Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Glires ANCESTRAL SPECIES 10 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Rodentia ANCESTRAL SPECIES 10 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Rodentia_A ANCESTRAL SPECIES 9 ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Sciuridae ANCESTRAL SPECIES 35 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000163888.n ENSGT00390000003732 ENSGT00940000163848 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Marmotini ANCESTRAL SPECIES 78 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00940000163888.m ENSGT00940000163888.n ENSGT00390000002792.cb ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Marmotini_b ANCESTRAL SPECIES 121 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000163888.n ENSGT00390000002792.cb ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT00390000015930.e.b ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00390000016617.j ENSGT00940000163592 ENSGT00940000161697 Arctic ground squirrel MODERN SPECIES 623 ENSUPAG00010011017 #17 ENSUPAG00010011011 #18 ENSUPAG00010011003 #19 SH3BGRL (ENSUPAG00010010996) #20 ENSUPAG00010010988 #21 BRWD3 (ENSUPAG00010010937) #22 Squirrel MODERN SPECIES 147 DACH2 (ENSSTOG00000006685) CHM (ENSSTOG00000022111) POF1B (ENSSTOG00000011717) ZNF711 (ENSSTOG00000008918) ENSSTOG00000029673 APOOL (ENSSTOG00000005067) ENSSTOG00000023046 ENSSTOG00000027226 ENSSTOG00000033550 HDX (ENSSTOG00000015440) RPS6KA6 (ENSSTOG00000002290) POU3F4 (ENSSTOG00000026467) ENSSTOG00000026305 #19 SH3BGRL (ENSSTOG00000013216) #20 ENSSTOG00000030741 #21 BRWD3 (ENSSTOG00000004508) #22 ENSSTOG00000032417 TENT5D (ENSSTOG00000000603) ENSSTOG00000031325 TBX22 (ENSSTOG00000003725) ENSSTOG00000034456 ITM2A (ENSSTOG00000010140) GPR174 (ENSSTOG00000010269) P2RY10 (ENSSTOG00000000139) LPAR4 (ENSSTOG00000014696) RTL3 (ENSSTOG00000027152) ENSSTOG00000029872 ENSSTOG00000021890 ENSSTOG00000003354 TAF9B (ENSSTOG00000001982) PGK1 (ENSSTOG00000001972) Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005024204 APOOL (ENSSVLG00005024251) ENSSVLG00005024287 ENSSVLG00005024295 ENSSVLG00005024315 HDX (ENSSVLG00005024346) RPS6KA6 (ENSSVLG00005024442) CYLC1 (ENSSVLG00005024602) POU3F4 (ENSSVLG00005024640) ENSSVLG00005024677 ENSSVLG00005010323 #17 ENSSVLG00005010356 #18 ENSSVLG00005010369 #19 SH3BGRL (ENSSVLG00005010419) #20 ENSSVLG00005010444 BRWD3 (ENSSVLG00005010574) #22 ENSSVLG00005010912 TENT5D (ENSSVLG00005010945) ENSSVLG00005010961 ENSSVLG00005010993 TBX22 (ENSSVLG00005011035) ITM2A (ENSSVLG00005011136) GPR174 (ENSSVLG00005011269) ENSSVLG00005011291 P2RY10 (ENSSVLG00005011313) ENSSVLG00005011328 LPAR4 (ENSSVLG00005011359) RTL3 (ENSSVLG00005011379) ENSSVLG00005011426 ENSSVLG00005011444 CYSLTR1 (ENSSVLG00005011474) Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000162668 ENSGT00940000163888 ENSGT00940000159818 ENSGT00390000001134.b ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00530000063666.a ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000156017 #20 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00940000162668 ENSGT00940000163888 ENSGT00940000159818 ENSGT00390000001134.b ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00530000063666.a ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000156017 #20 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00940000163182 Hystricomorpha_b ANCESTRAL SPECIES 113 ENSGT00940000162668 ENSGT00940000163888 ENSGT00940000159818 ENSGT00390000001134.b ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00530000063666.a ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000156017 #20 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000161206 Long-tailed chinchilla MODERN SPECIES 236 POF1B (ENSCLAG00000001445) ZNF711 (ENSCLAG00000006726) ENSCLAG00000005441 APOOL (ENSCLAG00000005248) HDX (ENSCLAG00000004931) ENSCLAG00000004827 RPS6KA6 (ENSCLAG00000008786) ENSCLAG00000007791 POU3F4 (ENSCLAG00000017671) ENSCLAG00000007431 ENSCLAG00000007047 ENSCLAG00000006755 #18 SH3BGRL (ENSCLAG00000006693) #20 ENSCLAG00000002689 BRWD3 (ENSCLAG00000002311) #22 ENSCLAG00000002120 TBX22 (ENSCLAG00000001961) ENSCLAG00000001888 Degu MODERN SPECIES 144 ENSODEG00000018560 CHM (ENSODEG00000001208) ENSODEG00000001180 POF1B (ENSODEG00000001140) ZNF711 (ENSODEG00000001046) ENSODEG00000001004 ENSODEG00000000990 APOOL (ENSODEG00000000970) ENSODEG00000000866 HDX (ENSODEG00000000832) RPS6KA6 (ENSODEG00000003590) POU3F4 (ENSODEG00000019055) ENSODEG00000003430 ENSODEG00000003422 SH3BGRL (ENSODEG00000003326) #20 BRWD3 (ENSODEG00000003272) #22 ENSODEG00000003179 ENSODEG00000001423 TBX22 (ENSODEG00000001209) ENSODEG00000001116 Guinea pig MODERN SPECIES 26 ENSCPOG00000022352 ENSCPOG00000019816 ENSCPOG00000038470 ENSCPOG00000034813 PABPC5 (ENSCPOG00000002555) ENSCPOG00000006969 ENSCPOG00000038839 KLHL4 (ENSCPOG00000008909) CHM (ENSCPOG00000039732) POF1B (ENSCPOG00000009472) ZNF711 (ENSCPOG00000009467) APOOL (ENSCPOG00000036938) HDX (ENSCPOG00000014501) POU3F4 (ENSCPOG00000003372) SH3BGRL (ENSCPOG00000012267) #20 BRWD3 (ENSCPOG00000009894) #22 ENSCPOG00000026660 GPR174 (ENSCPOG00000013180) P2RY10 (ENSCPOG00000010882) CYSLTR1 (ENSCPOG00000002100) TAF9B (ENSCPOG00000002098) PGK1 (ENSCPOG00000038840) ATP7A (ENSCPOG00000020377) ENSCPOG00000036844 MAGT1 (ENSCPOG00000027554) ATRX (ENSCPOG00000007873) FGF16 (ENSCPOG00000007870) MAGEE1 (ENSCPOG00000039465) PBDC1 (ENSCPOG00000006794) ZDHHC15 (ENSCPOG00000006742) UPRT (ENSCPOG00000035232) Naked mole-rat female MODERN SPECIES 31 APOOL (ENSHGLG00000003635) ENSHGLG00000035970 ENSHGLG00000045926 HDX (ENSHGLG00000003945) RPS6KA6 (ENSHGLG00000004511) ENSHGLG00000037398 ENSHGLG00000040597 ENSHGLG00000050316 ENSHGLG00000050061 ENSHGLG00000005940 ENSHGLG00000020202 ENSHGLG00000020488 ENSHGLG00000007062 ENSHGLG00000007722 #20 ENSHGLG00000037295 BRWD3 (ENSHGLG00000002063) #22 ENSHGLG00000041421 TENT5D (ENSHGLG00000020434) ENSHGLG00000000868 TBX22 (ENSHGLG00000001099) ENSHGLG00000001147 ITM2A (ENSHGLG00000001163) ENSHGLG00000001279 P2RY10 (ENSHGLG00000001264) ENSHGLG00000001881 ENSHGLG00000034411 ENSHGLG00000000659 NOX1 (ENSHGLG00000001560) XKRX (ENSHGLG00000001130) ENSHGLG00000032087 ENSHGLG00000044261 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Kangaroo rat MODERN SPECIES 399 ENSDORG00000028193 Klhl4 (ENSDORG00000013698) Dach2 (ENSDORG00000005499) ENSDORG00000029836 Chm (ENSDORG00000011463) ENSDORG00000026546 Pof1b (ENSDORG00000012012) Zfp711 (ENSDORG00000012010) Apool (ENSDORG00000011045) 4933403O08Rik (ENSDORG00000027967) ENSDORG00000029968 Hdx (ENSDORG00000012098) Rps6ka6 (ENSDORG00000008579) Pou3f4 (ENSDORG00000006273) Sh3bgrl (ENSDORG00000029190) #20 Brwd3 (ENSDORG00000003314) #22 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Lesser Egyptian jerboa MODERN SPECIES 173 Dach2 (ENSJJAG00000014515) Chm (ENSJJAG00000012459) Pof1b (ENSJJAG00000010917) Zfp711 (ENSJJAG00000010450) ENSJJAG00000009900 Apool (ENSJJAG00000007396) 4933403O08Rik (ENSJJAG00000005323) Hdx (ENSJJAG00000004610) Rps6ka6 (ENSJJAG00000023727) ENSJJAG00000022602 ENSJJAG00000022439 ENSJJAG00000022322 Pou3f4 (ENSJJAG00000012452) ENSJJAG00000022040 ENSJJAG00000021895 #20 Brwd3 (ENSJJAG00000022949) #22 Muroidea ANCESTRAL SPECIES 50 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Upper Galilee mountains blind mole rat MODERN SPECIES 503 Chm (ENSNGAG00000011917) Pof1b (ENSNGAG00000024266) Zfp711 (ENSNGAG00000015585) Apool (ENSNGAG00000023555) 4933403O08Rik (ENSNGAG00000001929) ENSNGAG00000007069 ENSNGAG00000020473 Hdx (ENSNGAG00000022021) Rps6ka6 (ENSNGAG00000013321) Pou3f4 (ENSNGAG00000013024) ENSNGAG00000018747 ENSNGAG00000023856 Sh3bgrl (ENSNGAG00000008553) #20 ENSNGAG00000018332 ENSNGAG00000021355 Brwd3 (ENSNGAG00000021381) #22 ENSNGAG00000024238 Chmp1b2 (ENSNGAG00000023090) Tbx22 (ENSNGAG00000023862) ENSNGAG00000014283 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00530000063666.a ENSGT00530000067269 ENSGT00940000163888 ENSGT00390000003732 ENSGT00940000163848 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Cricetidae ANCESTRAL SPECIES 8 ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Cricetinae ANCESTRAL SPECIES 17 ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00940000163888 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT01030000235438 ENSGT00940000161429 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Chinese hamster chok1gshd MODERN SPECIES 16 ENSCGRG00001000138 ENSCGRG00001000206 4933403O08Rik (ENSCGRG00001018687) ENSCGRG00001007339 Tex16 (ENSCGRG00001020189) Hdx (ENSCGRG00001001736) Rps6ka6 (ENSCGRG00001019587) Cylc1 (ENSCGRG00001014177) ENSCGRG00001016928 Pou3f4 (ENSCGRG00001011962) ENSCGRG00001024450 Gm6377 (ENSCGRG00001012169) #18 ENSCGRG00001011016 Sh3bgrl (ENSCGRG00001000603) #20 Hmgn5 (ENSCGRG00001013973) #21 Brwd3 (ENSCGRG00001016099) #22 ENSCGRG00001004740 Wmp (ENSCGRG00001017986) Tent5d (ENSCGRG00001012351) Chmp1b2 (ENSCGRG00001005877) Tbx22 (ENSCGRG00001019725) ENSCGRG00001000247 Itm2a (ENSCGRG00001008417) Gpr174 (ENSCGRG00001015402) P2ry10b (ENSCGRG00001011228) P2ry10 (ENSCGRG00001007928) Lpar4 (ENSCGRG00001006727) Rtl3 (ENSCGRG00001015952) Gm5127 (ENSCGRG00001007445) Cysltr1 (ENSCGRG00001010323) ENSCGRG00001002344 Golden Hamster MODERN SPECIES 758 Zfp711 (ENSMAUG00000012277) 2010106E10Rik (ENSMAUG00000012995) Satl1 (ENSMAUG00000016111) Apool (ENSMAUG00000014048) 4933403O08Rik (ENSMAUG00000009376) ENSMAUG00000016626 Tex16 (ENSMAUG00000006556) ENSMAUG00000018096 Hdx (ENSMAUG00000000922) Rps6ka6 (ENSMAUG00000001357) ENSMAUG00000007023 Pou3f4 (ENSMAUG00000016709) ENSMAUG00000010933 ENSMAUG00000008750 Sh3bgrl (ENSMAUG00000000433) #20 Brwd3 (ENSMAUG00000012244) #22 ENSMAUG00000011241 ENSMAUG00000013651 Wmp (ENSMAUG00000016661) Chmp1b2 (ENSMAUG00000011550) Cricetidae_B ANCESTRAL SPECIES 47 ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT01000000216433 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.t.a Northern American deer mouse MODERN SPECIES 475 Pof1b (ENSPEMG00000023660) Zfp711 (ENSPEMG00000028793) 2010106E10Rik (ENSPEMG00000015852) ENSPEMG00000026639 Apool (ENSPEMG00000024018) ENSPEMG00000022787 4933403O08Rik (ENSPEMG00000025473) Hdx (ENSPEMG00000011250) Rps6ka6 (ENSPEMG00000015736) Cylc1 (ENSPEMG00000017301) Pou3f4 (ENSPEMG00000003663) ENSPEMG00000025843 Gm6377 (ENSPEMG00000023246) #18 ENSPEMG00000024318 #19 Sh3bgrl (ENSPEMG00000027781) #20 Brwd3 (ENSPEMG00000022305) #22 ENSPEMG00000031328 Wmp (ENSPEMG00000027638) Tent5d (ENSPEMG00000031184) Chmp1b2 (ENSPEMG00000022335) Tbx22 (ENSPEMG00000023383) Itm2a (ENSPEMG00000023946) Gpr174 (ENSPEMG00000005742) ENSPEMG00000004229 P2ry10b (ENSPEMG00000024642) P2ry10 (ENSPEMG00000023462) Lpar4 (ENSPEMG00000030102) Cysltr1 (ENSPEMG00000023120) ENSPEMG00000026887 ENSPEMG00000021468 Taf9b (ENSPEMG00000022582) Prairie vole MODERN SPECIES 96 Pof1b (ENSMOCG00000014928) Zfp711 (ENSMOCG00000003046) 2010106E10Rik (ENSMOCG00000017647) Satl1 (ENSMOCG00000003777) Apool (ENSMOCG00000019380) 4933403O08Rik (ENSMOCG00000010080) Tex16 (ENSMOCG00000016239) ENSMOCG00000012225 Hdx (ENSMOCG00000016956) Rps6ka6 (ENSMOCG00000000070) Cylc1 (ENSMOCG00000002144) Pou3f4 (ENSMOCG00000001063) ENSMOCG00000001887 Sh3bgrl (ENSMOCG00000002612) #20 ENSMOCG00000001614 #21 Brwd3 (ENSMOCG00000018113) #22 ENSMOCG00000004335 Chmp1b2 (ENSMOCG00000010933) Tbx22 (ENSMOCG00000001712) Itm2a (ENSMOCG00000020928) Gpr174 (ENSMOCG00000022431) Murinae ANCESTRAL SPECIES 14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00940000163888 ENSGT00390000003732 ENSGT00940000163848 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Rat MODERN SPECIES 46 Satl1 (ENSRNOG00000022476) Apool (ENSRNOG00000004512) 4933403O08Rik (ENSRNOG00000042394) Ube2d4l1 (ENSRNOG00000065297) LOC100363993 (ENSRNOG00000067650) Hdx (ENSRNOG00000037799) Rps6ka6 (ENSRNOG00000002592) Cylc1 (ENSRNOG00000056740) Ankra2 (ENSRNOG00000016622) Pou3f4 (ENSRNOG00000002784) LOC102554937 (ENSRNOG00000068802) LOC681325 (ENSRNOG00000023005) #18 RGD1562039 (ENSRNOG00000030519) #19 Sh3bgrl (ENSRNOG00000069303) #20 Hmgn5 (ENSRNOG00000029078) #21 Brwd3 (ENSRNOG00000002291) #22 LOC103690878 (ENSRNOG00000031283) RGD1562871 (ENSRNOG00000033458) Rfk-ps1 (ENSRNOG00000066048) RGD1561552 (ENSRNOG00000037827) Tent5d (ENSRNOG00000023637) Chmp1b2 (ENSRNOG00000002323) Tbx22 (ENSRNOG00000002346) Itm2a (ENSRNOG00000002365) Gpr174 (ENSRNOG00000032970) P2ry10b (ENSRNOG00000037838) P2ry10 (ENSRNOG00000037839) Lpar4 (ENSRNOG00000002428) Rtl3 (ENSRNOG00000002429) RGD1560821 (ENSRNOG00000023733) LOC100359656 (ENSRNOG00000029090) Mus ANCESTRAL SPECIES 9 ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592.c ENSGT00940000161697 Shrew mouse MODERN SPECIES 23 Satl1 (MGP_PahariEiJ_G0031895) Apool (MGP_PahariEiJ_G0031894) 4933403O08Rik (MGP_PahariEiJ_G0031893) MGP_PahariEiJ_G0031892 Hdx (MGP_PahariEiJ_G0031891) Rps6ka6 (MGP_PahariEiJ_G0031890) MGP_PahariEiJ_G0031889 Pou3f4 (MGP_PahariEiJ_G0031888) MGP_PahariEiJ_G0031887 MGP_PahariEiJ_G0031885 MGP_PahariEiJ_G0031886 MGP_PahariEiJ_G0031884 Gm6377 (MGP_PahariEiJ_G0031883) #18 Sh3bgrl (MGP_PahariEiJ_G0031882) #20 Hmgn5 (MGP_PahariEiJ_G0031881) #21 Brwd3 (MGP_PahariEiJ_G0031880) #22 MGP_PahariEiJ_G0031879 Wmp (MGP_PahariEiJ_G0031878) Tent5d (MGP_PahariEiJ_G0031877) Chmp1b2 (MGP_PahariEiJ_G0031876) Tbx22 (MGP_PahariEiJ_G0031875) Itm2a (MGP_PahariEiJ_G0031874) Gpr174 (MGP_PahariEiJ_G0031873) P2ry10b (MGP_PahariEiJ_G0031872) P2ry10 (MGP_PahariEiJ_G0031871) Lpar4 (MGP_PahariEiJ_G0031870) Rtl3 (MGP_PahariEiJ_G0031869) Gm5127 (MGP_PahariEiJ_G0031868) Cysltr1 (MGP_PahariEiJ_G0031867) Fndc3c1 (MGP_PahariEiJ_G0031866) Taf9b (MGP_PahariEiJ_G0031865) Mus_A ANCESTRAL SPECIES 15 ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592.c ENSGT00940000161697 Ryukyu mouse MODERN SPECIES 19 Chm (MGP_CAROLIEiJ_G0033359) Pof1b (MGP_CAROLIEiJ_G0033358) Zfp711 (MGP_CAROLIEiJ_G0033357) 2010106E10Rik (MGP_CAROLIEiJ_G0033356) Satl1 (MGP_CAROLIEiJ_G0033355) Apool (MGP_CAROLIEiJ_G0033354) 4933403O08Rik (MGP_CAROLIEiJ_G0033353) MGP_CAROLIEiJ_G0033352 Hdx (MGP_CAROLIEiJ_G0033351) Rps6ka6 (MGP_CAROLIEiJ_G0033350) Cylc1 (MGP_CAROLIEiJ_G0033349) Pou3f4 (MGP_CAROLIEiJ_G0033348) Gm6377 (MGP_CAROLIEiJ_G0033347) #18 Sh3bgrl (MGP_CAROLIEiJ_G0033346) #20 MGP_CAROLIEiJ_G0033345 #21 Brwd3 (MGP_CAROLIEiJ_G0033344) #22 MGP_CAROLIEiJ_G0033343 Wmp (MGP_CAROLIEiJ_G0033342) Tent5d (MGP_CAROLIEiJ_G0033341) Chmp1b2 (MGP_CAROLIEiJ_G0033340) Tbx22 (MGP_CAROLIEiJ_G0033339) Itm2a (MGP_CAROLIEiJ_G0033338) Gpr174 (MGP_CAROLIEiJ_G0033337) P2ry10b (MGP_CAROLIEiJ_G0033336) P2ry10 (MGP_CAROLIEiJ_G0033335) Lpar4 (MGP_CAROLIEiJ_G0033334) Rtl3 (MGP_CAROLIEiJ_G0033333) Gm5127 (MGP_CAROLIEiJ_G0033332) Cysltr1 (MGP_CAROLIEiJ_G0033331) Fndc3c1 (MGP_CAROLIEiJ_G0033330) Taf9b (MGP_CAROLIEiJ_G0033329) Mus_B ANCESTRAL SPECIES 14 ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592.c ENSGT00940000161697 Mus_C ANCESTRAL SPECIES 22 ENSGT00390000001134.b ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b Steppe mouse MODERN SPECIES 2495 ENSMSIG00000029372 #22 ENSMSIG00000029355 spretus MODERN SPECIES 19 Pof1b (MGP_SPRETEiJ_G0034524) Zfp711 (MGP_SPRETEiJ_G0034523) 2010106E10Rik (MGP_SPRETEiJ_G0034522) Satl1 (MGP_SPRETEiJ_G0034521) Apool (MGP_SPRETEiJ_G0034520) 4933403O08Rik (MGP_SPRETEiJ_G0034519) Hdx (MGP_SPRETEiJ_G0034517) MGP_SPRETEiJ_G0034516 Rps6ka6 (MGP_SPRETEiJ_G0034515) MGP_SPRETEiJ_G0034514 Cylc1 (MGP_SPRETEiJ_G0034513) Pou3f4 (MGP_SPRETEiJ_G0034512) Gm6377 (MGP_SPRETEiJ_G0034511) #18 Sh3bgrl (MGP_SPRETEiJ_G0034510) #20 MGP_SPRETEiJ_G0034509 #21 MGP_SPRETEiJ_G0034508 #22 MGP_SPRETEiJ_G0034507 MGP_SPRETEiJ_G0034506 Tent5d (MGP_SPRETEiJ_G0034505) Chmp1b2 (MGP_SPRETEiJ_G0034504) Tbx22 (MGP_SPRETEiJ_G0034503) Itm2a (MGP_SPRETEiJ_G0034502) Gpr174 (MGP_SPRETEiJ_G0034501) P2ry10b (MGP_SPRETEiJ_G0034500) P2ry10 (MGP_SPRETEiJ_G0034499) Lpar4 (MGP_SPRETEiJ_G0034498) Rtl3 (MGP_SPRETEiJ_G0034497) Gm5127 (MGP_SPRETEiJ_G0034496) Cysltr1 (MGP_SPRETEiJ_G0034495) Taf9b (MGP_SPRETEiJ_G0034493) Pgk1 (MGP_SPRETEiJ_G0034492) Mouse MODERN SPECIES 37 Pof1b (ENSMUSG00000034607) Zfp711 (ENSMUSG00000025529) 2010106E10Rik (ENSMUSG00000025528) Satl1 (ENSMUSG00000025527) Apool (ENSMUSG00000025525) 4933403O08Rik (ENSMUSG00000079460) Tex16 (ENSMUSG00000034555) Gm45194 (ENSMUSG00000109156) Hdx (ENSMUSG00000034551) Rps6ka6 (ENSMUSG00000025665) Cylc1 (ENSMUSG00000073001) Pou3f4 (ENSMUSG00000056854) Gm6377 (ENSMUSG00000048621) #18 Sh3bgrl (ENSMUSG00000031246) #20 Hmgn5 (ENSMUSG00000031245) #21 Brwd3 (ENSMUSG00000063663) #22 Wmp (ENSMUSG00000073006) Tent5d (ENSMUSG00000073007) Chmp1b2 (ENSMUSG00000031242) Tbx22 (ENSMUSG00000031241) Itm2a (ENSMUSG00000031239) Gpr174 (ENSMUSG00000073008) P2ry10b (ENSMUSG00000054293) P2ry10 (ENSMUSG00000050921) Lpar4 (ENSMUSG00000049929) Rtl3 (ENSMUSG00000047686) Gm5127 (ENSMUSG00000073010) Cysltr1 (ENSMUSG00000052821) Fndc3c1 (ENSMUSG00000033737) Fnd3c2 (ENSMUSG00000073012) Taf9b (ENSMUSG00000047242) Lagomorpha ANCESTRAL SPECIES 95 ENSGT00950000183121.b.b.b.a ENSGT00520000059318 ENSGT00530000063666.a ENSGT00940000163888 ENSGT00530000067269 ENSGT00390000008591 ENSGT00940000159242 ENSGT00730000111075.b ENSGT00940000161429 ENSGT00390000017581.a ENSGT00940000164351 #17 ENSGT00390000011425.A #18 ENSGT00940000165353 #19 ENSGT00940000156017 #20 ENSGT00730000111570 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Rabbit MODERN SPECIES 1401 ENSOCUG00000031808 ENSOCUG00000027774 HDX (ENSOCUG00000000903) ENSOCUG00000006428 CYLC1 (ENSOCUG00000005157) POU3F4 (ENSOCUG00000010927) ENSOCUG00000021892 ENSOCUG00000005222 ENSOCUG00000029757 ENSOCUG00000027690 #17 ENSOCUG00000025499 #18 ENSOCUG00000028103 #19 SH3BGRL (ENSOCUG00000014035) #20 HMGN5 (ENSOCUG00000029345) #21 ENSOCUG00000038725 BRWD3 (ENSOCUG00000005170) #22 ENSOCUG00000026656 ENSOCUG00000031557 ENSOCUG00000022541 ENSOCUG00000021400 TENT5D (ENSOCUG00000001367) ENSOCUG00000024762 TBX22 (ENSOCUG00000013685) ENSOCUG00000033641 ITM2A (ENSOCUG00000008651) GPR174 (ENSOCUG00000005049) ENSOCUG00000024395 P2RY10 (ENSOCUG00000014507) RTL3 (ENSOCUG00000025689) ENSOCUG00000024148 CYSLTR1 (ENSOCUG00000016192) Tree shrew MODERN SPECIES 3312 ENSTBEG00000001219 #22