Gnathostomata ANCESTRAL SPECIES 1 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00990000205517 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT01050000244937.a.b.a ENSGT00940000159971 ENSGT00940000160039 ENSGT00940000157557 Euteleostomi ANCESTRAL SPECIES 58 ENSGT00390000001134.b #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 Sarcopterygii ANCESTRAL SPECIES 112 ENSGT00390000001134.b #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 Tetrapoda ANCESTRAL SPECIES 20 ENSGT00390000001134.b #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT01050000244937.a.b.a ENSGT00940000159971 ENSGT00940000160039 Amniota ANCESTRAL SPECIES 24 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT01050000244937.a.b.a ENSGT00940000159971 ENSGT00940000160039 Mammalia ANCESTRAL SPECIES 44 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT01050000244937.a.b.a ENSGT00940000159971 ENSGT00940000160039 ENSGT00950000183097.a.a.a Theria ANCESTRAL SPECIES 33 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00950000183593 ENSGT00940000159568 ENSGT00390000012178 Eutheria ANCESTRAL SPECIES 16 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Boreoeutheria ANCESTRAL SPECIES 11 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Euarchontoglires ANCESTRAL SPECIES 11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Glires ANCESTRAL SPECIES 10 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Rodentia ANCESTRAL SPECIES 10 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Kangaroo rat MODERN SPECIES 399 ENSDORG00000028193 #7 Klhl4 (ENSDORG00000013698) #8 Dach2 (ENSDORG00000005499) #9 ENSDORG00000029836 #10 Chm (ENSDORG00000011463) #11 ENSDORG00000026546 #12 Pof1b (ENSDORG00000012012) #13 Zfp711 (ENSDORG00000012010) #14 Apool (ENSDORG00000011045) #15 4933403O08Rik (ENSDORG00000027967) #16 ENSDORG00000029968 #17 Hdx (ENSDORG00000012098) #18 Rps6ka6 (ENSDORG00000008579) #19 Pou3f4 (ENSDORG00000006273) #20 Sh3bgrl (ENSDORG00000029190) #21 Brwd3 (ENSDORG00000003314) #22 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Lesser Egyptian jerboa MODERN SPECIES 173 Dach2 (ENSJJAG00000014515) #9 Chm (ENSJJAG00000012459) #11 Pof1b (ENSJJAG00000010917) #13 Zfp711 (ENSJJAG00000010450) #14 ENSJJAG00000009900 Apool (ENSJJAG00000007396) #15 4933403O08Rik (ENSJJAG00000005323) #16 Hdx (ENSJJAG00000004610) #18 Rps6ka6 (ENSJJAG00000023727) #19 ENSJJAG00000022602 ENSJJAG00000022439 ENSJJAG00000022322 Pou3f4 (ENSJJAG00000012452) #20 ENSJJAG00000022040 ENSJJAG00000021895 #21 Brwd3 (ENSJJAG00000022949) #22 Muroidea ANCESTRAL SPECIES 50 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Upper Galilee mountains blind mole rat MODERN SPECIES 503 Chm (ENSNGAG00000011917) #11 Pof1b (ENSNGAG00000024266) #13 Zfp711 (ENSNGAG00000015585) #14 Apool (ENSNGAG00000023555) #15 4933403O08Rik (ENSNGAG00000001929) #16 ENSNGAG00000007069 ENSNGAG00000020473 #17 Hdx (ENSNGAG00000022021) #18 Rps6ka6 (ENSNGAG00000013321) #19 Pou3f4 (ENSNGAG00000013024) #20 ENSNGAG00000018747 ENSNGAG00000023856 Sh3bgrl (ENSNGAG00000008553) #21 ENSNGAG00000018332 ENSNGAG00000021355 Brwd3 (ENSNGAG00000021381) #22 ENSNGAG00000024238 Chmp1b2 (ENSNGAG00000023090) Tbx22 (ENSNGAG00000023862) ENSNGAG00000014283 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT00390000003732 ENSGT00940000163848 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Cricetidae ANCESTRAL SPECIES 8 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Cricetinae ANCESTRAL SPECIES 17 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT01030000235438 ENSGT00940000161429 #20 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Chinese hamster chok1gshd MODERN SPECIES 16 ENSCGRG00001000138 ENSCGRG00001000206 #15 4933403O08Rik (ENSCGRG00001018687) #16 ENSCGRG00001007339 Tex16 (ENSCGRG00001020189) Hdx (ENSCGRG00001001736) #18 Rps6ka6 (ENSCGRG00001019587) #19 Cylc1 (ENSCGRG00001014177) ENSCGRG00001016928 Pou3f4 (ENSCGRG00001011962) #20 ENSCGRG00001024450 Gm6377 (ENSCGRG00001012169) ENSCGRG00001011016 Sh3bgrl (ENSCGRG00001000603) #21 Hmgn5 (ENSCGRG00001013973) Brwd3 (ENSCGRG00001016099) #22 ENSCGRG00001004740 Wmp (ENSCGRG00001017986) Tent5d (ENSCGRG00001012351) Chmp1b2 (ENSCGRG00001005877) Tbx22 (ENSCGRG00001019725) ENSCGRG00001000247 Itm2a (ENSCGRG00001008417) Gpr174 (ENSCGRG00001015402) P2ry10b (ENSCGRG00001011228) P2ry10 (ENSCGRG00001007928) Lpar4 (ENSCGRG00001006727) Rtl3 (ENSCGRG00001015952) Gm5127 (ENSCGRG00001007445) Cysltr1 (ENSCGRG00001010323) ENSCGRG00001002344 Golden Hamster MODERN SPECIES 758 Zfp711 (ENSMAUG00000012277) #14 2010106E10Rik (ENSMAUG00000012995) Satl1 (ENSMAUG00000016111) Apool (ENSMAUG00000014048) #15 4933403O08Rik (ENSMAUG00000009376) #16 ENSMAUG00000016626 Tex16 (ENSMAUG00000006556) ENSMAUG00000018096 #17 Hdx (ENSMAUG00000000922) #18 Rps6ka6 (ENSMAUG00000001357) #19 ENSMAUG00000007023 Pou3f4 (ENSMAUG00000016709) #20 ENSMAUG00000010933 ENSMAUG00000008750 Sh3bgrl (ENSMAUG00000000433) #21 Brwd3 (ENSMAUG00000012244) #22 ENSMAUG00000011241 ENSMAUG00000013651 Wmp (ENSMAUG00000016661) Chmp1b2 (ENSMAUG00000011550) Cricetidae_B ANCESTRAL SPECIES 47 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.t.a Northern American deer mouse MODERN SPECIES 475 Pof1b (ENSPEMG00000023660) #13 Zfp711 (ENSPEMG00000028793) #14 2010106E10Rik (ENSPEMG00000015852) ENSPEMG00000026639 Apool (ENSPEMG00000024018) #15 ENSPEMG00000022787 4933403O08Rik (ENSPEMG00000025473) #16 Hdx (ENSPEMG00000011250) #18 Rps6ka6 (ENSPEMG00000015736) #19 Cylc1 (ENSPEMG00000017301) Pou3f4 (ENSPEMG00000003663) #20 ENSPEMG00000025843 Gm6377 (ENSPEMG00000023246) ENSPEMG00000024318 Sh3bgrl (ENSPEMG00000027781) #21 Brwd3 (ENSPEMG00000022305) #22 ENSPEMG00000031328 Wmp (ENSPEMG00000027638) Tent5d (ENSPEMG00000031184) Chmp1b2 (ENSPEMG00000022335) Tbx22 (ENSPEMG00000023383) Itm2a (ENSPEMG00000023946) Gpr174 (ENSPEMG00000005742) ENSPEMG00000004229 P2ry10b (ENSPEMG00000024642) P2ry10 (ENSPEMG00000023462) Lpar4 (ENSPEMG00000030102) Cysltr1 (ENSPEMG00000023120) ENSPEMG00000026887 ENSPEMG00000021468 Taf9b (ENSPEMG00000022582) Prairie vole MODERN SPECIES 96 Pof1b (ENSMOCG00000014928) #13 Zfp711 (ENSMOCG00000003046) #14 2010106E10Rik (ENSMOCG00000017647) Satl1 (ENSMOCG00000003777) Apool (ENSMOCG00000019380) #15 4933403O08Rik (ENSMOCG00000010080) #16 Tex16 (ENSMOCG00000016239) ENSMOCG00000012225 #17 Hdx (ENSMOCG00000016956) #18 Rps6ka6 (ENSMOCG00000000070) #19 Cylc1 (ENSMOCG00000002144) Pou3f4 (ENSMOCG00000001063) #20 ENSMOCG00000001887 Sh3bgrl (ENSMOCG00000002612) #21 ENSMOCG00000001614 Brwd3 (ENSMOCG00000018113) #22 ENSMOCG00000004335 Chmp1b2 (ENSMOCG00000010933) Tbx22 (ENSMOCG00000001712) Itm2a (ENSMOCG00000020928) Gpr174 (ENSMOCG00000022431) Murinae ANCESTRAL SPECIES 14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT00390000003732 ENSGT00940000163848 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 Rat MODERN SPECIES 46 Satl1 (ENSRNOG00000022476) Apool (ENSRNOG00000004512) #15 4933403O08Rik (ENSRNOG00000042394) #16 Ube2d4l1 (ENSRNOG00000065297) LOC100363993 (ENSRNOG00000067650) Hdx (ENSRNOG00000037799) #18 Rps6ka6 (ENSRNOG00000002592) #19 Cylc1 (ENSRNOG00000056740) Ankra2 (ENSRNOG00000016622) Pou3f4 (ENSRNOG00000002784) #20 LOC102554937 (ENSRNOG00000068802) LOC681325 (ENSRNOG00000023005) RGD1562039 (ENSRNOG00000030519) Sh3bgrl (ENSRNOG00000069303) #21 Hmgn5 (ENSRNOG00000029078) Brwd3 (ENSRNOG00000002291) #22 LOC103690878 (ENSRNOG00000031283) RGD1562871 (ENSRNOG00000033458) Rfk-ps1 (ENSRNOG00000066048) RGD1561552 (ENSRNOG00000037827) Tent5d (ENSRNOG00000023637) Chmp1b2 (ENSRNOG00000002323) Tbx22 (ENSRNOG00000002346) Itm2a (ENSRNOG00000002365) Gpr174 (ENSRNOG00000032970) P2ry10b (ENSRNOG00000037838) P2ry10 (ENSRNOG00000037839) Lpar4 (ENSRNOG00000002428) Rtl3 (ENSRNOG00000002429) RGD1560821 (ENSRNOG00000023733) LOC100359656 (ENSRNOG00000029090) Mus ANCESTRAL SPECIES 9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592.c ENSGT00940000161697 Shrew mouse MODERN SPECIES 23 Satl1 (MGP_PahariEiJ_G0031895) Apool (MGP_PahariEiJ_G0031894) #15 4933403O08Rik (MGP_PahariEiJ_G0031893) #16 MGP_PahariEiJ_G0031892 Hdx (MGP_PahariEiJ_G0031891) #18 Rps6ka6 (MGP_PahariEiJ_G0031890) #19 MGP_PahariEiJ_G0031889 Pou3f4 (MGP_PahariEiJ_G0031888) #20 MGP_PahariEiJ_G0031887 MGP_PahariEiJ_G0031885 MGP_PahariEiJ_G0031886 MGP_PahariEiJ_G0031884 Gm6377 (MGP_PahariEiJ_G0031883) Sh3bgrl (MGP_PahariEiJ_G0031882) #21 Hmgn5 (MGP_PahariEiJ_G0031881) Brwd3 (MGP_PahariEiJ_G0031880) #22 MGP_PahariEiJ_G0031879 Wmp (MGP_PahariEiJ_G0031878) Tent5d (MGP_PahariEiJ_G0031877) Chmp1b2 (MGP_PahariEiJ_G0031876) Tbx22 (MGP_PahariEiJ_G0031875) Itm2a (MGP_PahariEiJ_G0031874) Gpr174 (MGP_PahariEiJ_G0031873) P2ry10b (MGP_PahariEiJ_G0031872) P2ry10 (MGP_PahariEiJ_G0031871) Lpar4 (MGP_PahariEiJ_G0031870) Rtl3 (MGP_PahariEiJ_G0031869) Gm5127 (MGP_PahariEiJ_G0031868) Cysltr1 (MGP_PahariEiJ_G0031867) Fndc3c1 (MGP_PahariEiJ_G0031866) Taf9b (MGP_PahariEiJ_G0031865) Mus_A ANCESTRAL SPECIES 15 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592.c ENSGT00940000161697 Ryukyu mouse MODERN SPECIES 19 Chm (MGP_CAROLIEiJ_G0033359) #11 Pof1b (MGP_CAROLIEiJ_G0033358) #13 Zfp711 (MGP_CAROLIEiJ_G0033357) #14 2010106E10Rik (MGP_CAROLIEiJ_G0033356) Satl1 (MGP_CAROLIEiJ_G0033355) Apool (MGP_CAROLIEiJ_G0033354) #15 4933403O08Rik (MGP_CAROLIEiJ_G0033353) #16 MGP_CAROLIEiJ_G0033352 Hdx (MGP_CAROLIEiJ_G0033351) #18 Rps6ka6 (MGP_CAROLIEiJ_G0033350) #19 Cylc1 (MGP_CAROLIEiJ_G0033349) Pou3f4 (MGP_CAROLIEiJ_G0033348) #20 Gm6377 (MGP_CAROLIEiJ_G0033347) Sh3bgrl (MGP_CAROLIEiJ_G0033346) #21 MGP_CAROLIEiJ_G0033345 Brwd3 (MGP_CAROLIEiJ_G0033344) #22 MGP_CAROLIEiJ_G0033343 Wmp (MGP_CAROLIEiJ_G0033342) Tent5d (MGP_CAROLIEiJ_G0033341) Chmp1b2 (MGP_CAROLIEiJ_G0033340) Tbx22 (MGP_CAROLIEiJ_G0033339) Itm2a (MGP_CAROLIEiJ_G0033338) Gpr174 (MGP_CAROLIEiJ_G0033337) P2ry10b (MGP_CAROLIEiJ_G0033336) P2ry10 (MGP_CAROLIEiJ_G0033335) Lpar4 (MGP_CAROLIEiJ_G0033334) Rtl3 (MGP_CAROLIEiJ_G0033333) Gm5127 (MGP_CAROLIEiJ_G0033332) Cysltr1 (MGP_CAROLIEiJ_G0033331) Fndc3c1 (MGP_CAROLIEiJ_G0033330) Taf9b (MGP_CAROLIEiJ_G0033329) Mus_B ANCESTRAL SPECIES 14 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592.c ENSGT00940000161697 Mus_C ANCESTRAL SPECIES 22 ENSGT00390000001134.b #9 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000182962.b.b.a ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b Steppe mouse MODERN SPECIES 2495 ENSMSIG00000029372 #22 ENSMSIG00000029355 spretus MODERN SPECIES 19 Pof1b (MGP_SPRETEiJ_G0034524) #13 Zfp711 (MGP_SPRETEiJ_G0034523) #14 2010106E10Rik (MGP_SPRETEiJ_G0034522) Satl1 (MGP_SPRETEiJ_G0034521) Apool (MGP_SPRETEiJ_G0034520) #15 4933403O08Rik (MGP_SPRETEiJ_G0034519) #16 Hdx (MGP_SPRETEiJ_G0034517) #18 MGP_SPRETEiJ_G0034516 Rps6ka6 (MGP_SPRETEiJ_G0034515) #19 MGP_SPRETEiJ_G0034514 Cylc1 (MGP_SPRETEiJ_G0034513) Pou3f4 (MGP_SPRETEiJ_G0034512) #20 Gm6377 (MGP_SPRETEiJ_G0034511) Sh3bgrl (MGP_SPRETEiJ_G0034510) #21 MGP_SPRETEiJ_G0034509 MGP_SPRETEiJ_G0034508 #22 MGP_SPRETEiJ_G0034507 MGP_SPRETEiJ_G0034506 Tent5d (MGP_SPRETEiJ_G0034505) Chmp1b2 (MGP_SPRETEiJ_G0034504) Tbx22 (MGP_SPRETEiJ_G0034503) Itm2a (MGP_SPRETEiJ_G0034502) Gpr174 (MGP_SPRETEiJ_G0034501) P2ry10b (MGP_SPRETEiJ_G0034500) P2ry10 (MGP_SPRETEiJ_G0034499) Lpar4 (MGP_SPRETEiJ_G0034498) Rtl3 (MGP_SPRETEiJ_G0034497) Gm5127 (MGP_SPRETEiJ_G0034496) Cysltr1 (MGP_SPRETEiJ_G0034495) Taf9b (MGP_SPRETEiJ_G0034493) Pgk1 (MGP_SPRETEiJ_G0034492) Mouse MODERN SPECIES 37 Pof1b (ENSMUSG00000034607) #13 Zfp711 (ENSMUSG00000025529) #14 2010106E10Rik (ENSMUSG00000025528) Satl1 (ENSMUSG00000025527) Apool (ENSMUSG00000025525) #15 4933403O08Rik (ENSMUSG00000079460) #16 Tex16 (ENSMUSG00000034555) Gm45194 (ENSMUSG00000109156) Hdx (ENSMUSG00000034551) #18 Rps6ka6 (ENSMUSG00000025665) #19 Cylc1 (ENSMUSG00000073001) Pou3f4 (ENSMUSG00000056854) #20 Gm6377 (ENSMUSG00000048621) Sh3bgrl (ENSMUSG00000031246) #21 Hmgn5 (ENSMUSG00000031245) Brwd3 (ENSMUSG00000063663) #22 Wmp (ENSMUSG00000073006) Tent5d (ENSMUSG00000073007) Chmp1b2 (ENSMUSG00000031242) Tbx22 (ENSMUSG00000031241) Itm2a (ENSMUSG00000031239) Gpr174 (ENSMUSG00000073008) P2ry10b (ENSMUSG00000054293) P2ry10 (ENSMUSG00000050921) Lpar4 (ENSMUSG00000049929) Rtl3 (ENSMUSG00000047686) Gm5127 (ENSMUSG00000073010) Cysltr1 (ENSMUSG00000052821) Fndc3c1 (ENSMUSG00000033737) Fnd3c2 (ENSMUSG00000073012) Taf9b (ENSMUSG00000047242) Rodentia_A ANCESTRAL SPECIES 9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000162668 ENSGT00940000163888 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00940000162668 ENSGT00940000163888 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00940000163182 Hystricomorpha_b ANCESTRAL SPECIES 113 ENSGT00940000162668 ENSGT00940000163888 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000161206 Long-tailed chinchilla MODERN SPECIES 236 POF1B (ENSCLAG00000001445) #13 ZNF711 (ENSCLAG00000006726) #14 ENSCLAG00000005441 APOOL (ENSCLAG00000005248) #15 HDX (ENSCLAG00000004931) #18 ENSCLAG00000004827 RPS6KA6 (ENSCLAG00000008786) #19 ENSCLAG00000007791 POU3F4 (ENSCLAG00000017671) #20 ENSCLAG00000007431 ENSCLAG00000007047 ENSCLAG00000006755 SH3BGRL (ENSCLAG00000006693) #21 ENSCLAG00000002689 BRWD3 (ENSCLAG00000002311) #22 ENSCLAG00000002120 TBX22 (ENSCLAG00000001961) ENSCLAG00000001888 Degu MODERN SPECIES 144 ENSODEG00000018560 CHM (ENSODEG00000001208) #11 ENSODEG00000001180 POF1B (ENSODEG00000001140) #13 ZNF711 (ENSODEG00000001046) #14 ENSODEG00000001004 ENSODEG00000000990 APOOL (ENSODEG00000000970) #15 ENSODEG00000000866 HDX (ENSODEG00000000832) #18 RPS6KA6 (ENSODEG00000003590) #19 POU3F4 (ENSODEG00000019055) #20 ENSODEG00000003430 ENSODEG00000003422 SH3BGRL (ENSODEG00000003326) #21 BRWD3 (ENSODEG00000003272) #22 ENSODEG00000003179 ENSODEG00000001423 TBX22 (ENSODEG00000001209) ENSODEG00000001116 Guinea pig MODERN SPECIES 26 ENSCPOG00000022352 ENSCPOG00000019816 ENSCPOG00000038470 ENSCPOG00000034813 PABPC5 (ENSCPOG00000002555) ENSCPOG00000006969 ENSCPOG00000038839 KLHL4 (ENSCPOG00000008909) #8 CHM (ENSCPOG00000039732) #11 POF1B (ENSCPOG00000009472) #13 ZNF711 (ENSCPOG00000009467) #14 APOOL (ENSCPOG00000036938) #15 HDX (ENSCPOG00000014501) #18 POU3F4 (ENSCPOG00000003372) #20 SH3BGRL (ENSCPOG00000012267) #21 BRWD3 (ENSCPOG00000009894) #22 ENSCPOG00000026660 GPR174 (ENSCPOG00000013180) P2RY10 (ENSCPOG00000010882) CYSLTR1 (ENSCPOG00000002100) TAF9B (ENSCPOG00000002098) PGK1 (ENSCPOG00000038840) ATP7A (ENSCPOG00000020377) ENSCPOG00000036844 MAGT1 (ENSCPOG00000027554) ATRX (ENSCPOG00000007873) FGF16 (ENSCPOG00000007870) MAGEE1 (ENSCPOG00000039465) PBDC1 (ENSCPOG00000006794) ZDHHC15 (ENSCPOG00000006742) UPRT (ENSCPOG00000035232) Naked mole-rat female MODERN SPECIES 31 APOOL (ENSHGLG00000003635) #15 ENSHGLG00000035970 ENSHGLG00000045926 HDX (ENSHGLG00000003945) #18 RPS6KA6 (ENSHGLG00000004511) #19 ENSHGLG00000037398 ENSHGLG00000040597 ENSHGLG00000050316 #20 ENSHGLG00000050061 ENSHGLG00000005940 ENSHGLG00000020202 ENSHGLG00000020488 ENSHGLG00000007062 ENSHGLG00000007722 #21 ENSHGLG00000037295 BRWD3 (ENSHGLG00000002063) #22 ENSHGLG00000041421 TENT5D (ENSHGLG00000020434) ENSHGLG00000000868 TBX22 (ENSHGLG00000001099) ENSHGLG00000001147 ITM2A (ENSHGLG00000001163) ENSHGLG00000001279 P2RY10 (ENSHGLG00000001264) ENSHGLG00000001881 ENSHGLG00000034411 ENSHGLG00000000659 NOX1 (ENSHGLG00000001560) XKRX (ENSHGLG00000001130) ENSHGLG00000032087 ENSHGLG00000044261 Sciuridae ANCESTRAL SPECIES 35 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000163888.n ENSGT00390000003732 ENSGT00940000163848 ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Marmotini ANCESTRAL SPECIES 78 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888.m ENSGT00940000163888.n ENSGT00390000002792.cb ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b Marmotini_b ANCESTRAL SPECIES 121 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000163888.n ENSGT00390000002792.cb ENSGT01000000216433 #17 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00390000015930.e.b ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00390000016617.j ENSGT00940000163592 ENSGT00940000161697 Arctic ground squirrel MODERN SPECIES 623 ENSUPAG00010011017 ENSUPAG00010011011 ENSUPAG00010011003 SH3BGRL (ENSUPAG00010010996) #21 ENSUPAG00010010988 BRWD3 (ENSUPAG00010010937) #22 Squirrel MODERN SPECIES 147 DACH2 (ENSSTOG00000006685) #9 CHM (ENSSTOG00000022111) #11 POF1B (ENSSTOG00000011717) #13 ZNF711 (ENSSTOG00000008918) #14 ENSSTOG00000029673 APOOL (ENSSTOG00000005067) #15 ENSSTOG00000023046 #16 ENSSTOG00000027226 ENSSTOG00000033550 #17 HDX (ENSSTOG00000015440) #18 RPS6KA6 (ENSSTOG00000002290) #19 POU3F4 (ENSSTOG00000026467) #20 ENSSTOG00000026305 SH3BGRL (ENSSTOG00000013216) #21 ENSSTOG00000030741 BRWD3 (ENSSTOG00000004508) #22 ENSSTOG00000032417 TENT5D (ENSSTOG00000000603) ENSSTOG00000031325 TBX22 (ENSSTOG00000003725) ENSSTOG00000034456 ITM2A (ENSSTOG00000010140) GPR174 (ENSSTOG00000010269) P2RY10 (ENSSTOG00000000139) LPAR4 (ENSSTOG00000014696) RTL3 (ENSSTOG00000027152) ENSSTOG00000029872 ENSSTOG00000021890 ENSSTOG00000003354 TAF9B (ENSSTOG00000001982) PGK1 (ENSSTOG00000001972) Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005024204 APOOL (ENSSVLG00005024251) #15 ENSSVLG00005024287 ENSSVLG00005024295 ENSSVLG00005024315 HDX (ENSSVLG00005024346) #18 RPS6KA6 (ENSSVLG00005024442) #19 CYLC1 (ENSSVLG00005024602) POU3F4 (ENSSVLG00005024640) #20 ENSSVLG00005024677 ENSSVLG00005010323 ENSSVLG00005010356 ENSSVLG00005010369 SH3BGRL (ENSSVLG00005010419) #21 ENSSVLG00005010444 BRWD3 (ENSSVLG00005010574) #22 ENSSVLG00005010912 TENT5D (ENSSVLG00005010945) ENSSVLG00005010961 ENSSVLG00005010993 