Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000160014	ENSGT00940000162266	ENSGT00940000157317	ENSGT00390000006208.a.c	ENSGT00940000165238 #10	ENSGT00940000154823 #11	ENSGT00940000156014 #13	ENSGT00940000159212.a #14	ENSGT00510000047059.l #15	ENSGT00390000008135 #16	ENSGT00940000153883.b #17	ENSGT00940000154540.a #18	ENSGT00940000161327 #19	ENSGT00390000006030.d.a.b #20	ENSGT00390000014189.g.a	ENSGT00950000183122.B #22	ENSGT00390000001752 #23	ENSGT00940000157044.e.b ##24	ENSGT00940000157044.f #24	ENSGT00530000064242.b #25	ENSGT00440000038159 #26	ENSGT00940000158139 #27	ENSGT00390000008983.b	ENSGT00940000162897 #28	ENSGT00940000154631 #29	ENSGT00390000003115 #30	ENSGT00950000183018.a.d #31	ENSGT00530000064130	ENSGT00950000182890.A.a.b.b.b	ENSGT00940000161752 #33	ENSGT00390000011179 #34
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000160014	ENSGT00940000162266	ENSGT00940000157317	ENSGT00390000006208.a.c	ENSGT00940000165238 #10	ENSGT00940000154823 #11	ENSGT00940000156014 #13	ENSGT00940000159212.a #14	ENSGT00510000047059.l #15	ENSGT00390000008135 #16	ENSGT00940000153883.b #17	ENSGT00940000154540.a #18	ENSGT00940000161327 #19	ENSGT00390000006030.d.a.b #20	ENSGT00390000014189.g.a	ENSGT00950000183122.B #22	ENSGT00390000001752 #23	ENSGT00940000157044.f #24	ENSGT00530000064242.b #25	ENSGT00440000038159 #26	ENSGT00940000158139 #27	ENSGT00390000008983.b	ENSGT00940000162897 #28	ENSGT00940000154631 #29	ENSGT00390000003115 #30	ENSGT00950000183018.a.d #31	ENSGT00530000064130	ENSGT00950000182890.A.a.b.b.b	ENSGT00940000161752 #33	ENSGT00390000011179 #34	ENSGT00940000154390.A.j #35
Guinea pig	MODERN SPECIES	66	SEC61G (ENSCPOG00000038256) #7	EGFR (ENSCPOG00000000040) #8	ENSCPOG00000036782 #9	ENSCPOG00000021348 #10	ENSCPOG00000023096 #11	ENSCPOG00000006355 #12	GALNT17 (ENSCPOG00000005588) #13	CALN1 (ENSCPOG00000039564) #14	ENSCPOG00000011182 #15	SBDS (ENSCPOG00000036143) #16	TMEM248 (ENSCPOG00000000830) #17	RABGEF1 (ENSCPOG00000015358) #18	KCTD7 (ENSCPOG00000036965) #19	TPST1 (ENSCPOG00000004518) #20	ENSCPOG00000003188 #21	ASL (ENSCPOG00000020705) #22	GUSB (ENSCPOG00000004691) #23	VKORC1L1 (ENSCPOG00000040223) #24	NUPR2 (ENSCPOG00000036999) #25	CHCHD2 (ENSCPOG00000012413) #26	PHKG1 (ENSCPOG00000000387) #27	SUMF2 (ENSCPOG00000006993) #28	CCT6A (ENSCPOG00000006992) #29	PSPH (ENSCPOG00000039209) #30	NIPSNAP2 (ENSCPOG00000004556) #31	ENSCPOG00000038154 #32	SEPTIN14 (ENSCPOG00000009996) #33	MRPS24 (ENSCPOG00000036749) #34	URGCP (ENSCPOG00000025608) #35	UBE2D4 (ENSCPOG00000038086) #36	DBNL (ENSCPOG00000006660) #37
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00940000160014	ENSGT00940000162266	ENSGT00940000157317	ENSGT00390000006208.a.c	ENSGT00940000165238 #10	ENSGT00940000154823 #11	ENSGT00940000156014 #13	ENSGT00940000159212.a #14	ENSGT00510000047059.l #15	ENSGT00390000008135 #16	ENSGT00940000153883.b #17	ENSGT00940000154540.a #18	ENSGT00940000161327 #19	ENSGT00390000006030.d.a.b #20	ENSGT00390000014189.g.a	ENSGT00950000183122.B #22	ENSGT00390000001752 #23	ENSGT00940000157044.f #24	ENSGT00530000064242.b #25	ENSGT00440000038159 #26	ENSGT00940000158139 #27	ENSGT00390000008983.b	ENSGT00940000154631 #29	ENSGT00390000003115 #30	ENSGT00950000183018.a.d #31	ENSGT00530000064130	ENSGT00950000182890.A.a.b.b.b	ENSGT00940000161752 #33	ENSGT00390000011179 #34	ENSGT00940000154390.A.j #35	ENSGT00940000160915 #36
Degu	MODERN SPECIES	76	ENSODEG00000020215 #10	ENSODEG00000020176	ENSODEG00000014150	ENSODEG00000014737 #11	AUTS2 (ENSODEG00000016622) #11	ENSODEG00000020191	GALNT17 (ENSODEG00000016292) #13	CALN1 (ENSODEG00000015050) #14	ENSODEG00000014729 #15	ENSODEG00000015687 #16	ENSODEG00000016093	RABGEF1 (ENSODEG00000015206) #18	KCTD7 (ENSODEG00000014785) #19	TPST1 (ENSODEG00000015532) #20	ENSODEG00000014255	ASL (ENSODEG00000014371) #22	GUSB (ENSODEG00000014869) #23	ENSODEG00000014101 ##24	ENSODEG00000020198	ENSODEG00000014564 #26	PHKG1 (ENSODEG00000014159) #27	ENSODEG00000014693	PSPH (ENSODEG00000014742) #30	NIPSNAP2 (ENSODEG00000014015) #31	ENSODEG00000015145	SEPTIN14 (ENSODEG00000014211) #33	ENSODEG00000020219	MRPS24 (ENSODEG00000016539) #34	URGCP (ENSODEG00000015352) #35	DBNL (ENSODEG00000014896) #37	PGAM2 (ENSODEG00000014343)
Long-tailed chinchilla	MODERN SPECIES	163	ENSCLAG00000009126	RCC1L (ENSCLAG00000006691)	CASTOR2 (ENSCLAG00000006146)	ENSCLAG00000017618 #10	ENSCLAG00000007862 #11	ENSCLAG00000008234 #11	GALNT17 (ENSCLAG00000006308) #13	CALN1 (ENSCLAG00000017310) #14	ENSCLAG00000006321 #15	ENSCLAG00000005721 #16	TMEM248 (ENSCLAG00000005032) #17	RABGEF1 (ENSCLAG00000004534) #18	KCTD7 (ENSCLAG00000007230) #19	TPST1 (ENSCLAG00000006101) #20	CRCP (ENSCLAG00000007249)	ASL (ENSCLAG00000005690) #22	GUSB (ENSCLAG00000006162) #23	VKORC1L1 (ENSCLAG00000005833) #24	NUPR2 (ENSCLAG00000005756) #25	CHCHD2 (ENSCLAG00000005594) #26	PHKG1 (ENSCLAG00000005270) #27	ENSCLAG00000005667	CCT6A (ENSCLAG00000004434) #29	PSPH (ENSCLAG00000008790) #30	NIPSNAP2 (ENSCLAG00000008451) #31	MRPS17 (ENSCLAG00000007650)	ZNF713 (ENSCLAG00000007534)	SEPTIN14 (ENSCLAG00000005493) #33	ENSCLAG00000004813	MRPS24 (ENSCLAG00000004732) #34	URGCP (ENSCLAG00000006286) #35
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000041566	ENSHGLG00000007764 #11	ENSHGLG00000045084	ENSHGLG00000048626	ENSHGLG00000019442 #13	ENSHGLG00000049055	ENSHGLG00000014061 #14	ENSHGLG00000012093 #15	SBDS (ENSHGLG00000009671) #16	TMEM248 (ENSHGLG00000015603) #17	RABGEF1 (ENSHGLG00000013753) #18	KCTD7 (ENSHGLG00000042509) #19	TPST1 (ENSHGLG00000015982) #20	ENSHGLG00000017889	ENSHGLG00000011719	ENSHGLG00000018507 #22	ENSHGLG00000018821 #23	ENSHGLG00000035243 ##24	ENSHGLG00000035252	ENSHGLG00000015755 #26	ENSHGLG00000011518	PHKG1 (ENSHGLG00000018933) #27	ENSHGLG00000009645 #29	PSPH (ENSHGLG00000010095) #30	NIPSNAP2 (ENSHGLG00000005574) #31	ENSHGLG00000009551	ENSHGLG00000016304	ENSHGLG00000048189	ENSHGLG00000033643	ENSHGLG00000041022 #33	ENSHGLG00000036018