62 (ENSEBUG00000015304)	ENSEBUG00000007090	rcc2 (ENSEBUG00000016950)	ENSEBUG00000001907	ENSEBUG00000007556	ENSEBUG00000015823
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	194								ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000153497.A	ENSGT00940000160546	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446
Euteleostomi	ANCESTRAL SPECIES	193					ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349	ENSGT00390000012265	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00940000153497.A	ENSGT00940000160546	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374
Sarcopterygii	ANCESTRAL SPECIES	39					ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00940000165571	ENSGT00440000038972	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000165603	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229
Tetrapoda	ANCESTRAL SPECIES	18	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00440000038972	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000165603	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612
Amniota	ANCESTRAL SPECIES	21	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190.b	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612
Sauria	ANCESTRAL SPECIES	19	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612
Lepidosauria	ANCESTRAL SPECIES	34	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.a.b	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000177208	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22
Episquamata	ANCESTRAL SPECIES	16	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.a.b	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00990000205429	ENSGT00390000014309	ENSGT00390000004367	ENSGT00950000182914.a.a.b	ENSGT00940000165186.A	ENSGT00940000165186.C	ENSGT00940000158624	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227
Toxicofera	ANCESTRAL SPECIES	70													ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00390000014309	ENSGT00390000004367	ENSGT00950000182914.a.a.b	ENSGT00940000165186.A	ENSGT00940000165186.C	ENSGT00940000158624.i	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00940000160469
Elapidae	ANCESTRAL SPECIES	63													ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00390000014309	ENSGT00390000004367	ENSGT00950000182914.a.a.b	ENSGT00940000165186.C	ENSGT00940000158624.i	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00940000160469
Elapidae_a	ANCESTRAL SPECIES	150																ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00390000014309	ENSGT00390000004367	ENSGT00950000182914.a.a.b	ENSGT00940000165186.C	ENSGT00940000158624.i	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00940000160469.b
Acanthophiinae	ANCESTRAL SPECIES	141																ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00390000014309	ENSGT00390000004367	ENSGT00950000182914.a.a.b	ENSGT00940000165186.C	ENSGT00940000158624.i	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00940000160469.b
Eastern brown snake	MODERN SPECIES	283																TP73 (ENSPTXG00000016704) ##22	ENSPTXG00000016773	ENSPTXG00000016775	MRPS16 (ENSPTXG00000016776)	SLC45A1 (ENSPTXG00000016777)	ENSPTXG00000016778	CLDN19 (ENSPTXG00000016779)	P3H1 (ENSPTXG00000016780)	C1orf50 (ENSPTXG00000016781)	CDC42 (ENSPTXG00000016783)	WNT4 (ENSPTXG00000016785)	ENSPTXG00000016787
Mainland tiger snake	MODERN SPECIES	1181																TP73 (ENSNSUG00000009141) ##22
Blue-lipped sea krait	MODERN SPECIES	2502																TP73 (ENSLLTG00000006910) ##22	ENSLLTG00000006766	MRPS16 (ENSLLTG00000006720)	ENSLLTG00000006680	SLC45A1 (ENSLLTG00000006636)	ENSLLTG00000006586	CLDN19 (ENSLLTG00000006572)	P3H1 (ENSLLTG00000006531)	C1orf50 (ENSLLTG00000006503)	CDC42 (ENSLLTG00000006481)	WNT4 (ENSLLTG00000006453)
Indian cobra	MODERN SPECIES	9								ENSNNAG00000010231	DRAXIN (ENSNNAG00000010282)	MAD2L2 (ENSNNAG00000010328)	ENSNNAG00000010464	FBXO2 (ENSNNAG00000010505)	MTHFR (ENSNNAG00000010538)	TPRG1L (ENSNNAG00000010567) ##21	WRAP73 (ENSNNAG00000010592)	TP73 (ENSNNAG00000010689) ##22	ENSNNAG00000010782	ENSNNAG00000010824	P3H1 (ENSNNAG00000010903)	C1orf50 (ENSNNAG00000011399)	CDC42 (ENSNNAG00000011430)	WNT4 (ENSNNAG00000011485)	ENSNNAG00000011500	DHRS3 (ENSNNAG00000011527)	ENSNNAG00000011629	ENSNNAG00000011681	LACTBL1 (ENSNNAG00000011729)	ENSNNAG00000011802	ENSNNAG00000011823	KIAA2013 (ENSNNAG00000011839)	ENSNNAG00000011846
Lizard	MODERN SPECIES	1687															ENSACAG00000042669	ENSACAG00000001622 ##22	ENSACAG00000037234	ENSACAG00000001590
Laterata	ANCESTRAL SPECIES	29	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.a.b	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00990000205429	ENSGT00390000014309	ENSGT00390000004367	ENSGT00950000182914.a.a.b	ENSGT00940000165186.A	ENSGT00940000165186.C	ENSGT00940000158624	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000007249	ENSPMRG00000007270	MMEL1 (ENSPMRG00000007607)	TTC34 (ENSPMRG00000008281)	ENSPMRG00000008300	ENSPMRG00000008310	ENSPMRG00000008318	ENSPMRG00000008325	ENSPMRG00000008341	PRDM16 (ENSPMRG00000008389)	ARHGEF16 (ENSPMRG00000008467)	MEGF6 (ENSPMRG00000008547)	ENSPMRG00000008738	TPRG1L (ENSPMRG00000008744) ##21	WRAP73 (ENSPMRG00000008757)	TP73 (ENSPMRG00000008786) ##22	ENSPMRG00000008819	ENSPMRG00000008829	ENSPMRG00000008841	ENSPMRG00000008847	ENSPMRG00000008853	LACTBL1 (ENSPMRG00000008857)	EPHB2 (ENSPMRG00000008863)	C1QB (ENSPMRG00000008869)	C1QC (ENSPMRG00000008872)	C1QA (ENSPMRG00000008880)	EPHA8 (ENSPMRG00000008889)	WNT4 (ENSPMRG00000008895)	CDC42 (ENSPMRG00000008906)	C1orf50 (ENSPMRG00000008914)	P3H1 (ENSPMRG00000008919)
Argentine black and white tegu	MODERN SPECIES	60	PLCH2 (ENSSMRG00000009016)	ENSSMRG00000009013	PANK4 (ENSSMRG00000009012)	HES5 (ENSSMRG00000009011)	ENSSMRG00000008969	ENSSMRG00000008967	ENSSMRG00000008964	ENSSMRG00000008963	ENSSMRG00000008959	ENSSMRG00000008956	PRDM16 (ENSSMRG00000008949)	ARHGEF16 (ENSSMRG00000008948)	MEGF6 (ENSSMRG00000008947)	TPRG1L (ENSSMRG00000008945) ##21	WRAP73 (ENSSMRG00000008944)	TP73 (ENSSMRG00000008941) ##22	ENSSMRG00000008939	ENSSMRG00000008938	MRPS16 (ENSSMRG00000008936)	ENSSMRG00000008932	SLC45A1 (ENSSMRG00000008924)	ENSSMRG00000008921	TMEM51 (ENSSMRG00000008920)	KAZN (ENSSMRG00000008919)	PRDM2 (ENSSMRG00000008918)	LRRC38 (ENSSMRG00000008916)	CFAP107 (ENSSMRG00000008905)	ENSSMRG00000008904	ENSSMRG00000008902	ENSSMRG00000008870	ENSSMRG00000008868
tuatara	MODERN SPECIES	573						ENSSPUG00000012590	ENSSPUG00000012572	ENSSPUG00000012561	ENSSPUG00000012547	PRDM16 (ENSSPUG00000012510)	ARHGEF16 (ENSSPUG00000012468)	MEGF6 (ENSSPUG00000012411)	ENSSPUG00000012395	TPRG1L (ENSSPUG00000012369) ##21	WRAP73 (ENSSPUG00000012346)	TP73 (ENSSPUG00000012326) ##22	MRPS16 (ENSSPUG00000012312)	ENSSPUG00000012229	SLC45A1 (ENSSPUG00000012196)	ENSSPUG00000012121	ERRFI1 (ENSSPUG00000012091)	PARK7 (ENSSPUG00000012080)	ENSSPUG00000012059 ##31	UTS2 (ENSSPUG00000012043)	PER3 (ENSSPUG00000012024)	VAMP3 (ENSSPUG00000012011)	ENSSPUG00000011997	ENSSPUG00000011990	DNAJC11 (ENSSPUG00000011937)	THAP3 (ENSSPUG00000011912)	PHF13 (ENSSPUG00000011897)
Archelosauria	ANCESTRAL SPECIES	23	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612
Archosauria	ANCESTRAL SPECIES	21	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B
Aves	ANCESTRAL SPECIES	27	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B
Neognathae	ANCESTRAL SPECIES	25	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B
Galloanserae	ANCESTRAL SPECIES	24	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B	ENSGT00940000155229
Anatidae	ANCESTRAL SPECIES	19	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000160408
Pink-footed goose	MODERN SPECIES	41	PANK4 (ENSABRG00000006428)	HES5 (ENSABRG00000006419)	ENSABRG00000006415	ENSABRG00000006411	MMEL1 (ENSABRG00000006390)	ENSABRG00000006383	ENSABRG00000006365	ENSABRG00000006355	ENSABRG00000006347	PRDM16 (ENSABRG00000006305)	ARHGEF16 (ENSABRG00000006274)	MEGF6 (ENSABRG00000006240)	ENSABRG00000006213 ##21	ENSABRG00000006202 ##21	WRAP73 (ENSABRG00000006182)	TP73 (ENSABRG00000006148) ##22	ENSABRG00000006138	LRRC47 (ENSABRG00000006041)	CEP104 (ENSABRG00000006019)	DFFB (ENSABRG00000006011)	C1orf174 (ENSABRG00000006000)	AJAP1 (ENSABRG00000005972)	NPHP4 (ENSABRG00000005809)	KCNAB2 (ENSABRG00000005628)	CHD5 (ENSABRG00000003187)	ENSABRG00000002941	ICMT (ENSABRG00000002838)	GPR153 (ENSABRG00000002830)	ACOT7 (ENSABRG00000002761)	ESPN (ENSABRG00000002704)	TNFRSF25 (ENSABRG00000002615)
Duck	MODERN SPECIES	13	PLCH2 (ENSAPLG00000008995)	ENSAPLG00000008702	PANK4 (ENSAPLG00000008017)	HES5 (ENSAPLG00000007967)	ENSAPLG00000007962	ENSAPLG00000007688	MMEL1 (ENSAPLG00000006431)	ENSAPLG00000006420	ENSAPLG00000001575	ENSAPLG00000030610	ENSAPLG00000027441	PRDM16 (ENSAPLG00000005898)	MEGF6 (ENSAPLG00000004881)	ENSAPLG00000028961 ##21	WRAP73 (ENSAPLG00000004561)	TP73 (ENSAPLG00000003880) ##22	ENSAPLG00000003870	LRRC47 (ENSAPLG00000003167)	CEP104 (ENSAPLG00000003555)	DFFB (ENSAPLG00000003431)	C1orf174 (ENSAPLG00000003376)	AJAP1 (ENSAPLG00000003166)	NPHP4 (ENSAPLG00000002485)	KCNAB2 (ENSAPLG00000000898)	CHD5 (ENSAPLG00000015475)	ENSAPLG00000023220	RNF207 (ENSAPLG00000021521)	ICMT (ENSAPLG00000020766)	GPR153 (ENSAPLG00000023029)	ACOT7 (ENSAPLG00000015276)	ENSAPLG00000018094
Phasianidae	ANCESTRAL SPECIES	23	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602
Phasianidae_b	ANCESTRAL SPECIES	30	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602
Chicken	MODERN SPECIES	13	RER1 (ENSGALG00010020027)	PEX10 (ENSGALG00010020019)	PLCH2 (ENSGALG00010019834)	KBP (ENSGALG00010019744)	PANK4 (ENSGALG00010019731)	HES5 (ENSGALG00010019724)	ENSGALG00010019700	MMEL1 (ENSGALG00010019692)	TTC34 (ENSGALG00010019666)	ENSGALG00010019660	PRDM16 (ENSGALG00010019648)	ARHGEF16 (ENSGALG00010021459)	MEGF6 (ENSGALG00010021409)	TPRG1L (ENSGALG00010021382) ##21	WRAP73 (ENSGALG00010021361)	TP73 (ENSGALG00010021318) ##22	CCDC27 (ENSGALG00010021277)	LRRC47 (ENSGALG00010021267)	CEP104 (ENSGALG00010021259)	C21H1orf174 (ENSGALG00010021230)	DFFB (ENSGALG00010021223)	AJAP1 (ENSGALG00010019630)	NPHP4 (ENSGALG00010019618)	KCNAB2 (ENSGALG00010019598)	CHD5 (ENSGALG00010019284)	RPL22 (ENSGALG00010019212)	RNF207 (ENSGALG00010019206)	ICMT (ENSGALG00010019189)	GPR153 (ENSGALG00010019169)	ACOT7 (ENSGALG00010019141)	HES2 (ENSGALG00010019092)
Turkey	MODERN SPECIES	15	ENSMGAG00000017960	PEX14 (ENSMGAG00000004500)	ENSMGAG00000018348	ENSMGAG00000004515	SRM (ENSMGAG00000004657)	ENSMGAG00000004655 ##16	ENSMGAG00000021237 ##13	ENSMGAG00000004578 ##13	ENSMGAG00000004637	EXOSC10 (ENSMGAG00000004665)	PRDM16 (ENSMGAG00000001857)	ARHGEF16 (ENSMGAG00000001813)	MEGF6 (ENSMGAG00000001770)	TPRG1L (ENSMGAG00000001736) ##21	WRAP73 (ENSMGAG00000001692)	TP73 (ENSMGAG00000001562) ##22	LRRC47 (ENSMGAG00000001670)	CEP104 (ENSMGAG00000001637)	DFFB (ENSMGAG00000001603)	C1orf174 (ENSMGAG00000001599)	AJAP1 (ENSMGAG00000001557)	ENSMGAG00000020614	NPHP4 (ENSMGAG00000001495)	KCNAB2 (ENSMGAG00000001416)	CHD5 (ENSMGAG00000001055)	ENSMGAG00000017803	RNF207 (ENSMGAG00000001396)	ICMT (ENSMGAG00000021716)	GPR153 (ENSMGAG00000001364)	ACOT7 (ENSMGAG00000001348)	ENSMGAG00000018345
Japanese quail	MODERN SPECIES	13	PLCH2 (ENSCJPG00005009504)	ENSCJPG00005009502	PANK4 (ENSCJPG00005009501)	HES5 (ENSCJPG00005009500)	ENSCJPG00005009499	ENSCJPG00005009498	MMEL1 (ENSCJPG00005009497)	TTC34 (ENSCJPG00005009495)	ENSCJPG00005009492	ENSCJPG00005009491	PRDM16 (ENSCJPG00005009370)	ARHGEF16 (ENSCJPG00005009362)	MEGF6 (ENSCJPG00005009356)	TPRG1L (ENSCJPG00005009353) ##21	WRAP73 (ENSCJPG00005009351)	TP73 (ENSCJPG00005009350) ##22	ENSCJPG00005009349	LRRC47 (ENSCJPG00005009348)	CEP104 (ENSCJPG00005009347)	DFFB (ENSCJPG00005009346)	C1orf174 (ENSCJPG00005009345)	AJAP1 (ENSCJPG00005009344)	NPHP4 (ENSCJPG00005009342)	CHD5 (ENSCJPG00005007425)	ENSCJPG00005007420	ICMT (ENSCJPG00005007418)	GPR153 (ENSCJPG00005007417)	ACOT7 (ENSCJPG00005007416)	ENSCJPG00005007415	ESPN (ENSCJPG00005007413)	ENSCJPG00005007412
Neognathae_b	ANCESTRAL SPECIES	25	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00940000155229	ENSGT00940000160408
Passeriformes	ANCESTRAL SPECIES	22	ENSGT00940000160546	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00940000155229	ENSGT00940000160408
Great tit	MODERN SPECIES	13	RER1 (ENSPMJG00000013345)	PEX10 (ENSPMJG00000013344)	PLCH2 (ENSPMJG00000013343)	ENSPMJG00000013342	PANK4 (ENSPMJG00000013341)	ENSPMJG00000013339	ENSPMJG00000013338	MMEL1 (ENSPMJG00000013337)	TTC34 (ENSPMJG00000013335)	ENSPMJG00000013332	PRDM16 (ENSPMJG00000013325)	ARHGEF16 (ENSPMJG00000013320)	MEGF6 (ENSPMJG00000013314)	TPRG1L (ENSPMJG00000013312) ##21	WRAP73 (ENSPMJG00000013309)	TP73 (ENSPMJG00000013308) ##22	ENSPMJG00000013307	LRRC47 (ENSPMJG00000013302)	CEP104 (ENSPMJG00000013301)	DFFB (ENSPMJG00000013300)	C1orf174 (ENSPMJG00000013299)	AJAP1 (ENSPMJG00000013298)	NPHP4 (ENSPMJG00000013295)	KCNAB2 (ENSPMJG00000013294)	CHD5 (ENSPMJG00000010482)	ENSPMJG00000010467	ACOT7 (ENSPMJG00000010462)	ESPN (ENSPMJG00000010461)	ENSPMJG00000010458	PLEKHG5 (ENSPMJG00000010453)	NOL9 (ENSPMJG00000010451)
Passeriformes_d	ANCESTRAL SPECIES	22	ENSGT00940000160546	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867.e	ENSGT00940000168544	ENSGT00940000157867.f	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00940000155229
Flycatcher	MODERN SPECIES	13	PANK4 (ENSFALG00000009550)	ENSFALG00000009558	ENSFALG00000024529	MMEL1 (ENSFALG00000009567)	TTC34 (ENSFALG00000024147)	ENSFALG00000026981	ENSFALG00000026308	ENSFALG00000026749	ENSFALG00000023292	PRDM16 (ENSFALG00000009580)	ARHGEF16 (ENSFALG00000009597)	ENSFALG00000009613	ENSFALG00000025143	TPRG1L (ENSFALG00000025603) ##21	WRAP73 (ENSFALG00000009624)	TP73 (ENSFALG00000009625) ##22	ENSFALG00000024400	LRRC47 (ENSFALG00000009637)	CEP104 (ENSFALG00000009640)	DFFB (ENSFALG00000009647)	ENSFALG00000009652	ENSFALG00000023762	AJAP1 (ENSFALG00000028193)	NPHP4 (ENSFALG00000009668)	KCNAB2 (ENSFALG00000009703)	ENSFALG00000026109	CHD5 (ENSFALG00000009740)	RNF207 (ENSFALG00000009779)	ICMT (ENSFALG00000009788)	ACOT7 (ENSFALG00000026397)	ENSFALG00000026961
Passeriformes_g	ANCESTRAL SPECIES	30	ENSGT00940000160546	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867.e	ENSGT00940000168544	ENSGT00940000157867.f	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00940000155229
Passeroidea	ANCESTRAL SPECIES	26	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000160951	ENSGT01010000223966	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867.f	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00940000155229	ENSGT00940000160408
Common canary	MODERN SPECIES	34	PEX10 (ENSSCAG00000000160)	PLCH2 (ENSSCAG00000000197)	ENSSCAG00000000264	PANK4 (ENSSCAG00000000387)	ENSSCAG00000000590	ENSSCAG00000000594	MMEL1 (ENSSCAG00000000604)	TTC34 (ENSSCAG00000000616)	ENSSCAG00000000625	PRDM16 (ENSSCAG00000000642)	ENSSCAG00000000673	ARHGEF16 (ENSSCAG00000000682)	MEGF6 (ENSSCAG00000000724)	TPRG1L (ENSSCAG00000000893) ##21	WRAP73 (ENSSCAG00000000916)	TP73 (ENSSCAG00000000960) ##22	ENSSCAG00000000981	LRRC47 (ENSSCAG00000001000)	CEP104 (ENSSCAG00000001062)	DFFB (ENSSCAG00000001077)	C1orf174 (ENSSCAG00000001086)	AJAP1 (ENSSCAG00000001098)	NPHP4 (ENSSCAG00000001111)	ENSSCAG00000001126	KCNAB2 (ENSSCAG00000001138)	CHD5 (ENSSCAG00000001593)	ENSSCAG00000002632	RNF207 (ENSSCAG00000002637)	ICMT (ENSSCAG00000002650)	ACOT7 (ENSSCAG00000002658)	ENSSCAG00000002663
Zebra finch	MODERN SPECIES	14	PEX10 (ENSTGUG00000002934)	PLCH2 (ENSTGUG00000002915)	ENSTGUG00000002903	PANK4 (ENSTGUG00000002880)	ENSTGUG00000019527	ENSTGUG00000020478	ENSTGUG00000021912	MMEL1 (ENSTGUG00000002838)	ENSTGUG00000002835	PRDM16 (ENSTGUG00000002807)	ENSTGUG00000021163	ARHGEF16 (ENSTGUG00000002800)	MEGF6 (ENSTGUG00000002771)	TPRG1L (ENSTGUG00000002766) ##21	WRAP73 (ENSTGUG00000002754)	TP73 (ENSTGUG00000002743) ##22	ENSTGUG00000002741	LRRC47 (ENSTGUG00000002737)	CEP104 (ENSTGUG00000002728)	DFFB (ENSTGUG00000002721)	C1orf174 (ENSTGUG00000002720)	AJAP1 (ENSTGUG00000028015)	NPHP4 (ENSTGUG00000002693)	KCNAB2 (ENSTGUG00000002658)	CHD5 (ENSTGUG00000002634)	ICMT (ENSTGUG00000002621)	RNF207 (ENSTGUG00000002624)	ACOT7 (ENSTGUG00000002611)	ESPN (ENSTGUG00000021613)	ENSTGUG00000027235	PLEKHG5 (ENSTGUG00000002606)
Medium ground finch	MODERN SPECIES	152	SKI (ENSGFOG00000009613)	RER1 (ENSGFOG00000009625)	PEX10 (ENSGFOG00000009630)	PLCH2 (ENSGFOG00000009641)	ENSGFOG00000009667	PANK4 (ENSGFOG00000009697)	ENSGFOG00000009942	ENSGFOG00000009948	MMEL1 (ENSGFOG00000009963)	TTC34 (ENSGFOG00000010034)	PRDM16 (ENSGFOG00000010051)	ARHGEF16 (ENSGFOG00000010071)	MEGF6 (ENSGFOG00000010106)	TPRG1L (ENSGFOG00000010190) ##21	WRAP73 (ENSGFOG00000010198)	TP73 (ENSGFOG00000010210) ##22
Neognathae_c	ANCESTRAL SPECIES	28	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00940000155229	ENSGT00940000160408	ENSGT00960000190387
Golden eagle	MODERN SPECIES	22	ENSACCG00020003820	PANK4 (ENSACCG00020003810)	HES5 (ENSACCG00020003795)	ENSACCG00020003782	ENSACCG00020003770	ENSACCG00020003726	MMEL1 (ENSACCG00020003566)	ENSACCG00020003411	ENSACCG00020003398	ENSACCG00020003389	PRDM16 (ENSACCG00020003329)	ARHGEF16 (ENSACCG00020003264)	MEGF6 (ENSACCG00020003162)	TPRG1L (ENSACCG00020003113) ##21	WRAP73 (ENSACCG00020003094)	TP73 (ENSACCG00020002966) ##22	LRRC47 (ENSACCG00020002851)	CEP104 (ENSACCG00020002813)	DFFB (ENSACCG00020002734)	C1orf174 (ENSACCG00020002720)	AJAP1 (ENSACCG00020002704)	NPHP4 (ENSACCG00020002684)	KCNAB2 (ENSACCG00020002635)	CHD5 (ENSACCG00020002569)	ENSACCG00020002542	RNF207 (ENSACCG00020002507)	ICMT (ENSACCG00020002468)	ACOT7 (ENSACCG00020002437)	ESPN (ENSACCG00020002403)	ENSACCG00020002381	NOL9 (ENSACCG00020002210)
Kakapo	MODERN SPECIES	10	PLCH2 (ENSSHBG00005019452)	ENSSHBG00005019442	PANK4 (ENSSHBG00005019434)	ENSSHBG00005019426	ENSSHBG00005019421	MMEL1 (ENSSHBG00005019148)	TTC34 (ENSSHBG00005019118)	ENSSHBG00005019117	ENSSHBG00005019115	PRDM16 (ENSSHBG00005019053)	ARHGEF16 (ENSSHBG00005019049)	ENSSHBG00005019047	ENSSHBG00005019045	TPRG1L (ENSSHBG00005019039) ##21	WRAP73 (ENSSHBG00005019036)	TP73 (ENSSHBG00005019031) ##22	ENSSHBG00005019029	LRRC47 (ENSSHBG00005019027)	CEP104 (ENSSHBG00005019012)	DFFB (ENSSHBG00005018999)	C1orf174 (ENSSHBG00005018996)	AJAP1 (ENSSHBG00005018994)	ENSSHBG00005018989	ENSSHBG00005018983	KCNAB2 (ENSSHBG00005018951)	CHD5 (ENSSHBG00005018926)	ENSSHBG00005018917	ICMT (ENSSHBG00005018863)	ACOT7 (ENSSHBG00005018854)	ESPN (ENSSHBG00005018841)	ENSSHBG00005018835
African ostrich	MODERN SPECIES	499	PLCH2 (ENSSCUG00000007579)	ENSSCUG00000007595	PANK4 (ENSSCUG00000007621)	HES5 (ENSSCUG00000007663)	ENSSCUG00000007665	ENSSCUG00000007669	ENSSCUG00000007672	MMEL1 (ENSSCUG00000007681)	TTC34 (ENSSCUG00000007694)	ENSSCUG00000007697	ENSSCUG00000007700	ARHGEF16 (ENSSCUG00000007714)	MEGF6 (ENSSCUG00000007729)	TPRG1L (ENSSCUG00000007750) ##21	WRAP73 (ENSSCUG00000003941)	TP73 (ENSSCUG00000003942) ##22	ENSSCUG00000003945	LRRC47 (ENSSCUG00000003949)	CEP104 (ENSSCUG00000003952)	DFFB (ENSSCUG00000003954)	ENSSCUG00000003955	AJAP1 (ENSSCUG00000003957)	ENSSCUG00000003958	NPHP4 (ENSSCUG00000003983)	KCNAB2 (ENSSCUG00000004005)	CHD5 (ENSSCUG00000004125)	ENSSCUG00000004433	ICMT (ENSSCUG00000004434)	ACOT7 (ENSSCUG00000004439)
Australian saltwater crocodile	MODERN SPECIES	45	ENSCPRG00005012638	ENSCPRG00005012630	ENSCPRG00005012627	PRXL2B (ENSCPRG00005012623)	MMEL1 (ENSCPRG00005012585)	TTC34 (ENSCPRG00005012574)	ENSCPRG00005012564	ENSCPRG00005012561	ENSCPRG00005012556	PRDM16 (ENSCPRG00005012448)	ARHGEF16 (ENSCPRG00005012418)	MEGF6 (ENSCPRG00005012388)	ENSCPRG00005012377	WRAP73 (ENSCPRG00005012374)	TPRG1L (ENSCPRG00005012371) ##21	TP73 (ENSCPRG00005012358) ##22	ENSCPRG00005012351	ENSCPRG00005012346	SMIM1 (ENSCPRG00005012344)	LRRC47 (ENSCPRG00005012342)	CEP104 (ENSCPRG00005012311)	DFFB (ENSCPRG00005012291)	C1orf174 (ENSCPRG00005012263)	ENSCPRG00005012252	ENSCPRG00005012249	ZNF576 (ENSCPRG00005012246)	CADM4 (ENSCPRG00005012239)	ENSCPRG00005012227	ENSCPRG00005012223	ENSCPRG00005012207	ENSCPRG00005012194
Cryptodira	ANCESTRAL SPECIES	24	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394
Testudinoidea	ANCESTRAL SPECIES	20	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00390000012265	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394
Emydidae	ANCESTRAL SPECIES	23	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017213.B	ENSGT00940000155229
painted turtle	MODERN SPECIES	6														TPRG1L (ENSCPBG00000019439) ##21	WRAP73 (ENSCPBG00000019434)	TP73 (ENSCPBG00000019424) ##22	CCDC27 (ENSCPBG00000019410)	LRRC47 (ENSCPBG00000019404)	CEP104 (ENSCPBG00000019398)	DFFB (ENSCPBG00000019393)	C1orf174 (ENSCPBG00000019391)	AJAP1 (ENSCPBG00000019387)	ENSCPBG00000019385	NPHP4 (ENSCPBG00000019380)	KCNAB2 (ENSCPBG00000019373)	CHD5 (ENSCPBG00000019363)	ENSCPBG00000019359	RNF207 (ENSCPBG00000019352)	PTP4A2 (ENSCPBG00000019348)	ENSCPBG00000019343	ADGRB2 (ENSCPBG00000019038)
Three-toed box turtle	MODERN SPECIES	345	PANK4 (ENSTMTG00000022507)	HES5 (ENSTMTG00000022504)	ENSTMTG00000022503	ENSTMTG00000022501	ENSTMTG00000022499	MMEL1 (ENSTMTG00000022486)	TTC34 (ENSTMTG00000022473)	ENSTMTG00000022467	ACTRT2 (ENSTMTG00000022463)	ENSTMTG00000022461	PRDM16 (ENSTMTG00000022429)	ARHGEF16 (ENSTMTG00000022412)	MEGF6 (ENSTMTG00000022390)	TPRG1L (ENSTMTG00000022379) ##21	WRAP73 (ENSTMTG00000022367)	TP73 (ENSTMTG00000022361) ##22	ENSTMTG00000022357	ENSTMTG00000022352	ENSTMTG00000022350	SMIM1 (ENSTMTG00000022345)	LRRC47 (ENSTMTG00000022341)	CEP104 (ENSTMTG00000022332)	DFFB (ENSTMTG00000022327)	C1orf174 (ENSTMTG00000022323)	AJAP1 (ENSTMTG00000022320)	NPHP4 (ENSTMTG00000022278)	KCNAB2 (ENSTMTG00000022261)	CHD5 (ENSTMTG00000018313)	ENSTMTG00000017782	RNF207 (ENSTMTG00000017764)	ICMT (ENSTMTG00000017751)
Testudinidae	ANCESTRAL SPECIES	22	ENSGT00940000163190.b	ENSGT00940000163190.a	ENSGT00950000183126.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00390000012265	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Goode s thornscrub tortoise	MODERN SPECIES	9	ENSGEVG00005016710	ENSGEVG00005016770	ENSGEVG00005016839	MMEL1 (ENSGEVG00005016915)	TTC34 (ENSGEVG00005017278)	ENSGEVG00005017358	ACTRT2 (ENSGEVG00005017371)	ENSGEVG00005017385	ENSGEVG00005017392	PRDM16 (ENSGEVG00005017412)	ARHGEF16 (ENSGEVG00005017484)	MEGF6 (ENSGEVG00005017570)	TPRG1L (ENSGEVG00005017833) ##21	WRAP73 (ENSGEVG00005017862)	ENSGEVG00005017886	TP73 (ENSGEVG00005017919) ##22	ENSGEVG00005017964	CCDC27 (ENSGEVG00005017982)	SMIM1 (ENSGEVG00005017996)	LRRC47 (ENSGEVG00005018005)	CEP104 (ENSGEVG00005018055)	DFFB (ENSGEVG00005018090)	C1orf174 (ENSGEVG00005018111)	AJAP1 (ENSGEVG00005018130)	NPHP4 (ENSGEVG00005018170)	KCNAB2 (ENSGEVG00005018298)	ENSGEVG00005018327	CHD5 (ENSGEVG00005007407)	ENSGEVG00005020030	RNF207 (ENSGEVG00005020038)	ICMT (ENSGEVG00005020049)
Abingdon island giant tortoise	MODERN SPECIES	2440	ENSCABG00000018326	ENSCABG00000018324	ENSCABG00000018318	ENSCABG00000018315	MMEL1 (ENSCABG00000018300)	TTC34 (ENSCABG00000018293)	ENSCABG00000018289	ACTRT2 (ENSCABG00000018288)	ENSCABG00000018287	ENSCABG00000018286	PRDM16 (ENSCABG00000018281)	ARHGEF16 (ENSCABG00000018280)	MEGF6 (ENSCABG00000018275)	TPRG1L (ENSCABG00000018268) ##21	WRAP73 (ENSCABG00000018264)	TP73 (ENSCABG00000018237) ##22	ENSCABG00000018228	SMIM1 (ENSCABG00000018225)	LRRC47 (ENSCABG00000018208)	CEP104 (ENSCABG00000018203)	ENSCABG00000018201	C1orf174 (ENSCABG00000018200)	AJAP1 (ENSCABG00000018197)	NPHP4 (ENSCABG00000018196)	KCNAB2 (ENSCABG00000018193)	CHD5 (ENSCABG00000018191)	ENSCABG00000018189	RNF207 (ENSCABG00000018147)	ICMT (ENSCABG00000018141)	HES3 (ENSCABG00000018136)	GPR153 (ENSCABG00000018132)
Chinese turtle	MODERN SPECIES	1192	PANK4 (ENSPSIG00000004017)	HES5 (ENSPSIG00000004046)	ENSPSIG00000004058	ENSPSIG00000004060	ENSPSIG00000004072	ENSPSIG00000004078	TTC34 (ENSPSIG00000004087)	ENSPSIG00000001325	ACTRT2 (ENSPSIG00000000593)	PRDM16 (ENSPSIG00000004093)	ARHGEF16 (ENSPSIG00000004107)	ENSPSIG00000004127	ENSPSIG00000004131	TPRG1L (ENSPSIG00000004141) ##21	WRAP73 (ENSPSIG00000004149)	TP73 (ENSPSIG00000004164) ##22	CCDC27 (ENSPSIG00000004187)	SMIM1 (ENSPSIG00000004193)	LRRC47 (ENSPSIG00000004196)	CEP104 (ENSPSIG00000004209)	DFFB (ENSPSIG00000004216)	C1orf174 (ENSPSIG00000004225)	AJAP1 (ENSPSIG00000004240)	NPHP4 (ENSPSIG00000004272)	KCNAB2 (ENSPSIG00000006026)	CHD5 (ENSPSIG00000006414)	ENSPSIG00000005212	RNF207 (ENSPSIG00000005274)	ICMT (ENSPSIG00000005363)	GPR153 (ENSPSIG00000005443)	ACOT7 (ENSPSIG00000005602)
Mammalia	ANCESTRAL SPECIES	17	ENSGT00940000158374	ENSGT00940000163942	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00930000152248	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612
Theria	ANCESTRAL SPECIES	16	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.b.a ##22
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000163190.b	ENSGT00940000162427.b	ENSGT00940000162566	ENSGT00940000162427.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00390000012265	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.a ##22	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394
Tasmanian devil	MODERN SPECIES	2	PRXL2B (ENSSHAG00000027945)	ENSSHAG00000020665	ENSSHAG00000024475	ENSSHAG00000031707	MMEL1 (ENSSHAG00000014826)	ENSSHAG00000015062	ENSSHAG00000006488	ACTRT2 (ENSSHAG00000006523)	ENSSHAG00000028873	ENSSHAG00000021876	PRDM16 (ENSSHAG00000011652)	ARHGEF16 (ENSSHAG00000001998)	ENSSHAG00000003737	ENSSHAG00000008770	ENSSHAG00000021883 ##21	ENSSHAG00000022589 ##22	ENSSHAG00000005668 ##22	ENSSHAG00000006463	LRRC47 (ENSSHAG00000007360)	ENSSHAG00000022217	CEP104 (ENSSHAG00000007949)	DFFB (ENSSHAG00000008392)	ENSSHAG00000008671	AJAP1 (ENSSHAG00000015099)	NPHP4 (ENSSHAG00000018344)	KCNAB2 (ENSSHAG00000022634)	CHD5 (ENSSHAG00000018641)	RNF207 (ENSSHAG00000018741)	ICMT (ENSSHAG00000025925)	HES3 (ENSSHAG00000023039)	GPR153 (ENSSHAG00000018779)
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000162427.b	ENSGT00940000162566	ENSGT00940000162427.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.a ##22	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000162566	ENSGT00940000162427.b	ENSGT00940000162427.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.a ##22	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291.d	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a.b	ENSGT00510000048612	ENSGT00390000017394
Common wonbat	MODERN SPECIES	1125	ENSVURG00010024004	ENSVURG00010024002	VPS13D (ENSVURG00010024000)	DHRS3 (ENSVURG00010023997)	ENSVURG00010023994	ENSVURG00010023992	ENSVURG00010023960	ENSVURG00010023936	ENSVURG00010023926	ACTRT2 (ENSVURG00010023924)	ENSVURG00010023914	ENSVURG00010023904	ENSVURG00010023885	ENSVURG00010023874 ##21	ENSVURG00010023866	ENSVURG00010023860 ##22	ENSVURG00010023857 ##22	ENSVURG00010023851	ENSVURG00010023849	ENSVURG00010023848	ENSVURG00010023844	ENSVURG00010023836	ENSVURG00010023831	ENSVURG00010023827	ENSVURG00010023824
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Opossum	MODERN SPECIES	3	ENSMODG00000047990	ENSMODG00000016433	RNF223 (ENSMODG00000049145)	ENSMODG00000016437	ENSMODG00000016438	ENSMODG00000028425	SDF4 (ENSMODG00000016449)	B3GALT6 (ENSMODG00000016450)	UBE2J2 (ENSMODG00000038172)	ENSMODG00000023686	ENSMODG00000044366	ENSMODG00000023685	ENSMODG00000027721	TPRG1L (ENSMODG00000006651) ##21	WRAP73 (ENSMODG00000006647)	ENSMODG00000049714 ##22	ENSMODG00000045904	LRRC47 (ENSMODG00000006554)	ENSMODG00000006456	CEP104 (ENSMODG00000006543)	DFFB (ENSMODG00000006492)	C1orf174 (ENSMODG00000006479)	AJAP1 (ENSMODG00000006438)	NPHP4 (ENSMODG00000006433)	KCNAB2 (ENSMODG00000006380)	ENSMODG00000050500	ENSMODG00000006294	RPL22 (ENSMODG00000051218)	RNF207 (ENSMODG00000006209)	ICMT (ENSMODG00000006189)	GPR153 (ENSMODG00000006174)
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000162427.b	ENSGT00940000162566	ENSGT00940000162427.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000165349.d.b	ENSGT00390000012265	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.a ##22	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000162427.b	ENSGT00940000162566	ENSGT00940000162427.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.a ##22	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000162836	ENSGT00940000163190.b	ENSGT00940000162566	ENSGT00940000162427.b	ENSGT00940000162427.a	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000165349.c	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b.a ##22	ENSGT00950000183153.c.b.a.b.b ##22	ENSGT00940000154171.B	ENSGT00520000060291.d	ENSGT00530000063489.b	ENSGT00940000157606.a	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.a.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1125						ENSVURG00010024486	ENSVURG00010024482	ENSVURG00010024480	ACTRT1 (ENSVURG00010024478)	ENSVURG00010024476	ENSVURG00010024453	ENSVURG00010024448	ENSVURG00010024426	ENSVURG00010024416 ##21	ENSVURG00010024411	ENSVURG00010024373 ##22	ENSVURG00010024353	ENSVURG00010024346	ENSVURG00010024342	ENSVURG00010024337	ENSVURG00010024330	ENSVURG00010024327	ENSVURG00010024325	ENSVURG00010024322	AJAP1 (ENSVURG00010024317)	NPHP4 (ENSVURG00010024315)	ENSVURG00010024312	CHD5 (ENSVURG00010024302)	ENSVURG00010024292	RNF207 (ENSVURG00010024289)	ICMT (ENSVURG00010024285)
Common wonbat	MODERN SPECIES	1125	ENSVURG00010024002	VPS13D (ENSVURG00010024000)	DHRS3 (ENSVURG00010023997)	ENSVURG00010023994	ENSVURG00010023992	ENSVURG00010023960	ENSVURG00010023936	ENSVURG00010023926	ACTRT2 (ENSVURG00010023924)	ENSVURG00010023914	ENSVURG00010023904	ENSVURG00010023885	ENSVURG00010023874 ##21	ENSVURG00010023866	ENSVURG00010023860 ##22	ENSVURG00010023857 ##22	ENSVURG00010023851	ENSVURG00010023849	ENSVURG00010023848	ENSVURG00010023844	ENSVURG00010023836	ENSVURG00010023831	ENSVURG00010023827	ENSVURG00010023824
koala	MODERN SPECIES	8	ENSPCIG00000032650	ENSPCIG00000016726	PRXL2B (ENSPCIG00000016727)	ENSPCIG00000020121	ENSPCIG00000035309	MMEL1 (ENSPCIG00000020116)	TTC34 (ENSPCIG00000020112)	ENSPCIG00000008522	ACTRT2 (ENSPCIG00000036687)	PRDM16 (ENSPCIG00000027601)	ENSPCIG00000027599	ARHGEF16 (ENSPCIG00000009024)	MEGF6 (ENSPCIG00000017410)	TPRG1L (ENSPCIG00000035705) ##21	WRAP73 (ENSPCIG00000003702)	TP73 (ENSPCIG00000035063) ##22	ENSPCIG00000024976	SMIM1 (ENSPCIG00000003642)	LRRC47 (ENSPCIG00000003638)	ENSPCIG00000003632	CEP104 (ENSPCIG00000003614)	DFFB (ENSPCIG00000003609)	ENSPCIG00000003595	AJAP1 (ENSPCIG00000033111)	ENSPCIG00000028328	NPHP4 (ENSPCIG00000003601)	KCNAB2 (ENSPCIG00000028321)	CHD5 (ENSPCIG00000028310)	ENSPCIG00000028303	RNF207 (ENSPCIG00000028302)	ICMT (ENSPCIG00000028301)
Wallaby	MODERN SPECIES	310																TP73 (ENSMEUG00000000762) ##22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000020665	ENSSHAG00000024475	ENSSHAG00000031707	MMEL1 (ENSSHAG00000014826)	ENSSHAG00000015062	ENSSHAG00000006488	ACTRT2 (ENSSHAG00000006523)	ENSSHAG00000028873	ENSSHAG00000021876	PRDM16 (ENSSHAG00000011652)	ARHGEF16 (ENSSHAG00000001998)	ENSSHAG00000003737	ENSSHAG00000008770	ENSSHAG00000021883 ##21	ENSSHAG00000022589 ##22	ENSSHAG00000005668 ##22	ENSSHAG00000006463	LRRC47 (ENSSHAG00000007360)	ENSSHAG00000022217	CEP104 (ENSSHAG00000007949)	DFFB (ENSSHAG00000008392)	ENSSHAG00000008671	AJAP1 (ENSSHAG00000015099)	NPHP4 (ENSSHAG00000018344)	KCNAB2 (ENSSHAG00000022634)	CHD5 (ENSSHAG00000018641)	RNF207 (ENSSHAG00000018741)	ICMT (ENSSHAG00000025925)	HES3 (ENSSHAG00000023039)	GPR153 (ENSSHAG00000018779)	ENSSHAG00000018789
Eutheria	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.b ##22
Hedgehog	MODERN SPECIES	8766																TP73 (ENSEEUG00000013128) ##22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Equus	ANCESTRAL SPECIES	2	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT01090000263435	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Donkey	MODERN SPECIES	25	PLCH2 (ENSEASG00005014320)	PANK4 (ENSEASG00005014319)	HES5 (ENSEASG00005036132)	TNFRSF14 (ENSEASG00005021881)	ENSEASG00005026859	PRXL2B (ENSEASG00005021879)	MMEL1 (ENSEASG00005021878)	TTC34 (ENSEASG00005021877)	ENSEASG00005037763	ACTRT2 (ENSEASG00005033348)	PRDM16 (ENSEASG00005021866)	ARHGEF16 (ENSEASG00005021851)	MEGF6 (ENSEASG00005021832)	TPRG1L (ENSEASG00005038166) ##21	WRAP73 (ENSEASG00005021814)	TP73 (ENSEASG00005021809) ##22	ENSEASG00005038805	ENSEASG00005021797	SMIM1 (ENSEASG00005037088)	LRRC47 (ENSEASG00005021788)	CEP104 (ENSEASG00005021781)	DFFB (ENSEASG00005021775)	C1orf174 (ENSEASG00005021772)	ENSEASG00005026764	AJAP1 (ENSEASG00005021769)	NPHP4 (ENSEASG00005021686)	KCNAB2 (ENSEASG00005021626)	CHD5 (ENSEASG00005021464)	RPL22 (ENSEASG00005021348)	RNF207 (ENSEASG00005021343)	ENSEASG00005033244
Horse	MODERN SPECIES	11	PEX10 (ENSECAG00000009743)	PLCH2 (ENSECAG00000031378)	PANK4 (ENSECAG00000035260)	HES5 (ENSECAG00000036474)	ENSECAG00000008751	ENSECAG00000056137	PRXL2B (ENSECAG00000008177)	MMEL1 (ENSECAG00000020732)	TTC34 (ENSECAG00000020233)	ACTRT2 (ENSECAG00000001137)	PRDM16 (ENSECAG00000017045)	ARHGEF16 (ENSECAG00000015621)	MEGF6 (ENSECAG00000013176)	TPRG1L (ENSECAG00000012483) ##21	WRAP73 (ENSECAG00000006712)	TP73 (ENSECAG00000000771) ##22	CCDC27 (ENSECAG00000023289)	CEP104 (ENSECAG00000021352)	DFFB (ENSECAG00000020540)	C2H1orf174 (ENSECAG00000020498)	ENSECAG00000054192	ENSECAG00000037307	AJAP1 (ENSECAG00000020464)	NPHP4 (ENSECAG00000017126)	KCNAB2 (ENSECAG00000011806)	CHD5 (ENSECAG00000025043)	RPL22 (ENSECAG00000025022)	RNF207 (ENSECAG00000024940)	HES3 (ENSECAG00000024724)	GPR153 (ENSECAG00000024683)	ICMT (ENSECAG00000024730)
Chiroptera	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d.e	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d.e	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Greater horseshoe bat	MODERN SPECIES	27	RER1 (ENSRFEG00010015410)	PEX10 (ENSRFEG00010015472)	PLCH2 (ENSRFEG00010015517)	PANK4 (ENSRFEG00010015587)	HES5 (ENSRFEG00010015965)	ENSRFEG00010016014	PRXL2B (ENSRFEG00010005744)	MMEL1 (ENSRFEG00010005854)	TTC34 (ENSRFEG00010005920)	ACTRT2 (ENSRFEG00010005955)	PRDM16 (ENSRFEG00010005997)	ARHGEF16 (ENSRFEG00010006044)	MEGF6 (ENSRFEG00010006228)	TPRG1L (ENSRFEG00010006556) ##21	WRAP73 (ENSRFEG00010006610)	TP73 (ENSRFEG00010006878) ##22	CCDC27 (ENSRFEG00010007839)	SMIM1 (ENSRFEG00010008202)	LRRC47 (ENSRFEG00010008253)	CEP104 (ENSRFEG00010008352)	DFFB (ENSRFEG00010008429)	C1orf174 (ENSRFEG00010008478)	AJAP1 (ENSRFEG00010008529)	NPHP4 (ENSRFEG00010008581)	KCNAB2 (ENSRFEG00010008689)	CHD5 (ENSRFEG00010009218)	RPL22 (ENSRFEG00010009271)	RNF207 (ENSRFEG00010009315)	ICMT (ENSRFEG00010009345)	HES3 (ENSRFEG00010009376)	GPR153 (ENSRFEG00010009415)
Megabat	MODERN SPECIES	3376																TP73 (ENSPVAG00000008937) ##22
Carnivora	ANCESTRAL SPECIES	1	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Caniformia	ANCESTRAL SPECIES	2	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00980000202873	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Canidae	ANCESTRAL SPECIES	11	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00980000202873	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Red fox	MODERN SPECIES	51	RER1 (ENSVVUG00000027185)	PEX10 (ENSVVUG00000027180)	PLCH2 (ENSVVUG00000027173)	PANK4 (ENSVVUG00000027167)	HES5 (ENSVVUG00000027162)	TNFRSF14 (ENSVVUG00000027159)	ENSVVUG00000027156	MMEL1 (ENSVVUG00000027153)	ENSVVUG00000027152	ACTRT2 (ENSVVUG00000027150)	PRDM16 (ENSVVUG00000027141)	ARHGEF16 (ENSVVUG00000027137)	MEGF6 (ENSVVUG00000027127)	ENSVVUG00000027125 ##21	WRAP73 (ENSVVUG00000027124)	TP73 (ENSVVUG00000027122) ##22	CCDC27 (ENSVVUG00000027120)	SMIM1 (ENSVVUG00000027119)	LRRC47 (ENSVVUG00000027118)	CEP104 (ENSVVUG00000027077)	DFFB (ENSVVUG00000027063)	CUNH1orf174 (ENSVVUG00000027059)	AJAP1 (ENSVVUG00000027045)	NPHP4 (ENSVVUG00000027025)	KCNAB2 (ENSVVUG00000027017)	CHD5 (ENSVVUG00000026480)	ENSVVUG00000026436	RNF207 (ENSVVUG00000026422)	ICMT (ENSVVUG00000026410)	HES3 (ENSVVUG00000026407)	GPR153 (ENSVVUG00000026400)
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00980000202873	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Dingo	MODERN SPECIES	373	ENSCAFG00020011281	PLCH2 (ENSCAFG00020011258)	PANK4 (ENSCAFG00020010480)	HES5 (ENSCAFG00020010437)	TNFRSF14 (ENSCAFG00020010432)	ENSCAFG00020010431	PRXL2B (ENSCAFG00020010428)	MMEL1 (ENSCAFG00020010044)	ENSCAFG00020010021	ACTRT2 (ENSCAFG00020010000)	PRDM16 (ENSCAFG00020009879)	ARHGEF16 (ENSCAFG00020009867)	MEGF6 (ENSCAFG00020009835)	TPRG1L (ENSCAFG00020009826) ##21	WRAP73 (ENSCAFG00020009813)	TP73 (ENSCAFG00020009763) ##22	CCDC27 (ENSCAFG00020009737)	SMIM1 (ENSCAFG00020009733)	LRRC47 (ENSCAFG00020009667)	CEP104 (ENSCAFG00020009559)	DFFB (ENSCAFG00020009541)	C1orf174 (ENSCAFG00020009536)	AJAP1 (ENSCAFG00020009526)	NPHP4 (ENSCAFG00020009004)	KCNAB2 (ENSCAFG00020008857)	CHD5 (ENSCAFG00020008689)	RPL22 (ENSCAFG00020008674)	RNF207 (ENSCAFG00020008598)	ICMT (ENSCAFG00020008589)	HES3 (ENSCAFG00020008584)	GPR153 (ENSCAFG00020008576)
Dog	DUPLICATION
Dog	MODERN SPECIES	33	PLCH2 (ENSCAFG00845017655)	PANK4 (ENSCAFG00845018238)	HES5 (ENSCAFG00845018404)	TNFRSF14 (ENSCAFG00845018469)	ENSCAFG00845018523	ENSCAFG00845018552	MMEL1 (ENSCAFG00845018734)	TTC34 (ENSCAFG00845019083)	ACTRT2 (ENSCAFG00845019139)	PRDM16 (ENSCAFG00845019198)	ARHGEF16 (ENSCAFG00845019417)	MEGF6 (ENSCAFG00845019613)	TPRG1L (ENSCAFG00845020057) ##21	WRAP73 (ENSCAFG00845020112)	ENSCAFG00845020210 ##22	ENSCAFG00845020265 ##22	ENSCAFG00845020330	SMIM1 (ENSCAFG00845020468)	LRRC47 (ENSCAFG00845020519)	CEP104 (ENSCAFG00845020633)	DFFB (ENSCAFG00845020920)	C5H1orf174 (ENSCAFG00845021062)	AJAP1 (ENSCAFG00845021127)	NPHP4 (ENSCAFG00845021358)	KCNAB2 (ENSCAFG00845022417)	CHD5 (ENSCAFG00845023105)	RPL22 (ENSCAFG00845023371)	RNF207 (ENSCAFG00845023445)	ICMT (ENSCAFG00845023601)	HES3 (ENSCAFG00845023694)	ACOT7 (ENSCAFG00845023826)
Dog	MODERN SPECIES	33	PEX10 (ENSCAFG00845017381)	PLCH2 (ENSCAFG00845017655)	PANK4 (ENSCAFG00845018238)	HES5 (ENSCAFG00845018404)	TNFRSF14 (ENSCAFG00845018469)	ENSCAFG00845018523	ENSCAFG00845018552	MMEL1 (ENSCAFG00845018734)	TTC34 (ENSCAFG00845019083)	ACTRT2 (ENSCAFG00845019139)	PRDM16 (ENSCAFG00845019198)	ARHGEF16 (ENSCAFG00845019417)	MEGF6 (ENSCAFG00845019613)	TPRG1L (ENSCAFG00845020057) ##21	WRAP73 (ENSCAFG00845020112)	ENSCAFG00845020210 ##22	ENSCAFG00845020265 ##22	ENSCAFG00845020330	SMIM1 (ENSCAFG00845020468)	LRRC47 (ENSCAFG00845020519)	CEP104 (ENSCAFG00845020633)	DFFB (ENSCAFG00845020920)	C5H1orf174 (ENSCAFG00845021062)	AJAP1 (ENSCAFG00845021127)	NPHP4 (ENSCAFG00845021358)	KCNAB2 (ENSCAFG00845022417)	CHD5 (ENSCAFG00845023105)	RPL22 (ENSCAFG00845023371)	RNF207 (ENSCAFG00845023445)	ICMT (ENSCAFG00845023601)	HES3 (ENSCAFG00845023694)
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162427	ENSGT00980000202873	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000161806.f	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Ferret	MODERN SPECIES	299	ENSMPUG00000020166	PANK4 (ENSMPUG00000007649)	ENSMPUG00000020165	TNFRSF14 (ENSMPUG00000007605)	PRXL2B (ENSMPUG00000007537)	MMEL1 (ENSMPUG00000007515)	ENSMPUG00000007488	ACTRT2 (ENSMPUG00000020164)	ENSMPUG00000020163	PRDM16 (ENSMPUG00000007479)	ARHGEF16 (ENSMPUG00000007468)	ENSMPUG00000020162	MEGF6 (ENSMPUG00000007445)	ENSMPUG00000007437 ##21	WRAP73 (ENSMPUG00000007419)	TP73 (ENSMPUG00000007407) ##22	CCDC27 (ENSMPUG00000007331)	LRRC47 (ENSMPUG00000007321)	ENSMPUG00000020161	CEP104 (ENSMPUG00000007299)	DFFB (ENSMPUG00000007240)	C1orf174 (ENSMPUG00000007218)	AJAP1 (ENSMPUG00000007210)	NPHP4 (ENSMPUG00000007185)	KCNAB2 (ENSMPUG00000007154)	CHD5 (ENSMPUG00000007122)	RPL22 (ENSMPUG00000007087)	RNF207 (ENSMPUG00000007028)	ICMT (ENSMPUG00000006994)	HES3 (ENSMPUG00000006974)	GPR153 (ENSMPUG00000006954)
American mink	MODERN SPECIES	9												ARHGEF16 (ENSNVIG00000004180)	MEGF6 (ENSNVIG00000004240)	ENSNVIG00000004256 ##21	WRAP73 (ENSNVIG00000004268)	TP73 (ENSNVIG00000004300) ##22	ENSNVIG00000004315	YA047 (ENSNVIG00000004325)	ENSNVIG00000004334	CEP104 (ENSNVIG00000004346)	ENSNVIG00000004392	DFFB (ENSNVIG00000004396)	C1orf174 (ENSNVIG00000004404)	AJAP1 (ENSNVIG00000004417)	NPHP4 (ENSNVIG00000004447)	KCNAB2 (ENSNVIG00000004507)	CHD5 (ENSNVIG00000004669)	RPL22 (ENSNVIG00000005016)	RNF207 (ENSNVIG00000005035)	ICMT (ENSNVIG00000005063)	HES3 (ENSNVIG00000005075)
Ursidae	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162427	ENSGT00980000202873	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00940000153314.a.a	ENSGT00510000048612	ENSGT00390000017394
Giant Panda	MODERN SPECIES	2	MORN1 (ENSAMEG00000013431)	RER1 (ENSAMEG00000013416)	PEX10 (ENSAMEG00000013408)	PLCH2 (ENSAMEG00000013357)	PANK4 (ENSAMEG00000013341)	TNFRSF14 (ENSAMEG00000013330)	ENSAMEG00000027050	PRXL2B (ENSAMEG00000013305)	MMEL1 (ENSAMEG00000013185)	ENSAMEG00000030325	PRDM16 (ENSAMEG00000009409)	ARHGEF16 (ENSAMEG00000009363)	MEGF6 (ENSAMEG00000009335)	TPRG1L (ENSAMEG00000009327) ##21	WRAP73 (ENSAMEG00000009281)	TP73 (ENSAMEG00000009237) ##22	ENSAMEG00000028237	ENSAMEG00000024232	SMIM1 (ENSAMEG00000009222)	LRRC47 (ENSAMEG00000009152)	CEP104 (ENSAMEG00000009197)	DFFB (ENSAMEG00000009176)	ENSAMEG00000009169	AJAP1 (ENSAMEG00000009149)	NPHP4 (ENSAMEG00000015773)	KCNAB2 (ENSAMEG00000009963)	CHD5 (ENSAMEG00000009880)	RPL22 (ENSAMEG00000009864)	RNF207 (ENSAMEG00000009857)	ENSAMEG00000009848	HES3 (ENSAMEG00000026095)
Ursus	ANCESTRAL SPECIES	175	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496
American black bear	MODERN SPECIES	286											ENSUAMG00000011979	ARHGEF16 (ENSUAMG00000012022)	MEGF6 (ENSUAMG00000012030)	TPRG1L (ENSUAMG00000012038) ##21	WRAP73 (ENSUAMG00000012043)	TP73 (ENSUAMG00000012058) ##22	CCDC27 (ENSUAMG00000012070)	ENSUAMG00000012077	LRRC47 (ENSUAMG00000012080)	CEP104 (ENSUAMG00000012081)	DFFB (ENSUAMG00000012083)	C1orf174 (ENSUAMG00000012084)
Polar bear	MODERN SPECIES	309	SKI (ENSUMAG00000010379)	ENSUMAG00000010410	RER1 (ENSUMAG00000010417)	PEX10 (ENSUMAG00000010425)	ENSUMAG00000010431	ENSUMAG00000010441	PRXL2B (ENSUMAG00000010456)	MMEL1 (ENSUMAG00000010478)	ENSUMAG00000010554	ACTRT2 (ENSUMAG00000010565)	PRDM16 (ENSUMAG00000010583)	ARHGEF16 (ENSUMAG00000010695)	ENSUMAG00000010730	ENSUMAG00000010734 ##21	WRAP73 (ENSUMAG00000010740)	TP73 (ENSUMAG00000010748) ##22	ENSUMAG00000010766	ENSUMAG00000010770	SMIM1 (ENSUMAG00000010776)	LRRC47 (ENSUMAG00000010781)	CEP104 (ENSUMAG00000010826)	DFFB (ENSUMAG00000011135)	C1orf174 (ENSUMAG00000011142)
Felidae	ANCESTRAL SPECIES	18	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Cat	MODERN SPECIES	239	RER1 (ENSFCAG00000033807)	PEX10 (ENSFCAG00000009519)	PLCH2 (ENSFCAG00000009520)	PANK4 (ENSFCAG00000009521)	HES5 (ENSFCAG00000040380)	TNFRSF14 (ENSFCAG00000009522)	PRXL2B (ENSFCAG00000029078)	MMEL1 (ENSFCAG00000009523)	TTC34 (ENSFCAG00000018645)	ACTRT2 (ENSFCAG00000013479)	PRDM16 (ENSFCAG00000013481)	ARHGEF16 (ENSFCAG00000013482)	MEGF6 (ENSFCAG00000031840)	TPRG1L (ENSFCAG00000011625) ##21	WRAP73 (ENSFCAG00000011626)	TP73 (ENSFCAG00000011627) ##22	CCDC27 (ENSFCAG00000011629)	ENSFCAG00000038865	LRRC47 (ENSFCAG00000011632)	CEP104 (ENSFCAG00000011633)	DFFB (ENSFCAG00000011634)	CC1H1orf174 (ENSFCAG00000011635)	AJAP1 (ENSFCAG00000045902)	NPHP4 (ENSFCAG00000006317)	KCNAB2 (ENSFCAG00000006318)	CHD5 (ENSFCAG00000006319)	RPL22 (ENSFCAG00000037105)	RNF207 (ENSFCAG00000006321)	ICMT (ENSFCAG00000019179)	HES3 (ENSFCAG00000045063)	GPR153 (ENSFCAG00000006322)
Panthera	ANCESTRAL SPECIES	4	ENSGT00510000047137.g	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Panthera_a	ANCESTRAL SPECIES	14	ENSGT00510000047137.g	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
leopard	MODERN SPECIES	37	MORN1 (ENSPPRG00000004889)	ENSPPRG00000001314	PEX10 (ENSPPRG00000023317)	PLCH2 (ENSPPRG00000022333)	PANK4 (ENSPPRG00000012716)	ENSPPRG00000011932	ENSPPRG00000011449	PRXL2B (ENSPPRG00000010748)	MMEL1 (ENSPPRG00000008225)	TTC34 (ENSPPRG00000007069)	ACTRT2 (ENSPPRG00000019061)	PRDM16 (ENSPPRG00000005997)	ARHGEF16 (ENSPPRG00000002621)	TPRG1L (ENSPPRG00000015182) ##21	WRAP73 (ENSPPRG00000013259)	TP73 (ENSPPRG00000012593) ##22	ENSPPRG00000006216	SMIM1 (ENSPPRG00000005774)	LRRC47 (ENSPPRG00000005261)	CEP104 (ENSPPRG00000004879)	DFFB (ENSPPRG00000003296)	C1orf174 (ENSPPRG00000001986)	NPHP4 (ENSPPRG00000001532)	KCNAB2 (ENSPPRG00000023319)	CHD5 (ENSPPRG00000009453)	RPL22 (ENSPPRG00000006034)	RNF207 (ENSPPRG00000005369)	ICMT (ENSPPRG00000004786)	ENSPPRG00000004423	ENSPPRG00000004164	GPR153 (ENSPPRG00000003354)
lion	MODERN SPECIES	8	ENSPLOG00000011927	PEX10 (ENSPLOG00000011873)	PLCH2 (ENSPLOG00000011282)	PANK4 (ENSPLOG00000010857)	HES5 (ENSPLOG00000010798)	ENSPLOG00000010741	PRXL2B (ENSPLOG00000010589)	MMEL1 (ENSPLOG00000010343)	ENSPLOG00000010256	ACTRT2 (ENSPLOG00000010224)	PRDM16 (ENSPLOG00000009846)	ARHGEF16 (ENSPLOG00000009683)	MEGF6 (ENSPLOG00000009222)	TPRG1L (ENSPLOG00000009049) ##21	WRAP73 (ENSPLOG00000008885)	TP73 (ENSPLOG00000008730) ##22	ENSPLOG00000008571	ENSPLOG00000008511	SMIM1 (ENSPLOG00000008472)	LRRC47 (ENSPLOG00000008439)	CEP104 (ENSPLOG00000008385)	DFFB (ENSPLOG00000008311)	ENSPLOG00000008274	AJAP1 (ENSPLOG00000008228)	NPHP4 (ENSPLOG00000007955)	KCNAB2 (ENSPLOG00000007457)	CHD5 (ENSPLOG00000007198)	RPL22 (ENSPLOG00000007126)	ICMT (ENSPLOG00000006981)	HES3 (ENSPLOG00000006964)	GPR153 (ENSPLOG00000006938)
Tiger	MODERN SPECIES	113								MORN1 (ENSPTIG00000000509)	RER1 (ENSPTIG00000005335)	PEX10 (ENSPTIG00000006916)	ENSPTIG00000007523	ENSPTIG00000007804	ACTRT2 (ENSPTIG00000005278)	ENSPTIG00000012696 ##21	WRAP73 (ENSPTIG00000013226)	ENSPTIG00000013750 ##22	SMIM1 (ENSPTIG00000015792)	DFFB (ENSPTIG00000017370)	ENSPTIG00000005353	AJAP1 (ENSPTIG00000018156)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Suina	ANCESTRAL SPECIES	10	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Pig	MODERN SPECIES	14	ENSSSCG00000060855	RER1 (ENSSSCG00000026626)	ENSSSCG00000027916	PLCH2 (ENSSSCG00000029744)	PANK4 (ENSSSCG00000027299)	HES5 (ENSSSCG00000037304)	PRXL2B (ENSSSCG00000026554)	MMEL1 (ENSSSCG00000003356)	TTC34 (ENSSSCG00000034547)	ACTRT2 (ENSSSCG00000003357)	PRDM16 (ENSSSCG00000021490)	ARHGEF16 (ENSSSCG00000024223)	MEGF6 (ENSSSCG00000024678)	TPRG1L (ENSSSCG00000003359) ##21	WRAP73 (ENSSSCG00000003360)	TP73 (ENSSSCG00000025685) ##22	ENSSSCG00000039233	SMIM1 (ENSSSCG00000036305)	LRRC47 (ENSSSCG00000039516)	CEP104 (ENSSSCG00000003362)	DFFB (ENSSSCG00000021436)	C1orf174 (ENSSSCG00000031102)	AJAP1 (ENSSSCG00000031344)	NPHP4 (ENSSSCG00000029843)	KCNAB2 (ENSSSCG00000020749)	CHD5 (ENSSSCG00000003366)	RPL22 (ENSSSCG00000054047)	RNF207 (ENSSSCG00000003368)	ICMT (ENSSSCG00000003369)	HES3 (ENSSSCG00000003370)	GPR153 (ENSSSCG00000003371)
Chacoan peccary	MODERN SPECIES	40														TPRG1L (ENSCWAG00000017784) ##21	WRAP73 (ENSCWAG00000017859)	TP73 (ENSCWAG00000017958) ##22	CCDC27 (ENSCWAG00000019400)	SMIM1 (ENSCWAG00000019454)	LRRC47 (ENSCWAG00000019471)	CEP104 (ENSCWAG00000019503)	DFFB (ENSCWAG00000019556)	C1orf174 (ENSCWAG00000019588)	AJAP1 (ENSCWAG00000019602)	NPHP4 (ENSCWAG00000019726)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Camelidae	ANCESTRAL SPECIES	3	ENSGT00940000160546	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Arabian camel	MODERN SPECIES	4	SKI (ENSCDRG00005012025)	ENSCDRG00005012330	RER1 (ENSCDRG00005012407)	PEX10 (ENSCDRG00005012669)	PLCH2 (ENSCDRG00005012801)	PANK4 (ENSCDRG00005012910)	PRXL2B (ENSCDRG00005013107)	MMEL1 (ENSCDRG00005013475)	ENSCDRG00005013977	ACTRT2 (ENSCDRG00005014047)	PRDM16 (ENSCDRG00005014074)	ARHGEF16 (ENSCDRG00005014174)	MEGF6 (ENSCDRG00005014298)	TPRG1L (ENSCDRG00005014411) ##21	WRAP73 (ENSCDRG00005014438)	TP73 (ENSCDRG00005014518) ##22	CCDC27 (ENSCDRG00005014859)	SMIM1 (ENSCDRG00005014942)	LRRC47 (ENSCDRG00005014961)	CEP104 (ENSCDRG00005015030)	DFFB (ENSCDRG00005015089)	ENSCDRG00005015132	AJAP1 (ENSCDRG00005015150)	NPHP4 (ENSCDRG00005015202)	KCNAB2 (ENSCDRG00005015278)	CHD5 (ENSCDRG00005015748)	RPL22 (ENSCDRG00005016023)	RNF207 (ENSCDRG00005016073)	ICMT (ENSCDRG00005016203)	HES3 (ENSCDRG00005016251)	GPR153 (ENSCDRG00005006620)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Pecora	ANCESTRAL SPECIES	22	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00990000205429	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Percora_a	ANCESTRAL SPECIES	15	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00990000205429	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Bovinae	ANCESTRAL SPECIES	12	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Bos	ANCESTRAL SPECIES	12	ENSGT00940000161806	ENSGT00510000047137.f	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Bos_b	ANCESTRAL SPECIES	27	ENSGT00940000161806	ENSGT00510000047137.f	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Hybrid Bos Indicus	MODERN SPECIES	7	SKI (ENSBIXG00005014972)	RER1 (ENSBIXG00005015032)	ENSBIXG00005015063	PLCH2 (ENSBIXG00005015219)	PANK4 (ENSBIXG00005015300)	HES5 (ENSBIXG00005015317)	PRXL2B (ENSBIXG00005006344)	MMEL1 (ENSBIXG00005002345)	TTC34 (ENSBIXG00005015606)	ACTRT2 (ENSBIXG00005007144)	PRDM16 (ENSBIXG00005015656)	ARHGEF16 (ENSBIXG00005015737)	MEGF6 (ENSBIXG00005015848)	TPRG1L (ENSBIXG00005015894) ##21	WRAP73 (ENSBIXG00005015941)	TP73 (ENSBIXG00005016200) ##22	ENSBIXG00005016266	ENSBIXG00005016305	SMIM1 (ENSBIXG00005016324)	LRRC47 (ENSBIXG00005016351)	CEP104 (ENSBIXG00005016419)	DFFB (ENSBIXG00005002621)	ENSBIXG00005016454	AJAP1 (ENSBIXG00005016493)	NPHP4 (ENSBIXG00005016551)	KCNAB2 (ENSBIXG00005016637)	CHD5 (ENSBIXG00005002698)	RPL22 (ENSBIXG00005016703)	RNF207 (ENSBIXG00005016986)	ICMT (ENSBIXG00005017057)	HES3 (ENSBIXG00005017083)
Cow	MODERN SPECIES	7	RER1 (ENSBTAG00000009307)	PEX10 (ENSBTAG00000009309)	PLCH2 (ENSBTAG00000002464)	PANK4 (ENSBTAG00000002479)	HES5 (ENSBTAG00000002483)	PRXL2B (ENSBTAG00000001727)	MMEL1 (ENSBTAG00000009349)	ENSBTAG00000001642	ACTRT2 (ENSBTAG00000017929)	ENSBTAG00000051770	PRDM16 (ENSBTAG00000018965)	ARHGEF16 (ENSBTAG00000020837)	MEGF6 (ENSBTAG00000020839)	TPRG1L (ENSBTAG00000015857) ##21	WRAP73 (ENSBTAG00000015859)	TP73 (ENSBTAG00000005812) ##22	CCDC27 (ENSBTAG00000046007)	ENSBTAG00000054042	SMIM1 (ENSBTAG00000045754)	LRRC47 (ENSBTAG00000004738)	CEP104 (ENSBTAG00000020014)	DFFB (ENSBTAG00000020015)	C16H1orf174 (ENSBTAG00000024520)	AJAP1 (ENSBTAG00000000792)	NPHP4 (ENSBTAG00000008126)	KCNAB2 (ENSBTAG00000008125)	CHD5 (ENSBTAG00000040477)	RPL22 (ENSBTAG00000014423)	RNF207 (ENSBTAG00000009075)	ICMT (ENSBTAG00000048308)	ENSBTAG00000048433
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000161806	ENSGT00510000047137.f	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Domestic yak	MODERN SPECIES	5	MORN1 (ENSBGRG00000023627)	RER1 (ENSBGRG00000023590)	ENSBGRG00000023525	PLCH2 (ENSBGRG00000023211)	PANK4 (ENSBGRG00000022873)	HES5 (ENSBGRG00000022838)	PRXL2B (ENSBGRG00000022719)	MMEL1 (ENSBGRG00000022495)	ENSBGRG00000022379	ACTRT2 (ENSBGRG00000022341)	PRDM16 (ENSBGRG00000022048)	ARHGEF16 (ENSBGRG00000021812)	MEGF6 (ENSBGRG00000021194)	TPRG1L (ENSBGRG00000021077) ##21	WRAP73 (ENSBGRG00000020873)	TP73 (ENSBGRG00000020691) ##22	ENSBGRG00000020601	ENSBGRG00000020552	SMIM1 (ENSBGRG00000020530)	LRRC47 (ENSBGRG00000020443)	CEP104 (ENSBGRG00000020217)	DFFB (ENSBGRG00000020050)	C1orf174 (ENSBGRG00000019972)	AJAP1 (ENSBGRG00000019913)	NPHP4 (ENSBGRG00000019784)	KCNAB2 (ENSBGRG00000018783)	CHD5 (ENSBGRG00000018244)	ENSBGRG00000018140	RNF207 (ENSBGRG00000017584)	ICMT (ENSBGRG00000017392)	HES3 (ENSBGRG00000017309)
Wild yak	MODERN SPECIES	185	MORN1 (ENSBMUG00000023461)	RER1 (ENSBMUG00000023435)	ENSBMUG00000023405	PLCH2 (ENSBMUG00000023353)	PANK4 (ENSBMUG00000023214)	ENSBMUG00000023196	PRXL2B (ENSBMUG00000023178)	MMEL1 (ENSBMUG00000023151)	ENSBMUG00000023132	ACTRT2 (ENSBMUG00000023118)	PRDM16 (ENSBMUG00000023067)	ARHGEF16 (ENSBMUG00000022929)	MEGF6 (ENSBMUG00000022901)	TPRG1L (ENSBMUG00000022796) ##21	WRAP73 (ENSBMUG00000022788)	TP73 (ENSBMUG00000022687) ##22	ENSBMUG00000022569	ENSBMUG00000022558	SMIM1 (ENSBMUG00000022546)	LRRC47 (ENSBMUG00000022516)
American bison	MODERN SPECIES	3204	MORN1 (ENSBBBG00000017677)	RER1 (ENSBBBG00000017719)	ENSBBBG00000017732	PLCH2 (ENSBBBG00000017824)	PANK4 (ENSBBBG00000017861)	HES5 (ENSBBBG00000017867)	PRXL2B (ENSBBBG00000017922)	MMEL1 (ENSBBBG00000017952)	ENSBBBG00000017976	ACTRT2 (ENSBBBG00000017985)	PRDM16 (ENSBBBG00000018297)	ARHGEF16 (ENSBBBG00000018328)	MEGF6 (ENSBBBG00000018428)	ENSBBBG00000018440 ##21	WRAP73 (ENSBBBG00000004529)	TP73 (ENSBBBG00000018685) ##22	ENSBBBG00000004666	ENSBBBG00000018710	SMIM1 (ENSBBBG00000018717)	LRRC47 (ENSBBBG00000018727)	CEP104 (ENSBBBG00000004695)	DFFB (ENSBBBG00000004707)	C1orf174 (ENSBBBG00000018774)	AJAP1 (ENSBBBG00000018783)	NPHP4 (ENSBBBG00000018832)	KCNAB2 (ENSBBBG00000018996)	CHD5 (ENSBBBG00000019324)	RPL22 (ENSBBBG00000019345)	RNF207 (ENSBBBG00000019367)	ICMT (ENSBBBG00000005131)	HES3 (ENSBBBG00000019402)
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B.f	ENSGT00940000154171.B.e	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Rambouillet Sheep	MODERN SPECIES	3	SKI (ENSOARG00020007748)	MORN1 (ENSOARG00020007634)	RER1 (ENSOARG00020007578)	PEX10 (ENSOARG00020007513)	PLCH2 (ENSOARG00020006837)	PANK4 (ENSOARG00020006429)	HES5 (ENSOARG00020006401)	PRXL2B (ENSOARG00020006322)	MMEL1 (ENSOARG00020006179)	TTC34 (ENSOARG00020006071)	ACTRT2 (ENSOARG00020006052)	PRDM16 (ENSOARG00020005635)	ARHGEF16 (ENSOARG00020005527)	TPRG1L (ENSOARG00020003881) ##21	WRAP73 (ENSOARG00020003841)	TP73 (ENSOARG00020003397) ##22	ENSOARG00020003320	ENSOARG00020003274	SMIM1 (ENSOARG00020003254)	LRRC47 (ENSOARG00020003232)	DFFB (ENSOARG00020003201)	C1orf174 (ENSOARG00020003170)	AJAP1 (ENSOARG00020024365)	NPHP4 (ENSOARG00020024264)	KCNAB2 (ENSOARG00020023948)	CHD5 (ENSOARG00020023354)	RPL22 (ENSOARG00020023291)	RNF207 (ENSOARG00020023196)	ICMT (ENSOARG00020023166)	HES3 (ENSOARG00020023146)	GPR153 (ENSOARG00020023128)
Goat	MODERN SPECIES	7	MORN1 (ENSCHIG00000019762)	RER1 (ENSCHIG00000008023)	ENSCHIG00000019278	PLCH2 (ENSCHIG00000002050)	PANK4 (ENSCHIG00000018619)	HES5 (ENSCHIG00000021964)	PRXL2B (ENSCHIG00000013121)	MMEL1 (ENSCHIG00000025876)	ENSCHIG00000017247	ENSCHIG00000027163	PRDM16 (ENSCHIG00000017655)	ARHGEF16 (ENSCHIG00000027150)	MEGF6 (ENSCHIG00000019098)	TPRG1L (ENSCHIG00000007236) ##21	WRAP73 (ENSCHIG00000019139)	TP73 (ENSCHIG00000011122) ##22	CCDC27 (ENSCHIG00000022117)	SMIM1 (ENSCHIG00000013550)	LRRC47 (ENSCHIG00000022607)	CEP104 (ENSCHIG00000016637)	DFFB (ENSCHIG00000010505)	C1orf174 (ENSCHIG00000022147)	AJAP1 (ENSCHIG00000016472)	NPHP4 (ENSCHIG00000008748)	KCNAB2 (ENSCHIG00000022537)	CHD5 (ENSCHIG00000015027)	RPL22 (ENSCHIG00000024561)	RNF207 (ENSCHIG00000017554)	ICMT (ENSCHIG00000011865)	HES3 (ENSCHIG00000022936)	GPR153 (ENSCHIG00000015091)
Siberian musk deer	MODERN SPECIES	389	ENSMMSG00000012205	RER1 (ENSMMSG00000012231)	PEX10 (ENSMMSG00000012257)	PLCH2 (ENSMMSG00000012301)	PANK4 (ENSMMSG00000012395)	HES5 (ENSMMSG00000012496)	ENSMMSG00000012529	MMEL1 (ENSMMSG00000012601)	TTC34 (ENSMMSG00000012766)	ACTRT2 (ENSMMSG00000012891)	PRDM16 (ENSMMSG00000012912)	ARHGEF16 (ENSMMSG00000013253)	MEGF6 (ENSMMSG00000004741)	TPRG1L (ENSMMSG00000005159) ##21	WRAP73 (ENSMMSG00000005212)	TP73 (ENSMMSG00000005349) ##22	ENSMMSG00000005670	ENSMMSG00000005698	SMIM1 (ENSMMSG00000005735)	LRRC47 (ENSMMSG00000005754)	CEP104 (ENSMMSG00000005786)	DFFB (ENSMMSG00000005847)	C1orf174 (ENSMMSG00000005876)	AJAP1 (ENSMMSG00000005897)	NPHP4 (ENSMMSG00000005934)	KCNAB2 (ENSMMSG00000006138)	CHD5 (ENSMMSG00000006954)	RPL22 (ENSMMSG00000007170)	RNF207 (ENSMMSG00000007204)	ICMT (ENSMMSG00000007289)	HES3 (ENSMMSG00000007316)
Yarkand deer	MODERN SPECIES	5	RER1 (ENSCHYG00000026890)	ENSCHYG00000026862	PLCH2 (ENSCHYG00000026795)	PANK4 (ENSCHYG00000026707)	HES5 (ENSCHYG00000026669)	PRXL2B (ENSCHYG00000026618)	MMEL1 (ENSCHYG00000026544)	ENSCHYG00000026518	ENSCHYG00000026511	ACTRT2 (ENSCHYG00000026506)	PRDM16 (ENSCHYG00000026484)	ARHGEF16 (ENSCHYG00000026434)	MEGF6 (ENSCHYG00000025807)	TPRG1L (ENSCHYG00000025690) ##21	WRAP73 (ENSCHYG00000025638)	TP73 (ENSCHYG00000025502) ##22	ENSCHYG00000025453	ENSCHYG00000025345	SMIM1 (ENSCHYG00000025319)	LRRC47 (ENSCHYG00000025295)	CEP104 (ENSCHYG00000025105)	DFFB (ENSCHYG00000025029)	C1orf174 (ENSCHYG00000025002)	AJAP1 (ENSCHYG00000024985)	ENSCHYG00000024971	NPHP4 (ENSCHYG00000024882)	KCNAB2 (ENSCHYG00000024510)	CHD5 (ENSCHYG00000023533)	RPL22 (ENSCHYG00000023371)	RNF207 (ENSCHYG00000023102)	ENSCHYG00000023037
Cetacea	ANCESTRAL SPECIES		ENSGT00510000047137.c.a	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Blue whale	MODERN SPECIES		SKI (ENSBMSG00010002231)	ENSBMSG00010002275	ENSBMSG00010002349	PEX10 (ENSBMSG00010002377)	PANK4 (ENSBMSG00010002412)	HES5 (ENSBMSG00010002441)	PRXL2B (ENSBMSG00010002460)	MMEL1 (ENSBMSG00010002490)	TTC34 (ENSBMSG00010002546)	ACTRT2 (ENSBMSG00010002584)	PRDM16 (ENSBMSG00010002613)	ARHGEF16 (ENSBMSG00010002670)	MEGF6 (ENSBMSG00010002734)	TPRG1L (ENSBMSG00010002798) ##21	WRAP73 (ENSBMSG00010002825)	TP73 (ENSBMSG00010002957) ##22	CCDC27 (ENSBMSG00010003455)	SMIM1 (ENSBMSG00010003468)	LRRC47 (ENSBMSG00010003473)	CEP104 (ENSBMSG00010003486)	DFFB (ENSBMSG00010003496)	C1orf174 (ENSBMSG00010003503)	AJAP1 (ENSBMSG00010003512)	NPHP4 (ENSBMSG00010003527)	KCNAB2 (ENSBMSG00010003574)	CHD5 (ENSBMSG00010003755)	RPL22 (ENSBMSG00010003794)	RNF207 (ENSBMSG00010003807)	ICMT (ENSBMSG00010003819)	HES3 (ENSBMSG00010003830)	GPR153 (ENSBMSG00010003844)
Odontoceti	ANCESTRAL SPECIES		ENSGT00510000047137.c.a	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT01030000238854	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Sperm whale	MODERN SPECIES	14	FAAP20 (ENSPCTG00005001741)	SKI (ENSPCTG00005001725)	ENSPCTG00005001669	RER1 (ENSPCTG00005001629)	PEX10 (ENSPCTG00005001603)	PLCH2 (ENSPCTG00005001564)	PANK4 (ENSPCTG00005001529)	HES5 (ENSPCTG00005001513)	ENSPCTG00005001485	ACTRT2 (ENSPCTG00005001472)	PRDM16 (ENSPCTG00005001370)	ARHGEF16 (ENSPCTG00005001327)	MEGF6 (ENSPCTG00005001211)	TPRG1L (ENSPCTG00005001149) ##21	WRAP73 (ENSPCTG00005001121)	TP73 (ENSPCTG00005000955) ##22	CCDC27 (ENSPCTG00005000892)	SMIM1 (ENSPCTG00005000880)	LRRC47 (ENSPCTG00005000860)	CEP104 (ENSPCTG00005000771)	DFFB (ENSPCTG00005000740)	C3H1orf174 (ENSPCTG00005000728)	ENSPCTG00005000719	AJAP1 (ENSPCTG00005000707)	NPHP4 (ENSPCTG00005000683)	RNF207 (ENSPCTG00005000615)	RPL22 (ENSPCTG00005000548)	CHD5 (ENSPCTG00005000480)	KCNAB2 (ENSPCTG00005000460)	ACOT7 (ENSPCTG00005000395)	HES2 (ENSPCTG00005000330)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00510000047137.c.a	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT01030000238854	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Dolphin	MODERN SPECIES	738											PRDM16 (ENSTTRG00000003430)	ARHGEF16 (ENSTTRG00000003431)	MEGF6 (ENSTTRG00000003432)	TPRG1L (ENSTTRG00000003433) ##21	WRAP73 (ENSTTRG00000003434)	TP73 (ENSTTRG00000003435) ##22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00510000047137.c.a	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT01030000238854	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Vaquita	MODERN SPECIES		ENSPSNG00000002065	RER1 (ENSPSNG00000002099)	PEX10 (ENSPSNG00000002132)	PLCH2 (ENSPSNG00000002162)	PANK4 (ENSPSNG00000002240)	HES5 (ENSPSNG00000002299)	PRXL2B (ENSPSNG00000002328)	MMEL1 (ENSPSNG00000002378)	TTC34 (ENSPSNG00000002458)	ACTRT2 (ENSPSNG00000002514)	PRDM16 (ENSPSNG00000002594)	ARHGEF16 (ENSPSNG00000002826)	MEGF6 (ENSPSNG00000002891)	TPRG1L (ENSPSNG00000002985) ##21	WRAP73 (ENSPSNG00000003024)	TP73 (ENSPSNG00000003086) ##22	CCDC27 (ENSPSNG00000003190)	SMIM1 (ENSPSNG00000003211)	LRRC47 (ENSPSNG00000003227)	CEP104 (ENSPSNG00000003263)	DFFB (ENSPSNG00000003313)	C1orf174 (ENSPSNG00000003329)	AJAP1 (ENSPSNG00000003351)	ENSPSNG00000003368	NPHP4 (ENSPSNG00000003435)	KCNAB2 (ENSPSNG00000003547)	CHD5 (ENSPSNG00000003702)	RPL22 (ENSPSNG00000003761)	RNF207 (ENSPSNG00000003779)	ICMT (ENSPSNG00000003811)	HES3 (ENSPSNG00000003824)
Monodontidae	ANCESTRAL SPECIES		ENSGT00510000047137.c.a	ENSGT00510000048446	ENSGT01060000251465	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT01030000238854	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Beluga whale	MODERN SPECIES	51	RER1 (ENSDLEG00000006520)	ENSDLEG00000006510	ENSDLEG00000006493	PLCH2 (ENSDLEG00000006443)	PANK4 (ENSDLEG00000006429)	HES5 (ENSDLEG00000006422)	FAM213B (ENSDLEG00000006414)	MMEL1 (ENSDLEG00000006399)	TTC34 (ENSDLEG00000006388)	ACTRT2 (ENSDLEG00000006385)	PRDM16 (ENSDLEG00000006370)	ARHGEF16 (ENSDLEG00000006360)	MEGF6 (ENSDLEG00000009755)	TPRG1L (ENSDLEG00000009659) ##21	WRAP73 (ENSDLEG00000009563)	ENSDLEG00000009534 ##22	CCDC27 (ENSDLEG00000009486)	SMIM1 (ENSDLEG00000009466)	LRRC47 (ENSDLEG00000009442)	CEP104 (ENSDLEG00000009387)	DFFB (ENSDLEG00000009370)	CUNH1orf174 (ENSDLEG00000009347)	ENSDLEG00000009318	AJAP1 (ENSDLEG00000009280)	NPHP4 (ENSDLEG00000009070)	KCNAB2 (ENSDLEG00000008933)	CHD5 (ENSDLEG00000008536)	RPL22 (ENSDLEG00000008445)	RNF207 (ENSDLEG00000008050)	ICMT (ENSDLEG00000007923)	HES3 (ENSDLEG00000007911)
Narwhal	MODERN SPECIES	304	ENSMMNG00015016240	ENSMMNG00015016174	ENSMMNG00015016127	PLCH2 (ENSMMNG00015015993)	PANK4 (ENSMMNG00015015916)	HES5 (ENSMMNG00015015866)	PRXL2B (ENSMMNG00015015835)	MMEL1 (ENSMMNG00015015731)	TTC34 (ENSMMNG00015015636)	ACTRT2 (ENSMMNG00015015603)	PRDM16 (ENSMMNG00015015581)	ARHGEF16 (ENSMMNG00015015548)	MEGF6 (ENSMMNG00015015514)	TPRG1L (ENSMMNG00015015485) ##21	WRAP73 (ENSMMNG00015015452)	TP73 (ENSMMNG00015015334) ##22	CCDC27 (ENSMMNG00015015270)	SMIM1 (ENSMMNG00015015253)	LRRC47 (ENSMMNG00015015236)	CEP104 (ENSMMNG00015015185)	DFFB (ENSMMNG00015015154)	C1orf174 (ENSMMNG00015015134)	AJAP1 (ENSMMNG00015015123)	NPHP4 (ENSMMNG00015015012)	KCNAB2 (ENSMMNG00015014915)	CHD5 (ENSMMNG00015014860)	RPL22 (ENSMMNG00015014841)	RNF207 (ENSMMNG00015014802)	HES3 (ENSMMNG00015014786)	GPR153 (ENSMMNG00015014754)	ACOT7 (ENSMMNG00015014721)
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Glires	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Rodentia	ANCESTRAL SPECIES		ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Rodentia_B	ANCESTRAL SPECIES		ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Muroidea	ANCESTRAL SPECIES	3	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Cricetidae_B	ANCESTRAL SPECIES	30	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000029073	ENSPEMG00000019585	Aadacl4fm4 (ENSPEMG00000019566)	Aadacl4 (ENSPEMG00000019539)	Aadacl4fm2 (ENSPEMG00000019508)	Aadacl4fm1 (ENSPEMG00000019444)	Aadacl3 (ENSPEMG00000019428)	Cfap107 (ENSPEMG00000007054)	Pramel13 (ENSPEMG00000000362)	ENSPEMG00000023452	Prdm16 (ENSPEMG00000010972)	Arhgef16 (ENSPEMG00000011566)	Megf6 (ENSPEMG00000020683)	Tprgl (ENSPEMG00000020575) ##21	Wrap73 (ENSPEMG00000021358)	Trp73 (ENSPEMG00000020318) ##22	Ccdc27 (ENSPEMG00000004016)	Smim1 (ENSPEMG00000028594)	Lrrc47 (ENSPEMG00000021068)	Cep104 (ENSPEMG00000015109)	Dffb (ENSPEMG00000020570)	A430005L14Rik (ENSPEMG00000020619)	ENSPEMG00000025893
Prairie vole	MODERN SPECIES	121	Rer1 (ENSMOCG00000019879)	Pex10 (ENSMOCG00000015729)	Plch2 (ENSMOCG00000016001)	Pank4 (ENSMOCG00000016061)	Hes5 (ENSMOCG00000012587)	Tnfrsf14 (ENSMOCG00000017973)	Prxl2b (ENSMOCG00000003454)	Mmel1 (ENSMOCG00000019811)	Ttc34 (ENSMOCG00000006462)	Actrt2 (ENSMOCG00000002363)	Prdm16 (ENSMOCG00000017346)	Arhgef16 (ENSMOCG00000007705)	Megf6 (ENSMOCG00000017567)	Tprgl (ENSMOCG00000014008) ##21	Wrap73 (ENSMOCG00000011506)	Trp73 (ENSMOCG00000009005) ##22	Ccdc27 (ENSMOCG00000022851)	Smim1 (ENSMOCG00000002244)	Lrrc47 (ENSMOCG00000021279)	Cep104 (ENSMOCG00000015310)	Dffb (ENSMOCG00000014645)	A430005L14Rik (ENSMOCG00000015768)	Ajap1 (ENSMOCG00000016313)
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249.i	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Golden Hamster	MODERN SPECIES	707	Pex10 (ENSMAUG00000011441)	Plch2 (ENSMAUG00000010595)	Pank4 (ENSMAUG00000006368)	Hes5 (ENSMAUG00000019730)	ENSMAUG00000009380	Prxl2b (ENSMAUG00000008466)	Mmel1 (ENSMAUG00000002020)	Ttc34 (ENSMAUG00000013133)	Actrt2 (ENSMAUG00000010034)	Prdm16 (ENSMAUG00000015516)	Arhgef16 (ENSMAUG00000010145)	Megf6 (ENSMAUG00000018435)	Tprgl (ENSMAUG00000019986) ##21	Wrap73 (ENSMAUG00000002232)	ENSMAUG00000021905	ENSMAUG00000010480 ##22	Ccdc27 (ENSMAUG00000020562)	Smim1 (ENSMAUG00000021424)	Lrrc47 (ENSMAUG00000021337)	Cep104 (ENSMAUG00000008944)	Dffb (ENSMAUG00000008401)	A430005L14Rik (ENSMAUG00000001481)	Ajap1 (ENSMAUG00000002060)	Nphp4 (ENSMAUG00000001203)	Kcnab2 (ENSMAUG00000011947)	Chd5 (ENSMAUG00000015590)	Rpl22 (ENSMAUG00000001047)	Rnf207 (ENSMAUG00000018365)	Icmt (ENSMAUG00000003459)	Hes3 (ENSMAUG00000017157)	Gpr153 (ENSMAUG00000017691)
Chinese hamster chok1gshd	MODERN SPECIES	111	Rer1 (ENSCGRG00001007835)	Pex10 (ENSCGRG00001012170)	Plch2 (ENSCGRG00001014670)	Pank4 (ENSCGRG00001013559)	Hes5 (ENSCGRG00001019237)	Tnfrsf14 (ENSCGRG00001021526)	Prxl2b (ENSCGRG00001011082)	Mmel1 (ENSCGRG00001017259)	Ttc34 (ENSCGRG00001015000)	Actrt2 (ENSCGRG00001009403)	Prdm16 (ENSCGRG00001019996)	Arhgef16 (ENSCGRG00001024869)	Megf6 (ENSCGRG00001013362)	ENSCGRG00001003753 ##21	Wrap73 (ENSCGRG00001011691)	Trp73 (ENSCGRG00001024993) ##22	Ccdc27 (ENSCGRG00001016508)	Smim1 (ENSCGRG00001024815)	Lrrc47 (ENSCGRG00001015159)	Cep104 (ENSCGRG00001019492)	Dffb (ENSCGRG00001021674)	A430005L14Rik (ENSCGRG00001005878)	Ajap1 (ENSCGRG00001010003)	Rpl22 (ENSCGRG00001013766)	Rnf207 (ENSCGRG00001017607)	Icmt (ENSCGRG00001018284)	Hes3 (ENSCGRG00001018644)	Gpr153 (ENSCGRG00001019613)	Acot7 (ENSCGRG00001008186)	Hes2 (ENSCGRG00001016354)	ENSCGRG00001011145
Murinae	ANCESTRAL SPECIES	2	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Mus	ANCESTRAL SPECIES	3	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Mus_A	ANCESTRAL SPECIES	3	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00860000136239	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Mus_B	ANCESTRAL SPECIES	5	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00860000136239	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Mus_C	ANCESTRAL SPECIES	2	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00860000136239	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
spretus	MODERN SPECIES	13	Pex10 (MGP_SPRETEiJ_G0027875)	Plch2 (MGP_SPRETEiJ_G0027874)	Pank4 (MGP_SPRETEiJ_G0027873)	Hes5 (MGP_SPRETEiJ_G0027872)	Tnfrsf14 (MGP_SPRETEiJ_G0027871)	Prxl2b (MGP_SPRETEiJ_G0027870)	Mmel1 (MGP_SPRETEiJ_G0027869)	MGP_SPRETEiJ_G0027868	Actrt2 (MGP_SPRETEiJ_G0027867)	MGP_SPRETEiJ_G0027866	Prdm16 (MGP_SPRETEiJ_G0027865)	Arhgef16 (MGP_SPRETEiJ_G0027864)	Megf6 (MGP_SPRETEiJ_G0027863)	Tprgl (MGP_SPRETEiJ_G0027862) ##21	Wrap73 (MGP_SPRETEiJ_G0027861)	Trp73 (MGP_SPRETEiJ_G0027860) ##22	Ccdc27 (MGP_SPRETEiJ_G0027859)	Smim1 (MGP_SPRETEiJ_G0027858)	Lrrc47 (MGP_SPRETEiJ_G0027857)	Cep104 (MGP_SPRETEiJ_G0027856)	Dffb (MGP_SPRETEiJ_G0027855)	A430005L14Rik (MGP_SPRETEiJ_G0027854)	Ajap1 (MGP_SPRETEiJ_G0027853)	Nphp4 (MGP_SPRETEiJ_G0027852)	Kcnab2 (MGP_SPRETEiJ_G0027851)	Chd5 (MGP_SPRETEiJ_G0027850)	Rpl22 (MGP_SPRETEiJ_G0027849)	Rnf207 (MGP_SPRETEiJ_G0027848)	Icmt (MGP_SPRETEiJ_G0027847)	Hes3 (MGP_SPRETEiJ_G0027846)	Gpr153 (MGP_SPRETEiJ_G0027845)
Steppe mouse	MODERN SPECIES	3338	ENSMSIG00000016697	Plch2 (ENSMSIG00000016342)	Pank4 (ENSMSIG00000016251)	ENSMSIG00000016236	Tnfrsf14 (ENSMSIG00000016183)	Prxl2b (ENSMSIG00000016156)	Mmel1 (ENSMSIG00000015971)	ENSMSIG00000015948	Actrt2 (ENSMSIG00000015935)	ENSMSIG00000015908	Prdm16 (ENSMSIG00000015349)	Arhgef16 (ENSMSIG00000015285)	Megf6 (ENSMSIG00000015184)	ENSMSIG00000015161 ##21	Wrap73 (ENSMSIG00000015120)	Trp73 (ENSMSIG00000014841) ##22	Ccdc27 (ENSMSIG00000014782)	Smim1 (ENSMSIG00000014746)	ENSMSIG00000014737	Lrrc47 (ENSMSIG00000014708)	Cep104 (ENSMSIG00000014574)	Dffb (ENSMSIG00000014559)	A430005L14Rik (ENSMSIG00000014537)	Ajap1 (ENSMSIG00000014508)	ENSMSIG00000014502	Nphp4 (ENSMSIG00000014454)	Kcnab2 (ENSMSIG00000014214)	Chd5 (ENSMSIG00000013541)	ENSMSIG00000013479	Rnf207 (ENSMSIG00000013431)	Icmt (ENSMSIG00000013421)
Mouse	MODERN SPECIES	13	Rer1 (ENSMUSG00000029048)	Pex10 (ENSMUSG00000029047)	Plch2 (ENSMUSG00000029055)	Pank4 (ENSMUSG00000029056)	Hes5 (ENSMUSG00000048001)	Tnfrsf14 (ENSMUSG00000042333)	Prxl2b (ENSMUSG00000029059)	Mmel1 (ENSMUSG00000058183)	Ttc34 (ENSMUSG00000046637)	Actrt2 (ENSMUSG00000051276)	Prdm16 (ENSMUSG00000039410)	Arhgef16 (ENSMUSG00000029032)	Megf6 (ENSMUSG00000057751)	Tprgl (ENSMUSG00000029030) ##21	Wrap73 (ENSMUSG00000029029)	Trp73 (ENSMUSG00000029026) ##22	Ccdc27 (ENSMUSG00000039492)	Smim1 (ENSMUSG00000078350)	Lrrc47 (ENSMUSG00000029028)	Cep104 (ENSMUSG00000039523)	Dffb (ENSMUSG00000029027)	A430005L14Rik (ENSMUSG00000047613)	Ajap1 (ENSMUSG00000039546)	Nphp4 (ENSMUSG00000039577)	Kcnab2 (ENSMUSG00000028931)	Chd5 (ENSMUSG00000005045)	Rpl22 (ENSMUSG00000028936)	Rnf207 (ENSMUSG00000058498)	Icmt (ENSMUSG00000039662)	Hes3 (ENSMUSG00000028946)	Gpr153 (ENSMUSG00000042804)
Ryukyu mouse	MODERN SPECIES	13	Pex10 (MGP_CAROLIEiJ_G0026882)	Plch2 (MGP_CAROLIEiJ_G0026881)	Pank4 (MGP_CAROLIEiJ_G0026880)	Hes5 (MGP_CAROLIEiJ_G0026879)	Tnfrsf14 (MGP_CAROLIEiJ_G0026878)	Prxl2b (MGP_CAROLIEiJ_G0026877)	Mmel1 (MGP_CAROLIEiJ_G0026876)	MGP_CAROLIEiJ_G0026875	Actrt2 (MGP_CAROLIEiJ_G0026874)	MGP_CAROLIEiJ_G0026873	Prdm16 (MGP_CAROLIEiJ_G0026872)	Arhgef16 (MGP_CAROLIEiJ_G0026871)	Megf6 (MGP_CAROLIEiJ_G0026870)	Tprgl (MGP_CAROLIEiJ_G0026869) ##21	Wrap73 (MGP_CAROLIEiJ_G0026868)	Trp73 (MGP_CAROLIEiJ_G0026867) ##22	Ccdc27 (MGP_CAROLIEiJ_G0026866)	Smim1 (MGP_CAROLIEiJ_G0026865)	Lrrc47 (MGP_CAROLIEiJ_G0026864)	Cep104 (MGP_CAROLIEiJ_G0026863)	Dffb (MGP_CAROLIEiJ_G0026862)	A430005L14Rik (MGP_CAROLIEiJ_G0026861)	Ajap1 (MGP_CAROLIEiJ_G0026860)	Nphp4 (MGP_CAROLIEiJ_G0026859)	Kcnab2 (MGP_CAROLIEiJ_G0026858)	Chd5 (MGP_CAROLIEiJ_G0026857)	Rpl22 (MGP_CAROLIEiJ_G0026856)	Rnf207 (MGP_CAROLIEiJ_G0026855)	Icmt (MGP_CAROLIEiJ_G0026854)	Hes3 (MGP_CAROLIEiJ_G0026853)	Gpr153 (MGP_CAROLIEiJ_G0026852)
Shrew mouse	MODERN SPECIES	19	MGP_PahariEiJ_G0029230	Plch2 (MGP_PahariEiJ_G0029229)	Pank4 (MGP_PahariEiJ_G0029228)	Hes5 (MGP_PahariEiJ_G0029227)	Tnfrsf14 (MGP_PahariEiJ_G0029226)	Prxl2b (MGP_PahariEiJ_G0029225)	Mmel1 (MGP_PahariEiJ_G0029224)	MGP_PahariEiJ_G0029223	Actrt2 (MGP_PahariEiJ_G0029222)	MGP_PahariEiJ_G0029221	Prdm16 (MGP_PahariEiJ_G0029220)	MGP_PahariEiJ_G0029219	Megf6 (MGP_PahariEiJ_G0029218)	Tprgl (MGP_PahariEiJ_G0029217) ##21	Wrap73 (MGP_PahariEiJ_G0029216)	Trp73 (MGP_PahariEiJ_G0029215) ##22	Ccdc27 (MGP_PahariEiJ_G0029214)	Smim1 (MGP_PahariEiJ_G0029213)	Lrrc47 (MGP_PahariEiJ_G0029212)	Cep104 (MGP_PahariEiJ_G0029211)	Dffb (MGP_PahariEiJ_G0029210)	A430005L14Rik (MGP_PahariEiJ_G0029209)	Ajap1 (MGP_PahariEiJ_G0029208)	Nphp4 (MGP_PahariEiJ_G0029207)	MGP_PahariEiJ_G0029206	Chd5 (MGP_PahariEiJ_G0029205)	Rpl22 (MGP_PahariEiJ_G0029204)	Rnf207 (MGP_PahariEiJ_G0029203)	Icmt (MGP_PahariEiJ_G0029202)	Hes3 (MGP_PahariEiJ_G0029201)	Gpr153 (MGP_PahariEiJ_G0029200)
Rat	MODERN SPECIES	15	Morn1 (ENSRNOG00000014642)	Rer1 (ENSRNOG00000014270)	Pex10 (ENSRNOG00000024012)	Plch2 (ENSRNOG00000014226)	Pank4 (ENSRNOG00000014044)	Hes5 (ENSRNOG00000013850)	Tnfrsf14 (ENSRNOG00000013820)	Mmel1 (ENSRNOG00000012593)	Ttc34 (ENSRNOG00000024526)	Actrt2 (ENSRNOG00000012586)	Prdm16 (ENSRNOG00000045913)	Arhgef16 (ENSRNOG00000046803)	Megf6 (ENSRNOG00000000156)	Tprg1l (ENSRNOG00000046227) ##21	Wrap73 (ENSRNOG00000014805)	Tp73 (ENSRNOG00000024707) ##22	Ccdc27 (ENSRNOG00000056358)	Lrrc47 (ENSRNOG00000024796)	Cep104 (ENSRNOG00000025000)	Dffb (ENSRNOG00000025030)	C5h1orf174 (ENSRNOG00000025034)	ENSRNOG00000070793	Ajap1 (ENSRNOG00000050137)	Nphp4 (ENSRNOG00000011967)	ENSRNOG00000023112	Kcnab2 (ENSRNOG00000011550)	Chd5 (ENSRNOG00000011268)	Rpl22 (ENSRNOG00000069581)	Rnf207 (ENSRNOG00000033722)	Icmt (ENSRNOG00000010953)	Hes3 (ENSRNOG00000010893)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1641	Morn1 (ENSNGAG00000022850)	ENSNGAG00000008216	Pex10 (ENSNGAG00000013758)	Plch2 (ENSNGAG00000020057)	Pank4 (ENSNGAG00000021587)	Hes5 (ENSNGAG00000021962)	Prxl2b (ENSNGAG00000022242)	Mmel1 (ENSNGAG00000024063)	Ttc34 (ENSNGAG00000011533)	Actrt2 (ENSNGAG00000011337)	Prdm16 (ENSNGAG00000020527)	Arhgef16 (ENSNGAG00000008485)	Megf6 (ENSNGAG00000021615)	Tprgl (ENSNGAG00000019137) ##21	Wrap73 (ENSNGAG00000022384)	Trp73 (ENSNGAG00000023696) ##22	Ccdc27 (ENSNGAG00000000893)	Smim1 (ENSNGAG00000003956)	Lrrc47 (ENSNGAG00000022153)	Cep104 (ENSNGAG00000023692)	Dffb (ENSNGAG00000024308)	A430005L14Rik (ENSNGAG00000010909)
Lesser Egyptian jerboa	MODERN SPECIES	63	Rer1 (ENSJJAG00000018634)	Pex10 (ENSJJAG00000017321)	Plch2 (ENSJJAG00000020118)	Pank4 (ENSJJAG00000018242)	Hes5 (ENSJJAG00000017831)	Tnfrsf14 (ENSJJAG00000021255)	Prxl2b (ENSJJAG00000018745)	Mmel1 (ENSJJAG00000018082)	Ttc34 (ENSJJAG00000016707)	Actrt2 (ENSJJAG00000005857)	Prdm16 (ENSJJAG00000001571)	Arhgef16 (ENSJJAG00000017609)	Megf6 (ENSJJAG00000023287)	Tprgl (ENSJJAG00000016930) ##21	Wrap73 (ENSJJAG00000017311)	Trp73 (ENSJJAG00000016220) ##22	Ccdc27 (ENSJJAG00000021071)	Smim1 (ENSJJAG00000023020)	Lrrc47 (ENSJJAG00000017474)	Cep104 (ENSJJAG00000017892)	Dffb (ENSJJAG00000014494)	A430005L14Rik (ENSJJAG00000015979)	Ajap1 (ENSJJAG00000017197)	Nphp4 (ENSJJAG00000019994)	Kcnab2 (ENSJJAG00000017395)	Chd5 (ENSJJAG00000019072)	ENSJJAG00000015204	Rnf207 (ENSJJAG00000023554)	Icmt (ENSJJAG00000015170)	Hes3 (ENSJJAG00000015707)	Gpr153 (ENSJJAG00000017999)
Kangaroo rat	MODERN SPECIES	325	Ski (ENSDORG00000010193)	Morn1 (ENSDORG00000010194)	Rer1 (ENSDORG00000010196)	Pex10 (ENSDORG00000010197)	Plch2 (ENSDORG00000002772)	Pank4 (ENSDORG00000002776)	ENSDORG00000027384	Mmel1 (ENSDORG00000010046)	Ttc34 (ENSDORG00000000265)	Actrt2 (ENSDORG00000003841)	Prdm16 (ENSDORG00000008385)	Arhgef16 (ENSDORG00000008390)	Megf6 (ENSDORG00000008394)	Tprgl (ENSDORG00000006564) ##21	Wrap73 (ENSDORG00000006565)	Trp73 (ENSDORG00000014845) ##22	Ccdc27 (ENSDORG00000016593)	Smim1 (ENSDORG00000029605)	Lrrc47 (ENSDORG00000016594)	Cep104 (ENSDORG00000016599)	Dffb (ENSDORG00000016602)	A430005L14Rik (ENSDORG00000027225)	Ajap1 (ENSDORG00000001663)	Nphp4 (ENSDORG00000014532)	Kcnab2 (ENSDORG00000005922)	Chd5 (ENSDORG00000005923)	Rpl22 (ENSDORG00000023255)	Rnf207 (ENSDORG00000025693)	Icmt (ENSDORG00000005187)	ENSDORG00000005189	Acot7 (ENSDORG00000012934)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00510000048446	ENSGT01060000251964	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00990000205429	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Marmotini	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Marmotini_b	ANCESTRAL SPECIES	81	ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496
Arctic ground squirrel	MODERN SPECIES	564										ACTRT2 (ENSUPAG00010013082)	PRDM16 (ENSUPAG00010013091)	ARHGEF16 (ENSUPAG00010013185)	MEGF6 (ENSUPAG00010013210)	TPRG1L (ENSUPAG00010013260) ##21	WRAP73 (ENSUPAG00010013289)	TP73 (ENSUPAG00010013315) ##22	ENSUPAG00010013361	SMIM1 (ENSUPAG00010013406)	LRRC47 (ENSUPAG00010013421)	CEP104 (ENSUPAG00010013437)	DFFB (ENSUPAG00010013485)	ENSUPAG00010013501
Squirrel	MODERN SPECIES	337	GABRD (ENSSTOG00000028473)	PRKCZ (ENSSTOG00000012801)	SKI (ENSSTOG00000022893)	RER1 (ENSSTOG00000007413)	PEX10 (ENSSTOG00000007428)	PLCH2 (ENSSTOG00000026564)	PANK4 (ENSSTOG00000013425)	HES5 (ENSSTOG00000020897)	PRXL2B (ENSSTOG00000003960)	MMEL1 (ENSSTOG00000003984)	ACTRT2 (ENSSTOG00000026986)	PRDM16 (ENSSTOG00000020440)	ARHGEF16 (ENSSTOG00000024026)	ENSSTOG00000007466 ##21	WRAP73 (ENSSTOG00000007481)	TP73 (ENSSTOG00000029194) ##22	SMIM1 (ENSSTOG00000020388)	LRRC47 (ENSSTOG00000027559)	CEP104 (ENSSTOG00000004128)	DFFB (ENSSTOG00000004167)
Alpin marmot	MODERN SPECIES	73	MORN1 (ENSMMMG00000019043)	RER1 (ENSMMMG00000019040)	PEX10 (ENSMMMG00000019038)	ENSMMMG00000018967	PANK4 (ENSMMMG00000018933)	ENSMMMG00000018925	PRXL2B (ENSMMMG00000018906)	MMEL1 (ENSMMMG00000018721)	ENSMMMG00000018716	ACTRT2 (ENSMMMG00000018703)	PRDM16 (ENSMMMG00000018678)	ARHGEF16 (ENSMMMG00000018653)	MEGF6 (ENSMMMG00000018617)	TPRG1L (ENSMMMG00000018599) ##21	WRAP73 (ENSMMMG00000018591)	TP73 (ENSMMMG00000018532) ##22	CCDC27 (ENSMMMG00000018503)	SMIM1 (ENSMMMG00000018496)	LRRC47 (ENSMMMG00000018476)	CEP104 (ENSMMMG00000018452)	DFFB (ENSMMMG00000018370)	C1orf174 (ENSMMMG00000018358)	AJAP1 (ENSMMMG00000018349)	NPHP4 (ENSMMMG00000018267)	KCNAB2 (ENSMMMG00000018161)	CHD5 (ENSMMMG00000018048)	RPL22 (ENSMMMG00000018042)	RNF207 (ENSMMMG00000018024)	ICMT (ENSMMMG00000018006)	HES3 (ENSMMMG00000018001)	ENSMMMG00000017994
Eurasian red squirrel	MODERN SPECIES		PEX10 (ENSSVLG00005000064)	ENSSVLG00005000069	PLCH2 (ENSSVLG00005000075)	PANK4 (ENSSVLG00005000078)	HES5 (ENSSVLG00005000079)	ENSSVLG00005000080	PRXL2B (ENSSVLG00005000081)	MMEL1 (ENSSVLG00005000083)	ENSSVLG00005000084	ACTRT2 (ENSSVLG00005000085)	PRDM16 (ENSSVLG00005000086)	ARHGEF16 (ENSSVLG00005000087)	MEGF6 (ENSSVLG00005000091)	TPRG1L (ENSSVLG00005000096) ##21	WRAP73 (ENSSVLG00005000098)	TP73 (ENSSVLG00005000108) ##22	ENSSVLG00005000129	ENSSVLG00005000137	SMIM1 (ENSSVLG00005000145)	LRRC47 (ENSSVLG00005000150)	CEP104 (ENSSVLG00005000156)	DFFB (ENSSVLG00005000163)	C1orf174 (ENSSVLG00005000175)	AJAP1 (ENSSVLG00005000185)	NPHP4 (ENSSVLG00005000223)	KCNAB2 (ENSSVLG00005000447)	CHD5 (ENSSVLG00005000641)	RPL22 (ENSSVLG00005000734)	RNF207 (ENSSVLG00005000758)	ICMT (ENSSVLG00005000794)	HES3 (ENSSVLG00005000815)
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229
Naked mole-rat female	MODERN SPECIES	26	Rer1 (ENSHGLG00000035840)	ENSHGLG00000017056	PLCH2 (ENSHGLG00000017046)	PANK4 (ENSHGLG00000017036)	HES5 (ENSHGLG00000047246)	ENSHGLG00000034235	ENSHGLG00000018766	MMEL1 (ENSHGLG00000018747)	ENSHGLG00000035811	ACTRT2 (ENSHGLG00000021430)	PRDM16 (ENSHGLG00000018989)	ARHGEF16 (ENSHGLG00000015445)	MEGF6 (ENSHGLG00000015418)	TPRG1L (ENSHGLG00000044138) ##21	WRAP73 (ENSHGLG00000015372)	TP73 (ENSHGLG00000015349) ##22	ENSHGLG00000018304	SMIM1 (ENSHGLG00000041010)	LRRC47 (ENSHGLG00000018278)	CEP104 (ENSHGLG00000019097)	DFFB (ENSHGLG00000019012)	C1orf174 (ENSHGLG00000019128)	AJAP1 (ENSHGLG00000019414)	ENSHGLG00000035042	NPHP4 (ENSHGLG00000018629)	KCNAB2 (ENSHGLG00000018215)	CHD5 (ENSHGLG00000018184)	RPL22 (ENSHGLG00000036729)	ICMT (ENSHGLG00000036555)	HES3 (ENSHGLG00000035079)	GPR153 (ENSHGLG00000009347)
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229
Hystricomorpha_b	ANCESTRAL SPECIES	47	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427.i	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229
Long-tailed chinchilla	MODERN SPECIES	193	RER1 (ENSCLAG00000004419)	PEX10 (ENSCLAG00000010114)	PLCH2 (ENSCLAG00000014474)	PANK4 (ENSCLAG00000006749)	HES5 (ENSCLAG00000006249)	ENSCLAG00000005555	PRXL2B (ENSCLAG00000004683)	MMEL1 (ENSCLAG00000005873)	ENSCLAG00000005188	ACTRT2 (ENSCLAG00000017641)	PRDM16 (ENSCLAG00000011378)	ARHGEF16 (ENSCLAG00000007871)	MEGF6 (ENSCLAG00000007080)	TPRG1L (ENSCLAG00000010071) ##21	WRAP73 (ENSCLAG00000008882)	TP73 (ENSCLAG00000004583) ##22	ENSCLAG00000006385	SMIM1 (ENSCLAG00000007118)	LRRC47 (ENSCLAG00000006093)	CEP104 (ENSCLAG00000007114)	DFFB (ENSCLAG00000006574)	C1orf174 (ENSCLAG00000008931)	AJAP1 (ENSCLAG00000007853)	NPHP4 (ENSCLAG00000006014)	KCNAB2 (ENSCLAG00000011302)	CHD5 (ENSCLAG00000010589)	RPL22 (ENSCLAG00000007350)	ICMT (ENSCLAG00000006904)	HES3 (ENSCLAG00000006579)	GPR153 (ENSCLAG00000013035)	ACOT7 (ENSCLAG00000012294)
Degu	MODERN SPECIES	154	RER1 (ENSODEG00000009663)	PEX10 (ENSODEG00000009998)	PLCH2 (ENSODEG00000009322)	PANK4 (ENSODEG00000014680)	HES5 (ENSODEG00000009552)	ENSODEG00000009852	PRXL2B (ENSODEG00000010975)	MMEL1 (ENSODEG00000010714)	TTC34 (ENSODEG00000010598)	ACTRT2 (ENSODEG00000019932)	PRDM16 (ENSODEG00000010377)	ARHGEF16 (ENSODEG00000010411)	MEGF6 (ENSODEG00000009785)	TPRG1L (ENSODEG00000010589) ##21	WRAP73 (ENSODEG00000010067)	TP73 (ENSODEG00000009639) ##22	SMIM1 (ENSODEG00000010084)	LRRC47 (ENSODEG00000010882)	CEP104 (ENSODEG00000011932)	DFFB (ENSODEG00000011068)	C1orf174 (ENSODEG00000010932)	AJAP1 (ENSODEG00000010357)	ENSODEG00000011221	KCNAB2 (ENSODEG00000010109)	CHD5 (ENSODEG00000010262)	ENSODEG00000010475	ICMT (ENSODEG00000012278)	HES3 (ENSODEG00000011898)	GPR153 (ENSODEG00000013746)	ENSODEG00000011743	HES2 (ENSODEG00000011291)
Guinea pig	MODERN SPECIES	25											PRDM16 (ENSCPOG00000011498)	ARHGEF16 (ENSCPOG00000023427)	MEGF6 (ENSCPOG00000011143)	TPRG1L (ENSCPOG00000005028) ##21	WRAP73 (ENSCPOG00000004308)	TP73 (ENSCPOG00000010908) ##22	ENSCPOG00000002778	SMIM1 (ENSCPOG00000031381)	LRRC47 (ENSCPOG00000014931)	CEP104 (ENSCPOG00000005825)	DFFB (ENSCPOG00000000301)	C1orf174 (ENSCPOG00000030695)	AJAP1 (ENSCPOG00000035912)	NPHP4 (ENSCPOG00000001792)	KCNAB2 (ENSCPOG00000002893)	CHD5 (ENSCPOG00000025080)	RPL22 (ENSCPOG00000020139)	ICMT (ENSCPOG00000040804)	HES3 (ENSCPOG00000026623)	GPR153 (ENSCPOG00000020707)	ACOT7 (ENSCPOG00000012951)
Primates	ANCESTRAL SPECIES	4	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Mouse lemur	MODERN SPECIES	11	MORN1 (ENSMICG00000016425)	RER1 (ENSMICG00000016433)	PEX10 (ENSMICG00000016440)	PLCH2 (ENSMICG00000001008)	PANK4 (ENSMICG00000001015)	HES5 (ENSMICG00000038417)	ENSMICG00000047725	ENSMICG00000041564	ENSMICG00000001384	TTC34 (ENSMICG00000037123)	PRDM16 (ENSMICG00000004807)	ARHGEF16 (ENSMICG00000035816)	MEGF6 (ENSMICG00000041971)	TPRG1L (ENSMICG00000011701) ##21	WRAP73 (ENSMICG00000011706)	TP73 (ENSMICG00000037331) ##22	CCDC27 (ENSMICG00000013210)	SMIM1 (ENSMICG00000031346)	LRRC47 (ENSMICG00000026816)	ENSMICG00000048094	CEP104 (ENSMICG00000000549)	ENSMICG00000030205	C1orf174 (ENSMICG00000033991)	IGSF21 (ENSMICG00000008593)	ENSMICG00000003958	IFFO2 (ENSMICG00000031817)	ALDH4A1 (ENSMICG00000012040)	TAS1R2 (ENSMICG00000012039)	PAX7 (ENSMICG00000016256)	ACTL8 (ENSMICG00000014146)	ARHGEF10L (ENSMICG00000014120)
Lemuriformes_a	ANCESTRAL SPECIES	7								ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Coquerels sifaka	MODERN SPECIES	804																TP73 (ENSPCOG00000018161) ##22	CCDC27 (ENSPCOG00000022071)	SMIM1 (ENSPCOG00000019746)	LRRC47 (ENSPCOG00000019161)	CEP104 (ENSPCOG00000017436)	DFFB (ENSPCOG00000013801)	C1orf174 (ENSPCOG00000009557)	AJAP1 (ENSPCOG00000019073)
Greater bamboo lemur	MODERN SPECIES	728															WRAP73 (ENSPSMG00000002125)	TP73 (ENSPSMG00000001634) ##22	CCDC27 (ENSPSMG00000001332)	SMIM1 (ENSPSMG00000001303)	LRRC47 (ENSPSMG00000001295)
Bushbaby	MODERN SPECIES	182	RER1 (ENSOGAG00000001472)	PEX10 (ENSOGAG00000030407)	PLCH2 (ENSOGAG00000010474)	PANK4 (ENSOGAG00000010479)	HES5 (ENSOGAG00000030950)	TNFRSF14 (ENSOGAG00000025899)	PRXL2B (ENSOGAG00000031630)	MMEL1 (ENSOGAG00000003810)	ENSOGAG00000031793	ACTRT2 (ENSOGAG00000011109)	PRDM16 (ENSOGAG00000005055)	ARHGEF16 (ENSOGAG00000005057)	MEGF6 (ENSOGAG00000005058)	TPRG1L (ENSOGAG00000026682) ##21	WRAP73 (ENSOGAG00000010919)	TP73 (ENSOGAG00000006041) ##22	CCDC27 (ENSOGAG00000026784)	SMIM1 (ENSOGAG00000008688)	LRRC47 (ENSOGAG00000001553)	CEP104 (ENSOGAG00000011334)	DFFB (ENSOGAG00000011337)	C1orf174 (ENSOGAG00000033420)	ENSOGAG00000028382	NPHP4 (ENSOGAG00000006776)	KCNAB2 (ENSOGAG00000005697)	CHD5 (ENSOGAG00000005703)	RPL22 (ENSOGAG00000014776)	RNF207 (ENSOGAG00000027952)	ICMT (ENSOGAG00000001698)	HES3 (ENSOGAG00000024336)	GPR153 (ENSOGAG00000030161)
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Tarsier	MODERN SPECIES	6300														TPRG1L (ENSTSYG00000009892) ##21	WRAP73 (ENSTSYG00000009893)	TP73 (ENSTSYG00000033622) ##22	CCDC27 (ENSTSYG00000028910)	SMIM1 (ENSTSYG00000026490)	LRRC47 (ENSTSYG00000009326)	CEP104 (ENSTSYG00000003203)	DFFB (ENSTSYG00000029537)	C1orf174 (ENSTSYG00000010726)
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Platyrrhini	ANCESTRAL SPECIES		ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00390000010391.w.a.b	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Cebidae	ANCESTRAL SPECIES	1	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00390000010391.w.a.b	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Marmoset	MODERN SPECIES	19	ENSCJAG00000081871	PEX10 (ENSCJAG00000002487)	PLCH2 (ENSCJAG00000002498)	PANK4 (ENSCJAG00000002520)	HES5 (ENSCJAG00000002549)	ENSCJAG00000002555	PRXL2B (ENSCJAG00000002562)	MMEL1 (ENSCJAG00000002584)	TTC34 (ENSCJAG00000002648)	ACTRT2 (ENSCJAG00000022478)	PRDM16 (ENSCJAG00000002653)	ARHGEF16 (ENSCJAG00000002662)	MEGF6 (ENSCJAG00000002676)	TPRG1L (ENSCJAG00000002752) ##21	WRAP73 (ENSCJAG00000002757)	TP73 (ENSCJAG00000002773) ##22	ENSCJAG00000072225	CCDC27 (ENSCJAG00000002791)	ENSCJAG00000072875	LRRC47 (ENSCJAG00000002819)	CEP104 (ENSCJAG00000002820)	DFFB (ENSCJAG00000002834)	C1orf174 (ENSCJAG00000002869)	ENSCJAG00000017416	ENSCJAG00000080966	AJAP1 (ENSCJAG00000026490)	NPHP4 (ENSCJAG00000000076)	KCNAB2 (ENSCJAG00000000086)	CHD5 (ENSCJAG00000000101)	RPL22 (ENSCJAG00000081575)	ICMT (ENSCJAG00000000150)
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000161806	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00390000010391.w.a.b	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.b	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Capuchin	MODERN SPECIES	145	MORN1 (ENSCCAG00000032696)	RER1 (ENSCCAG00000023091)	PEX10 (ENSCCAG00000030157)	PLCH2 (ENSCCAG00000029040)	PANK4 (ENSCCAG00000027608)	HES5 (ENSCCAG00000026993)	TNFRSF14 (ENSCCAG00000021088)	PRXL2B (ENSCCAG00000022548)	MMEL1 (ENSCCAG00000025075)	TTC34 (ENSCCAG00000026375)	PRDM16 (ENSCCAG00000023990)	ARHGEF16 (ENSCCAG00000023323)	MEGF6 (ENSCCAG00000031233)	TPRG1L (ENSCCAG00000027031) ##21	WRAP73 (ENSCCAG00000031039)	TP73 (ENSCCAG00000028250) ##22	CCDC27 (ENSCCAG00000024889)	SMIM1 (ENSCCAG00000023125)	LRRC47 (ENSCCAG00000024895)	CEP104 (ENSCCAG00000024268)	ENSCCAG00000033827	C1orf174 (ENSCCAG00000029954)	ENSCCAG00000028103	ENSCCAG00000029591	AJAP1 (ENSCCAG00000022884)	ENSCCAG00000020116	ENSCCAG00000000163	NPHP4 (ENSCCAG00000022712)	KCNAB2 (ENSCCAG00000030976)	CHD5 (ENSCCAG00000024756)
Bolivian squirrel monkey	MODERN SPECIES	158	SKI (ENSSBOG00000021523)	MORN1 (ENSSBOG00000027258)	RER1 (ENSSBOG00000027418)	PEX10 (ENSSBOG00000018670)	PLCH2 (ENSSBOG00000026081)	PANK4 (ENSSBOG00000035066)	TNFRSF14 (ENSSBOG00000026871)	PRXL2B (ENSSBOG00000031802)	MMEL1 (ENSSBOG00000024396)	TTC34 (ENSSBOG00000031203)	PRDM16 (ENSSBOG00000024634)	ARHGEF16 (ENSSBOG00000028236)	MEGF6 (ENSSBOG00000027097)	ENSSBOG00000023600 ##21	WRAP73 (ENSSBOG00000018983)	TP73 (ENSSBOG00000022097) ##22	CCDC27 (ENSSBOG00000032221)	SMIM1 (ENSSBOG00000027431)	LRRC47 (ENSSBOG00000026334)	CEP104 (ENSSBOG00000031132)	DFFB (ENSSBOG00000024360)	C1orf174 (ENSSBOG00000025001)	ENSSBOG00000028879	AJAP1 (ENSSBOG00000007439)	ENSSBOG00000025073	NPHP4 (ENSSBOG00000034455)	KCNAB2 (ENSSBOG00000026250)	CHD5 (ENSSBOG00000001955)	ENSSBOG00000025881	RNF207 (ENSSBOG00000028206)	ICMT (ENSSBOG00000025066)
Mas night monkey	MODERN SPECIES	1132	RER1 (ENSANAG00000030574)	PEX10 (ENSANAG00000033477)	PLCH2 (ENSANAG00000031937)	PANK4 (ENSANAG00000026315)	HES5 (ENSANAG00000025628)	TNFRSF14 (ENSANAG00000027044)	ENSANAG00000025584	PRXL2B (ENSANAG00000034373)	MMEL1 (ENSANAG00000019115)	TTC34 (ENSANAG00000028232)	PRDM16 (ENSANAG00000029221)	ARHGEF16 (ENSANAG00000028547)	MEGF6 (ENSANAG00000025543)	TPRG1L (ENSANAG00000025652) ##21	WRAP73 (ENSANAG00000033709)	TP73 (ENSANAG00000031097) ##22	CCDC27 (ENSANAG00000021331)	SMIM1 (ENSANAG00000028581)	LRRC47 (ENSANAG00000025576)	CEP104 (ENSANAG00000022315)	ENSANAG00000021018	C1orf174 (ENSANAG00000023356)	ENSANAG00000020340	AJAP1 (ENSANAG00000027182)
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00910000148740	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00910000148740	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623.a.b	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00910000148740	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623.b	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490.c	ENSGT00390000016496	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00910000148740	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Cercopithecinae_d	ANCESTRAL SPECIES	42	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623.b	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490.c	ENSGT00390000016496	ENSGT00910000147431	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00910000148740	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394
Drill	MODERN SPECIES	980									PRDM16 (ENSMLEG00000033731)	ENSMLEG00000025630	ARHGEF16 (ENSMLEG00000033945)	MEGF6 (ENSMLEG00000034121)	ENSMLEG00000025291	ENSMLEG00000035085 ##21	WRAP73 (ENSMLEG00000000286)	TP73 (ENSMLEG00000026397) ##22	CCDC27 (ENSMLEG00000029777)	SMIM1 (ENSMLEG00000031932)	LRRC47 (ENSMLEG00000043735)	CEP104 (ENSMLEG00000041738)	DFFB (ENSMLEG00000024065)	C1orf174 (ENSMLEG00000034653)	ENSMLEG00000027245	AJAP1 (ENSMLEG00000036841)
Sooty mangabey	MODERN SPECIES	225	PEX10 (ENSCATG00000030283)	PLCH2 (ENSCATG00000011583)	PANK4 (ENSCATG00000037649)	HES5 (ENSCATG00000042925)	TNFRSF14 (ENSCATG00000030781)	PRXL2B (ENSCATG00000038131)	MMEL1 (ENSCATG00000021301)	TTC34 (ENSCATG00000027432)	PRDM16 (ENSCATG00000036368)	ENSCATG00000022706	ARHGEF16 (ENSCATG00000033713)	MEGF6 (ENSCATG00000030024)	ENSCATG00000018410	TPRG1L (ENSCATG00000029139) ##21	WRAP73 (ENSCATG00000041975)	TP73 (ENSCATG00000038079) ##22	CCDC27 (ENSCATG00000045045)	SMIM1 (ENSCATG00000019007)	LRRC47 (ENSCATG00000029337)	CEP104 (ENSCATG00000044748)	DFFB (ENSCATG00000005364)	C1orf174 (ENSCATG00000032678)
Olive baboon	MODERN SPECIES		RER1 (ENSPANG00000021945)	PEX10 (ENSPANG00000018380)	PLCH2 (ENSPANG00000019039)	PANK4 (ENSPANG00000012486)	HES5 (ENSPANG00000022730)	ENSPANG00000020403	ENSPANG00000019038	MMEL1 (ENSPANG00000015981)	ENSPANG00000009324	ACTRT2 (ENSPANG00000024738)	PRDM16 (ENSPANG00000000780)	ARHGEF16 (ENSPANG00000006401)	MEGF6 (ENSPANG00000009524)	TPRG1L (ENSPANG00000009812) ##21	WRAP73 (ENSPANG00000012483)	TP73 (ENSPANG00000010294) ##22	CCDC27 (ENSPANG00000012874)	SMIM1 (ENSPANG00000010293)	LRRC47 (ENSPANG00000012437)	CEP104 (ENSPANG00000021631)	DFFB (ENSPANG00000016780)	C1orf174 (ENSPANG00000008198)	AJAP1 (ENSPANG00000014738)	NPHP4 (ENSPANG00000009081)	KCNAB2 (ENSPANG00000008514)	CHD5 (ENSPANG00000006765)	RPL22 (ENSPANG00000018031)	RNF207 (ENSPANG00000010648)	ICMT (ENSPANG00000008513)	HES3 (ENSPANG00000020174)	GPR153 (ENSPANG00000022146)
Macaca	ANCESTRAL SPECIES		ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623.a.a	ENSGT00390000003623.a.b	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Macaca_a	ANCESTRAL SPECIES		ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623.a.a	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.b.b.a.c	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482
Rhesus	MODERN SPECIES		RER1 (ENSMMUG00000012346)	PEX10 (ENSMMUG00000012348)	PLCH2 (ENSMMUG00000014682)	PANK4 (ENSMMUG00000014686)	HES5 (ENSMMUG00000063558)	TNFRSF14 (ENSMMUG00000016329)	PRXL2B (ENSMMUG00000012380)	MMEL1 (ENSMMUG00000012381)	TTC34 (ENSMMUG00000048622)	ACTRT2 (ENSMMUG00000012334)	PRDM16 (ENSMMUG00000009350)	ENSMMUG00000056100	ARHGEF16 (ENSMMUG00000009354)	MEGF6 (ENSMMUG00000009358)	WRAP73 (ENSMMUG00000003786)	TP73 (ENSMMUG00000016569) ##22	CCDC27 (ENSMMUG00000013591)	SMIM1 (ENSMMUG00000038836)	LRRC47 (ENSMMUG00000032284)	DFFB (ENSMMUG00000015174)	CEP104 (ENSMMUG00000015173)	C1H1orf174 (ENSMMUG00000015176)	AJAP1 (ENSMMUG00000059970)	ENSMMUG00000063427	ENSMMUG00000056766	NPHP4 (ENSMMUG00000022888)	KCNAB2 (ENSMMUG00000016837)	CHD5 (ENSMMUG00000016838)	RPL22 (ENSMMUG00000018347)	RNF207 (ENSMMUG00000038166)	ENSMMUG00000058992
Crab-eating macaque	MODERN SPECIES		PLCH2 (ENSMFAG00000040083)	PANK4 (ENSMFAG00000001007)	HES5 (ENSMFAG00000044681)	ENSMFAG00000059221	ENSMFAG00000042470	ENSMFAG00000065056	ENSMFAG00000065681	MMEL1 (ENSMFAG00000041432)	ENSMFAG00000030925	ACTRT2 (ENSMFAG00000008800)	PRDM16 (ENSMFAG00000036508)	ARHGEF16 (ENSMFAG00000046261)	MEGF6 (ENSMFAG00000036723)	TPRG1L (ENSMFAG00000037093) ##21	WRAP73 (ENSMFAG00000001728)	TP73 (ENSMFAG00000043807) ##22	CCDC27 (ENSMFAG00000039059)	SMIM1 (ENSMFAG00000041475)	LRRC47 (ENSMFAG00000045730)	CEP104 (ENSMFAG00000041467)	DFFB (ENSMFAG00000001539)	C1orf174 (ENSMFAG00000043364)	AJAP1 (ENSMFAG00000053605)	ENSMFAG00000054237	ENSMFAG00000042278	KCNAB2 (ENSMFAG00000035522)	CHD5 (ENSMFAG00000033993)	ENSMFAG00000028034	RNF207 (ENSMFAG00000032368)	ICMT (ENSMFAG00000031889)	GPR153 (ENSMFAG00000038267)
Pig-tailed macaque	MODERN SPECIES	235	PLCH2 (ENSMNEG00000039376)	PANK4 (ENSMNEG00000028432)	HES5 (ENSMNEG00000043589)	TNFRSF14 (ENSMNEG00000005219)	PRXL2B (ENSMNEG00000037754)	MMEL1 (ENSMNEG00000035260)	TTC34 (ENSMNEG00000029683)	ACTRT2 (ENSMNEG00000038311)	PRDM16 (ENSMNEG00000028486)	ENSMNEG00000007354	ARHGEF16 (ENSMNEG00000031880)	MEGF6 (ENSMNEG00000036080)	ENSMNEG00000045255	TPRG1L (ENSMNEG00000033012) ##21	WRAP73 (ENSMNEG00000009222)	TP73 (ENSMNEG00000035635) ##22	CCDC27 (ENSMNEG00000036525)	SMIM1 (ENSMNEG00000044053)	LRRC47 (ENSMNEG00000042488)	CEP104 (ENSMNEG00000035953)	DFFB (ENSMNEG00000041040)	C1orf174 (ENSMNEG00000009614)	ENSMNEG00000010682
Vervet Monkey	MODERN SPECIES	12	MORN1 (ENSCSAG00000000710)	RER1 (ENSCSAG00000000711)	PEX10 (ENSCSAG00000000712)	PLCH2 (ENSCSAG00000000713)	PANK4 (ENSCSAG00000000714)	HES5 (ENSCSAG00000000715)	TNFRSF14 (ENSCSAG00000000716)	PRXL2B (ENSCSAG00000000717)	MMEL1 (ENSCSAG00000000718)	ENSCSAG00000000719	ACTRT2 (ENSCSAG00000000634)	ENSCSAG00000000720	PRDM16 (ENSCSAG00000000721)	TPRG1L (ENSCSAG00000000722) ##21	WRAP73 (ENSCSAG00000000723)	TP73 (ENSCSAG00000000724) ##22	CCDC27 (ENSCSAG00000000725)	SMIM1 (ENSCSAG00000000726)	LRRC47 (ENSCSAG00000000727)	CEP104 (ENSCSAG00000000728)	C1orf174 (ENSCSAG00000000729)	AJAP1 (ENSCSAG00000000730)	NPHP4 (ENSCSAG00000000731)	ENSCSAG00000000635	KCNAB2 (ENSCSAG00000000732)	CHD5 (ENSCSAG00000000733)	ENSCSAG00000000734	RNF207 (ENSCSAG00000000735)	ICMT (ENSCSAG00000000736)	HES3 (ENSCSAG00000000737)	GPR153 (ENSCSAG00000000738)
Rhinopithecus	ANCESTRAL SPECIES	52	ENSGT00510000047137	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00910000147431	ENSGT00510000048586
Black snub-nosed monkey	MODERN SPECIES	705	PEX10 (ENSRBIG00000043078)	PLCH2 (ENSRBIG00000031208)	PANK4 (ENSRBIG00000040811)	HES5 (ENSRBIG00000036888)	TNFRSF14 (ENSRBIG00000043978)	PRXL2B (ENSRBIG00000034383)	MMEL1 (ENSRBIG00000027895)	TTC34 (ENSRBIG00000043272)	PRDM16 (ENSRBIG00000037838)	ENSRBIG00000042115	ARHGEF16 (ENSRBIG00000029683)	MEGF6 (ENSRBIG00000029960)	ENSRBIG00000034805	ENSRBIG00000044382 ##21	WRAP73 (ENSRBIG00000015568)	TP73 (ENSRBIG00000032568) ##22	CCDC27 (ENSRBIG00000008814)	SMIM1 (ENSRBIG00000045008)	LRRC47 (ENSRBIG00000019437)	CEP104 (ENSRBIG00000040106)	DFFB (ENSRBIG00000027931)	C1orf174 (ENSRBIG00000043326)	ENSRBIG00000029915	AJAP1 (ENSRBIG00000042381)
Golden snub-nosed monkey	MODERN SPECIES	598									PRDM16 (ENSRROG00000019908)	ENSRROG00000040269	ARHGEF16 (ENSRROG00000035476)	MEGF6 (ENSRROG00000001633)	ENSRROG00000032869 ##21	ENSRROG00000029736	WRAP73 (ENSRROG00000036624)	TP73 (ENSRROG00000044643) ##22	CCDC27 (ENSRROG00000015851)	SMIM1 (ENSRROG00000029242)	LRRC47 (ENSRROG00000043182)	CEP104 (ENSRROG00000033195)	DFFB (ENSRROG00000044090)	C1orf174 (ENSRROG00000036910)	AJAP1 (ENSRROG00000036661)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00910000147926	ENSGT00390000017394	ENSGT00730000111482
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00910000147926	ENSGT00390000017394	ENSGT00730000111482
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00910000148439	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00910000147926	ENSGT00390000017394	ENSGT00730000111482
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00910000148439	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00910000147926	ENSGT00390000017394	ENSGT00730000111482
Pan	ANCESTRAL SPECIES		ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00910000148439	ENSGT00940000160951	ENSGT00910000146952	ENSGT01030000234571.a.b	ENSGT00940000156971.B.ab	ENSGT00910000146899	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00520000060291	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00910000147926	ENSGT00390000017394	ENSGT00730000111482
Chimpanzee	MODERN SPECIES		PANK4 (ENSPTRG00000000052)	HES5 (ENSPTRG00000024233)	TNFRSF14 (ENSPTRG00000000053)	PRXL2B (ENSPTRG00000000054)	MMEL1 (ENSPTRG00000000055)	TTC34 (ENSPTRG00000033888)	ACTRT2 (ENSPTRG00000000057)	ENSPTRG00000044415	PRDM16 (ENSPTRG00000000059)	ENSPTRG00000050952	ARHGEF16 (ENSPTRG00000000060)	MEGF6 (ENSPTRG00000045016)	ENSPTRG00000052696	TPRG1L (ENSPTRG00000000063) ##21	WRAP73 (ENSPTRG00000000064)	TP73 (ENSPTRG00000000062) ##22	CCDC27 (ENSPTRG00000000067)	SMIM1 (ENSPTRG00000050245)	LRRC47 (ENSPTRG00000000068)	CEP104 (ENSPTRG00000000069)	DFFB (ENSPTRG00000000070)	C1H1orf174 (ENSPTRG00000024207)	AJAP1 (ENSPTRG00000000072)	ENSPTRG00000050114	ENSPTRG00000044476	NPHP4 (ENSPTRG00000048943)	KCNAB2 (ENSPTRG00000052739)	CHD5 (ENSPTRG00000000075)	RPL22 (ENSPTRG00000000076)	RNF207 (ENSPTRG00000000078)	ICMT (ENSPTRG00000000079)
Bonobo	MODERN SPECIES		RER1 (ENSPPAG00000031180)	PEX10 (ENSPPAG00000033932)	PLCH2 (ENSPPAG00000032779)	PANK4 (ENSPPAG00000023688)	TNFRSF14 (ENSPPAG00000041295)	ENSPPAG00000026553	MMEL1 (ENSPPAG00000033061)	TTC34 (ENSPPAG00000043335)	ACTRT2 (ENSPPAG00000006845)	ENSPPAG00000018220	PRDM16 (ENSPPAG00000030373)	ARHGEF16 (ENSPPAG00000022572)	ENSPPAG00000026930	ENSPPAG00000034643 ##21	WRAP73 (ENSPPAG00000037359)	TP73 (ENSPPAG00000036965) ##22	CCDC27 (ENSPPAG00000035974)	SMIM1 (ENSPPAG00000029577)	ENSPPAG00000036370	CEP104 (ENSPPAG00000028267)	DFFB (ENSPPAG00000011470)	C1orf174 (ENSPPAG00000031126)	ENSPPAG00000023885	AJAP1 (ENSPPAG00000042959)	ENSPPAG00000009974	NPHP4 (ENSPPAG00000026077)	KCNAB2 (ENSPPAG00000027250)	CHD5 (ENSPPAG00000034048)	RPL22 (ENSPPAG00000001865)	RNF207 (ENSPPAG00000031421)	ENSPPAG00000028335
Human	MODERN SPECIES		RER1 (ENSG00000157916)	PEX10 (ENSG00000157911)	PLCH2 (ENSG00000149527)	PANK4 (ENSG00000157881)	HES5 (ENSG00000197921)	TNFRSF14 (ENSG00000157873)	PRXL2B (ENSG00000157870)	MMEL1 (ENSG00000142606)	TTC34 (ENSG00000215912)	ACTRT2 (ENSG00000169717)	PRDM16 (ENSG00000142611)	ARHGEF16 (ENSG00000130762)	MEGF6 (ENSG00000162591)	TPRG1L (ENSG00000158109) ##21	WRAP73 (ENSG00000116213)	TP73 (ENSG00000078900) ##22	CCDC27 (ENSG00000162592)	SMIM1 (ENSG00000235169)	LRRC47 (ENSG00000130764)	CEP104 (ENSG00000116198)	DFFB (ENSG00000169598)	C1orf174 (ENSG00000198912)	AJAP1 (ENSG00000196581)	NPHP4 (ENSG00000131697)	KCNAB2 (ENSG00000069424)	CHD5 (ENSG00000116254)	RPL22 (ENSG00000116251)	RNF207 (ENSG00000158286)	ICMT (ENSG00000116237)	HES3 (ENSG00000173673)	GPR153 (ENSG00000158292)
Gorilla	MODERN SPECIES		PLCH2 (ENSGGOG00000010243)	PANK4 (ENSGGOG00000010260)	HES5 (ENSGGOG00000010276)	ENSGGOG00000026108	PRXL2B (ENSGGOG00000010282)	MMEL1 (ENSGGOG00000010290)	TTC34 (ENSGGOG00000007020)	ACTRT2 (ENSGGOG00000014163)	ENSGGOG00000038529	PRDM16 (ENSGGOG00000003763)	ARHGEF16 (ENSGGOG00000034940)	MEGF6 (ENSGGOG00000015536)	ENSGGOG00000036854	ENSGGOG00000015547 ##21	WRAP73 (ENSGGOG00000015553)	TP73 (ENSGGOG00000015559) ##22	CCDC27 (ENSGGOG00000015568)	SMIM1 (ENSGGOG00000038289)	LRRC47 (ENSGGOG00000015571)	CEP104 (ENSGGOG00000013439)	DFFB (ENSGGOG00000013452)	C1orf174 (ENSGGOG00000013459)	AJAP1 (ENSGGOG00000000632)	NPHP4 (ENSGGOG00000016992)	ENSGGOG00000024665	ENSGGOG00000000707	CHD5 (ENSGGOG00000000708)	RPL22 (ENSGGOG00000027739)	RNF207 (ENSGGOG00000000709)	ENSGGOG00000042903	ENSGGOG00000005058
Orangutan	MODERN SPECIES		RER1 (ENSPPYG00000038006)	PEX10 (ENSPPYG00000001979)	PLCH2 (ENSPPYG00000001978)	PANK4 (ENSPPYG00000001977)	HES5 (ENSPPYG00000030505)	TNFRSF14 (ENSPPYG00000001976)	PRXL2B (ENSPPYG00000001974)	MMEL1 (ENSPPYG00000001973)	TTC34 (ENSPPYG00000001971)	ACTRT2 (ENSPPYG00000001970)	PRDM16 (ENSPPYG00000001968)	ARHGEF16 (ENSPPYG00000001967)	MEGF6 (ENSPPYG00000001966)	TPRG1L (ENSPPYG00000001965) ##21	WRAP73 (ENSPPYG00000001964)	TP73 (ENSPPYG00000001963) ##22	CCDC27 (ENSPPYG00000001961)	LRRC47 (ENSPPYG00000001960)	CEP104 (ENSPPYG00000001959)	DFFB (ENSPPYG00000040598)	C1orf174 (ENSPPYG00000001957)	AJAP1 (ENSPPYG00000001956)	NPHP4 (ENSPPYG00000001955)	KCNAB2 (ENSPPYG00000001953)	CHD5 (ENSPPYG00000001952)	ENSPPYG00000031575	ICMT (ENSPPYG00000041506)	HES3 (ENSPPYG00000001947)	GPR153 (ENSPPYG00000001946)	ACOT7 (ENSPPYG00000001945)	HES2 (ENSPPYG00000032305)
Gibbon	MODERN SPECIES	16	RER1 (ENSNLEG00000030586)	PEX10 (ENSNLEG00000000198)	PLCH2 (ENSNLEG00000000217)	PANK4 (ENSNLEG00000000237)	ENSNLEG00000035876	MMEL1 (ENSNLEG00000000255)	TTC34 (ENSNLEG00000000272)	ACTRT2 (ENSNLEG00000000275)	PRDM16 (ENSNLEG00000008079)	ENSNLEG00000033810	ENSNLEG00000008083	ENSNLEG00000033048	ENSNLEG00000031101	TPRG1L (ENSNLEG00000008085) ##21	WRAP73 (ENSNLEG00000008086)	ENSNLEG00000008091 ##22	CCDC27 (ENSNLEG00000008114)	SMIM1 (ENSNLEG00000008127)	LRRC47 (ENSNLEG00000008131)	CEP104 (ENSNLEG00000008136)	ENSNLEG00000008141	C1orf174 (ENSNLEG00000008148)	AJAP1 (ENSNLEG00000008149)	NPHP4 (ENSNLEG00000010289)	KCNAB2 (ENSNLEG00000010301)	CHD5 (ENSNLEG00000010320)	RPL22 (ENSNLEG00000010337)	RNF207 (ENSNLEG00000010347)	ICMT (ENSNLEG00000032475)	ENSNLEG00000028510	ENSNLEG00000029984
Atlantogenata	ANCESTRAL SPECIES	4	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.d	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.`b.a	ENSGT00940000156971.B.`b.b	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000183153.c.b.a.b ##22
Armadillo	MODERN SPECIES	2351																TP73 (ENSDNOG00000039510) ##22
Afrotheria	ANCESTRAL SPECIES	14	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.c.a	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.`b.a	ENSGT00940000156971.B.`b.b	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Tenrec	MODERN SPECIES	8056																ENSETEG00000008817 ##22
Afrotheria_a	ANCESTRAL SPECIES	14	ENSGT00510000048446	ENSGT00940000158374	ENSGT00940000158896	ENSGT00940000162836	ENSGT00940000162427	ENSGT00940000162566	ENSGT00940000157799	ENSGT00390000003047.c.a	ENSGT00940000162911	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B.`b.a	ENSGT00940000156971.B.`b.b	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00940000154171.B	ENSGT00530000063489.b	ENSGT00390000013405	ENSGT00390000014490	ENSGT00390000016496	ENSGT00510000048586	ENSGT00510000048827	ENSGT00940000168544	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.a.b.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00730000111482	ENSGT00390000017213.B
Elephant	MODERN SPECIES	270	PEX10 (ENSLAFG00000006717)	PLCH2 (ENSLAFG00000031674)	PANK4 (ENSLAFG00000007137)	HES5 (ENSLAFG00000005276)	ENSLAFG00000004448	PRXL2B (ENSLAFG00000022536)	MMEL1 (ENSLAFG00000008660)	ENSLAFG00000020870	ACTRT2 (ENSLAFG00000001300)	PRDM16 (ENSLAFG00000001071)	ARHGEF16 (ENSLAFG00000010069)	ENSLAFG00000026286	ENSLAFG00000027959	TPRG1L (ENSLAFG00000004203) ##21	WRAP73 (ENSLAFG00000004206)	TP73 (ENSLAFG00000007013) ##22	CCDC27 (ENSLAFG00000011650)	LRRC47 (ENSLAFG00000011657)	CEP104 (ENSLAFG00000003363)	DFFB (ENSLAFG00000017058)	C1orf174 (ENSLAFG00000011634)	AJAP1 (ENSLAFG00000001724)	ENSLAFG00000014790	ENSLAFG00000027326	ENSLAFG00000027161	KCNAB2 (ENSLAFG00000015930)	CHD5 (ENSLAFG00000006348)	RPL22 (ENSLAFG00000006352)	RNF207 (ENSLAFG00000006256)	ICMT (ENSLAFG00000006353)	ENSLAFG00000006355
Hyrax	MODERN SPECIES	7478																TP73 (ENSPCAG00000000703) ##22	ENSPCAG00000000756
Platypus	MODERN SPECIES	16	CAMK2N1 (ENSOANG00000040741)	VWA5B1 (ENSOANG00000015183)	ENSOANG00000049966	CDK7 (ENSOANG00000001543)	ENSOANG00000042726	MMEL1 (ENSOANG00000019803)	ENSOANG00000007655	ENSOANG00000015993	ACTRT2 (ENSOANG00000006693)	ENSOANG00000038134	PRDM16 (ENSOANG00000048561)	ARHGEF16 (ENSOANG00000040785)	MEGF6 (ENSOANG00000014412)	TPRG1L (ENSOANG00000009741) ##21	WRAP73 (ENSOANG00000009742)	TP73 (ENSOANG00000048923) ##22	ENSOANG00000041141	ENSOANG00000049548	SMIM1 (ENSOANG00000049976)	LRRC47 (ENSOANG00000022668)	CEP104 (ENSOANG00000036180)	DFFB (ENSOANG00000013652)	ENSOANG00000013653	AJAP1 (ENSOANG00000029758)	NPHP4 (ENSOANG00000009896)	KCNAB2 (ENSOANG00000008263)	CHD5 (ENSOANG00000001819)	RPL22 (ENSOANG00000045349)	RNF207 (ENSOANG00000022287)	ICMT (ENSOANG00000002730)	ENSOANG00000007139
Anura	ANCESTRAL SPECIES	14		ENSGT00950000182832.A	ENSGT00940000162814	ENSGT00940000160527	ENSGT00730000111394	ENSGT01060000248581.C	ENSGT01100000263521.a.b.a.a.c.g.a	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003047	ENSGT00940000160951	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000049583	ENSGT00940000160817	ENSGT00940000158192	ENSGT00940000155203	ENSGT00860000133842	ENSGT00530000063882.a	ENSGT00940000158631	ENSGT00940000158981	ENSGT00940000163190.c.b.b	ENSGT00940000163190.c.b.a.a	ENSGT00940000163190.c.b.a.b	ENSGT00940000163190.d	ENSGT00940000163190.c.a.b	ENSGT00940000161264	ENSGT00940000153668.A
Frog	MODERN SPECIES	7	ENSXETG00000043403	ENSXETG00000021233	zbtb45 (ENSXETG00000021232)	ENSXETG00000043816	ENSXETG00000037680	ENSXETG00000045316	ENSXETG00000021241	prxl2b (ENSXETG00000021242)	mmel1 (ENSXETG00000021243)	ttc34 (ENSXETG00000021244)	prdm16 (ENSXETG00000012050)	arhgef16 (ENSXETG00000005005)	megf6 (ENSXETG00000005008)	tprg1l (ENSXETG00000005015) ##21	wrap73 (ENSXETG00000005016)	tp73 (ENSXETG00000005019) ##22	uts2 (ENSXETG00000036577)	per3 (ENSXETG00000005028)	vamp3 (ENSXETG00000025515)	camta1 (ENSXETG00000005040)	dnajc11 (ENSXETG00000011143)	phf13 (ENSXETG00000011141)	klhl21 (ENSXETG00000011114)	zbtb48 (ENSXETG00000011113)	hes5.10 (ENSXETG00000011111)	hes5.9 (ENSXETG00000011112)	hes5.5 (ENSXETG00000025522)	hes5.7 (ENSXETG00000037211)	hes5.4 (ENSXETG00000032670)	hes5.3 (ENSXETG00000011110)	nol9 (ENSXETG00000031086)
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000013234	ENSLLEG00000013217	ENSLLEG00000012907	ENSLLEG00000012865	ENSLLEG00000012846	PRDM16 (ENSLLEG00000012728)	ENSLLEG00000012697	ENSLLEG00000012673	ARHGEF16 (ENSLLEG00000012446)	MEGF6 (ENSLLEG00000011955)	ENSLLEG00000011903	ENSLLEG00000011879	ENSLLEG00000011862	TPRG1L (ENSLLEG00000011830) ##21	WRAP73 (ENSLLEG00000011742)	TP73 (ENSLLEG00000011276) ##22	ENSLLEG00000011066	ENSLLEG00000011032	UTS2 (ENSLLEG00000010990)	PER3 (ENSLLEG00000010907)	VAMP3 (ENSLLEG00000010830)	CAMTA1 (ENSLLEG00000010601)	ENSLLEG00000010554	ENSLLEG00000010538	ENSLLEG00000010521	DNAJC11 (ENSLLEG00000010102)	PHF13 (ENSLLEG00000010013)	KLHL21 (ENSLLEG00000009899)	ZBTB48 (ENSLLEG00000009774)	ENSLLEG00000009715	ENSLLEG00000009618
Coelacanth	MODERN SPECIES	223	CCNL2 (ENSLACG00000018904)	ENSLACG00000018919	ENSLACG00000018925	ENSLACG00000018927	prxl2b (ENSLACG00000018935)	MMEL1 (ENSLACG00000018939)	TTC34 (ENSLACG00000018948)	ENSLACG00000018960	ENSLACG00000018979	ENSLACG00000018993	PRDM16 (ENSLACG00000019020)	ARHGEF16 (ENSLACG00000019031)	MEGF6 (ENSLACG00000019035)	TPRG1L (ENSLACG00000019063) ##21	WRAP73 (ENSLACG00000019065)	TP73 (ENSLACG00000019068) ##22	ENSLACG00000019076	ENSLACG00000019078	CCDC27 (ENSLACG00000019080)	SMIM1 (ENSLACG00000022094)	LRRC47 (ENSLACG00000019083)	b3gnt7l (ENSLACG00000019085)	CEP104 (ENSLACG00000019086)	DFFB (ENSLACG00000019091)	RPL13A (ENSLACG00000019092)	C1orf174 (ENSLACG00000019095)	AJAP1 (ENSLACG00000019109)	NPHP4 (ENSLACG00000019123)	ENSLACG00000019124	GABRD (ENSLACG00000019125)	ENSLACG00000019126
Actinopterygii	ANCESTRAL SPECIES	74	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000165349	ENSGT00390000012265	ENSGT00940000160951	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000156971.B	ENSGT00940000158496	ENSGT00390000006238	ENSGT00390000002461	ENSGT00600000084471	ENSGT00510000046803.a	ENSGT00560000077335
Neopterygii	ANCESTRAL SPECIES	28	ENSGT00940000158374	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00970000197149	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b
Osteoglossocephalai	ANCESTRAL SPECIES	21	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00970000197149	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000172767	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000012058.c.b	ENSGT00940000154171.A	ENSGT01030000234528.B.a.a.b.a
Clupeocephala	ANCESTRAL SPECIES	114	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00970000197149	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000012265	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000172767	ENSGT00940000154721	ENSGT00390000009368
Otomorpha	ANCESTRAL SPECIES	198	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000012265	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137
Clupeiformes	ANCESTRAL SPECIES	118	ENSGT00940000163942.b	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136
Denticle herring	MODERN SPECIES	1	ENSDCDG00000017153	si:ch211-251b21.1 (ENSDCDG00000017155)	plch2a (ENSDCDG00000017158)	pex10 (ENSDCDG00000017163)	mthfr (ENSDCDG00000017175)	CLCN6 (ENSDCDG00000017587)	ENSDCDG00000017594	ENSDCDG00000017596	ENSDCDG00000017600	si:dkeyp-104h9.5 (ENSDCDG00000017607)	plod1a (ENSDCDG00000017733)	mfn2 (ENSDCDG00000021481)	ENSDCDG00000021644	TPRG1L (ENSDCDG00000021757) ##21	wrap73 (ENSDCDG00000021760)	tp73 (ENSDCDG00000021852) ##22	rer1 (ENSDCDG00000021860)	tas1r2.1 (ENSDCDG00000021866)	ENSDCDG00000022000	ENSDCDG00000022004	ENSDCDG00000022010	ENSDCDG00000022013	irf10 (ENSDCDG00000022018)	bmp7b (ENSDCDG00000022023)	spo11 (ENSDCDG00000022047)	rbm38 (ENSDCDG00000022053)	mipb (ENSDCDG00000022056)	ENSDCDG00000022059	baz2a (ENSDCDG00000022065)	ptges3b (ENSDCDG00000022076)	naca (ENSDCDG00000022082)
Atlantic herring	MODERN SPECIES	20	ENSCHAG00000020495	ENSCHAG00000020506	zgc:195245 (ENSCHAG00000020542)	si:ch211-163l21.7 (ENSCHAG00000020551)	ELAPOR1 (ENSCHAG00000020561)	mapk14b (ENSCHAG00000020731)	srpk1a (ENSCHAG00000021374)	lhfpl5b (ENSCHAG00000022011)	ENSCHAG00000022034	cpne5a (ENSCHAG00000022051)	dclre1b (ENSCHAG00000022202)	ENSCHAG00000022216	ENSCHAG00000022283	TPRG1L (ENSCHAG00000022297) ##21	wrap73 (ENSCHAG00000022313)	tp73 (ENSCHAG00000022349) ##22	rer1 (ENSCHAG00000022408)	ENSCHAG00000022436	ENSCHAG00000022683	ENSCHAG00000022907	ENSCHAG00000023125	adora1b (ENSCHAG00000023190)	ENSCHAG00000023193	mfn2 (ENSCHAG00000000163)	ENSCHAG00000000245	ENSCHAG00000000287	ENSCHAG00000000291	ENSCHAG00000000297	ENSCHAG00000000318	ENSCHAG00000000327	ENSCHAG00000000833
Otophysi	ANCESTRAL SPECIES	279	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000012265	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137
Characiphysae	ANCESTRAL SPECIES	69	ENSGT00940000163942.b	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000154285.a.b.b.b
Channel catfish	MODERN SPECIES	24	rpl6 (ENSIPUG00000020213)	dynll1 (ENSIPUG00000020243)	ENSIPUG00000020259	acaa2 (ENSIPUG00000020272)	Mrpl40 (ENSIPUG00000020288)	vsig8b (ENSIPUG00000020301)	snrnp200 (ENSIPUG00000020309)	ENSIPUG00000020358	ENSIPUG00000020477	ENSIPUG00000020484	ENSIPUG00000020499	mfn2 (ENSIPUG00000020537)	prdm16 (ENSIPUG00000020607)	TPRG1L (ENSIPUG00000020672) ##21	wrap73 (ENSIPUG00000020690)	tp73 (ENSIPUG00000020714) ##22	rer1 (ENSIPUG00000020737)	ENSIPUG00000020781	ENSIPUG00000020850	ENSIPUG00000020860	ENSIPUG00000020868	plod1 (ENSIPUG00000020902)	kiaa2013 (ENSIPUG00000020958)	ENSIPUG00000020963	nppal (ENSIPUG00000020972)	nppa (ENSIPUG00000020976)	ENSIPUG00000020993	clcn6 (ENSIPUG00000020997)	mthfr (ENSIPUG00000021093)	PEX10 (ENSIPUG00000021121)	plch2 (ENSIPUG00000021140)
Characiphysae_b	ANCESTRAL SPECIES	68	ENSGT00940000163942.b	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000154285.a.b.b.b
Characoidei	ANCESTRAL SPECIES	137	ENSGT00940000163942.b	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000154285.a.b.b.b
Red-bellied piranha	MODERN SPECIES	113	plch2a (ENSPNAG00000027654)	pex10 (ENSPNAG00000027535)	mthfr (ENSPNAG00000006779)	CLCN6 (ENSPNAG00000027451)	ENSPNAG00000027308	ENSPNAG00000005960	ENSPNAG00000007095	nppal (ENSPNAG00000027283)	ENSPNAG00000027276	si:dkeyp-104h9.5 (ENSPNAG00000007093)	plod1a (ENSPNAG00000004781)	mfn2 (ENSPNAG00000027163)	ENSPNAG00000027070	TPRG1L (ENSPNAG00000005607) ##21	wrap73 (ENSPNAG00000004151)	tp73 (ENSPNAG00000026888) ##22	rer1 (ENSPNAG00000026747)	ENSPNAG00000026732	ENSPNAG00000006740
Mexicana tetra	MODERN SPECIES	21	si:ch211-251b21.1 (ENSAMXG00000014272)	plch2a (ENSAMXG00000014239)	pex10 (ENSAMXG00000032150)	mthfr (ENSAMXG00000014200)	CLCN6 (ENSAMXG00000014154)	ENSAMXG00000036240	ENSAMXG00000031663	nppal (ENSAMXG00000040400)	ENSAMXG00000043996	si:dkeyp-104h9.5 (ENSAMXG00000014079)	plod1a (ENSAMXG00000014065)	mfn2 (ENSAMXG00000014050)	ENSAMXG00000014024	TPRG1L (ENSAMXG00000014000) ##21	wrap73 (ENSAMXG00000013970)	tp73 (ENSAMXG00000036294) ##22	rer1 (ENSAMXG00000040315)	ENSAMXG00000013939	chmp4bb (ENSAMXG00000030415)	eif2s2 (ENSAMXG00000034753)	cyc1 (ENSAMXG00000013515)	YWHAB (ENSAMXG00000040342)	pabpc1l (ENSAMXG00000013552)	FMOD (ENSAMXG00000037943)	mapkapk2b (ENSAMXG00000013599)	eif2d (ENSAMXG00000038035)	ENSAMXG00000034310	ENSAMXG00000012967	rh50 (ENSAMXG00000012958)	rh50 (ENSAMXG00000039215)	rbm39b (ENSAMXG00000012946)
Electric eel	MODERN SPECIES	167	dpp9 (ENSEEEG00000003283)	si:ch211-251b21.1 (ENSEEEG00000003281)	plch2a (ENSEEEG00000003276)	pex10 (ENSEEEG00000003275)	mthfr (ENSEEEG00000003273)	CLCN6 (ENSEEEG00000002452)	ENSEEEG00000002411	ENSEEEG00000002409	nppal (ENSEEEG00000002407)	si:dkeyp-104h9.5 (ENSEEEG00000002406)	plod1a (ENSEEEG00000001523)	mfn2 (ENSEEEG00000001265)	ENSEEEG00000001252	TPRG1L (ENSEEEG00000001250) ##21	wrap73 (ENSEEEG00000001241)	tp73 (ENSEEEG00000001236) ##22	rer1 (ENSEEEG00000001229)
Cyprinoidei	ANCESTRAL SPECIES	238														ENSGT00390000001652.f.a.p ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000155968.d.b	ENSGT00550000075141	ENSGT00530000063675.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	276	ENSGT00940000158374.c.a	ENSGT00390000012490.a	ENSGT00940000159291.j	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00530000065390.h	ENSGT00940000165284	ENSGT00940000164692.g	ENSGT00390000013727.c.a	ENSGT01030000234558.A.a.a.b.g	ENSGT00390000007643	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.a.b.a	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.a.b.b.a.a	ENSGT00390000001652.f.a.p.a ##21	ENSGT00390000003623.g	ENSGT00950000183153.c.b.a.b.e ##22	ENSGT00510000047137.q.a	ENSGT00940000155968.d.b.b	ENSGT00550000075141	ENSGT00530000063675.b.y	ENSGT00940000156136.db.b.b.b
Goldfish	MODERN SPECIES	48	ENSCARG00000066927	nppal (ENSCARG00000066921)	ENSCARG00000066915	ENSCARG00000066278	mfn2 (ENSCARG00000065977)	plod1a (ENSCARG00000059131)	si:dkeyp-104h9.5 (ENSCARG00000058872)	ENSCARG00000058863	ENSCARG00000058848	ENSCARG00000058831	ENSCARG00000058825	ENSCARG00000058776	TPRG1L (ENSCARG00000058741) ##21	wrap73 (ENSCARG00000058642)	ENSCARG00000058625	tp73 (ENSCARG00000058233) ##22	rer1 (ENSCARG00000058199)	AAK1 (ENSCARG00000055943)	ENSCARG00000055846	ddx51 (ENSCARG00000055790)	golm1 (ENSCARG00000055767)	ENSCARG00000055718	ENSCARG00000055437	ENSCARG00000055368	nr2c2 (ENSCARG00000054965)	mrps25 (ENSCARG00000054896)	ENSCARG00000054894	RBSN (ENSCARG00000054341)	ENSCARG00000054285	ENSCARG00000054277	GABRD (ENSCARG00000054107)
Cyprininae_a	ANCESTRAL SPECIES	437		ENSGT00390000012490.a	ENSGT00940000159291.j	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00530000065390.h	ENSGT00940000165284	ENSGT00940000164692.g	ENSGT00390000013727.c.a	ENSGT01030000234558.A.a.a.b.g	ENSGT00390000007643	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.a.b.a	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.a.b.b.a.a	ENSGT00390000001652.f.a.p.a ##21	ENSGT00390000003623.g	ENSGT00950000183153.c.b.a.b.e ##22	ENSGT00510000047137.q.a	ENSGT00940000155968.d.b.b	ENSGT00550000075141	ENSGT00530000063675.b.y	ENSGT00940000156136.db.b.b.b
Common carp reference	MODERN SPECIES	23	pex10 (ENSCCRG00000001505)	mthfr (ENSCCRG00000016693)	CLCN6 (ENSCCRG00000033903)	nppa (ENSCCRG00000081727)	nppb (ENSCCRG00000033913)	nppal (ENSCCRG00000035178)	ENSCCRG00000035182	ENSCCRG00000035213	mfn2 (ENSCCRG00000078102)	plod1a (ENSCCRG00000009679)	si:dkeyp-104h9.5 (ENSCCRG00000021994)	ENSCCRG00000040286	ENSCCRG00000011563	TPRG1L (ENSCCRG00000065735) ##21	wrap73 (ENSCCRG00000069829)	tp73 (ENSCCRG00000053508) ##22	rer1 (ENSCCRG00000036738)	ENSCCRG00000032738	ddx51 (ENSCCRG00000032735)	golm1 (ENSCCRG00000032733)	ENSCCRG00000020878	ENSCCRG00000065982	ENSCCRG00000067504	ENSCCRG00000069436	ENSCCRG00000042605	ENSCCRG00000055895	ENSCCRG00000028756	ENSCCRG00000048814	gfpt1 (ENSCCRG00000055628)	naa35 (ENSCCRG00000066872)	agtpbp1 (ENSCCRG00000066486)
Golden-line barbel	MODERN SPECIES	207	plch2a (ENSSGRG00000031065)	pex10 (ENSSGRG00000031063)	ENSSGRG00000031060	CLCN6 (ENSSGRG00000031004)	nppa (ENSSGRG00000031002)	nppb (ENSSGRG00000031001)	nppal (ENSSGRG00000030998)	ENSSGRG00000030993	mfn2 (ENSSGRG00000030784)	plod1a (ENSSGRG00000030782)	si:dkeyp-104h9.5 (ENSSGRG00000030780)	ENSSGRG00000030745	ENSSGRG00000030732	TPRG1L (ENSSGRG00000030725) ##21	wrap73 (ENSSGRG00000030698)	tp73 (ENSSGRG00000030697) ##22	rer1 (ENSSGRG00000030683)	AAK1 (ENSSGRG00000030680)	ddx51 (ENSSGRG00000030659)	golm1 (ENSSGRG00000030655)	sncb (ENSSGRG00000030653)	ENSSGRG00000030652	ENSSGRG00000030651	ENSSGRG00000030649	rnf44 (ENSSGRG00000030644)	faf2 (ENSSGRG00000030601)	higd2a (ENSSGRG00000030594)	CLTB (ENSSGRG00000030592)	pdlim7 (ENSSGRG00000030577)	unc5a (ENSSGRG00000030573)	atoh1b (ENSSGRG00000030572)
Cyprininae	ANCESTRAL SPECIES	922														ENSGT00390000001652.f.a.p.b ##21	ENSGT00390000003623.h	ENSGT00950000183153.c.b.a.b.f ##22	ENSGT00510000047137.q.b	ENSGT00940000155968.d.b.a	ENSGT00530000063675.b.z
Goldfish	MODERN SPECIES	14	egr3 (ENSCARG00000017059)	BIN3 (ENSCARG00000017074)	ENSCARG00000017110	b2ml (ENSCARG00000017182)	zgc:56596 (ENSCARG00000017192)	rab7b (ENSCARG00000017207)	ENSCARG00000017234	DISP3 (ENSCARG00000017679)	bmp1a (ENSCARG00000018102)	kansl3 (ENSCARG00000027200)	ENSCARG00000027242	ENSCARG00000027248	ENSCARG00000027254	ENSCARG00000027260	TPRG1L (ENSCARG00000027272) ##21	tp73 (ENSCARG00000027309) ##22	rer1 (ENSCARG00000027550)	AAK1 (ENSCARG00000027649)	golm1 (ENSCARG00000003814)	ENSCARG00000003849	arhgef3 (ENSCARG00000003987)	SIRT7 (ENSCARG00000004370)	ncbp2 (ENSCARG00000004423)	senp5 (ENSCARG00000004481)	anos1b (ENSCARG00000004486)	si:ch211-262h13.5 (ENSCARG00000004500)	ENSCARG00000004510	ahsg1 (ENSCARG00000004522)	ENSCARG00000004536	kcnh1b (ENSCARG00000004566)	ENSCARG00000004689
Cyprininae_a	ANCESTRAL SPECIES	700														ENSGT00390000001652.f.a.p.b ##21	ENSGT00390000003623.h	ENSGT00950000183153.c.b.a.b.f ##22	ENSGT00510000047137.q.b	ENSGT00940000155968.d.b.a	ENSGT00530000063675.b.z
Common carp reference	MODERN SPECIES	17	mthfr (ENSCCRG00000016566)	ENSCCRG00000062764	nppa (ENSCCRG00000056048)	ENSCCRG00000035194	nppal (ENSCCRG00000035198)	ENSCCRG00000035202	ENSCCRG00000035186	mfn2 (ENSCCRG00000022346)	plod1a (ENSCCRG00000019372)	si:dkeyp-104h9.5 (ENSCCRG00000066431)	ENSCCRG00000002910	ENSCCRG00000058797	ENSCCRG00000017359	TPRG1L (ENSCCRG00000053531) ##21	wrap73 (ENSCCRG00000047756)	tp73 (ENSCCRG00000048506) ##22	rer1 (ENSCCRG00000062229)	ENSCCRG00000048655	golm1 (ENSCCRG00000075682)	ENSCCRG00000059316	ENSCCRG00000056173	ENSCCRG00000053471	ENSCCRG00000082454	ENSCCRG00000056423	ENSCCRG00000025329	ENSCCRG00000075353	rad21l1 (ENSCCRG00000038376)	ENSCCRG00000010506	fkbp1aa (ENSCCRG00000079573)	mfsd2al2 (ENSCCRG00000010504)	ENSCCRG00000067071
Golden-line barbel	MODERN SPECIES	326	ENSSGRG00000010199	kank3 (ENSSGRG00000010202)	dpp9 (ENSSGRG00000010238)	si:ch211-251b21.1 (ENSSGRG00000012233)	plch2a (ENSSGRG00000012237)	mthfr (ENSSGRG00000012244)	CLCN6 (ENSSGRG00000012289)	nppa (ENSSGRG00000012500)	ENSSGRG00000012501	nppal (ENSSGRG00000012502)	ENSSGRG00000012505	mfn2 (ENSSGRG00000012516)	plod1a (ENSSGRG00000012549)	ENSSGRG00000012633 ##21	wrap73 (ENSSGRG00000012635)	tp73 (ENSSGRG00000012753) ##22	rer1 (ENSSGRG00000012999)	AAK1 (ENSSGRG00000013091)	golm1 (ENSSGRG00000013094)
Zebrafish	MODERN SPECIES	23	mfn2 (ENSDARG00000079504)	ENSDARG00000092738	ENSDARG00000078324	ENSDARG00000104072	nppal (ENSDARG00000052948)	nppb (ENSDARG00000052958)	nppa (ENSDARG00000052960)	CLCN6 (ENSDARG00000032577)	ENSDARG00000041462	ENSDARG00000102529	ENSDARG00000068145	ENSDARG00000101779	ENSDARG00000100045	TPRG1L (ENSDARG00000068149) ##21	wrap73 (ENSDARG00000009557)	tp73 (ENSDARG00000017953) ##22	rer1 (ENSDARG00000012747)	AAK1 (ENSDARG00000011855)	ddx51 (ENSDARG00000025854)	golm1 (ENSDARG00000025858)	rad21l1 (ENSDARG00000022493)	ENSDARG00000078485	fkbp1aa (ENSDARG00000022684)	mfsd2al2 (ENSDARG00000075375)	ENSDARG00000015293	PRICKLE3 (ENSDARG00000073996)	plp2b (ENSDARG00000036630)	ENSDARG00000068127	ENSDARG00000096449	sypb (ENSDARG00000002230)	nfu1 (ENSDARG00000068125)
Euteleosteomorpha	ANCESTRAL SPECIES	61	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000154513.B	ENSGT00940000154513.A	ENSGT00970000197149	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00940000156759.a.a
Acanthomorphata	ANCESTRAL SPECIES	20	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00390000002461
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000171598	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000171598	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00940000164327.a	ENSGT00950000183116.b.a.a.b.a.b.m.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000156275.e	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000156275.e	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000178879	ENSGT00520000055570.B.l.h	ENSGT00940000156136.a.b	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	17	ENSGT00940000156275.e	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00940000178879	ENSGT00520000055570.B.l.h	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Haplochromini	ANCESTRAL SPECIES	18	ENSGT00940000156275.e	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00940000178879	ENSGT00520000055570.B.l.h	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Burton s mouthbrooder	MODERN SPECIES	1433														TPRG1L (ENSHBUG00000011467) ##21	wrap73 (ENSHBUG00000011459)	tp73 (ENSHBUG00000011409) ##22
Haplochromini_A	ANCESTRAL SPECIES	22	ENSGT00940000156275.e	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00520000055570.B.l.h	ENSGT00940000178879	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
P. nyererei	MODERN SPECIES	344	emp3b (ENSPNYG00000008844)	zmynd12 (ENSPNYG00000008874)	rimkla (ENSPNYG00000008929)	ENSPNYG00000008952	ENSPNYG00000008966	ENSPNYG00000008983	kazna (ENSPNYG00000009013)	tmem51a (ENSPNYG00000009065)	ela2l (ENSPNYG00000009076)	ela2 (ENSPNYG00000009109)	ENSPNYG00000009137	cbln10 (ENSPNYG00000009182)	cbln10 (ENSPNYG00000009212)	TPRG1L (ENSPNYG00000009303) ##21	wrap73 (ENSPNYG00000009259)	tp73 (ENSPNYG00000009322) ##22	rer1 (ENSPNYG00000009414)	ENSPNYG00000009608	ENSPNYG00000009677	ENSPNYG00000009777	ENSPNYG00000009798	ENSPNYG00000009808	her3 (ENSPNYG00000009828)	GPR153 (ENSPNYG00000009874)	acot7 (ENSPNYG00000009938)	HES2 (ENSPNYG00000009973)	HES2 (ENSPNYG00000010008)	espn (ENSPNYG00000010025)	arhgef16 (ENSPNYG00000010065)	ybx1 (ENSPNYG00000010076)	ppih (ENSPNYG00000010097)
Haplochromini_B	ANCESTRAL SPECIES	19	ENSGT00940000156275.e	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00520000055570.B.l.h	ENSGT00940000178879	ENSGT00940000156136.a.a	ENSGT00940000156136.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Zebra mbuna	MODERN SPECIES	1103	znf362b (ENSMZEG00005020215)	emp3b (ENSMZEG00005020223)	zmynd12 (ENSMZEG00005020227)	rimkla (ENSMZEG00005020236)	foxj3 (ENSMZEG00005020240)	ENSMZEG00005020246	kazna (ENSMZEG00005020252)	tmem51a (ENSMZEG00005020262)	ela2l (ENSMZEG00005020268)	ela2 (ENSMZEG00005020275)	ENSMZEG00005020291	ENSMZEG00005020304	ENSMZEG00005020311	TPRG1L (ENSMZEG00005020315) ##21	wrap73 (ENSMZEG00005020320)	tp73 (ENSMZEG00005020334) ##22	rer1 (ENSMZEG00005020344)	ENSMZEG00005020350	ENSMZEG00005020360	ENSMZEG00005020374	ENSMZEG00005020380	ENSMZEG00005020388	her3 (ENSMZEG00005020391)	GPR153 (ENSMZEG00005020394)	acot7 (ENSMZEG00005020398)	ENSMZEG00005020413	ENSMZEG00005020425	HES2 (ENSMZEG00005020426)	HES2 (ENSMZEG00005020428)	espn (ENSMZEG00005020430)	arhgef16 (ENSMZEG00005020434)
Eastern happy	MODERN SPECIES	12	znf362b (ENSACLG00000023936)	emp3b (ENSACLG00000023917)	zmynd12 (ENSACLG00000023882)	rimkla (ENSACLG00000023857)	foxj3 (ENSACLG00000023827)	ENSACLG00000023820	kazna (ENSACLG00000023740)	tmem51a (ENSACLG00000023721)	ela2l (ENSACLG00000023708)	ela2 (ENSACLG00000023668)	ENSACLG00000023520	cbln10 (ENSACLG00000023459)	cbln10 (ENSACLG00000023403)	TPRG1L (ENSACLG00000023385) ##21	wrap73 (ENSACLG00000023339)	tp73 (ENSACLG00000023276) ##22	rer1 (ENSACLG00000023248)	ENSACLG00000023218	ENSACLG00000023216	ENSACLG00000023209	ENSACLG00000023173	ENSACLG00000023049	ENSACLG00000023037	her3 (ENSACLG00000023028)	GPR153 (ENSACLG00000023007)	ENSACLG00000022997	acot7 (ENSACLG00000022915)	HES2 (ENSACLG00000022887)	HES2 (ENSACLG00000022876)	espn (ENSACLG00000022795)	arhgef16 (ENSACLG00000022739)
Lyretail cichlid	MODERN SPECIES	298	emp3b (ENSNBRG00000004474)	zmynd12 (ENSNBRG00000004407)	rimkla (ENSNBRG00000004379)	ENSNBRG00000004328	ENSNBRG00000004319	kazna (ENSNBRG00000004301)	ENSNBRG00000004290	tmem51a (ENSNBRG00000004281)	ela2l (ENSNBRG00000004255)	ela2 (ENSNBRG00000004233)	ENSNBRG00000004183	cbln10 (ENSNBRG00000004172)	ENSNBRG00000004152	TPRG1L (ENSNBRG00000004134) ##21	wrap73 (ENSNBRG00000003928)	tp73 (ENSNBRG00000003678) ##22	rer1 (ENSNBRG00000003625)	ENSNBRG00000003591	ENSNBRG00000003553	ENSNBRG00000003518	her3 (ENSNBRG00000003506)	GPR153 (ENSNBRG00000003473)	acot7 (ENSNBRG00000003425)	HES2 (ENSNBRG00000003399)	HES2 (ENSNBRG00000003376)	espn (ENSNBRG00000003267)	arhgef16 (ENSNBRG00000003202)	ybx1 (ENSNBRG00000003194)	ENSNBRG00000003187	ppih (ENSNBRG00000003148)	taf10 (ENSNBRG00000003119)
Nile tilapia	MODERN SPECIES	12	ENSONIG00000002165	kazna (ENSONIG00000002160)	ENSONIG00000032143	tmem51a (ENSONIG00000002156)	ela2l (ENSONIG00000002140)	ela2 (ENSONIG00000002124)	ENSONIG00000027503	ENSONIG00000038130	ENSONIG00000035163	ENSONIG00000002121	ENSONIG00000036294	ENSONIG00000036727	TPRG1L (ENSONIG00000002116) ##21	ENSONIG00000028661	wrap73 (ENSONIG00000002110)	tp73 (ENSONIG00000002106) ##22	rer1 (ENSONIG00000002100)	ENSONIG00000029123	ENSONIG00000039488	ENSONIG00000002097	ENSONIG00000034410	ENSONIG00000036628	ENSONIG00000042187	ENSONIG00000038351	GPR153 (ENSONIG00000002089)	acot7 (ENSONIG00000002081)	HES2 (ENSONIG00000028715)	HES2 (ENSONIG00000002077)	espn (ENSONIG00000002070)	arhgef16 (ENSONIG00000002067)	ybx1 (ENSONIG00000002062)
Midas cichlid	MODERN SPECIES	1346	emp3b (ENSACIG00000021797)	zmynd12 (ENSACIG00000021841)	rimkla (ENSACIG00000021880)	foxj3 (ENSACIG00000021892)	ENSACIG00000021922	kazna (ENSACIG00000021965)	ENSACIG00000021973	tmem51a (ENSACIG00000021983)	ela2l (ENSACIG00000021998)	ela2 (ENSACIG00000022004)	ENSACIG00000022014	cbln10 (ENSACIG00000022035)	cbln10 (ENSACIG00000022052)	TPRG1L (ENSACIG00000022067) ##21	wrap73 (ENSACIG00000022083)	tp73 (ENSACIG00000022099) ##22	rer1 (ENSACIG00000022115)	ENSACIG00000022132	ENSACIG00000022174	ENSACIG00000022184	ENSACIG00000022205	GPR153 (ENSACIG00000022239)	acot7 (ENSACIG00000022245)	HES2 (ENSACIG00000022261)	HES2 (ENSACIG00000022267)	espn (ENSACIG00000022273)	arhgef16 (ENSACIG00000022282)	ybx1 (ENSACIG00000022321)	ENSACIG00000022536	ppih (ENSACIG00000022542)	taf10 (ENSACIG00000022564)
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b.n	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a.d	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a.b.a.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.b.d	ENSGT00940000156136.b.c.b	ENSGT00940000156136.b.c.a.a	ENSGT00940000156136.b.c.a.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598
Pomacentridae_A	ANCESTRAL SPECIES	12	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b.n	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a.b.a.d	ENSGT01030000234528.B.a.a.b.a.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.b.d	ENSGT00940000156136.b.c.b	ENSGT00940000156136.b.c.a.a	ENSGT00940000156136.b.c.a.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000171598	ENSGT00940000154721
Amphiprion	ANCESTRAL SPECIES	29	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b.n	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a.d	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a.b.a.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.b.d.a	ENSGT00940000156136.b.c.b	ENSGT00940000156136.b.c.a.a	ENSGT00940000156136.b.c.a.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598
Orange clownfish	MODERN SPECIES	22	emp3b (ENSAPEG00000016096)	zmynd12 (ENSAPEG00000016044)	rimkla (ENSAPEG00000016015)	ENSAPEG00000016005	ENSAPEG00000015987	ENSAPEG00000015955	kazna (ENSAPEG00000015871)	tmem51a (ENSAPEG00000015808)	ENSAPEG00000015595	ela2l (ENSAPEG00000015555)	CTRC (ENSAPEG00000015539)	ela2 (ENSAPEG00000015515)	ENSAPEG00000015454	TPRG1L (ENSAPEG00000015399) ##21	wrap73 (ENSAPEG00000015343)	tp73 (ENSAPEG00000015292) ##22	rer1 (ENSAPEG00000015269)	ENSAPEG00000015246	ENSAPEG00000015196	ENSAPEG00000015049	ENSAPEG00000014942	her3 (ENSAPEG00000014879)	GPR153 (ENSAPEG00000014821)	acot7 (ENSAPEG00000014784)	HES2 (ENSAPEG00000014765)	HES2 (ENSAPEG00000014754)	espn (ENSAPEG00000014694)	arhgef16 (ENSAPEG00000014658)	ybx1 (ENSAPEG00000014606)	ppih (ENSAPEG00000014562)	ENSAPEG00000014547
Clown anemonefish	MODERN SPECIES	914														TPRG1L (ENSAOCG00000008488) ##21	wrap73 (ENSAOCG00000008538)	tp73 (ENSAOCG00000008573) ##22	rer1 (ENSAOCG00000008610)	ENSAOCG00000008630	ENSAOCG00000008655	ENSAOCG00000008674	ENSAOCG00000000514	ENSAOCG00000008822	her3 (ENSAOCG00000008836)	GPR153 (ENSAOCG00000008871)	acot7 (ENSAOCG00000008918)	HES2 (ENSAOCG00000008940)	HES2 (ENSAOCG00000008961)	espn (ENSAOCG00000009001)	arhgef16 (ENSAOCG00000009084)	ybx1 (ENSAOCG00000009122)	ENSAOCG00000002049
Spiny chromis	MODERN SPECIES	341						ENSAPOG00000016891	TMEM51 (ENSAPOG00000016898)	ENSAPOG00000016921	ela2l (ENSAPOG00000016932)	ENSAPOG00000016944	ela2 (ENSAPOG00000016948)	ela2 (ENSAPOG00000016959)	ENSAPOG00000017001	TPRG1L (ENSAPOG00000017060) ##21	wrap73 (ENSAPOG00000017140)	tp73 (ENSAPOG00000017207) ##22	rer1 (ENSAPOG00000017244)	ENSAPOG00000017379	ENSAPOG00000017579	ENSAPOG00000017839	ENSAPOG00000018128	her3 (ENSAPOG00000018146)	GPR153 (ENSAPOG00000018193)	acot7 (ENSAPOG00000018212)	HES2 (ENSAPOG00000018222)	HES2 (ENSAPOG00000018225)	espn (ENSAPOG00000018302)	arhgef16 (ENSAPOG00000018311)	ybx1 (ENSAPOG00000018321)	ENSAPOG00000018330	ppih (ENSAPOG00000018366)
Bicolor damselfish	MODERN SPECIES	821														TPRG1L (ENSSPAG00000019657) ##21	wrap73 (ENSSPAG00000019680)	tp73 (ENSSPAG00000019735) ##22	rer1 (ENSSPAG00000019788)	ENSSPAG00000019817	ENSSPAG00000019905	ENSSPAG00000020189	ENSSPAG00000020217	GPR153 (ENSSPAG00000020233)	acot7 (ENSSPAG00000020249)	HES2 (ENSSPAG00000020267)	HES2 (ENSSPAG00000020279)	espn (ENSSPAG00000020294)	arhgef16 (ENSSPAG00000020336)	ybx1 (ENSSPAG00000020399)	ppih (ENSSPAG00000020777)	ENSSPAG00000020795	taf10 (ENSSPAG00000020804)
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598
Oryzias	ANCESTRAL SPECIES	4	ENSGT00940000159540.c	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.c	ENSGT00940000156136.a.b.d.b	ENSGT00940000156136.a.b.d.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00940000159540.c	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.c	ENSGT00940000156136.a.b.d.b	ENSGT00940000156136.a.b.d.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Javanese ricefish	MODERN SPECIES	21	ENSOJAG00000019627	znf362b (ENSOJAG00000019605)	ENSOJAG00000019584	emp3b (ENSOJAG00000019562)	ENSOJAG00000019543	rimkla (ENSOJAG00000019524)	foxj3 (ENSOJAG00000019450)	ENSOJAG00000019430	kazna (ENSOJAG00000019304)	tmem51a (ENSOJAG00000019274)	ela2l (ENSOJAG00000019245)	ela2 (ENSOJAG00000019205)	ENSOJAG00000018693	TPRG1L (ENSOJAG00000018646) ##21	wrap73 (ENSOJAG00000018605)	tp73 (ENSOJAG00000018543) ##22	rer1 (ENSOJAG00000018503)	ENSOJAG00000018488	ENSOJAG00000018216	ENSOJAG00000018195	ENSOJAG00000018161	ENSOJAG00000018130	her3 (ENSOJAG00000018111)	GPR153 (ENSOJAG00000018104)	acot7 (ENSOJAG00000018081)	HES2 (ENSOJAG00000018073)	HES2 (ENSOJAG00000018063)	espn (ENSOJAG00000018056)	arhgef16 (ENSOJAG00000017777)	ybx1 (ENSOJAG00000017683)	ENSOJAG00000017666
Indian medaka	MODERN SPECIES	23	znf362b (ENSOMEG00000003980)	ENSOMEG00000004010	emp3b (ENSOMEG00000004033)	zmynd12 (ENSOMEG00000004061)	rimkla (ENSOMEG00000004088)	foxj3 (ENSOMEG00000004114)	ENSOMEG00000004129	KAZN (ENSOMEG00000004188)	tmem51a (ENSOMEG00000004202)	ela2l (ENSOMEG00000004217)	ela2 (ENSOMEG00000004230)	ENSOMEG00000004235	ENSOMEG00000004297	TPRG1L (ENSOMEG00000004333) ##21	wrap73 (ENSOMEG00000004365)	tp73 (ENSOMEG00000004438) ##22	rer1 (ENSOMEG00000004462)	ENSOMEG00000004471	ENSOMEG00000004536	ENSOMEG00000004551	ENSOMEG00000004560	ENSOMEG00000004582	ENSOMEG00000004612	her3 (ENSOMEG00000004625)	GPR153 (ENSOMEG00000000742)	acot7 (ENSOMEG00000004685)	HES2 (ENSOMEG00000004698)	HES2 (ENSOMEG00000004700)	espn (ENSOMEG00000004724)	arhgef16 (ENSOMEG00000004756)	ybx1 (ENSOMEG00000004798)
Oryzias_a	ANCESTRAL SPECIES		ENSGT00390000003047	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.c	ENSGT00940000156136.a.b.d.a.d	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598
Chinese medaka	MODERN SPECIES	231	alas2 (ENSOSIG00000009130)	ENSOSIG00000009403	znf362b (ENSOSIG00000009406)	ENSOSIG00000009408	emp3b (ENSOSIG00000009410)	rimkla (ENSOSIG00000009413)	ENSOSIG00000009417	foxj3 (ENSOSIG00000009453)	ENSOSIG00000009455	kazna (ENSOSIG00000009459)	tmem51a (ENSOSIG00000009466)	ela2l (ENSOSIG00000009468)	ela2 (ENSOSIG00000009476)	TPRG1L (ENSOSIG00000009501) ##21	wrap73 (ENSOSIG00000009504)	tp73 (ENSOSIG00000009507) ##22	rer1 (ENSOSIG00000009624)	ENSOSIG00000009627	ENSOSIG00000009629	ENSOSIG00000009632	her3 (ENSOSIG00000009637)	GPR153 (ENSOSIG00000009639)	acot7 (ENSOSIG00000009642)	HES2 (ENSOSIG00000009647)	HES2 (ENSOSIG00000009651)	espn (ENSOSIG00000009653)	arhgef16 (ENSOSIG00000009659)	ybx1 (ENSOSIG00000009799)	ppih (ENSOSIG00000009805)	ENSOSIG00000009810	taf10 (ENSOSIG00000009813)
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000004696	znf362b (ENSORLG00000004688)	ENSORLG00000004677	emp3b (ENSORLG00000024963)	ENSORLG00000004657	rimkla (ENSORLG00000004646)	ENSORLG00000004623	ENSORLG00000004620	kazna (ENSORLG00000004613)	tmem51a (ENSORLG00000029841)	ela2l (ENSORLG00000004586)	ela2 (ENSORLG00000004534)	ENSORLG00000004492	TPRG1L (ENSORLG00000004473) ##21	wrap73 (ENSORLG00000004450)	tp73 (ENSORLG00000004402) ##22	rer1 (ENSORLG00000029746)	tas1r2c (ENSORLG00000004383)	ENSORLG00000024379	ENSORLG00000018682	ENSORLG00000018648	ENSORLG00000019311	ENSORLG00000026787	ENSORLG00000025697	tas1r2a (ENSORLG00000004347)	tas1r2b (ENSORLG00000004322)	her3 (ENSORLG00000024424)	GPR153 (ENSORLG00000004317)	ENSORLG00000027325	acot7 (ENSORLG00000004294)	HES2 (ENSORLG00000022762)
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b	ENSGT00940000156136.a.b.a	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.a	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.a.c.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.c.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b.b	ENSGT00940000156136.a.b.b.a	ENSGT00940000156136.a.b.a.f	ENSGT00940000156136.a.b.a.e	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.a.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00980000199193	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.a.a	ENSGT00950000183116.b.a.a.b.a.b.m.a.c.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b.b	ENSGT00940000156136.a.b.b.a	ENSGT00940000156136.a.b.a.f	ENSGT00940000156136.a.b.a.e	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b
Poecilia	ANCESTRAL SPECIES	37	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.a.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b.b	ENSGT00940000156136.a.b.b.a	ENSGT00940000156136.a.b.a.f	ENSGT00940000156136.a.b.a.e	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b
NAME_6	ANCESTRAL SPECIES	57	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.i.a.a.c.a	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.a.a.c	ENSGT00950000183116.b.a.a.b.a.b.n.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.d.b	ENSGT00950000183116.b.a.a.b.a.b.m.a.c.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b.b	ENSGT00940000156136.a.b.b.a	ENSGT00940000156136.a.b.a.f	ENSGT00940000156136.a.b.a.e	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b
Amazon molly	MODERN SPECIES	307	tmem51a (ENSPFOG00000009596)	CTRC (ENSPFOG00000009633)	ela2l (ENSPFOG00000021870)	ela2 (ENSPFOG00000010068)	ENSPFOG00000020674	ENSPFOG00000010341	ENSPFOG00000022071	ENSPFOG00000020675	ENSPFOG00000010608	ENSPFOG00000023070	cbln10 (ENSPFOG00000010619)	ENSPFOG00000010620	ENSPFOG00000010647	TPRG1L (ENSPFOG00000010696) ##21	wrap73 (ENSPFOG00000010739)	tp73 (ENSPFOG00000010828) ##22	ENSPFOG00000010933	ENSPFOG00000022131	ENSPFOG00000010941	ENSPFOG00000011018	ENSPFOG00000011057	ENSPFOG00000011082	her3 (ENSPFOG00000024377)	GPR153 (ENSPFOG00000011119)	acot7 (ENSPFOG00000011149)	HES2 (ENSPFOG00000011208)	HES2 (ENSPFOG00000011221)	ENSPFOG00000011246	ENSPFOG00000022491	arhgef16 (ENSPFOG00000011297)	ybx1 (ENSPFOG00000011441)
Sailfin molly	MODERN SPECIES	1898													ENSPLAG00000017192	TPRG1L (ENSPLAG00000000389) ##21	wrap73 (ENSPLAG00000017174)	tp73 (ENSPLAG00000017124) ##22	rer1 (ENSPLAG00000017051)	ENSPLAG00000017021	ENSPLAG00000017006	ENSPLAG00000016983	ENSPLAG00000016951	ENSPLAG00000016933
Guppy	MODERN SPECIES	459	tmem51a (ENSPREG00000022894)	ela2l (ENSPREG00000022896)	ela2 (ENSPREG00000022903)	ENSPREG00000022921	ENSPREG00000022939	ENSPREG00000022946	ENSPREG00000022951	cbln10 (ENSPREG00000022955)	ENSPREG00000022960	cbln10 (ENSPREG00000022965)	ENSPREG00000022967	ENSPREG00000022970	ENSPREG00000022974	TPRG1L (ENSPREG00000022977) ##21	wrap73 (ENSPREG00000022981)	tp73 (ENSPREG00000022993) ##22	rer1 (ENSPREG00000023002)	ENSPREG00000023005	ENSPREG00000023007	ENSPREG00000023012	selenok (ENSPREG00000023015)	actr8 (ENSPREG00000023020)	ENSPREG00000000587	CHDH (ENSPREG00000000622)	CACNA1D (ENSPREG00000000682)	dcp1a (ENSPREG00000000750)	TKT (ENSPREG00000000767)	ENSPREG00000000838	nsun5 (ENSPREG00000000892)	ENSPREG00000000920	sgk2a (ENSPREG00000000953)
Platyfish	MODERN SPECIES		ela2 (ENSXMAG00000016580)	ENSXMAG00000019072	ENSXMAG00000019088	ENSXMAG00000028140	ENSXMAG00000023167	ENSXMAG00000022973	ENSXMAG00000024998	ENSXMAG00000029461	ENSXMAG00000024464	ENSXMAG00000004980	ENSXMAG00000025677	ENSXMAG00000023086	ENSXMAG00000023387	TPRG1L (ENSXMAG00000029424) ##21	wrap73 (ENSXMAG00000009483)	tp73 (ENSXMAG00000017360) ##22	rer1 (ENSXMAG00000017376)	ENSXMAG00000017377	ENSXMAG00000018625	ENSXMAG00000027889	ENSXMAG00000018628	her3 (ENSXMAG00000028058)	GPR153 (ENSXMAG00000018638)	acot7 (ENSXMAG00000018646)	HES2 (ENSXMAG00000018647)	HES2 (ENSXMAG00000030026)	espn (ENSXMAG00000018650)	arhgef16 (ENSXMAG00000018659)	ybx1 (ENSXMAG00000018674)	ENSXMAG00000020859	ppih (ENSXMAG00000024576)
NAME_4	ANCESTRAL SPECIES	4	ENSGT00940000159540.c	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b.b	ENSGT00940000156136.a.b.b.a	ENSGT00940000156136.a.b.a.f	ENSGT00940000156136.a.b.a.e	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b
Sheepshead minnow	MODERN SPECIES	270												ENSCVAG00000002551	ENSCVAG00000002547	TPRG1L (ENSCVAG00000002537) ##21	wrap73 (ENSCVAG00000002532)	tp73 (ENSCVAG00000002518) ##22	rer1 (ENSCVAG00000002505)	ENSCVAG00000002493	ENSCVAG00000002482	ENSCVAG00000002474	ENSCVAG00000002467	ENSCVAG00000002459	ENSCVAG00000002452	ENSCVAG00000002422	ENSCVAG00000002417	her3 (ENSCVAG00000002412)	GPR153 (ENSCVAG00000002406)	acot7 (ENSCVAG00000002394)	ENSCVAG00000002380	HES2 (ENSCVAG00000002375)	espn (ENSCVAG00000002366)
Mummichog	MODERN SPECIES	242							ENSFHEG00000012625	ENSFHEG00000012634	kazna (ENSFHEG00000012644)	tmem51a (ENSFHEG00000012651)	ela2l (ENSFHEG00000012698)	ela2 (ENSFHEG00000012717)	ENSFHEG00000012763	TPRG1L (ENSFHEG00000012779) ##21	wrap73 (ENSFHEG00000012819)	tp73 (ENSFHEG00000012864) ##22
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.a.b.b	ENSGT00940000156136.a.b.a	ENSGT00940000156136.a.a	ENSGT00940000156136.b.a	ENSGT00940000156136.b.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000171598
Mangrove rivulus	MODERN SPECIES	41	znf362b (ENSKMAG00000014346)	ENSKMAG00000014236	EMP3 (ENSKMAG00000014206)	zmynd12 (ENSKMAG00000014190)	rimkla (ENSKMAG00000014159)	foxj3 (ENSKMAG00000014124)	ENSKMAG00000014104	kazna (ENSKMAG00000014016)	tmem51a (ENSKMAG00000013973)	ela2l (ENSKMAG00000013929)	ela2 (ENSKMAG00000013900)	ENSKMAG00000013824	ENSKMAG00000013803	TPRG1L (ENSKMAG00000013784) ##21	wrap73 (ENSKMAG00000013735)	tp73 (ENSKMAG00000013634) ##22	rer1 (ENSKMAG00000013585)	ENSKMAG00000013562	ENSKMAG00000013504	ENSKMAG00000013443	ENSKMAG00000013409	ENSKMAG00000013358	ENSKMAG00000013342	her3 (ENSKMAG00000013327)	GPR153 (ENSKMAG00000013293)	acot7 (ENSKMAG00000013241)	HES2 (ENSKMAG00000013218)	HES2 (ENSKMAG00000013194)	espn (ENSKMAG00000013087)	arhgef16 (ENSKMAG00000012975)	ybx1 (ENSKMAG00000013012)
Turquoise killifish	MODERN SPECIES	1624	RIMKLA (ENSNFUG00015024363)	ENSNFUG00015024359	foxj3 (ENSNFUG00015024342)	ENSNFUG00015024337	ENSNFUG00015024336	ENSNFUG00015024334	kazna (ENSNFUG00015024324)	tmem51a (ENSNFUG00015024323)	CTRC (ENSNFUG00015024322)	ela2 (ENSNFUG00015024316)	ENSNFUG00015024241	ENSNFUG00015024233	ENSNFUG00015024229	TPRG1L (ENSNFUG00015024227) ##21	WRAP73 (ENSNFUG00015024218)	tp73 (ENSNFUG00015024018) ##22	rer1 (ENSNFUG00015024001)	ENSNFUG00015023986	ENSNFUG00015023980	ENSNFUG00015023951	ENSNFUG00015023924	ENSNFUG00015023921	GPR153 (ENSNFUG00015023917)	ACOT7 (ENSNFUG00015023899)	HES2 (ENSNFUG00015023891)	HES2 (ENSNFUG00015023883)	ESPN (ENSNFUG00015023866)	ARHGEF16 (ENSNFUG00015023819)	ybx1 (ENSNFUG00015023800)	ENSNFUG00015023796	PPIH (ENSNFUG00015023794)
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Zig-zag eel	MODERN SPECIES	21	ENSMAMG00000018867	znf362b (ENSMAMG00000018846)	ENSMAMG00000018795	ENSMAMG00000018774	ENSMAMG00000018742	rimkla (ENSMAMG00000025507)	ENSMAMG00000018723	ENSMAMG00000024819	KAZN (ENSMAMG00000018678)	ENSMAMG00000028046	ENSMAMG00000018661	ENSMAMG00000018643	ENSMAMG00000018596	TPRG1L (ENSMAMG00000025568) ##21	wrap73 (ENSMAMG00000018546)	tp73 (ENSMAMG00000018524) ##22	ENSMAMG00000026476	rer1 (ENSMAMG00000018498)	ENSMAMG00000018440	ENSMAMG00000018423	her3 (ENSMAMG00000018402)	GPR153 (ENSMAMG00000018386)	acot7 (ENSMAMG00000018320)	HES2 (ENSMAMG00000025495)	HES2 (ENSMAMG00000018357)	ENSMAMG00000018288	arhgef16 (ENSMAMG00000018280)	ybx1 (ENSMAMG00000018242)	ENSMAMG00000028576	ppih (ENSMAMG00000018217)	ENSMAMG00000018213
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.d	ENSGT00940000156136.c	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Climbing perch	MODERN SPECIES	20	znf362b (ENSATEG00000015050)	ENSATEG00000014861	ENSATEG00000014825	ENSATEG00000014813	rimkla (ENSATEG00000026594)	ENSATEG00000027677	ENSATEG00000028708	ENSATEG00000014709	TMEM51 (ENSATEG00000026942)	ENSATEG00000013577	ENSATEG00000013472	ENSATEG00000013391	ENSATEG00000013358	TPRG1L (ENSATEG00000028808) ##21	wrap73 (ENSATEG00000013267)	tp73 (ENSATEG00000013195) ##22	rer1 (ENSATEG00000013178)	ENSATEG00000013059	ENSATEG00000012901	ENSATEG00000012867	GPR153 (ENSATEG00000012843)	acot7 (ENSATEG00000012826)	HES2 (ENSATEG00000012780)	HES2 (ENSATEG00000012764)	espn (ENSATEG00000012685)	arhgef16 (ENSATEG00000012564)	ybx1 (ENSATEG00000012533)	ENSATEG00000012516	ppih (ENSATEG00000012477)	ENSATEG00000012468	ENSATEG00000012424
Siamese fighting fish	MODERN SPECIES	18	ENSBSLG00000001863	znf362b (ENSBSLG00000001866)	ENSBSLG00000001880	emp3b (ENSBSLG00000001900)	ENSBSLG00000002150	rimkla (ENSBSLG00000002201)	ENSBSLG00000002226	ENSBSLG00000002244	kazna (ENSBSLG00000002356)	ENSBSLG00000002540	ela2l (ENSBSLG00000002551)	ela2 (ENSBSLG00000002594)	ENSBSLG00000002697	TPRG1L (ENSBSLG00000002914) ##21	wrap73 (ENSBSLG00000002923)	tp73 (ENSBSLG00000002958) ##22	rer1 (ENSBSLG00000003021)	ENSBSLG00000003023	ENSBSLG00000003037	GPR153 (ENSBSLG00000003063)	acot7 (ENSBSLG00000003069)	HES2 (ENSBSLG00000003073)	HES2 (ENSBSLG00000003074)	espn (ENSBSLG00000003075)	arhgef16 (ENSBSLG00000003080)	ybx1 (ENSBSLG00000003114)	ppih (ENSBSLG00000003127)	ENSBSLG00000003128	taf10 (ENSBSLG00000003129)	zgc:154075 (ENSBSLG00000003131)	ENSBSLG00000003133
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b.p	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Barramundi perch	MODERN SPECIES	128	znf362b (ENSLCAG00010027453)	emp3b (ENSLCAG00010027459)	zmynd12 (ENSLCAG00010027462)	rimkla (ENSLCAG00010027463)	ENSLCAG00010027464	ENSLCAG00010027467	ENSLCAG00010027469	kazna (ENSLCAG00010027471)	ENSLCAG00010027473	ela2l (ENSLCAG00010027476)	ela2 (ENSLCAG00010027478)	ENSLCAG00010027482	ENSLCAG00010027488	TPRG1L (ENSLCAG00010027493) ##21	wrap73 (ENSLCAG00010027496)	tp73 (ENSLCAG00010027505) ##22	rer1 (ENSLCAG00010027508)	ENSLCAG00010027510	ENSLCAG00010027516	ENSLCAG00010027519	ENSLCAG00010027526	ENSLCAG00010027532	GPR153 (ENSLCAG00010027533)	acot7 (ENSLCAG00010027535)	HES2 (ENSLCAG00010027536)	HES2 (ENSLCAG00010027537)	espn (ENSLCAG00010027539)	arhgef16 (ENSLCAG00010027541)	ybx1 (ENSLCAG00010027543)	ppih (ENSLCAG00010027545)	ENSLCAG00010027547
Seriola	ANCESTRAL SPECIES	8	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b.p	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.j	ENSGT00940000156136.i.a	ENSGT00940000156136.i.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT00940000157867.a.b	ENSGT00940000179033	ENSGT00390000012058.c.b	ENSGT00940000156759.a.a	ENSGT00390000013727.c
Yellowtail amberjack	MODERN SPECIES	3155	ENSSLDG00000024993	emp3b (ENSSLDG00000024973)	zmynd12 (ENSSLDG00000024967)	rimkla (ENSSLDG00000024960)	foxj3 (ENSSLDG00000024952)	ENSSLDG00000024947	kazna (ENSSLDG00000024930)	ENSSLDG00000024926	ENSSLDG00000024909	ela2l (ENSSLDG00000024900)	ela2 (ENSSLDG00000024896)	ENSSLDG00000024888	cbln10 (ENSSLDG00000024879)	TPRG1L (ENSSLDG00000024871) ##21	wrap73 (ENSSLDG00000024857)	tp73 (ENSSLDG00000024845) ##22	rer1 (ENSSLDG00000024832)	ENSSLDG00000024824	ENSSLDG00000024815	ENSSLDG00000024806	her3 (ENSSLDG00000024803)	GPR153 (ENSSLDG00000024798)	acot7 (ENSSLDG00000024792)	HES2 (ENSSLDG00000024785)	HES2 (ENSSLDG00000024779)	espn (ENSSLDG00000024741)	kcnab2b (ENSSLDG00000024718)	efhd2 (ENSSLDG00000024708)	ENSSLDG00000024700	mfn2 (ENSSLDG00000024687)	plagx (ENSSLDG00000024684)
Greater amberjack	MODERN SPECIES	23	zmynd12 (ENSSDUG00000002543)	rimkla (ENSSDUG00000002523)	foxj3 (ENSSDUG00000002483)	ENSSDUG00000002473	kazna (ENSSDUG00000002433)	ENSSDUG00000002421	ENSSDUG00000002412	ENSSDUG00000001966	ela2l (ENSSDUG00000001897)	ela2 (ENSSDUG00000001869)	ENSSDUG00000001855	ENSSDUG00000001811	ENSSDUG00000001762	TPRG1L (ENSSDUG00000001732) ##21	wrap73 (ENSSDUG00000001574)	tp73 (ENSSDUG00000001543) ##22	rer1 (ENSSDUG00000001522)	ENSSDUG00000001501	ENSSDUG00000001339	ENSSDUG00000001220	her3 (ENSSDUG00000001207)	GPR153 (ENSSDUG00000001188)	acot7 (ENSSDUG00000001166)	HES2 (ENSSDUG00000001146)	HES2 (ENSSDUG00000001136)	espn (ENSSDUG00000001087)	kcnab2b (ENSSDUG00000001045)	ENSSDUG00000001024	efhd2 (ENSSDUG00000001008)	ENSSDUG00000000969	ENSSDUG00000000944
Pleuronectoidei	ANCESTRAL SPECIES	14	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a.f	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT00440000033870.a.a
Tongue sole	MODERN SPECIES	1	itpr3 (ENSCSEG00000018693)	ENSCSEG00000018733	hm13 (ENSCSEG00000018745)	mrgbp (ENSCSEG00000018759)	SULF2 (ENSCSEG00000018790)	ENSCSEG00000018833	snx21 (ENSCSEG00000019050)	ENSCSEG00000019068	edem2 (ENSCSEG00000019072)	ENSCSEG00000019084	ENSCSEG00000019101	ENSCSEG00000019106	rfc2 (ENSCSEG00000019122)	USP11 (ENSCSEG00000019125)	wrap73 (ENSCSEG00000019140)	tp73 (ENSCSEG00000019152) ##22	rer1 (ENSCSEG00000019161)	ENSCSEG00000019172	ENSCSEG00000019202	her3 (ENSCSEG00000019207)	GPR153 (ENSCSEG00000019218)	acot7 (ENSCSEG00000019224)	HES2 (ENSCSEG00000019244)	HES2 (ENSCSEG00000019247)	espn (ENSCSEG00000019251)	arhgef16 (ENSCSEG00000019262)	ybx1 (ENSCSEG00000019270)	ppih (ENSCSEG00000019278)	ENSCSEG00000019281	taf10 (ENSCSEG00000019284)	rprd1b (ENSCSEG00000019286)
Turbot	MODERN SPECIES	2	ENSSMAG00000016491	ENSSMAG00000016415	ENSSMAG00000016317	ENSSMAG00000016295	ENSSMAG00000016282	rimkla (ENSSMAG00000016247)	ENSSMAG00000016215	ENSSMAG00000016211	kazna (ENSSMAG00000016181)	ENSSMAG00000025431	ENSSMAG00000016156	ENSSMAG00000016093	ENSSMAG00000015988	TPRG1L (ENSSMAG00000015960) ##21	wrap73 (ENSSMAG00000015916)	tp73 (ENSSMAG00000015862) ##22	rer1 (ENSSMAG00000034473)	ENSSMAG00000015832	ENSSMAG00000015831	ENSSMAG00000011198	her3 (ENSSMAG00000027712)	GPR153 (ENSSMAG00000011229)	acot7 (ENSSMAG00000025657)	HES2 (ENSSMAG00000011300)	ENSSMAG00000029110	ENSSMAG00000026044	arhgef16 (ENSSMAG00000011332)	ybx1 (ENSSMAG00000011351)	ENSSMAG00000011417	ppih (ENSSMAG00000034731)	ENSSMAG00000011430
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.p	ENSGT00940000156136.o	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367
Tetraodon	MODERN SPECIES	24	alas2 (ENSTNIG00000005681)	ENSTNIG00000005680	znf362b (ENSTNIG00000019373)	emp3b (ENSTNIG00000007157)	rimkla (ENSTNIG00000007158)	ENSTNIG00000007159	ENSTNIG00000018676	kazna (ENSTNIG00000011970)	prkar2aa (ENSTNIG00000011971)	ENSTNIG00000011972	ela2l (ENSTNIG00000011973)	ela2 (ENSTNIG00000011974)	ENSTNIG00000011975	TPRG1L (ENSTNIG00000011976) ##21	wrap73 (ENSTNIG00000011977)	tp73 (ENSTNIG00000011978) ##22	rer1 (ENSTNIG00000001745)	ENSTNIG00000011979	rer1 (ENSTNIG00000011980)	ENSTNIG00000011981	ENSTNIG00000011982	GPR153 (ENSTNIG00000011983)	acot7 (ENSTNIG00000011984)	HES2 (ENSTNIG00000011985)	HES2 (ENSTNIG00000011986)	espn (ENSTNIG00000011987)	arhgef16 (ENSTNIG00000011988)	ybx1 (ENSTNIG00000011989)	ppih (ENSTNIG00000011990)	taf10 (ENSTNIG00000011991)	zgc:154075 (ENSTNIG00000011992)
Fugu	MODERN SPECIES	15	ENSTRUG00000014254	znf362 (ENSTRUG00000014263)	ENSTRUG00000022648	emp3b (ENSTRUG00000014337)	rimkla (ENSTRUG00000014374)	foxj3 (ENSTRUG00000014404)	ENSTRUG00000020970	ENSTRUG00000023355	kazna (ENSTRUG00000014464)	tmem51a (ENSTRUG00000020611)	CTRC (ENSTRUG00000014497)	ela2 (ENSTRUG00000014615)	ENSTRUG00000014772	TPRG1L (ENSTRUG00000014863) ##21	wrap73 (ENSTRUG00000014886)	tp73 (ENSTRUG00000014931) ##22	rer1 (ENSTRUG00000015012)	tas1r1 (ENSTRUG00000015043)	tas1r2b (ENSTRUG00000026470)	her3 (ENSTRUG00000032181)	GPR153 (ENSTRUG00000015145)	acot7 (ENSTRUG00000015170)	HES2 (ENSTRUG00000021965)	HES2 (ENSTRUG00000015206)	espn (ENSTRUG00000015217)	arhgef16 (ENSTRUG00000015273)	ybx1 (ENSTRUG00000024170)	ENSTRUG00000022009	ppih (ENSTRUG00000015375)	taf10 (ENSTRUG00000015379)	zgc:154075 (ENSTRUG00000015386)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Ballan wrasse	MODERN SPECIES	249						ENSLBEG00000020578	kazna (ENSLBEG00000020477)	ENSLBEG00000020416	ENSLBEG00000020225	ela2l (ENSLBEG00000020185)	ela2 (ENSLBEG00000020141)	ENSLBEG00000020072	ENSLBEG00000020046	TPRG1L (ENSLBEG00000020010) ##21	wrap73 (ENSLBEG00000019932)	tp73 (ENSLBEG00000019867) ##22	rer1 (ENSLBEG00000019828)	ENSLBEG00000019684	ENSLBEG00000019418	ENSLBEG00000019250	her3 (ENSLBEG00000019224)	GPR153 (ENSLBEG00000019195)	acot7 (ENSLBEG00000019162)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT01000000215262
Perciformes	ANCESTRAL SPECIES	4	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000171598	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000004367	ENSGT00440000033870.a.a
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00390000012265	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000171598	ENSGT00940000154721	ENSGT00390000009368	ENSGT00390000004367	ENSGT00440000033870.a.a
Lumpfish	MODERN SPECIES	22	ENSCLMG00005006191	ENSCLMG00005006190	ENSCLMG00005006189	kazna (ENSCLMG00005006188)	ENSCLMG00005006187	ENSCLMG00005006186	ENSCLMG00005005018	ela2l (ENSCLMG00005004993)	ela2 (ENSCLMG00005003875)	ENSCLMG00005003859	ENSCLMG00005003856	ENSCLMG00005003855	ENSCLMG00005003853	TPRG1L (ENSCLMG00005003852) ##21	wrap73 (ENSCLMG00005003772)	tp73 (ENSCLMG00005003595) ##22	rer1 (ENSCLMG00005003582)	ENSCLMG00005003511	ENSCLMG00005003337	her3 (ENSCLMG00005003332)	GPR153 (ENSCLMG00005003330)	acot7 (ENSCLMG00005003327)	HES2 (ENSCLMG00005003325)	HES2 (ENSCLMG00005003324)	espn (ENSCLMG00005003321)	arhgef16 (ENSCLMG00005003283)	ybx1 (ENSCLMG00005003234)	ENSCLMG00005003225	ppih (ENSCLMG00005003211)	taf10 (ENSCLMG00005003208)	zgc:154075 (ENSCLMG00005003206)
Stickleback	MODERN SPECIES	11	ENSGACG00000006804	znf362b (ENSGACG00000006798)	ENSGACG00000006795	emp3b (ENSGACG00000006781)	zmynd12 (ENSGACG00000006774)	ENSGACG00000006762	foxj3 (ENSGACG00000006756)	ENSGACG00000006752	kazna (ENSGACG00000006736)	tmem51a (ENSGACG00000006734)	ela2l (ENSGACG00000006646)	ela2 (ENSGACG00000006609)	ENSGACG00000006600	TPRG1L (ENSGACG00000006584) ##21	wrap73 (ENSGACG00000006567)	tp73 (ENSGACG00000006547) ##22	rer1 (ENSGACG00000006541)	ENSGACG00000006536	ENSGACG00000006534	ENSGACG00000006529	ENSGACG00000006525	ENSGACG00000006517	ENSGACG00000006510	ENSGACG00000006506	GPR153 (ENSGACG00000006503)	acot7 (ENSGACG00000006473)	hes2.2 (ENSGACG00000006470)	espn (ENSGACG00000006464)	arhgef16 (ENSGACG00000006452)	ybx1 (ENSGACG00000006447)	ppih (ENSGACG00000006443)
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00940000156275.e	ENSGT00940000165031.b	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368	ENSGT00390000004367	ENSGT00440000033870.a.a
Pike perch	MODERN SPECIES	7	emp3b (ENSSLUG00000010361)	zmynd12 (ENSSLUG00000010359)	rimkla (ENSSLUG00000010354)	ENSSLUG00000010350	ENSSLUG00000010348	ENSSLUG00000010345	ENSSLUG00000010340	kazna (ENSSLUG00000010305)	ENSSLUG00000010300	ENSSLUG00000010296	ela2l (ENSSLUG00000010285)	ela2 (ENSSLUG00000010276)	ENSSLUG00000010241	TPRG1L (ENSSLUG00000010228) ##21	wrap73 (ENSSLUG00000010215)	tp73 (ENSSLUG00000010210) ##22	rer1 (ENSSLUG00000010208)	ENSSLUG00000009983	ENSSLUG00000009923	ENSSLUG00000009828	ENSSLUG00000009643	ENSSLUG00000009544	GPR153 (ENSSLUG00000009537)	ENSSLUG00000009533	acot7 (ENSSLUG00000009512)	HES2 (ENSSLUG00000009507)	HES2 (ENSSLUG00000009503)	espn (ENSSLUG00000009491)	arhgef16 (ENSSLUG00000009192)	ybx1 (ENSSLUG00000009119)	ENSSLUG00000009105
Channel bull blenny	MODERN SPECIES	21	znf362b (ENSCGOG00000024043)	ENSCGOG00000024048	emp3b (ENSCGOG00000024052)	zmynd12 (ENSCGOG00000024054)	rimkla (ENSCGOG00000024056)	foxj3 (ENSCGOG00000024059)	ENSCGOG00000024065	kazna (ENSCGOG00000000487)	tmem51a (ENSCGOG00000000540)	ela2l (ENSCGOG00000000543)	ela2 (ENSCGOG00000000581)	ENSCGOG00000000713	ENSCGOG00000000764	TPRG1L (ENSCGOG00000000768) ##21	wrap73 (ENSCGOG00000000788)	tp73 (ENSCGOG00000000862) ##22	rer1 (ENSCGOG00000000876)	ENSCGOG00000000888	ENSCGOG00000000916	ENSCGOG00000000931	ENSCGOG00000000953	her3 (ENSCGOG00000000966)	GPR153 (ENSCGOG00000000967)	acot7 (ENSCGOG00000000968)	HES2 (ENSCGOG00000000974)	HES2 (ENSCGOG00000000983)	ENSCGOG00000000984	ENSCGOG00000000985	arhgef16 (ENSCGOG00000000986)	ENSCGOG00000000987	ybx1 (ENSCGOG00000000989)
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00950000182696.B.b.b	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000165157	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT01030000234528.B.a.a.b.b	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000164692	ENSGT00950000183116.b.a.a.b.a.b.m.a	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.s.a.b	ENSGT00940000156136.t	ENSGT00940000156136.s.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368
Gilthead seabream	MODERN SPECIES	21	zmynd12 (ENSSAUG00010019463)	rimkla (ENSSAUG00010019466)	foxj3 (ENSSAUG00010019471)	ENSSAUG00010019483	kazna (ENSSAUG00010019494)	tmem51a (ENSSAUG00010019516)	ENSSAUG00010019518	ela2l (ENSSAUG00010019519)	ela2 (ENSSAUG00010019521)	ENSSAUG00010019527	ENSSAUG00010019544	ENSSAUG00010019550	appl1 (ENSSAUG00010019568)	TPRG1L (ENSSAUG00010019968) ##21	wrap73 (ENSSAUG00010019979)	tp73 (ENSSAUG00010020000) ##22	rer1 (ENSSAUG00010020028)	ENSSAUG00010000397	ENSSAUG00010000461	ENSSAUG00010000478	ENSSAUG00010000596	ENSSAUG00010000624	ENSSAUG00010000635	ENSSAUG00010000661	ENSSAUG00010000669	her3 (ENSSAUG00010000673)	GPR153 (ENSSAUG00010000678)	acot7 (ENSSAUG00010000683)	HES2 (ENSSAUG00010000693)	HES2 (ENSSAUG00010000697)	ppih (ENSSAUG00010000699)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	20	ENSGT00940000156690.e.a.a	ENSGT00940000156690.e.b	ENSGT00390000006633.a	ENSGT00940000161111	ENSGT00940000163701.b.a.b.b.a	ENSGT00940000157053.u.a #11	ENSGT00940000160014	ENSGT00940000157342.c.b	ENSGT00940000159087	ENSGT00940000164327.a.o.a	ENSGT00940000164327.a.p	ENSGT00950000183116.b.a.a.b.a.b.m.b	ENSGT00980000199193	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136.s.a.b	ENSGT00940000156136.t	ENSGT00940000156136.s.b	ENSGT00730000111482	ENSGT00390000017213.B	ENSGT00940000155229	ENSGT00940000161602.j	ENSGT00940000161602.i	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000153341	ENSGT00940000154721	ENSGT00940000171598	ENSGT00390000009368
European seabass	MODERN SPECIES	14	ENSDLAG00005005840	ENSDLAG00005029258	ENSDLAG00005005936	rimkla (ENSDLAG00005005953)	ENSDLAG00005031489	ENSDLAG00005006014	ENSDLAG00005006037	ENSDLAG00005030992	ENSDLAG00005006197	ENSDLAG00005029786	ENSDLAG00005006263	ENSDLAG00005006294	ENSDLAG00005006409	TPRG1L (ENSDLAG00005028740) ##21	wrap73 (ENSDLAG00005006438)	tp73 (ENSDLAG00005006500) ##22	rer1 (ENSDLAG00005006616)	ENSDLAG00005002894	ENSDLAG00005006934	ENSDLAG00005008026	GPR153 (ENSDLAG00005007011)	ENSDLAG00005006644	ENSDLAG00005010446	her3 (ENSDLAG00005007000)	acot7 (ENSDLAG00005007033)	hes2.2 (ENSDLAG00005007073)	espn (ENSDLAG00005007095)	arhgef16 (ENSDLAG00005007212)	ybx1 (ENSDLAG00005007395)	ppih (ENSDLAG00005007494)	ENSDLAG00005007527
Large yellow croaker	MODERN SPECIES	487	emp3b (ENSLCRG00005018818)	zmynd12 (ENSLCRG00005018821)	rimkla (ENSLCRG00005018822)	foxj3 (ENSLCRG00005018826)	ENSLCRG00005018831	kazna (ENSLCRG00005018834)	tmem51a (ENSLCRG00005018837)	ENSLCRG00005018838	ela2l (ENSLCRG00005018839)	ela2 (ENSLCRG00005018840)	ENSLCRG00005018843	ENSLCRG00005018877	ENSLCRG00005018879	TPRG1L (ENSLCRG00005018880) ##21	wrap73 (ENSLCRG00005018883)	tp73 (ENSLCRG00005018899) ##22	rer1 (ENSLCRG00005019104)	ENSLCRG00005019108	ENSLCRG00005019118	ENSLCRG00005019125	ENSLCRG00005019139	ENSLCRG00005019147	ENSLCRG00005019221	ENSLCRG00005019225	ENSLCRG00005019227	ENSLCRG00005019238	her3 (ENSLCRG00005019247)	GPR153 (ENSLCRG00005019248)	acot7 (ENSLCRG00005019250)	HES2 (ENSLCRG00005019252)	HES2 (ENSLCRG00005019253)
Tiger tail seahorse	MODERN SPECIES	362	znf362b (ENSHCOG00000000545)	ENSHCOG00000020375	emp3b (ENSHCOG00000020477)	zmynd12 (ENSHCOG00000020552)	rimkla (ENSHCOG00000020566)	ENSHCOG00000020582	ENSHCOG00000020594	ENSHCOG00000020601	ENSHCOG00000020616	kazna (ENSHCOG00000020645)	tmem51a (ENSHCOG00000020650)	ENSHCOG00000020657	ENSHCOG00000020750	TPRG1L (ENSHCOG00000020783) ##21	wrap73 (ENSHCOG00000020819)	tp73 (ENSHCOG00000020855) ##22	rer1 (ENSHCOG00000000621)	tas1r2.1 (ENSHCOG00000020981)
Pinecone sodierfish	MODERN SPECIES	21	znf740b (ENSMMDG00005011438)	zgc:174906 (ENSMMDG00005011435)	tafa3b (ENSMMDG00005011432)	ENSMMDG00005011430	ENSMMDG00005010615	ENSMMDG00005010517	wnt2bb (ENSMMDG00005010512)	ENSMMDG00005010510	ENSMMDG00005010508	ENSMMDG00005010506	ENSMMDG00005010505	ENSMMDG00005010501	ENSMMDG00005010499	TPRG1L (ENSMMDG00005010498) ##21	wrap73 (ENSMMDG00005010353)	tp73 (ENSMMDG00005010339) ##22	rer1 (ENSMMDG00005010334)	tas1r2.1 (ENSMMDG00005010259)	her3 (ENSMMDG00005010255)	GPR153 (ENSMMDG00005010253)	acot7 (ENSMMDG00005010252)	ENSMMDG00005010250	espn (ENSMMDG00005010246)	arhgef16 (ENSMMDG00005010103)	ybx1 (ENSMMDG00005010084)	ENSMMDG00005010076	ppih (ENSMMDG00005010065)	taf10 (ENSMMDG00005010054)	zgc:154075 (ENSMMDG00005010050)	ENSMMDG00005010048	EMC1 (ENSMMDG00005007259)
Cod	MODERN SPECIES		ENSGMOG00000035344	ENSGMOG00000016022	ENSGMOG00000016006	rimkla (ENSGMOG00000015976)	ENSGMOG00000034990	ENSGMOG00000025673	ENSGMOG00000015876	ENSGMOG00000022833	ENSGMOG00000015762	ENSGMOG00000015740	ENSGMOG00000015725	ENSGMOG00000015664	ENSGMOG00000015614	TPRG1L (ENSGMOG00000015598) ##21	wrap73 (ENSGMOG00000015574)	tp73 (ENSGMOG00000015539) ##22	rer1 (ENSGMOG00000015529)	tas1r2.1 (ENSGMOG00000026486)	her3 (ENSGMOG00000015387)	GPR153 (ENSGMOG00000015366)	acot7 (ENSGMOG00000015346)	HES2 (ENSGMOG00000036633)	HES2 (ENSGMOG00000015330)	espn (ENSGMOG00000015276)	arhgef16 (ENSGMOG00000015237)	ybx1 (ENSGMOG00000035560)	ppih (ENSGMOG00000015194)	ENSGMOG00000015178	ENSGMOG00000015151	ENSGMOG00000034917	ENSGMOG00000015102
Protacanthopterygii	ANCESTRAL SPECIES	87	ENSGT00700000104550.a.j.b	ENSGT00940000163259.b	ENSGT00940000153876.A	ENSGT00940000158337	ENSGT00940000154757.xb.a.b	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137	ENSGT00940000156136	ENSGT00730000111482	ENSGT00390000017213.B.e	ENSGT00940000155229	ENSGT00390000017213.B.f	ENSGT00940000161602.h	ENSGT00940000161602.g	ENSGT00940000160408	ENSGT01030000234571.a.b	ENSGT00940000154721	ENSGT00940000153341	ENSGT01000000216541.A	ENSGT00390000009368	ENSGT00390000004367
Salmoninae	ANCESTRAL SPECIES	163	ENSGT00940000163259.b.e	ENSGT00940000153876.A.f	ENSGT00940000158337.f	ENSGT00940000154757.xb.a.b	ENSGT00940000157064.a.a.c	ENSGT00930000151037	ENSGT00940000157064.a.a.d	ENSGT00940000160682.a.c	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692.e	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137.x	ENSGT00940000156136.cb	ENSGT00730000111482	ENSGT00390000017213.B.e	ENSGT00940000155229	ENSGT00940000160408.c.a	ENSGT01030000234571.a.b	ENSGT00940000153341.h	ENSGT00940000154721	ENSGT00390000009368.g	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00940000156759.a.a	ENSGT00940000157867.a.b
Salmoninae_a	ANCESTRAL SPECIES	15	ENSGT00940000159925.c	ENSGT00700000104550.a.j.b.c.a	ENSGT00940000163259.b.f	ENSGT00940000153876.A.e	ENSGT00940000158337.e	ENSGT00930000151037	ENSGT00940000157064.a.a.d	ENSGT00940000160682.a.c	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692.e	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137.x	ENSGT00940000156136.cb	ENSGT00730000111482	ENSGT00390000017213.B.e	ENSGT00940000155229	ENSGT00940000160408.c.a	ENSGT01030000234571.a.b	ENSGT00940000153341.h	ENSGT00940000154721	ENSGT01000000216541.B	ENSGT00390000009368.g	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00940000156759.a.a
Salmo	ANCESTRAL SPECIES	39	ENSGT00700000104550.a.j.b.c.a	ENSGT00940000163259.b.f	ENSGT00940000153876.A.e	ENSGT00940000158337.e	ENSGT00970000193381.a.a.c.b.a.a.a.b.a	ENSGT00930000151037	ENSGT00940000157064.a.a.d	ENSGT00940000160682.a.c	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692.e	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137.x	ENSGT00940000156136.cb.d	ENSGT00730000111482	ENSGT00390000017213.B.e	ENSGT00940000155229	ENSGT00940000160408.c.a	ENSGT01030000234571.a.b	ENSGT00940000153341.h	ENSGT00940000154721	ENSGT01000000216541.B	ENSGT00390000009368.g	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00940000156759.a.a
River trout	MODERN SPECIES	20	RNF223 (ENSSTUG00000041542)	ENSSTUG00000041552	ENSSTUG00000041620	agrn (ENSSTUG00000006242)	ENSSTUG00000008016	mtor (ENSSTUG00000008045)	angptl7 (ENSSTUG00000008611)	ENSSTUG00000008620	ENSSTUG00000008624	BRPF3 (ENSSTUG00000008700)	plod1a (ENSSTUG00000009059)	mfn2 (ENSSTUG00000014242)	ENSSTUG00000014475	TPRG1L (ENSSTUG00000014585) ##21	wrap73 (ENSSTUG00000014625)	tp73 (ENSSTUG00000014963) ##22	rer1 (ENSSTUG00000015691)	tas1r2.1 (ENSSTUG00000015738)	ENSSTUG00000015983	GPR153 (ENSSTUG00000015989)	acot7 (ENSSTUG00000016001)	espn (ENSSTUG00000016038)	arhgef16 (ENSSTUG00000016065)	ybx1 (ENSSTUG00000016214)	ppih (ENSSTUG00000016277)	ENSSTUG00000016388	taf10 (ENSSTUG00000016393)	zgc:154075 (ENSSTUG00000016409)	ENSSTUG00000016430	ERRFI1 (ENSSTUG00000016449)	PAX7 (ENSSTUG00000016476)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000055414	ENSSSAG00000055221	ENSSSAG00000111976	ENSSSAG00000047358	ENSSSAG00000047263	ENSSSAG00000047251	ENSSSAG00000046715	ENSSSAG00000103364	mapk13 (ENSSSAG00000046558)	ENSSSAG00000046331	plod1a (ENSSSAG00000012359)	ENSSSAG00000009334	ENSSSAG00000117394	ENSSSAG00000008848	wrap73 (ENSSSAG00000008742)	ENSSSAG00000007794 ##22	rer1 (ENSSSAG00000007735)	tas1r2.1 (ENSSSAG00000007547)	her3 (ENSSSAG00000083530)	gpr153 (ENSSSAG00000007523)	acot7 (ENSSSAG00000007517)	espn (ENSSSAG00000007498)	arhgef16 (ENSSSAG00000007423)	ybx1 (ENSSSAG00000007374)	ppih (ENSSSAG00000007353)	TAF10 (ENSSSAG00000007326)	ENSSSAG00000007306	ENSSSAG00000007294	ENSSSAG00000007286	ENSSSAG00000006052	kcnab2 (ENSSSAG00000005881)
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000159925.c	ENSGT00700000104550.a.j.b.c.a	ENSGT00940000163259.b.f	ENSGT00940000153876.A.e	ENSGT00940000158337.e	ENSGT00930000151037	ENSGT00940000157064.a.a.d	ENSGT00940000160682.a.c	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692.e	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137.x	ENSGT00940000156136.cb	ENSGT00730000111482	ENSGT00390000017213.B.e	ENSGT00940000155229	ENSGT00940000160408.c.a	ENSGT01030000234571.a.b	ENSGT00940000153341.h	ENSGT00940000154721	ENSGT01000000216541.B	ENSGT00390000009368.g	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00940000156759.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00940000159925.c	ENSGT00700000104550.a.j.b.c.a	ENSGT00940000163259.b.f	ENSGT00940000153876.A.e	ENSGT00940000158337.e	ENSGT00930000151037	ENSGT00940000157064.a.a.d	ENSGT00940000160682.a.c	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000164692.e	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137.x	ENSGT00940000156136.cb	ENSGT00730000111482	ENSGT00390000017213.B.e	ENSGT00940000155229	ENSGT00940000160408.c.a	ENSGT01030000234571.a.b	ENSGT00940000153341.h	ENSGT00940000154721	ENSGT01000000216541.B	ENSGT00390000009368.g	ENSGT00390000004367	ENSGT01000000215262	ENSGT00440000033870.a.a	ENSGT00940000156759.a.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	7	PREX1 (ENSOTSG00005044675)	ENSOTSG00005044641	RNF223 (ENSOTSG00005044635)	ENSOTSG00005044115	agrn (ENSOTSG00005042937)	angptl7 (ENSOTSG00005042934)	mtor (ENSOTSG00005042924)	ENSOTSG00005042918	ENSOTSG00005042912	BRPF3 (ENSOTSG00005042911)	plod1a (ENSOTSG00005029411)	mfn2 (ENSOTSG00005028934)	ENSOTSG00005028014	TPRG1L (ENSOTSG00005027996) ##21	wrap73 (ENSOTSG00005026945)	tp73 (ENSOTSG00005026914) ##22	rer1 (ENSOTSG00005026909)	ENSOTSG00005026907	her3 (ENSOTSG00005026906)	GPR153 (ENSOTSG00005026905)	acot7 (ENSOTSG00005026899)	espn (ENSOTSG00005026897)	espn (ENSOTSG00005026894)	arhgef16 (ENSOTSG00005026888)	ybx1 (ENSOTSG00005026868)	ENSOTSG00005026865	ppih (ENSOTSG00005026861)	taf10 (ENSOTSG00005026859)	zgc:154075 (ENSOTSG00005026857)	ENSOTSG00005026856	ERRFI1 (ENSOTSG00005026855)
Chinook salmon	MODERN SPECIES	44			RNF223 (ENSOTSG00005042043)	ENSOTSG00005042054	agrn (ENSOTSG00005043827)	mtor (ENSOTSG00005047135)	angptl7 (ENSOTSG00005024701)	ENSOTSG00005024703	ENSOTSG00005024705	BRPF3 (ENSOTSG00005024725)	plod1a (ENSOTSG00005024750)	mfn2 (ENSOTSG00005036948)	ENSOTSG00005037254	TPRG1L (ENSOTSG00005037256) ##21	wrap73 (ENSOTSG00005037261)	tp73 (ENSOTSG00005037317) ##22	rer1 (ENSOTSG00005038196)	ENSOTSG00005038198	her3 (ENSOTSG00005039239)	GPR153 (ENSOTSG00005039241)	acot7 (ENSOTSG00005039248)	espn (ENSOTSG00005039257)	espn (ENSOTSG00005039261)	arhgef16 (ENSOTSG00005039270)	ybx1 (ENSOTSG00005039431)	ppih (ENSOTSG00005039498)	ENSOTSG00005039499	taf10 (ENSOTSG00005039500)	zgc:154075 (ENSOTSG00005039501)	ENSOTSG00005039503	ERRFI1 (ENSOTSG00005039504)
Coho salmon	MODERN SPECIES	8	PREX1 (ENSOKIG00005040615)	ENSOKIG00005040031	RNF223 (ENSOKIG00005039970)	ENSOKIG00005039623	agrn (ENSOKIG00005031562)	angptl7 (ENSOKIG00005031143)	mtor (ENSOKIG00005030732)	ENSOKIG00005030693	ENSOKIG00005030457	BRPF3 (ENSOKIG00005030204)	plod1a (ENSOKIG00005023099)	mfn2 (ENSOKIG00005021705)	ENSOKIG00005020854	TPRG1L (ENSOKIG00005020775) ##21	wrap73 (ENSOKIG00005020703)	tp73 (ENSOKIG00005020492) ##22	rer1 (ENSOKIG00005020445)	tas1r2.1 (ENSOKIG00005019918)	her3 (ENSOKIG00005019861)	GPR153 (ENSOKIG00005019848)	acot7 (ENSOKIG00005019812)	espn (ENSOKIG00005019792)	arhgef16 (ENSOKIG00005019722)	ybx1 (ENSOKIG00005019659)	ENSOKIG00005019635	ppih (ENSOKIG00005019612)	taf10 (ENSOKIG00005019596)	zgc:154075 (ENSOKIG00005019572)	ENSOKIG00005019555	ERRFI1 (ENSOKIG00005019547)	PAX7 (ENSOKIG00005018925)
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000038583	ENSOMYG00000038575	ENSOMYG00000038351	ENSOMYG00000035846	ENSOMYG00000065651	ENSOMYG00000035189	ENSOMYG00000035019	ENSOMYG00000049935	ENSOMYG00000034792	ENSOMYG00000034768	plod1a (ENSOMYG00000025960)	ENSOMYG00000023650	ENSOMYG00000022633	TPRG1L (ENSOMYG00000022527) ##21	wrap73 (ENSOMYG00000022404)	tp73 (ENSOMYG00000021881) ##22	rer1 (ENSOMYG00000021774)	tas1r2.1 (ENSOMYG00000021237)	HES3 (ENSOMYG00000073666)	GPR153 (ENSOMYG00000021139)	ENSOMYG00000053391	acot7 (ENSOMYG00000021122)	ENSOMYG00000021109	espn (ENSOMYG00000021104)	arhgef16 (ENSOMYG00000021083)	ybx1 (ENSOMYG00000021040)	ENSOMYG00000069286	ENSOMYG00000021028	ppih (ENSOMYG00000021008)	taf10 (ENSOMYG00000020995)	ENSOMYG00000020982
Huchen	MODERN SPECIES	118													ENSHHUG00000027857	TPRG1L (ENSHHUG00000027849) ##21	wrap73 (ENSHHUG00000027837)	tp73 (ENSHHUG00000027828) ##22	rer1 (ENSHHUG00000027702)	tas1r2.1 (ENSHHUG00000027693)	her3 (ENSHHUG00000027688)	GPR153 (ENSHHUG00000027650)	acot7 (ENSHHUG00000027612)	ENSHHUG00000027606	ENSHHUG00000027602	ENSHHUG00000027601	espn (ENSHHUG00000027598)	arhgef16 (ENSHHUG00000027570)	ybx1 (ENSHHUG00000027462)	ppih (ENSHHUG00000027438)	taf10 (ENSHHUG00000027374)	zgc:154075 (ENSHHUG00000027364)	odad1 (ENSHHUG00000027355)
Northern pike	MODERN SPECIES	11	ENSELUG00000004270	RNF223 (ENSELUG00000004313)	ENSELUG00000004355	agrn (ENSELUG00000004708)	ENSELUG00000004804	angptl7 (ENSELUG00000004817)	mtor (ENSELUG00000004972)	ENSELUG00000005027	ENSELUG00000005040	MAPK13 (ENSELUG00000005103)	BRPF3 (ENSELUG00000005391)	mfn2 (ENSELUG00000005449)	ENSELUG00000005506	TPRG1L (ENSELUG00000005531) ##21	wrap73 (ENSELUG00000005581)	tp73 (ENSELUG00000005631) ##22	RER1 (ENSELUG00000032430)	her3 (ENSELUG00000006063)	GPR153 (ENSELUG00000006079)	acot7 (ENSELUG00000006155)	HES2 (ENSELUG00000006183)	HES2 (ENSELUG00000001290)	espn (ENSELUG00000006252)	arhgef16 (ENSELUG00000006277)	ENSELUG00000006300	ybx1 (ENSELUG00000006362)	taf10 (ENSELUG00000034559)	zgc:154075 (ENSELUG00000006502)	ENSELUG00000006527	PAX7 (ENSELUG00000006545)	KCNAB2 (ENSELUG00000006605)
Osteoglossiformes	ANCESTRAL SPECIES	44	ENSGT00940000158374.c	ENSGT00510000048446	ENSGT00390000012490	ENSGT00940000159291	ENSGT00940000169392	ENSGT00940000171201	ENSGT00530000065390	ENSGT00940000165284	ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00940000181914	ENSGT00940000164692	ENSGT00390000001652.f.a ##21	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b ##22	ENSGT00510000047137.z	ENSGT00730000111482.b	ENSGT00390000017213.B.a	ENSGT00940000155229	ENSGT00940000161602.e	ENSGT00940000160408.h	ENSGT01030000234571.a.b.e	ENSGT00940000153341.l.b	ENSGT00940000154721	ENSGT00390000012058.c.b.d	ENSGT00940000154171.A	ENSGT01030000234528.B.a.a.b.a	ENSGT01030000234528.B.a.a.a	ENSGT00390000009278.b	ENSGT00940000154570.a.a.g
P. kingsleyae	MODERN SPECIES	37	ENSPKIG00000014315	pex10 (ENSPKIG00000014293)	mthfr (ENSPKIG00000014252)	CLCN6 (ENSPKIG00000014156)	ENSPKIG00000014121	ENSPKIG00000014100	nppal (ENSPKIG00000014077)	ENSPKIG00000014051	si:dkeyp-104h9.5 (ENSPKIG00000014031)	plod1a (ENSPKIG00000013959)	mfn2 (ENSPKIG00000013870)	ENSPKIG00000013839	ENSPKIG00000013811	TPRG1L (ENSPKIG00000013784) ##21	wrap73 (ENSPKIG00000013725)	tp73 (ENSPKIG00000013648) ##22	rer1 (ENSPKIG00000013532)	her3 (ENSPKIG00000013493)	GPR153 (ENSPKIG00000013452)	acot7 (ENSPKIG00000013344)	HES2 (ENSPKIG00000013282)	HES2 (ENSPKIG00000013260)	ESPN (ENSPKIG00000013227)	arhgef16 (ENSPKIG00000013114)	ybx1 (ENSPKIG00000013063)	ppih (ENSPKIG00000012944)	EFHD2 (ENSPKIG00000012914)	ENSPKIG00000012899	ENSPKIG00000012873	ela2 (ENSPKIG00000012835)	ela2l (ENSPKIG00000012799)
Asian bonytongue	MODERN SPECIES	11	pex10 (ENSSFOG00015009982)	ENSSFOG00015010095	mthfr (ENSSFOG00015010018)	CLCN6 (ENSSFOG00015010129)	ENSSFOG00015010216	ENSSFOG00015010266	nppal (ENSSFOG00015010310)	si:dkeyp-104h9.5 (ENSSFOG00015027990)	plod1a (ENSSFOG00015010374)	mfn2 (ENSSFOG00015010453)	ENSSFOG00015010496	ENSSFOG00015028961	ENSSFOG00015010518	TPRG1L (ENSSFOG00015010602) ##21	wrap73 (ENSSFOG00015010615)	tp73 (ENSSFOG00015010669) ##22	ENSSFOG00015027502	rer1 (ENSSFOG00015010714)	GPR153 (ENSSFOG00015010738)	acot7 (ENSSFOG00015010765)	HES2 (ENSSFOG00015010823)	HES2 (ENSSFOG00015010831)	ESPN (ENSSFOG00015010847)	arhgef16 (ENSSFOG00015010868)	ENSSFOG00015026087	ppih (ENSSFOG00015010908)	EFHD2 (ENSSFOG00015024903)	fhad1 (ENSSFOG00015011033)	ela2 (ENSSFOG00015011073)	ela2l (ENSSFOG00015011097)	tmem51a (ENSSFOG00015028218)
Spotted gar	MODERN SPECIES	664	plch2a (ENSLOCG00000005648)	pex10 (ENSLOCG00000005635)	mthfr (ENSLOCG00000005606)	CLCN6 (ENSLOCG00000005577)	nppb (ENSLOCG00000005558)	ENSLOCG00000005537	nppal (ENSLOCG00000005514)	ENSLOCG00000005508	si:dkeyp-104h9.5 (ENSLOCG00000005478)	plod1a (ENSLOCG00000005408)	mfn2 (ENSLOCG00000005375)	ENSLOCG00000018084	ENSLOCG00000005336	TPRG1L (ENSLOCG00000005319) ##21	wrap73 (ENSLOCG00000005279)	tp73 (ENSLOCG00000005255) ##22	ENSLOCG00000005224	ENSLOCG00000005211	ENSLOCG00000005180	her3 (ENSLOCG00000005161)	GPR153 (ENSLOCG00000005146)	acot7 (ENSLOCG00000005099)	hes2.2 (ENSLOCG00000005083)	ENSLOCG00000005066	espn (ENSLOCG00000005036)	arhgef16 (ENSLOCG00000005013)	CHD5 (ENSLOCG00000004944)	rpl22 (ENSLOCG00000004916)	rnf207b (ENSLOCG00000004882)	icmt (ENSLOCG00000004867)	agtrap (ENSLOCG00000004850)
Reedfish	MODERN SPECIES	16	pex10 (ENSECRG00000006288)	mthfr (ENSECRG00000006275)	ENSECRG00000006264	CLCN6 (ENSECRG00000006227)	ENSECRG00000006203	ENSECRG00000006196	ENSECRG00000006188	ENSECRG00000006181	si:dkeyp-104h9.5 (ENSECRG00000006176)	plod1a (ENSECRG00000006159)	mfn2 (ENSECRG00000006144)	ENSECRG00000006133	PRDM16 (ENSECRG00000006113)	TPRG1L (ENSECRG00000006096) ##21	wrap73 (ENSECRG00000006086)	tp73 (ENSECRG00000006067) ##22	rer1 (ENSECRG00000006055)	tas1r2.1 (ENSECRG00000006026)	GPR153 (ENSECRG00000007100)	acot7 (ENSECRG00000007073)	hes2.2 (ENSECRG00000007049)	espn (ENSECRG00000007038)	arhgef16 (ENSECRG00000007020)	MEGF6 (ENSECRG00000006986)	akr7a3 (ENSECRG00000006965)	MRTO4 (ENSECRG00000006957)	ENSECRG00000006934	ENSECRG00000006921	IFFO2 (ENSECRG00000006906)	aldh4a1 (ENSECRG00000006888)	tas1r1 (ENSECRG00000006856)
Elephant shark	MODERN SPECIES	1578	ENSCMIG00000003935	hes2.1 (ENSCMIG00000003939)	acot7 (ENSCMIG00000003946)	GPR153 (ENSCMIG00000003950)	MMEL1 (ENSCMIG00000003990)	ENSCMIG00000004038	ENSCMIG00000004040	ENSCMIG00000004044	PRDM16 (ENSCMIG00000004084)	ENSCMIG00000004090	arhgef16 (ENSCMIG00000004096)	ENSCMIG00000004115	ENSCMIG00000004135	TPRG1L (ENSCMIG00000004138) ##21	wrap73 (ENSCMIG00000004154)	tp73 (ENSCMIG00000004177) ##22	prkcz (ENSCMIG00000004370)	skia (ENSCMIG00000004712)	ENSCMIG00000004714	rer1 (ENSCMIG00000004721)	pex10 (ENSCMIG00000004729)	ENSCMIG00000004759	si:ch211-251b21.1 (ENSCMIG00000004807)	ENSCMIG00000004809	PANK4 (ENSCMIG00000004866)	ENSCMIG00000005005	vamp3 (ENSCMIG00000005008)	CAMTA1 (ENSCMIG00000005013)	ENSCMIG00000005022	dnajc11a (ENSCMIG00000005032)	ENSCMIG00000005054