TBX22 (ENSSVLG00005011035) ITM2A (ENSSVLG00005011136) GPR174 (ENSSVLG00005011269) ENSSVLG00005011291 P2RY10 (ENSSVLG00005011313) ENSSVLG00005011328 LPAR4 (ENSSVLG00005011359) RTL3 (ENSSVLG00005011379) ENSSVLG00005011426 ENSSVLG00005011444 CYSLTR1 (ENSSVLG00005011474) Lagomorpha ANCESTRAL SPECIES 95 ENSGT00950000183121.b.b.b.a ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000163888 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Rabbit MODERN SPECIES 1401 ENSOCUG00000031808 ENSOCUG00000027774 #16 HDX (ENSOCUG00000000903) #18 ENSOCUG00000006428 #19 CYLC1 (ENSOCUG00000005157) POU3F4 (ENSOCUG00000010927) #20 ENSOCUG00000021892 ENSOCUG00000005222 ENSOCUG00000029757 ENSOCUG00000027690 ENSOCUG00000025499 ENSOCUG00000028103 SH3BGRL (ENSOCUG00000014035) #21 HMGN5 (ENSOCUG00000029345) ENSOCUG00000038725 BRWD3 (ENSOCUG00000005170) #22 ENSOCUG00000026656 ENSOCUG00000031557 ENSOCUG00000022541 ENSOCUG00000021400 TENT5D (ENSOCUG00000001367) ENSOCUG00000024762 TBX22 (ENSOCUG00000013685) ENSOCUG00000033641 ITM2A (ENSOCUG00000008651) GPR174 (ENSOCUG00000005049) ENSOCUG00000024395 P2RY10 (ENSOCUG00000014507) RTL3 (ENSOCUG00000025689) ENSOCUG00000024148 CYSLTR1 (ENSOCUG00000016192) Tree shrew MODERN SPECIES 3312 ENSTBEG00000001219 #22 Primates ANCESTRAL SPECIES 19 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Strepsirrhini ANCESTRAL SPECIES 37 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00940000171348 ENSGT00950000183107.a.b.b #22 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g.a.b.a Bushbaby MODERN SPECIES 447 BRWD3 (ENSOGAG00000013597) #22 Lemuriformes ANCESTRAL SPECIES 49 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017.u #21 ENSGT00940000171348 ENSGT00940000156017.t.b #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g.a.b.a.a ENSGT00390000012030.b.a ENSGT00940000155902 Lemuriformes_a ANCESTRAL SPECIES 152 ENSGT00940000156017.t.b #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g.a.b.a.a ENSGT00390000012030.b.a ENSGT00940000155902 Greater bamboo lemur MODERN SPECIES 915 ENSPSMG00000018905 #22 Coquerels sifaka MODERN SPECIES 971 ENSPCOG00000020173 SH3BGRL (ENSPCOG00000014464) #21 BRWD3 (ENSPCOG00000017411) #22 TBX22 (ENSPCOG00000022867) ITM2A (ENSPCOG00000015645) ENSPCOG00000013558 LPAR4 (ENSPCOG00000010534) RTL3 (ENSPCOG00000016711) TAF9B (ENSPCOG00000008362) PGK1 (ENSPCOG00000027264) ENSPCOG00000018553 ATP7A (ENSPCOG00000023408) ENSPCOG00000019240 MAGT1 (ENSPCOG00000016418) ENSPCOG00000000509 ATRX (ENSPCOG00000019721) FGF16 (ENSPCOG00000004992) ENSPCOG00000023864 Mouse lemur MODERN SPECIES 169 ENSMICG00000005033 #14 ENSMICG00000045126 ENSMICG00000015844 #15 HDX (ENSMICG00000027640) #18 RPS6KA6 (ENSMICG00000006433) #19 CYLC1 (ENSMICG00000010585) POU3F4 (ENSMICG00000017301) #20 ENSMICG00000045268 ENSMICG00000004627 ENSMICG00000027473 ENSMICG00000029900 #14 ENSMICG00000029775 ENSMICG00000027761 ENSMICG00000037235 #21 ENSMICG00000041937 BRWD3 (ENSMICG00000007517) #22 ENSMICG00000007110 TBX22 (ENSMICG00000009019) ITM2A (ENSMICG00000033300) LPAR4 (ENSMICG00000046360) RTL3 (ENSMICG00000004901) ENSMICG00000042846 ENSMICG00000028928 TAF9B (ENSMICG00000037189) PGK1 (ENSMICG00000006916) ENSMICG00000037200 ATP7A (ENSMICG00000011672) MAGT1 (ENSMICG00000015284) ATRX (ENSMICG00000013935) FGF16 (ENSMICG00000004689) ENSMICG00000047222 Haplorrhini ANCESTRAL SPECIES 18 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 Tarsier MODERN SPECIES 6407 BRWD3 (ENSTSYG00000008619) #22 ENSTSYG00000028756 Simiiformes ANCESTRAL SPECIES 9 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00390000008820.e.b.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a Platyrrhini ANCESTRAL SPECIES 33 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a.e.b #15 ENSGT00530000063666.a.m.a.e.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT01030000235438 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000155436.p ENSGT00850000133588 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Cebidae ANCESTRAL SPECIES 18 ENSGT00390000003732 ENSGT00390000007879.b ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00530000063666.a.m.a.e.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT01030000235438 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000155436.p ENSGT00850000133588 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Cebidae_a ANCESTRAL SPECIES 108 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT01030000235438 ENSGT00940000161429 #20 ENSGT00950000183107.a.b.b #22 ENSGT00940000155436.p ENSGT00850000133588 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00940000163182 Capuchin MODERN SPECIES 749 HMGN5 (ENSCCAG00000021658) ENSCCAG00000026078 ENSCCAG00000019860 BRWD3 (ENSCCAG00000028800) #22 ENSCCAG00000012903 Bolivian squirrel monkey MODERN SPECIES 129 HDX (ENSSBOG00000031165) #18 RPS6KA6 (ENSSBOG00000020333) #19 ENSSBOG00000023810 POU3F4 (ENSSBOG00000016286) #20 ENSSBOG00000024578 ENSSBOG00000021712 ENSSBOG00000026727 SH3BGRL (ENSSBOG00000023513) #21 ENSSBOG00000023646 ENSSBOG00000022776 BRWD3 (ENSSBOG00000023225) #22 ENSSBOG00000026029 ENSSBOG00000029080 ENSSBOG00000022301 ENSSBOG00000030919 ITM2A (ENSSBOG00000026136) GPR174 (ENSSBOG00000036414) P2RY10 (ENSSBOG00000034403) LPAR4 (ENSSBOG00000019609) ENSSBOG00000026336 ENSSBOG00000027707 TAF9B (ENSSBOG00000013611) PGK1 (ENSSBOG00000027742) ATP7A (ENSSBOG00000022587) ENSSBOG00000027829 COX7B (ENSSBOG00000023896) Marmoset MODERN SPECIES 78 ENSCJAG00000080789 POF1B (ENSCJAG00000010342) #13 ZNF711 (ENSCJAG00000010311) #14 ENSCJAG00000008249 #15 ENSCJAG00000076835 ENSCJAG00000084688 HDX (ENSCJAG00000008295) #18 RPS6KA6 (ENSCJAG00000008317) #19 ENSCJAG00000077909 CYLC1 (ENSCJAG00000069361) POU3F4 (ENSCJAG00000002526) #20 ENSCJAG00000068028 ENSCJAG00000057987 ENSCJAG00000003568 #21 HMGN5 (ENSCJAG00000060139) BRWD3 (ENSCJAG00000019839) #22 ENSCJAG00000078872 TENT5D (ENSCJAG00000038213) ENSCJAG00000031179 TBX22 (ENSCJAG00000009617) ITM2A (ENSCJAG00000009591) GPR174 (ENSCJAG00000009588) ENSCJAG00000085348 P2RY10 (ENSCJAG00000009576) LPAR4 (ENSCJAG00000042770) ENSCJAG00000081982 ENSCJAG00000082269 ENSCJAG00000075214 CYSLTR1 (ENSCJAG00000023257) TAF9B (ENSCJAG00000019520) PGK1 (ENSCJAG00000021082) Mas night monkey MODERN SPECIES 896 SH3BGRL (ENSANAG00000033989) #21 HMGN5 (ENSANAG00000021686) ENSANAG00000023760 ENSANAG00000022748 ENSANAG00000030880 BRWD3 (ENSANAG00000008738) #22 ENSANAG00000026677 ENSANAG00000020981 TBX22 (ENSANAG00000021162) ENSANAG00000029835 ITM2A (ENSANAG00000036156) GPR174 (ENSANAG00000019966) P2RY10 (ENSANAG00000020031) LPAR4 (ENSANAG00000020241) ENSANAG00000035162 ENSANAG00000024359 ENSANAG00000033757 TAF9B (ENSANAG00000036258) PGK1 (ENSANAG00000024705) ATP7A (ENSANAG00000023455) ENSANAG00000022195 Catarrhini ANCESTRAL SPECIES 12 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 Cercopithecidae ANCESTRAL SPECIES 19 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Cercopithecinae ANCESTRAL SPECIES 13 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a.a.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT00940000155351.bb.d ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 Cercopithecinae_a ANCESTRAL SPECIES 11 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a.a.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00910000148056 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT00940000155351.bb.d ENSGT01100000263536.A.a.a.b ENSGT00950000182907.a.b.b.a.q.b ENSGT01040000240444.A.a.a.a.b ENSGT00950000183070.a.a.i.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b Cercopithecinae_b ANCESTRAL SPECIES 62 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00910000148056 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT00940000155351.bb.d ENSGT01100000263536.A.a.a.b ENSGT00950000182907.a.b.b.a.q.b ENSGT01040000240444.A.a.a.a.b ENSGT00950000183070.a.a.i.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f.b ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a Olive baboon MODERN SPECIES 792 RPS6KA6 (ENSPANG00000012943) #19 ENSPANG00000013859 ENSPANG00000048271 ENSPANG00000040401 POU3F4 (ENSPANG00000019402) #20 ENSPANG00000044225 ENSPANG00000049450 ENSPANG00000048854 ENSPANG00000044073 ENSPANG00000040118 ENSPANG00000045643 ENSPANG00000038814 SH3BGRL (ENSPANG00000008366) #21 HMGN5 (ENSPANG00000049626) ENSPANG00000002483 BRWD3 (ENSPANG00000020251) #22 ENSPANG00000045458 TENT5D (ENSPANG00000047561) TBX22 (ENSPANG00000025094) ITM2A (ENSPANG00000004635) ENSPANG00000037018 GPR174 (ENSPANG00000001913) ENSPANG00000043750 P2RY10 (ENSPANG00000010847) LPAR4 (ENSPANG00000014311) ENSPANG00000038489 ENSPANG00000041600 ENSPANG00000051297 TAF9B (ENSPANG00000006121) ENSPANG00000011695 ATP7A (ENSPANG00000019286) Cercopithecinae_d ANCESTRAL SPECIES 236 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000156017 #21 ENSGT00910000148056 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 Drill MODERN SPECIES 1713 SH3BGRL (ENSMLEG00000036272) #21 ENSMLEG00000032566 ENSMLEG00000036991 HMGN5 (ENSMLEG00000042090) ENSMLEG00000030484 BRWD3 (ENSMLEG00000033616) #22 ENSMLEG00000035128 Sooty mangabey MODERN SPECIES 210 HDX (ENSCATG00000038854) #18 RPS6KA6 (ENSCATG00000016428) #19 CYLC1 (ENSCATG00000036867) POU3F4 (ENSCATG00000019383) #20 ENSCATG00000039091 ENSCATG00000036649 ENSCATG00000013910 SH3BGRL (ENSCATG00000031766) #21 ENSCATG00000038731 HMGN5 (ENSCATG00000018617) ENSCATG00000029855 ENSCATG00000029713 BRWD3 (ENSCATG00000038615) #22 Macaca ANCESTRAL SPECIES 13 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a.b #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00910000148056 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT00940000155351.bb.d ENSGT01100000263536.A.a.a.b ENSGT00950000182907.a.b.b.a.q.b ENSGT01040000240444.A.a.a.a.b ENSGT00950000183070.a.a.i.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b Macaca_a ANCESTRAL SPECIES 11 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183123.g.a.b.b.s.a ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a.b #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00390000000153.l.b.c.b.b.s ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000166733 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT00940000155351.bb.d ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00950000183070.a.a.j.a.a.a ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a Rhesus MODERN SPECIES 327 POF1B (ENSMMUG00000013604) #13 ZNF711 (ENSMMUG00000013603) #14 ENSMMUG00000007887 SATL1 (ENSMMUG00000004336) APOOL (ENSMMUG00000004335) #15 ENSMMUG00000058186 HDX (ENSMMUG00000020536) #18 RPS6KA6 (ENSMMUG00000020532) #19 CYLC1 (ENSMMUG00000022081) POU3F4 (ENSMMUG00000003112) #20 ENSMMUG00000051358 SH3BGRL (ENSMMUG00000001689) #21 HMGN5 (ENSMMUG00000049618) ENSMMUG00000061397 ENSMMUG00000032410 BRWD3 (ENSMMUG00000010763) #22 TENT5D (ENSMMUG00000043822) ENSMMUG00000063550 TBX22 (ENSMMUG00000054447) ITM2A (ENSMMUG00000003564) ENSMMUG00000056870 GPR174 (ENSMMUG00000047442) ENSMMUG00000032415 P2RY10 (ENSMMUG00000052164) LPAR4 (ENSMMUG00000052823) ENSMMUG00000029246 CYSLTR1 (ENSMMUG00000013387) TAF9B (ENSMMUG00000012875) PGK1 (ENSMMUG00000012874) ATP7A (ENSMMUG00000012871) COX7B (ENSMMUG00000015861) Crab-eating macaque MODERN SPECIES 175 CYLC1 (ENSMFAG00000044830) ENSMFAG00000048140 POU3F4 (ENSMFAG00000027128) #20 ENSMFAG00000053410 ENSMFAG00000035175 ENSMFAG00000057041 ENSMFAG00000052377 ENSMFAG00000064912 ENSMFAG00000003130 ENSMFAG00000057440 SH3BGRL (ENSMFAG00000031027) #21 ENSMFAG00000064363 HMGN5 (ENSMFAG00000043155) ENSMFAG00000065005 ENSMFAG00000046303 BRWD3 (ENSMFAG00000043437) #22 TENT5D (ENSMFAG00000059694) ENSMFAG00000058505 TBX22 (ENSMFAG00000000575) ENSMFAG00000050209 ITM2A (ENSMFAG00000037997) GPR174 (ENSMFAG00000048513) ENSMFAG00000058091 P2RY10 (ENSMFAG00000065797) LPAR4 (ENSMFAG00000025015) ENSMFAG00000031310 CYSLTR1 (ENSMFAG00000053095) TAF9B (ENSMFAG00000045420) ENSMFAG00000031271 ATP7A (ENSMFAG00000037371) COX7B (ENSMFAG00000002971) Pig-tailed macaque MODERN SPECIES 85 ENSMNEG00000040680 ENSMNEG00000039695 SH3BGRL (ENSMNEG00000032748) #21 ENSMNEG00000036403 HMGN5 (ENSMNEG00000029641) ENSMNEG00000038133 ENSMNEG00000003904 BRWD3 (ENSMNEG00000028960) #22 TBX22 (ENSMNEG00000002289) ITM2A (ENSMNEG00000028333) GPR174 (ENSMNEG00000015097) ENSMNEG00000004426 P2RY10 (ENSMNEG00000001678) ENSMNEG00000039449 LPAR4 (ENSMNEG00000026886) ENSMNEG00000034394 ENSMNEG00000030251 CYSLTR1 (ENSMNEG00000013446) TAF9B (ENSMNEG00000040165) ENSMNEG00000034194 ATP7A (ENSMNEG00000018557) ENSMNEG00000033259 MAGT1 (ENSMNEG00000039288) Vervet Monkey MODERN SPECIES 203 ENSCSAG00000000071 KLHL4 (ENSCSAG00000010443) #8 DACH2 (ENSCSAG00000010460) #9 CHM (ENSCSAG00000010508) #11 ENSCSAG00000010519 #13 ZNF711 (ENSCSAG00000010527) #14 SATL1 (ENSCSAG00000010536) HDX (ENSCSAG00000010546) #18 RPS6KA6 (ENSCSAG00000010555) #19 CYLC1 (ENSCSAG00000010571) POU3F4 (ENSCSAG00000000074) #20 ENSCSAG00000010588 SH3BGRL (ENSCSAG00000010614) #21 HMGN5 (ENSCSAG00000010621) ENSCSAG00000000076 BRWD3 (ENSCSAG00000010659) #22 ENSCSAG00000010700 TENT5D (ENSCSAG00000000078) TBX22 (ENSCSAG00000010713) ITM2A (ENSCSAG00000010721) GPR174 (ENSCSAG00000000080) ENSCSAG00000000082 P2RY10 (ENSCSAG00000000084) LPAR4 (ENSCSAG00000000086) CYSLTR1 (ENSCSAG00000000088) TAF9B (ENSCSAG00000010740) ENSCSAG00000010747 ATP7A (ENSCSAG00000010766) MAGT1 (ENSCSAG00000010777) ATRX (ENSCSAG00000010797) FGF16 (ENSCSAG00000010806) Rhinopithecus ANCESTRAL SPECIES ENSGT00950000183107.a.b.b #22 Golden snub-nosed monkey MODERN SPECIES 1102 BRWD3 (ENSRROG00000033259) #22 Black snub-nosed monkey MODERN SPECIES 1763 BRWD3 (ENSRBIG00000038419) #22 Hominoidea ANCESTRAL SPECIES 16 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00940000154911.v ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Hominidae ANCESTRAL SPECIES 8 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00940000154911.v ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00390000008820.e.b.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 Homo/Pan/Gorilla group ANCESTRAL SPECIES 9 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00940000154911.v ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000153314.b ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00390000008820.e.b.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 Homo/Pan group ANCESTRAL SPECIES 9 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00940000154911.v ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000153314.b ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Pan ANCESTRAL SPECIES 6 ENSGT00390000001134.b #9 ENSGT00940000154911.v ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.m.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000153314.b ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000182869.e.a.b.sb.b.a.a.a ENSGT00950000183107.a.b.b #22 ENSGT00950000182787.C.d ENSGT00940000162350.b.a ENSGT00940000162350.b.b ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697.f ENSGT00390000008820.e.b.a.b ENSGT00390000008820.e.b.b ENSGT00940000159568 ENSGT00390000012178.g.a.b.b Bonobo MODERN SPECIES 369 ENSPPAG00000028498 POF1B (ENSPPAG00000033485) #13 ZNF711 (ENSPPAG00000038129) #14 ENSPPAG00000033891 APOOL (ENSPPAG00000037582) #15 HDX (ENSPPAG00000031927) #18 RPS6KA6 (ENSPPAG00000010461) #19 CYLC1 (ENSPPAG00000019947) ENSPPAG00000043882 POU3F4 (ENSPPAG00000017170) #20 ENSPPAG00000040389 ENSPPAG00000037558 SH3BGRL (ENSPPAG00000035293) #21 ENSPPAG00000037242 ENSPPAG00000037661 BRWD3 (ENSPPAG00000036225) #22 ENSPPAG00000038929 ENSPPAG00000019114 ENSPPAG00000042789 TBX22 (ENSPPAG00000040549) ITM2A (ENSPPAG00000031833) GPR174 (ENSPPAG00000016269) CYSLTR1 (ENSPPAG00000008752) TAF9B (ENSPPAG00000042950) ENSPPAG00000039675 ATP7A (ENSPPAG00000041943) COX7B (ENSPPAG00000038135) MAGT1 (ENSPPAG00000037154) ATRX (ENSPPAG00000043806) FGF16 (ENSPPAG00000033879) MAGEE1 (ENSPPAG00000023414) Chimpanzee MODERN SPECIES 972 CHM (ENSPTRG00000022071) #11 POF1B (ENSPTRG00000022070) #13 ZNF711 (ENSPTRG00000022069) #14 ENSPTRG00000022068 ENSPTRG00000043670 APOOL (ENSPTRG00000022067) #15 ENSPTRG00000048780 HDX (ENSPTRG00000022065) #18 RPS6KA6 (ENSPTRG00000022064) #19 CYLC1 (ENSPTRG00000022063) POU3F4 (ENSPTRG00000040705) #20 ENSPTRG00000047666 SH3BGRL (ENSPTRG00000022061) #21 HMGN5 (ENSPTRG00000022527) ENSPTRG00000048534 BRWD3 (ENSPTRG00000022060) #22 ENSPTRG00000045129 ENSPTRG00000046735 ENSPTRG00000047256 TENT5D (ENSPTRG00000049359) TBX22 (ENSPTRG00000022058) ITM2A (ENSPTRG00000022057) GPR174 (ENSPTRG00000039454) P2RY10 (ENSPTRG00000050132) LPAR4 (ENSPTRG00000022056) CYSLTR1 (ENSPTRG00000022054) TAF9B (ENSPTRG00000022053) PGK1 (ENSPTRG00000022052) ATP7A (ENSPTRG00000022050) COX7B (ENSPTRG00000022049) MAGT1 (ENSPTRG00000022048) Human MODERN SPECIES 1827 TGIF2LX (ENSG00000153779) CPXCR1 (ENSG00000147183) KLHL4 (ENSG00000102271) #8 DACH2 (ENSG00000126733) #9 CHM (ENSG00000188419) #11 POF1B (ENSG00000124429) #13 ZNF711 (ENSG00000147180) #14 SATL1 (ENSG00000184788) APOOL (ENSG00000155008) #15 HDX (ENSG00000165259) #18 RPS6KA6 (ENSG00000072133) #19 CYLC1 (ENSG00000183035) POU3F4 (ENSG00000196767) #20 SH3BGRL (ENSG00000131171) #21 HMGN5 (ENSG00000198157) BRWD3 (ENSG00000165288) #22 TENT5D (ENSG00000174016) TBX22 (ENSG00000122145) ITM2A (ENSG00000078596) GPR174 (ENSG00000147138) P2RY10 (ENSG00000078589) LPAR4 (ENSG00000147145) RTL3 (ENSG00000179300) CYSLTR1 (ENSG00000173198) TAF9B (ENSG00000187325) PGAM4 (ENSG00000226784) PGK1 (ENSG00000102144) ATP7A (ENSG00000165240) COX7B (ENSG00000131174) MAGT1 (ENSG00000102158) ATRX (ENSG00000085224) Gorilla MODERN SPECIES 523 CHM (ENSGGOG00000022912) #11 POF1B (ENSGGOG00000016908) #13 ZNF711 (ENSGGOG00000006110) #14 SATL1 (ENSGGOG00000016333) ENSGGOG00000016329 #15 HDX (ENSGGOG00000005551) #18 RPS6KA6 (ENSGGOG00000016474) #19 CYLC1 (ENSGGOG00000001587) POU3F4 (ENSGGOG00000027353) #20 ENSGGOG00000025534 SH3BGRL (ENSGGOG00000009664) #21 HMGN5 (ENSGGOG00000016479) ENSGGOG00000039492 ENSGGOG00000037044 ENSGGOG00000039837 BRWD3 (ENSGGOG00000004108) #22 ENSGGOG00000015916 ENSGGOG00000043041 TBX22 (ENSGGOG00000008990) ITM2A (ENSGGOG00000026998) GPR174 (ENSGGOG00000024322) CYSLTR1 (ENSGGOG00000003276) TAF9B (ENSGGOG00000002470) PGK1 (ENSGGOG00000017111) ATP7A (ENSGGOG00000025640) COX7B (ENSGGOG00000023347) MAGT1 (ENSGGOG00000010342) ATRX (ENSGGOG00000024999) FGF16 (ENSGGOG00000002237) ENSGGOG00000025599 ENSGGOG00000027341 Orangutan MODERN SPECIES 242 PABPC5 (ENSPPYG00000020526) TGIF2LX (ENSPPYG00000020525) KLHL4 (ENSPPYG00000020523) #8 DACH2 (ENSPPYG00000020521) #9 CHM (ENSPPYG00000020520) #11 POF1B (ENSPPYG00000020519) #13 ZNF711 (ENSPPYG00000020518) #14 SATL1 (ENSPPYG00000020517) APOOL (ENSPPYG00000020516) #15 HDX (ENSPPYG00000020514) #18 RPS6KA6 (ENSPPYG00000020513) #19 CYLC1 (ENSPPYG00000020512) POU3F4 (ENSPPYG00000020510) #20 SH3BGRL (ENSPPYG00000020509) #21 HMGN5 (ENSPPYG00000020508) BRWD3 (ENSPPYG00000020507) #22 TBX22 (ENSPPYG00000020504) ITM2A (ENSPPYG00000020503) GPR174 (ENSPPYG00000020502) P2RY10 (ENSPPYG00000020501) LPAR4 (ENSPPYG00000020500) CYSLTR1 (ENSPPYG00000020498) TAF9B (ENSPPYG00000020497) PGK1 (ENSPPYG00000020496) ATP7A (ENSPPYG00000020495) COX7B (ENSPPYG00000020494) MAGT1 (ENSPPYG00000020493) ATRX (ENSPPYG00000020491) FGF16 (ENSPPYG00000036906) MAGEE1 (ENSPPYG00000020489) PBDC1 (ENSPPYG00000020488) Gibbon DUPLICATION Gibbon MODERN SPECIES 449 ENSNLEG00000027890 CHM (ENSNLEG00000002762) #11 ENSNLEG00000032608 POF1B (ENSNLEG00000002694) #13 ZNF711 (ENSNLEG00000002656) #14 APOOL (ENSNLEG00000002634) #15 HDX (ENSNLEG00000002624) #18 RPS6KA6 (ENSNLEG00000002544) #19 CYLC1 (ENSNLEG00000002527) ENSNLEG00000032492 ENSNLEG00000028823 SH3BGRL (ENSNLEG00000002464) #21 HMGN5 (ENSNLEG00000034708) ENSNLEG00000034864 ENSNLEG00000034470 BRWD3 (ENSNLEG00000002210) #22 ENSNLEG00000029546 TBX22 (ENSNLEG00000002116) GPR174 (ENSNLEG00000019047) ENSNLEG00000034148 P2RY10 (ENSNLEG00000002088) LPAR4 (ENSNLEG00000019046) ENSNLEG00000002074 CYSLTR1 (ENSNLEG00000002067) TAF9B (ENSNLEG00000001378) ENSNLEG00000001423 ATP7A (ENSNLEG00000001351) MAGT1 (ENSNLEG00000001330) ATRX (ENSNLEG00000001144) FGF16 (ENSNLEG00000001138) ENSNLEG00000001137 Gibbon DUPLICATION Gibbon MODERN SPECIES 9 ENSNLEG00000014270 ENSNLEG00000018294 NBAS (ENSNLEG00000014272) DDX1 (ENSNLEG00000014417) ENSNLEG00000014496 ENSNLEG00000031164 CYRIA (ENSNLEG00000001413) RAD51AP2 (ENSNLEG00000001524) VSNL1 (ENSNLEG00000001537) SMC6 (ENSNLEG00000001569) GEN1 (ENSNLEG00000029593) MSGN1 (ENSNLEG00000018810) KCNS3 (ENSNLEG00000001834) RDH14 (ENSNLEG00000028221) NT5C1B (ENSNLEG00000001850) ENSNLEG00000033627 #22 OSR1 (ENSNLEG00000002004) ENSNLEG00000028344 TTC32 (ENSNLEG00000030350) WDR35 (ENSNLEG00000002032) MATN3 (ENSNLEG00000002247) LAPTM4A (ENSNLEG00000002305) SDC1 (ENSNLEG00000031569) ENSNLEG00000029549 ENSNLEG00000002506 PUM2 (ENSNLEG00000002509) RHOB (ENSNLEG00000030179) ENSNLEG00000030630 HS1BP3 (ENSNLEG00000002614) GDF7 (ENSNLEG00000002638) LDAH (ENSNLEG00000032022) Gibbon MODERN SPECIES 15 CAPZA3 (ENSNLEG00000018528) PLCZ1 (ENSNLEG00000004405) PIK3C2G (ENSNLEG00000004329) RERGL (ENSNLEG00000004322) ENSNLEG00000031747 ENSNLEG00000027110 ENSNLEG00000004291 ENSNLEG00000027116 MGST1 (ENSNLEG00000004275) SLC15A5 (ENSNLEG00000004266) DERA (ENSNLEG00000004222) STRAP (ENSNLEG00000004160) EPS8 (ENSNLEG00000004075) PTPRO (ENSNLEG00000004033) RERG (ENSNLEG00000029492) ENSNLEG00000034206 #22 PDE6H (ENSNLEG00000004014) ARHGDIB (ENSNLEG00000003994) ERP27 (ENSNLEG00000003988) ENSNLEG00000031944 ENSNLEG00000003978 ART4 (ENSNLEG00000003973) C12orf60 (ENSNLEG00000003965) SMCO3 (ENSNLEG00000033132) WBP11 (ENSNLEG00000003926) ENSNLEG00000029275 GUCY2C (ENSNLEG00000003853) ENSNLEG00000035153 PLBD1 (ENSNLEG00000003815) ATF7IP (ENSNLEG00000003788) GRIN2B (ENSNLEG00000003765) Laurasiatheria ANCESTRAL SPECIES 16 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Laurasiatheria_a ANCESTRAL SPECIES 10 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Laurasiatheria_b ANCESTRAL SPECIES 10 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Laurasiatheria_c ANCESTRAL SPECIES 10 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00940000163888 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Chiroptera ANCESTRAL SPECIES 28 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT00390000015224.c.a.a.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 Megabat MODERN SPECIES 1956 BRWD3 (ENSPVAG00000013684) #22 Microchiroptera ANCESTRAL SPECIES 28 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00530000067269 #16 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Microbat MODERN SPECIES 941 APOOL (ENSMLUG00000011384) #15 ENSMLUG00000026037 #16 ENSMLUG00000022222 ENSMLUG00000027285 ENSMLUG00000006649 #18 ENSMLUG00000027800 #18 RPS6KA6 (ENSMLUG00000015440) #19 ENSMLUG00000011590 POU3F4 (ENSMLUG00000004140) #20 ENSMLUG00000006065 ENSMLUG00000025070 SH3BGRL (ENSMLUG00000010051) #21 HMGN5 (ENSMLUG00000029467) ENSMLUG00000024815 ENSMLUG00000013978 BRWD3 (ENSMLUG00000005607) #22 TENT5D (ENSMLUG00000000409) ENSMLUG00000024811 TBX22 (ENSMLUG00000016826) ITM2A (ENSMLUG00000010431) ENSMLUG00000025668 GPR174 (ENSMLUG00000005162) ENSMLUG00000025815 P2RY10 (ENSMLUG00000010499) LPAR4 (ENSMLUG00000006096) RTL3 (ENSMLUG00000002371) TAF9B (ENSMLUG00000014581) PGK1 (ENSMLUG00000017791) ENSMLUG00000026413 ATP7A (ENSMLUG00000025990) ENSMLUG00000022443 Greater horseshoe bat MODERN SPECIES POF1B (ENSRFEG00010004986) #13 ZNF711 (ENSRFEG00010005016) #14 ENSRFEG00010005034 ENSRFEG00010005042 #15 ENSRFEG00010005048 HDX (ENSRFEG00010005055) #18 ENSRFEG00010005063 RPS6KA6 (ENSRFEG00010005068) #19 CYLC1 (ENSRFEG00010005076) ENSRFEG00010005081 POU3F4 (ENSRFEG00010005086) #20 ENSRFEG00010005097 ENSRFEG00010005101 SH3BGRL (ENSRFEG00010005104) #21 HMGN5 (ENSRFEG00010005112) BRWD3 (ENSRFEG00010005125) #22 TENT5D (ENSRFEG00010005151) ENSRFEG00010005160 TBX22 (ENSRFEG00010005171) ENSRFEG00010005179 ITM2A (ENSRFEG00010005189) GPR174 (ENSRFEG00010005200) P2RY10 (ENSRFEG00010005207) LPAR4 (ENSRFEG00010005218) RTL3 (ENSRFEG00010005225) ENSRFEG00010005233 CYSLTR1 (ENSRFEG00010005241) ENSRFEG00010005245 ENSRFEG00010005262 ENSRFEG00010005274 TAF9B (ENSRFEG00010005277) Equus ANCESTRAL SPECIES 27 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000163888.c.b ENSGT00940000163888.d ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00940000171348 ENSGT00950000183107.a.b.b #22 ENSGT00390000015252.z ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 Donkey MODERN SPECIES 36 ENSEASG00005033831 ENSEASG00005011122 APOOL (ENSEASG00005011125) #15 ENSEASG00005036812 ENSEASG00005034949 ENSEASG00005033871 HDX (ENSEASG00005027565) #18 RPS6KA6 (ENSEASG00005029386) #19 CYLC1 (ENSEASG00005017371) POU3F4 (ENSEASG00005005148) #20 ENSEASG00005035953 ENSEASG00005033419 ENSEASG00005010782 SH3BGRL (ENSEASG00005032697) #21 ENSEASG00005030462 BRWD3 (ENSEASG00005012247) #22 ENSEASG00005007773 TENT5D (ENSEASG00005036140) ENSEASG00005035394 TBX22 (ENSEASG00005034364) ITM2A (ENSEASG00005021993) GPR174 (ENSEASG00005033902) ENSEASG00005025689 P2RY10 (ENSEASG00005024071) LPAR4 (ENSEASG00005032556) RTL3 (ENSEASG00005024251) CYSLTR1 (ENSEASG00005033616) ENSEASG00005033851 TAF9B (ENSEASG00005006471) PGK1 (ENSEASG00005006468) ATP7A (ENSEASG00005005867) Horse MODERN SPECIES 480 APOOL (ENSECAG00000009229) #15 ENSECAG00000035131 ENSECAG00000007854 ENSECAG00000036171 HDX (ENSECAG00000024862) #18 RPS6KA6 (ENSECAG00000019431) #19 CYLC1 (ENSECAG00000019066) POU3F4 (ENSECAG00000002519) #20 ENSECAG00000058100 ENSECAG00000038924 ENSECAG00000047832 ENSECAG00000002165 SH3BGRL (ENSECAG00000012612) #21 ENSECAG00000033394 ENSECAG00000054141 BRWD3 (ENSECAG00000007187) #22 ENSECAG00000028456 TENT5D (ENSECAG00000055387) ENSECAG00000018625 TBX22 (ENSECAG00000014426) ENSECAG00000033730 ITM2A (ENSECAG00000011335) GPR174 (ENSECAG00000032528) ENSECAG00000003466 P2RY10 (ENSECAG00000003181) LPAR4 (ENSECAG00000041218) RTL3 (ENSECAG00000029496) CYSLTR1 (ENSECAG00000007107) ENSECAG00000015462 TAF9B (ENSECAG00000010189) PGK1 (ENSECAG00000014984) Carnivora ANCESTRAL SPECIES 11 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.a.b Felidae ANCESTRAL SPECIES 12 ENSGT00940000162668 ENSGT00940000163848 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a.c #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00530000063666.a.c #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00940000159568 ENSGT00390000012178.g.b.a.a ENSGT00390000012030.b.a ENSGT00940000155902 Panthera ANCESTRAL SPECIES 51 ENSGT00940000157822 ENSGT00530000065541 ENSGT00940000158335 ENSGT00940000162668 ENSGT00940000163848 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a.c #11 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 Panthera_a ANCESTRAL SPECIES 59 ENSGT00940000157822 ENSGT00940000158335 ENSGT00980000199103.A ENSGT00940000162668 ENSGT00940000163848 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a.c #11 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 lion MODERN SPECIES 88 ENSPLOG00000015940 ENSPLOG00000015979 PABPC5 (ENSPLOG00000016010) ENSPLOG00000016027 KLHL4 (ENSPLOG00000016046) #8 DACH2 (ENSPLOG00000016162) #9 ENSPLOG00000016565 #11 ENSPLOG00000016617 HDX (ENSPLOG00000016668) #18 RPS6KA6 (ENSPLOG00000016820) #19 CYLC1 (ENSPLOG00000017131) POU3F4 (ENSPLOG00000017183) #20 ENSPLOG00000017210 SH3BGRL (ENSPLOG00000017246) #21 ENSPLOG00000017281 BRWD3 (ENSPLOG00000017318) #22 TENT5D (ENSPLOG00000017623) ENSPLOG00000017648 P2RY10 (ENSPLOG00000017725) LPAR4 (ENSPLOG00000017742) CYSLTR1 (ENSPLOG00000017757) TAF9B (ENSPLOG00000017774) ENSPLOG00000017801 CFAP47 (ENSPLOG00000017913) MAGEB16 (ENSPLOG00000018561) ENSPLOG00000018607 TMEM47 (ENSPLOG00000018651) ENSPLOG00000018687 ENSPLOG00000018761 ENSPLOG00000018811 ENSPLOG00000019098 leopard MODERN SPECIES 125 ENSPPRG00000017727 HDX (ENSPPRG00000018008) #18 RPS6KA6 (ENSPPRG00000018928) #19 CYLC1 (ENSPPRG00000019163) POU3F4 (ENSPPRG00000012512) #20 ENSPPRG00000019280 ENSPPRG00000019532 SH3BGRL (ENSPPRG00000019552) #21 ENSPPRG00000012518 BRWD3 (ENSPPRG00000019725) #22 TENT5D (ENSPPRG00000012522) ENSPPRG00000019889 Tiger MODERN SPECIES 266 ENSPTIG00000020470 SH3BGRL (ENSPTIG00000020533) #21 BRWD3 (ENSPTIG00000020773) #22 TENT5D (ENSPTIG00000000234) Cat MODERN SPECIES 252 DACH2 (ENSFCAG00000022761) #9 CHM (ENSFCAG00000030652) #11 POF1B (ENSFCAG00000031668) #13 ZNF711 (ENSFCAG00000013317) #14 APOOL (ENSFCAG00000033790) #15 ENSFCAG00000051849 HDX (ENSFCAG00000005781) #18 ENSFCAG00000039681 RPS6KA6 (ENSFCAG00000009130) #19 CYLC1 (ENSFCAG00000012662) ENSFCAG00000048151 POU3F4 (ENSFCAG00000011964) #20 ENSFCAG00000025360 SH3BGRL (ENSFCAG00000030770) #21 ENSFCAG00000037632 BRWD3 (ENSFCAG00000022198) #22 TENT5D (ENSFCAG00000031837) ENSFCAG00000018360 TBX22 (ENSFCAG00000002301) ITM2A (ENSFCAG00000007957) P2RY10 (ENSFCAG00000035535) CYSLTR1 (ENSFCAG00000024786) ENSFCAG00000022156 TAF9B (ENSFCAG00000025493) ENSFCAG00000013209 ENSFCAG00000034406 ENSFCAG00000053752 ATP7A (ENSFCAG00000022051) COX7B (ENSFCAG00000033601) MAGT1 (ENSFCAG00000024932) ATRX (ENSFCAG00000030040) Caniformia ANCESTRAL SPECIES 22 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.a.b.d.a ENSGT00390000012030.b.a ENSGT00940000155902 Canidae ANCESTRAL SPECIES 59 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00950000185197 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00950000185204 ENSGT00390000012178.g.b.a.b.d.a.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00390000016333.r ENSGT00940000163487 Canis_lupus ANCESTRAL SPECIES 44 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00940000154191.i.a.l.a.b ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.e #15 ENSGT00950000185197 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000153288.a.b.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.a.b.d.a.a ENSGT00950000185204 ENSGT00390000012178.g.b.a.b.d.a.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Dog MODERN SPECIES 144 POF1B (ENSCAFG00845024223) #13 ZNF711 (ENSCAFG00845023911) #14 ENSCAFG00845023827 ENSCAFG00845023778 APOOL (ENSCAFG00845023656) #15 ENSCAFG00845023591 ENSCAFG00845023552 RPS6KA6 (ENSCAFG00845022907) #19 CYLC1 (ENSCAFG00845022676) POU3F4 (ENSCAFG00845022645) #20 ENSCAFG00845022569 ENSCAFG00845022468 ENSCAFG00845022429 SH3BGRL (ENSCAFG00845022327) #21 ENSCAFG00845022233 BRWD3 (ENSCAFG00845021308) #22 TENT5D (ENSCAFG00845021138) GPR174 (ENSCAFG00845021116) P2RY10 (ENSCAFG00845021084) ENSCAFG00845021038 LPAR4 (ENSCAFG00845021017) ENSCAFG00845020985 ENSCAFG00845020948 CYSLTR1 (ENSCAFG00845020915) TAF9B (ENSCAFG00845020868) PGK1 (ENSCAFG00845020758) ENSCAFG00845020708 ATP7A (ENSCAFG00845020199) ENSCAFG00845020039 ENSCAFG00845020008 MAGT1 (ENSCAFG00845019924) Dingo MODERN SPECIES 265 ENSCAFG00020025040 ENSCAFG00020025039 ENSCAFG00020025029 SH3BGRL (ENSCAFG00020025027) #21 ENSCAFG00020025022 BRWD3 (ENSCAFG00020025005) #22 TENT5D (ENSCAFG00020025000) GPR174 (ENSCAFG00020024998) ENSCAFG00020024996 P2RY10 (ENSCAFG00020024995) ENSCAFG00020024991 LPAR4 (ENSCAFG00020024989) ENSCAFG00020024988 ENSCAFG00020024987 CYSLTR1 (ENSCAFG00020024986) TAF9B (ENSCAFG00020024984) PGK1 (ENSCAFG00020024764) ATP7A (ENSCAFG00020024712) ENSCAFG00020024708 ENSCAFG00020024706 MAGT1 (ENSCAFG00020024703) Red fox MODERN SPECIES 287 ENSVVUG00000027975 BRWD3 (ENSVVUG00000027981) #22 TENT5D (ENSVVUG00000027995) Caniformia_b ANCESTRAL SPECIES 24 ENSGT00390000003732 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.a.b.d.a ENSGT00390000012178.g.b.a.b.d.b.a ENSGT00390000012030.b.a Ursidae ANCESTRAL SPECIES 47 ENSGT00940000160311 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b.e.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.a.b.d.b.a ENSGT00390000012030.b.a Giant Panda MODERN SPECIES 2288 KLHL4 (ENSAMEG00000004825) #8 DACH2 (ENSAMEG00000000232) #9 ENSAMEG00000018811 CHM (ENSAMEG00000010190) #11 POF1B (ENSAMEG00000013055) #13 ZNF711 (ENSAMEG00000013076) #14 ENSAMEG00000000814 APOOL (ENSAMEG00000000829) #15 ENSAMEG00000019387 HDX (ENSAMEG00000000875) #18 RPS6KA6 (ENSAMEG00000003648) #19 CYLC1 (ENSAMEG00000002561) POU3F4 (ENSAMEG00000019562) #20 SH3BGRL (ENSAMEG00000027788) #21 HMGN5 (ENSAMEG00000030368) BRWD3 (ENSAMEG00000008691) #22 TENT5D (ENSAMEG00000018974) ITM2A (ENSAMEG00000006587) GPR174 (ENSAMEG00000020171) P2RY10 (ENSAMEG00000020169) LPAR4 (ENSAMEG00000020009) ENSAMEG00000024348 CYSLTR1 (ENSAMEG00000019893) TAF9B (ENSAMEG00000017613) ENSAMEG00000017619 ATP7A (ENSAMEG00000017631) COX7B (ENSAMEG00000028958) MAGT1 (ENSAMEG00000006102) ENSAMEG00000030323 ATRX (ENSAMEG00000001904) FGF16 (ENSAMEG00000031057) Ursus ANCESTRAL SPECIES 203 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b.e.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a Polar bear MODERN SPECIES 224 CHM (ENSUMAG00000023882) #11 POF1B (ENSUMAG00000023875) #13 ZNF711 (ENSUMAG00000023873) #14 ENSUMAG00000023871 APOOL (ENSUMAG00000023869) #15 ENSUMAG00000023865 HDX (ENSUMAG00000023864) #18 ENSUMAG00000023863 #19 CYLC1 (ENSUMAG00000023861) POU3F4 (ENSUMAG00000023858) #20 ENSUMAG00000023857 ENSUMAG00000023853 ENSUMAG00000023847 SH3BGRL (ENSUMAG00000023846) #21 ENSUMAG00000023844 BRWD3 (ENSUMAG00000023646) #22 TENT5D (ENSUMAG00000023620) ENSUMAG00000023617 TBX22 (ENSUMAG00000023615) ITM2A (ENSUMAG00000023612) GPR174 (ENSUMAG00000023611) ENSUMAG00000023610 American black bear MODERN SPECIES 2267 ENSUAMG00000018928 #22 Mustelinae ANCESTRAL SPECIES 246 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 American mink MODERN SPECIES 563 BRWD3 (ENSNVIG00000012320) #22 Ferret MODERN SPECIES 523 BRWD3 (ENSMPUG00000012613) #22 TENT5D (ENSMPUG00000019452) TBX22 (ENSMPUG00000012619) Artiodactyla ANCESTRAL SPECIES 9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 Suina ANCESTRAL SPECIES 7 ENSGT00940000163888 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g.b.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Chacoan peccary MODERN SPECIES 22 HDX (ENSCWAG00000001492) #18 RPS6KA6 (ENSCWAG00000001536) #19 CYLC1 (ENSCWAG00000001581) ENSCWAG00000001587 POU3F4 (ENSCWAG00000001596) #20 SH3BGRL (ENSCWAG00000001606) #21 ENSCWAG00000001613 BRWD3 (ENSCWAG00000001634) #22 TENT5D (ENSCWAG00000001683) TBX22 (ENSCWAG00000001694) ENSCWAG00000001703 ITM2A (ENSCWAG00000001718) GPR174 (ENSCWAG00000001736) P2RY10 (ENSCWAG00000001742) LPAR4 (ENSCWAG00000001749) CYSLTR1 (ENSCWAG00000001770) ENSCWAG00000001774 TAF9B (ENSCWAG00000001780) PGK1 (ENSCWAG00000001796) ENSCWAG00000001817 ATP7A (ENSCWAG00000001849) COX7B (ENSCWAG00000001934) MAGT1 (ENSCWAG00000001949) Pig MODERN SPECIES 300 POF1B (ENSSSCG00000012462) #13 ZNF711 (ENSSSCG00000021601) #14 ENSSSCG00000023546 ENSSSCG00000038238 APOOL (ENSSSCG00000012459) #15 ENSSSCG00000044442 HDX (ENSSSCG00000038744) #18 RPS6KA6 (ENSSSCG00000012456) #19 CYLC1 (ENSSSCG00000012455) POU3F4 (ENSSSCG00000012454) #20 ENSSSCG00000040430 ENSSSCG00000031731 ENSSSCG00000012452 #21 ENSSSCG00000032946 ENSSSCG00000038944 BRWD3 (ENSSSCG00000025156) #22 TENT5D (ENSSSCG00000012450) TBX22 (ENSSSCG00000012449) ITM2A (ENSSSCG00000012448) ENSSSCG00000045237 GPR174 (ENSSSCG00000021734) P2RY10 (ENSSSCG00000012446) LPAR4 (ENSSSCG00000012445) ENSSSCG00000052427 ENSSSCG00000052341 CYSLTR1 (ENSSSCG00000039203) TAF9B (ENSSSCG00000026714) PGK1 (ENSSSCG00000012440) ENSSSCG00000030886 ATP7A (ENSSSCG00000012437) COX7B (ENSSSCG00000032129) Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.b Camelidae ANCESTRAL SPECIES 43 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.b ENSGT00390000012030.b.a Arabian camel MODERN SPECIES 204 ZNF711 (ENSCDRG00005021254) #14 ENSCDRG00005021249 ENSCDRG00005021246 APOOL (ENSCDRG00005021240) #15 ENSCDRG00005021233 HDX (ENSCDRG00005021225) #18 ENSCDRG00005021222 RPS6KA6 (ENSCDRG00005021214) #19 CYLC1 (ENSCDRG00005021207) POU3F4 (ENSCDRG00005021206) #20 ENSCDRG00005021204 ENSCDRG00005021199 ENSCDRG00005021194 SH3BGRL (ENSCDRG00005021189) #21 ENSCDRG00005021186 BRWD3 (ENSCDRG00005021171) #22 TENT5D (ENSCDRG00005021162) ENSCDRG00005021154 TBX22 (ENSCDRG00005021148) ITM2A (ENSCDRG00005021142) GPR174 (ENSCDRG00005021134) ENSCDRG00005021132 P2RY10 (ENSCDRG00005021126) LPAR4 (ENSCDRG00005021124) RTL3 (ENSCDRG00005021121) CYSLTR1 (ENSCDRG00005021119) TAF9B (ENSCDRG00005021113) PGK1 (ENSCDRG00005021108) ATP7A (ENSCDRG00005021074) COX7B (ENSCDRG00005021062) MAGT1 (ENSCDRG00005021053) Alpaca MODERN SPECIES 1628 BRWD3 (ENSVPAG00000002929) #22 Artiodactyla_b ANCESTRAL SPECIES 19 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.b ENSGT00390000012030.b.a Pecora ANCESTRAL SPECIES 27 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Yarkand deer MODERN SPECIES 1323 HDX (ENSCHYG00000021734) #18 RPS6KA6 (ENSCHYG00000021809) #19 ENSCHYG00000022413 ENSCHYG00000022431 CYLC1 (ENSCHYG00000022460) ENSCHYG00000022492 POU3F4 (ENSCHYG00000022504) #20 ENSCHYG00000022538 ENSCHYG00000022587 ENSCHYG00000008699 ENSCHYG00000008712 SH3BGRL (ENSCHYG00000008735) #21 ENSCHYG00000008778 ENSCHYG00000008869 ENSCHYG00000008921 BRWD3 (ENSCHYG00000008984) #22 ENSCHYG00000009463 ENSCHYG00000009482 TENT5D (ENSCHYG00000009524) ENSCHYG00000009550 TBX22 (ENSCHYG00000009606) ITM2A (ENSCHYG00000009688) GPR174 (ENSCHYG00000009735) P2RY10 (ENSCHYG00000009753) LPAR4 (ENSCHYG00000009794) CYSLTR1 (ENSCHYG00000009807) ENSCHYG00000009821 TAF9B (ENSCHYG00000010082) ENSCHYG00000010187 ENSCHYG00000010325 ENSCHYG00000010341 Percora_a ANCESTRAL SPECIES 22 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Siberian musk deer MODERN SPECIES 9 POF1B (ENSMMSG00000010335) #13 ZNF711 (ENSMMSG00000010430) #14 ENSMMSG00000010476 APOOL (ENSMMSG00000010528) #15 ENSMMSG00000010593 HDX (ENSMMSG00000010697) #18 ENSMMSG00000010779 ENSMMSG00000010807 RPS6KA6 (ENSMMSG00000010835) #19 CYLC1 (ENSMMSG00000010990) POU3F4 (ENSMMSG00000011014) #20 ENSMMSG00000011025 ENSMMSG00000011053 SH3BGRL (ENSMMSG00000011080) #21 HMGN5 (ENSMMSG00000000002) BRWD3 (ENSMMSG00000000027) #22 ENSMMSG00000000165 TENT5D (ENSMMSG00000000196) ENSMMSG00000000211 GPR174 (ENSMMSG00000000217) P2RY10 (ENSMMSG00000000233) LPAR4 (ENSMMSG00000000242) ENSMMSG00000000270 CYSLTR1 (ENSMMSG00000000289) ENSMMSG00000000301 TAF9B (ENSMMSG00000000384) ENSMMSG00000000413 ENSMMSG00000000439 ATP7A (ENSMMSG00000000479) ENSMMSG00000000541 MAGT1 (ENSMMSG00000000570) Bovidae ANCESTRAL SPECIES 23 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Caprinae ANCESTRAL SPECIES 52 ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.a.b ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00950000186410 ENSGT00940000160087 Rambouillet Sheep MODERN SPECIES 205 NHSL2 (ENSOARG00020025157) RTL5 (ENSOARG00020025206) PIN4 (ENSOARG00020025228) ERCC6L (ENSOARG00020025281) ENSOARG00020025291 CITED1 (ENSOARG00020025298) HDAC8 (ENSOARG00020025320) ENSOARG00020025389 PHKA1 (ENSOARG00020025431) ENSOARG00020025556 STAT4 (ENSOARG00020025579) STAT1 (ENSOARG00020025634) GLS (ENSOARG00020025702) ENSOARG00020025731 HMGN5 (ENSOARG00020015488) BRWD3 (ENSOARG00020015617) #22 TENT5D (ENSOARG00020016386) TBX22 (ENSOARG00020016413) ITM2A (ENSOARG00020016499) GPR174 (ENSOARG00020016533) ENSOARG00020016548 ENSOARG00020016579 P2RY10 (ENSOARG00020016610) LPAR4 (ENSOARG00020016628) CYSLTR1 (ENSOARG00020016671) TAF9B (ENSOARG00020016750) PGK1 (ENSOARG00020016769) ATP7A (ENSOARG00020016877) ENSOARG00020017092 ENSOARG00020017129 MAGT1 (ENSOARG00020017197) Goat MODERN SPECIES 29 ENSCHIG00000022286 SH3BGRL (ENSCHIG00000011349) #21 BRWD3 (ENSCHIG00000022090) #22 TENT5D (ENSCHIG00000019929) TBX22 (ENSCHIG00000016490) ENSCHIG00000022216 ITM2A (ENSCHIG00000000521) ENSCHIG00000020119 LPAR4 (ENSCHIG00000000602) P2RY10 (ENSCHIG00000002008) GPR174 (ENSCHIG00000003329) CYSLTR1 (ENSCHIG00000019948) ENSCHIG00000023794 ATRX (ENSCHIG00000013700) MAGT1 (ENSCHIG00000013861) ATP7A (ENSCHIG00000016420) ENSCHIG00000003253 ENSCHIG00000002486 Bovinae ANCESTRAL SPECIES 38 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00390000015224.c.a.a.b.f.a.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.b.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 Bos ANCESTRAL SPECIES 30 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT01030000235010.e.a ENSGT00940000159242 #19 ENSGT00920000150804 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00390000015224.c.a.a.b.f.a.b ENSGT01030000234518.D ENSGT00390000007560.k.b ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00390000009948.c.l ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.b.a ENSGT00390000012030.b.a Bos_a ANCESTRAL SPECIES 19 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT01030000235010.e.a ENSGT00940000159242 #19 ENSGT00920000150804 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00390000015224.c.a.a.a.t.a.b.a.a ENSGT01030000234518.D ENSGT00390000007560.k.b ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00390000009948.c.l ENSGT01100000263536.B.c.b ENSGT00550000074618.a.b.ab.a.a.a.a ENSGT00940000163592 ENSGT00940000161697 ENSGT00390000008820.e.b.kb ENSGT00940000159568 ENSGT00390000012178.g.b.b.a.b.a Wild yak MODERN SPECIES 2297 BRWD3 (ENSBMUG00000002257) #22 TENT5D (ENSBMUG00000002278) Domestic yak MODERN SPECIES 69 POF1B (ENSBGRG00000025068) #13 ZNF711 (ENSBGRG00000025171) #14 APOOL (ENSBGRG00000025225) #15 ENSBGRG00000025291 ENSBGRG00000025313 HDX (ENSBGRG00000025367) #18 ENSBGRG00000025377 RPS6KA6 (ENSBGRG00000012307) #19 CYLC1 (ENSBGRG00000013173) POU3F4 (ENSBGRG00000013340) #20 ENSBGRG00000013359 ENSBGRG00000013400 ENSBGRG00000013446 SH3BGRL (ENSBGRG00000013469) #21 ENSBGRG00000013533 BRWD3 (ENSBGRG00000013595) #22 TENT5D (ENSBGRG00000014080) TBX22 (ENSBGRG00000014109) ENSBGRG00000014224 ENSBGRG00000014249 GPR174 (ENSBGRG00000014278) P2RY10 (ENSBGRG00000014291) LPAR4 (ENSBGRG00000014316) ENSBGRG00000014334 CYSLTR1 (ENSBGRG00000014355) ENSBGRG00000014446 TAF9B (ENSBGRG00000014722) PGK1 (ENSBGRG00000014778) ATP7A (ENSBGRG00000015150) ENSBGRG00000015336 MAGT1 (ENSBGRG00000015408) Bos_b ANCESTRAL SPECIES 31 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00390000008591 #18 ENSGT01030000235010.e.a ENSGT00940000159242 #19 ENSGT00920000150804 ENSGT00730000111075.b ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000161206 ENSGT00390000015224.c.a.a.a.t.a.b.a.a ENSGT01030000234518.D ENSGT00390000007560.k.b Hybrid Bos Indicus MODERN SPECIES 315 ENSBIXG00005022499 APOOL (ENSBIXG00005022564) #15 ENSBIXG00005022647 HDX (ENSBIXG00005022875) #18 ENSBIXG00005022936 ENSBIXG00005005756 ENSBIXG00005022974 ENSBIXG00005022982 RPS6KA6 (ENSBIXG00005004019) #19 ENSBIXG00005023627 CYLC1 (ENSBIXG00005023648) POU3F4 (ENSBIXG00005023708) #20 ENSBIXG00005004073 SH3BGRL (ENSBIXG00005023836) #21 HMGN5 (ENSBIXG00005023866) BRWD3 (ENSBIXG00005023949) #22 TENT5D (ENSBIXG00005024005) TBX22 (ENSBIXG00005024042) ENSBIXG00005024094 GPR174 (ENSBIXG00005005599) ENSBIXG00005024140 P2RY10 (ENSBIXG00005024150) ENSBIXG00005024189 CYSLTR1 (ENSBIXG00005024205) ENSBIXG00005024230 ENSBIXG00005024310 TAF9B (ENSBIXG00005024355) PGK1 (ENSBIXG00005024390) ATP7A (ENSBIXG00005024508) ENSBIXG00005024547 ENSBIXG00005004198 Cow DUPLICATION Cow MODERN SPECIES 177 APOOL (ENSBTAG00000021790) #15 ENSBTAG00000027867 HDX (ENSBTAG00000051806) #18 ENSBTAG00000055024 RPS6KA6 (ENSBTAG00000002015) #19 ENSBTAG00000048589 CYLC1 (ENSBTAG00000047417) POU3F4 (ENSBTAG00000015712) #20 ENSBTAG00000039066 ENSBTAG00000051658 ENSBTAG00000048206 SH3BGRL (ENSBTAG00000010587) #21 ENSBTAG00000049971 HMGN5 (ENSBTAG00000001877) ENSBTAG00000051240 #22 BRWD3 (ENSBTAG00000016230) #22 TENT5D (ENSBTAG00000045653) TBX22 (ENSBTAG00000048060) ENSBTAG00000045678 GPR174 (ENSBTAG00000021437) ENSBTAG00000054002 ENSBTAG00000050883 P2RY10 (ENSBTAG00000008555) LPAR4 (ENSBTAG00000003299) ENSBTAG00000035882 CYSLTR1 (ENSBTAG00000024675) ENSBTAG00000051877 ENSBTAG00000026025 TAF9B (ENSBTAG00000000895) PGK1 (ENSBTAG00000000894) ATP7A (ENSBTAG00000010018) Cow MODERN SPECIES 177 ENSBTAG00000013077 APOOL (ENSBTAG00000021790) #15 ENSBTAG00000027867 HDX (ENSBTAG00000051806) #18 ENSBTAG00000055024 RPS6KA6 (ENSBTAG00000002015) #19 ENSBTAG00000048589 CYLC1 (ENSBTAG00000047417) POU3F4 (ENSBTAG00000015712) #20 ENSBTAG00000039066 ENSBTAG00000051658 ENSBTAG00000048206 SH3BGRL (ENSBTAG00000010587) #21 ENSBTAG00000049971 HMGN5 (ENSBTAG00000001877) ENSBTAG00000051240 #22 BRWD3 (ENSBTAG00000016230) #22 TENT5D (ENSBTAG00000045653) TBX22 (ENSBTAG00000048060) ENSBTAG00000045678 GPR174 (ENSBTAG00000021437) ENSBTAG00000054002 ENSBTAG00000050883 P2RY10 (ENSBTAG00000008555) LPAR4 (ENSBTAG00000003299) ENSBTAG00000035882 CYSLTR1 (ENSBTAG00000024675) ENSBTAG00000051877 ENSBTAG00000026025 TAF9B (ENSBTAG00000000895) PGK1 (ENSBTAG00000000894) Cetacea ANCESTRAL SPECIES 19 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.a.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000159568 ENSGT00390000012178.g.b.a.a ENSGT00390000012030.b.a ENSGT00940000155902 Odontoceti ANCESTRAL SPECIES 19 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.a.a #15 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000164489 ENSGT00940000159568 ENSGT00980000203089 ENSGT00390000012178.g.b.a.a Odontoceti_a ANCESTRAL SPECIES 28 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.a.a #15 ENSGT00390000008591 #18 ENSGT00390000005534.b.b.d ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000164489 ENSGT00940000159568 ENSGT00980000203089 ENSGT00390000012178.g.b.a.a Odontoceti_b ANCESTRAL SPECIES 17 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.a.a #15 ENSGT00390000008591 #18 ENSGT00390000005534.b.b.d ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00390000002517.a.a.c.b ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000164489 ENSGT01090000260912.A ENSGT00940000159568 ENSGT00980000203089 Monodontidae ANCESTRAL SPECIES 19 ENSGT00390000001134.b #9 ENSGT00950000182994.A.n.a #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a.a.a #15 ENSGT00390000008591 #18 ENSGT00390000005534.b.b.d ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT01010000229653 ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01030000234518.D ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT00940000163808 ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000164489 ENSGT01090000260912.A ENSGT00940000159568 ENSGT00390000012178.g.b.a.a Beluga whale MODERN SPECIES 15 CHM (ENSDLEG00000000210) #11 POF1B (ENSDLEG00000000273) #13 ENSDLEG00000000305 ZNF711 (ENSDLEG00000000338) #14 ENSDLEG00000000411 #15 ENSDLEG00000000533 HDX (ENSDLEG00000000563) #18 RPS6KA6 (ENSDLEG00000000947) #19 ENSDLEG00000002260 POU3F4 (ENSDLEG00000002267) #20 ENSDLEG00000002271 ENSDLEG00000002284 SH3BGRL (ENSDLEG00000002296) #21 ENSDLEG00000002316 ENSDLEG00000002320 BRWD3 (ENSDLEG00000002333) #22 ENSDLEG00000002366 FAM46D (ENSDLEG00000002371) ENSDLEG00000002378 TBX22 (ENSDLEG00000002390) ITM2A (ENSDLEG00000002408) GPR174 (ENSDLEG00000002420) ENSDLEG00000002427 P2RY10 (ENSDLEG00000002430) LPAR4 (ENSDLEG00000002433) RTL3 (ENSDLEG00000002439) TAF9B (ENSDLEG00000002449) PGK1 (ENSDLEG00000002462) ENSDLEG00000002472 ENSDLEG00000002475 ATP7A (ENSDLEG00000002484) Narwhal MODERN SPECIES 309 ENSMMNG00015009712 ENSMMNG00015009704 #15 ENSMMNG00015009686 HDX (ENSMMNG00015009669) #18 ENSMMNG00015009659 RPS6KA6 (ENSMMNG00015009638) #19 ENSMMNG00015009625 ENSMMNG00015009619 ENSMMNG00015009610 SH3BGRL (ENSMMNG00015009604) #21 ENSMMNG00015009599 HMGN5 (ENSMMNG00015009591) ENSMMNG00015009582 ENSMMNG00015009579 ENSMMNG00015009577 BRWD3 (ENSMMNG00015009554) #22 TENT5D (ENSMMNG00015009540) ENSMMNG00015009536 TBX22 (ENSMMNG00015009523) ENSMMNG00015009510 ITM2A (ENSMMNG00015009496) ENSMMNG00015009482 P2RY10 (ENSMMNG00015009475) LPAR4 (ENSMMNG00015009468) RTL3 (ENSMMNG00015009461) TAF9B (ENSMMNG00015009451) PGK1 (ENSMMNG00015009442) ENSMMNG00015009432 ATP7A (ENSMMNG00015009419) ENSMMNG00015009397 MAGT1 (ENSMMNG00015009385) Vaquita MODERN SPECIES 34 CHM (ENSPSNG00000016502) #11 ENSPSNG00000016452 POF1B (ENSPSNG00000016065) #13 ZNF711 (ENSPSNG00000015952) #14 ENSPSNG00000015761 ENSPSNG00000015676 APOOL (ENSPSNG00000015621) #15 HDX (ENSPSNG00000015468) #18 RPS6KA6 (ENSPSNG00000014893) #19 POU3F4 (ENSPSNG00000014834) #20 ENSPSNG00000014813 SH3BGRL (ENSPSNG00000014759) #21 ENSPSNG00000014737 ENSPSNG00000014508 ENSPSNG00000014459 BRWD3 (ENSPSNG00000014395) #22 TENT5D (ENSPSNG00000014369) TBX22 (ENSPSNG00000014253) ITM2A (ENSPSNG00000014072) GPR174 (ENSPSNG00000014042) ENSPSNG00000013978 P2RY10 (ENSPSNG00000013950) LPAR4 (ENSPSNG00000013916) RTL3 (ENSPSNG00000013887) TAF9B (ENSPSNG00000013833) PGK1 (ENSPSNG00000013773) ENSPSNG00000013679 ENSPSNG00000013610 ATP7A (ENSPSNG00000013495) ENSPSNG00000021803 ENSPSNG00000021781 Dolphin MODERN SPECIES 1587 BRWD3 (ENSTTRG00000008954) #22 Sperm whale MODERN SPECIES 13 ZNF711 (ENSPCTG00005018257) #14 ENSPCTG00005018213 ENSPCTG00005018126 APOOL (ENSPCTG00005018097) #15 ENSPCTG00005018057 ENSPCTG00005018003 HDX (ENSPCTG00005017842) #18 RPS6KA6 (ENSPCTG00005017401) #19 POU3F4 (ENSPCTG00005017365) #20 ENSPCTG00005017351 ENSPCTG00005017342 ENSPCTG00005017278 SH3BGRL (ENSPCTG00005017239) #21 ENSPCTG00005017210 HMGN5 (ENSPCTG00005017184) BRWD3 (ENSPCTG00005016926) #22 TENT5D (ENSPCTG00005016891) ENSPCTG00005016832 ENSPCTG00005016800 TBX22 (ENSPCTG00005016705) ITM2A (ENSPCTG00005016548) GPR174 (ENSPCTG00005016529) ENSPCTG00005016517 P2RY10 (ENSPCTG00005016500) LPAR4 (ENSPCTG00005016476) TAF9B (ENSPCTG00005016200) PGK1 (ENSPCTG00005016156) ENSPCTG00005016116 ATP7A (ENSPCTG00005016014) ENSPCTG00005015993 ENSPCTG00005015887 Blue whale MODERN SPECIES 40 DACH2 (ENSBMSG00010017134) #9 ENSBMSG00010017064 #11 ENSBMSG00010017049 ZNF711 (ENSBMSG00010016976) #14 ENSBMSG00010016944 APOOL (ENSBMSG00010016918) #15 ENSBMSG00010016890 HDX (ENSBMSG00010016834) #18 ENSBMSG00010016817 RPS6KA6 (ENSBMSG00010016590) #19 POU3F4 (ENSBMSG00010016551) #20 ENSBMSG00010016538 ENSBMSG00010016527 SH3BGRL (ENSBMSG00010016502) #21 ENSBMSG00010016435 ENSBMSG00010016407 #22 ENSBMSG00010016362 TBX22 (ENSBMSG00010016318) ITM2A (ENSBMSG00010016249) GPR174 (ENSBMSG00010016108) LPAR4 (ENSBMSG00010021050) TAF9B (ENSBMSG00010021035) PGK1 (ENSBMSG00010021023) ENSBMSG00010021016 ATP7A (ENSBMSG00010020999) ENSBMSG00010020983 MAGT1 (ENSBMSG00010020956) ATRX (ENSBMSG00010020930) FGF16 (ENSBMSG00010020906) PBDC1 (ENSBMSG00010020886) MAGEE2 (ENSBMSG00010020865) Eulipotyphla ANCESTRAL SPECIES ENSGT00950000183107.a.b.b #22 Hedgehog MODERN SPECIES 5944 BRWD3 (ENSEEUG00000015319) #22 Common shrew MODERN SPECIES 4620 BRWD3 (ENSSARG00000010796) #22 Atlantogenata ANCESTRAL SPECIES 61 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT01030000235438 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01000000215268 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.a.a ENSGT01030000234518.D ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g Xenarthra ANCESTRAL SPECIES 1900 ENSGT00950000183107.a.b.b #22 ENSGT01000000215268 Armadillo MODERN SPECIES 4184 ENSDNOG00000040467 FPGT (ENSDNOG00000049098) TNNI3K (ENSDNOG00000005238) ENSDNOG00000033011 ENSDNOG00000038593 ENSDNOG00000016614 TYW3 (ENSDNOG00000033863) BRWD3 (ENSDNOG00000009169) #22 ENSDNOG00000045095 Afrotheria ANCESTRAL SPECIES 71 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT01030000235438 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01000000215268 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g ENSGT00390000012030.b.a Tenrec MODERN SPECIES 5762 BRWD3 (ENSETEG00000004092) #22 Afrotheria_a ANCESTRAL SPECIES 70 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT01030000235438 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000156017 #21 ENSGT00730000111570 ENSGT00950000183107.a.b.b #22 ENSGT01000000215268 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000161697 ENSGT00390000008820.e.b ENSGT00940000163576 ENSGT00940000159568 ENSGT00390000012178.g ENSGT00390000012030.b.a Hyrax MODERN SPECIES 4878 ENSPCAG00000015671 #22 Elephant MODERN SPECIES 251 CHM (ENSLAFG00000000523) #11 POF1B (ENSLAFG00000009185) #13 ZNF711 (ENSLAFG00000008864) #14 ENSLAFG00000002972 APOOL (ENSLAFG00000008844) #15 ENSLAFG00000028905 #16 ENSLAFG00000032687 ENSLAFG00000031687 HDX (ENSLAFG00000028655) #18 RPS6KA6 (ENSLAFG00000007777) #19 ENSLAFG00000027489 POU3F4 (ENSLAFG00000015688) #20 ENSLAFG00000026530 SH3BGRL (ENSLAFG00000011746) #21 ENSLAFG00000017956 BRWD3 (ENSLAFG00000002711) #22 ENSLAFG00000032363 TENT5D (ENSLAFG00000027086) ENSLAFG00000026457 TBX22 (ENSLAFG00000001881) ITM2A (ENSLAFG00000009973) ENSLAFG00000025887 P2RY10 (ENSLAFG00000017615) LPAR4 (ENSLAFG00000008857) CYSLTR1 (ENSLAFG00000022602) TAF9B (ENSLAFG00000011956) PGK1 (ENSLAFG00000011954) ENSLAFG00000025903 ATP7A (ENSLAFG00000020866) COX7B (ENSLAFG00000022996) MAGT1 (ENSLAFG00000012886) