Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00950000182930.B #8	ENSGT00860000135739 #9	ENSGT00940000153783.b.b.c.a.b #10	ENSGT00550000074917 #11	ENSGT00940000159828 #12	ENSGT00940000157053 #13	ENSGT00940000161858 #14	ENSGT00950000183084.b.b #15	ENSGT00940000162610 #16	ENSGT00510000047914.b #17	ENSGT00940000162172 #18	ENSGT00940000156311 #19	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #25	ENSGT00730000111162 #26	ENSGT00390000006126 #27	ENSGT01090000260076.a #29	ENSGT00940000153270.b.b #30	ENSGT00390000001750 #31	ENSGT00390000003511 #32	ENSGT00390000011058.b #33	ENSGT00940000155929 #34	ENSGT01050000244976.b.a #35	ENSGT00940000156634 #36	ENSGT00940000160327 #37	ENSGT00940000159448	ENSGT00550000074851
Equus	ANCESTRAL SPECIES	19	ENSGT00950000182930.A.a #7	ENSGT00950000182930.B #8	ENSGT00860000135739 #9	ENSGT00940000153783.b.b.c.a.b #10	ENSGT00550000074917 #11	ENSGT00940000159828 #12	ENSGT00940000157053 #13	ENSGT00940000161858 #14	ENSGT00950000183084.b.b #15	ENSGT00940000162610 #16	ENSGT00510000047914.b #17	ENSGT00940000162172 #18	ENSGT00940000156311 #19	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #25	ENSGT00730000111162 #26	ENSGT00390000006126 #27	ENSGT01090000260076.a #29	ENSGT00940000153270.b.b #30	ENSGT00390000001750 #31	ENSGT00390000003511 #32	ENSGT00390000011058.b #33	ENSGT00940000155929 #34	ENSGT01050000244976.b.a #35	ENSGT00940000156634 #36	ENSGT00940000160327 #37	ENSGT00940000159448	ENSGT00550000074851
Donkey	MODERN SPECIES	25	HRG (ENSEASG00005014069) #7	KNG1 (ENSEASG00005014080) #8	ENSEASG00005014092 #9	EIF4A2 (ENSEASG00005014096) #10	RFC4 (ENSEASG00005014105) #11	ADIPOQ (ENSEASG00005033942) #12	ST6GAL1 (ENSEASG00005014107) #13	RTP1 (ENSEASG00005031497) #14	MASP1 (ENSEASG00005014109) #15	ENSEASG00005014111 #16	SST (ENSEASG00005028121) #17	RTP2 (ENSEASG00005014113) #18	BCL6 (ENSEASG00005014114) #19	LPP (ENSEASG00005014117) #20	TPRG1 (ENSEASG00005000079) #21	TP63 (ENSEASG00005000161) #22	P3H2 (ENSEASG00005000187) #23	ENSEASG00005037818 #24	CLDN1 (ENSEASG00005025461) #25	CLDN16 (ENSEASG00005038191) #26	TMEM207 (ENSEASG00005025466) #27	ENSEASG00005000289 #28	ENSEASG00005029545 #29	GMNC (ENSEASG00005038756) #30	OSTN (ENSEASG00005000308) #31	UTS2B (ENSEASG00005027479) #32	CCDC50 (ENSEASG00005000324) #33	FGF12 (ENSEASG00005025383) #34	MB21D2 (ENSEASG00005000343) #35	PLAAT1 (ENSEASG00005000347) #36	ATP13A5 (ENSEASG00005000377) #37
Horse	MODERN SPECIES	10	HRG (ENSECAG00000013388) #7	KNG1 (ENSECAG00000014646) #8	ENSECAG00000028550 #9	EIF4A2 (ENSECAG00000021223) #10	RFC4 (ENSECAG00000022599) #11	ADIPOQ (ENSECAG00000002962) #12	ST6GAL1 (ENSECAG00000003569) #13	RTP1 (ENSECAG00000006754) #14	MASP1 (ENSECAG00000008259) #15	RTP4 (ENSECAG00000023264) #16	SST (ENSECAG00000023368) #17	RTP2 (ENSECAG00000000272) #18	BCL6 (ENSECAG00000004556) #19	LPP (ENSECAG00000014723) #20	TPRG1 (ENSECAG00000016072) #21	TP63 (ENSECAG00000018546) #22	ENSECAG00000044253	P3H2 (ENSECAG00000008971) #23	CLDN1 (ENSECAG00000021074) #25	CLDN16 (ENSECAG00000021850) #26	TMEM207 (ENSECAG00000033613) #27	IL1RAP (ENSECAG00000005083) #29	GMNC (ENSECAG00000027817) #30	OSTN (ENSECAG00000011502) #31	UTS2B (ENSECAG00000014512) #32	CCDC50 (ENSECAG00000014753) #33	FGF12 (ENSECAG00000024399) #34	MB21D2 (ENSECAG00000004811) #35	PLAAT1 (ENSECAG00000024565) #36	ATP13A5 (ENSECAG00000024692) #37	ATP13A4 (ENSECAG00000013520)
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00940000153783.b.b.c.a.a.a ##10	ENSGT01100000264223	ENSGT00940000153783.b.b.c.a.b #10	ENSGT00550000074917 #11	ENSGT00940000159828 #12	ENSGT00940000157053 #13	ENSGT00940000161858 #14	ENSGT00950000183084.b.b #15	ENSGT00940000162610 #16	ENSGT00510000047914.b #17	ENSGT00940000162172 #18	ENSGT00940000156311 #19	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #25	ENSGT00730000111162 #26	ENSGT00390000006126 #27	ENSGT01090000260076.a #29	ENSGT00940000153270.b.b #30	ENSGT00390000001750 #31	ENSGT00390000003511 #32	ENSGT00390000011058.b #33	ENSGT00940000155929 #34	ENSGT01050000244976.b.a #35	ENSGT00940000156634 #36	ENSGT00940000160327 #37	ENSGT00940000159448	ENSGT00550000074851
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00950000182930.B #8	ENSGT01100000264223	ENSGT00940000153783.b.b.c.a.b #10	ENSGT00550000074917 #11	ENSGT00940000159828 #12	ENSGT00940000157053 #13	ENSGT00940000161858 #14	ENSGT00950000183084.b.b #15	ENSGT00940000162610 #16	ENSGT00510000047914.b #17	ENSGT00940000162172 #18	ENSGT00940000156311 #19	ENSGT00970000194716	ENSGT00940000156022.b #20	ENSGT00390000001652.f.b #21	ENSGT00950000183153.c.b.a.a #22	ENSGT00940000159593 #23	ENSGT00940000155387 #25	ENSGT00730000111162 #26	ENSGT00390000006126 #27	ENSGT01090000260076.a #29	ENSGT00940000153270.b.b #30	ENSGT00390000001750 #31	ENSGT00390000003511 #32	ENSGT00390000011058.b #33	ENSGT00940000155929 #34	ENSGT01050000244976.b.a #35	ENSGT00940000156634 #36	ENSGT00940000160327 #37	ENSGT00940000159448	ENSGT00550000074851
Greater horseshoe bat	MODERN SPECIES	11	ENSRFEG00010010830	ENSRFEG00010010586 #10	RFC4 (ENSRFEG00010010503) #11	ADIPOQ (ENSRFEG00010010452) #12	ENSRFEG00010010432	ST6GAL1 (ENSRFEG00010010358) #13	RTP1 (ENSRFEG00010010304) #14	MASP1 (ENSRFEG00010010180) #15	ENSRFEG00010010132 #16	SST (ENSRFEG00010020558) #17	RTP2 (ENSRFEG00010020536) #18	ENSRFEG00010020523	BCL6 (ENSRFEG00010020473) #19	LPP (ENSRFEG00010020443) #20	TPRG1 (ENSRFEG00010020397) #21	TP63 (ENSRFEG00010019772) #22	P3H2 (ENSRFEG00010019654) #23	CLDN1 (ENSRFEG00010019632) #25	CLDN16 (ENSRFEG00010019557) #26	TMEM207 (ENSRFEG00010019513) #27	IL1RAP (ENSRFEG00010019458) #29	GMNC (ENSRFEG00010019408) #30	OSTN (ENSRFEG00010019354) #31	UTS2B (ENSRFEG00010019299) #32	CCDC50 (ENSRFEG00010019227) #33	FGF12 (ENSRFEG00010019116) #34	MB21D2 (ENSRFEG00010019087) #35	PLAAT1 (ENSRFEG00010019048) #36	ATP13A5 (ENSRFEG00010018763) #37	ATP13A4 (ENSRFEG00010018636)	OPA1 (ENSRFEG00010018391)
Microbat	MODERN SPECIES	951	HRG (ENSMLUG00000013346) #7	KNG1 (ENSMLUG00000013353) #8	ENSMLUG00000022708	EIF4A2 (ENSMLUG00000016392) #10	RFC4 (ENSMLUG00000016401) #11	ADIPOQ (ENSMLUG00000000440) #12	ST6GAL1 (ENSMLUG00000015302) #13	RTP1 (ENSMLUG00000006162) #14	MASP1 (ENSMLUG00000006168) #15	ENSMLUG00000006180 #16	SST (ENSMLUG00000012903) #17	RTP2 (ENSMLUG00000015480) #18	BCL6 (ENSMLUG00000012905) #19	LPP (ENSMLUG00000009198) #20	TPRG1 (ENSMLUG00000009219) #21	TP63 (ENSMLUG00000015597) #22	P3H2 (ENSMLUG00000015613) #23	CLDN1 (ENSMLUG00000015642) #25	CLDN16 (ENSMLUG00000001753) #26	IL1RAP (ENSMLUG00000005737) #29	GMNC (ENSMLUG00000012539) #30	OSTN (ENSMLUG00000017299) #31	ENSMLUG00000024518	CCDC50 (ENSMLUG00000012788) #33	FGF12 (ENSMLUG00000010464) #34	PLAAT1 (ENSMLUG00000008414) #36	ATP13A5 (ENSMLUG00000010577) #37	ATP13A4 (ENSMLUG00000008427)	OPA1 (ENSMLUG00000008480)	ENSMLUG00000008079	HES1 (ENSMLUG00000008549)
Megabat	MODERN SPECIES	2930															TPRG1 (ENSPVAG00000009055) #21	TP63 (ENSPVAG00000009056) #22	P3H2 (ENSPVAG00000009057) #23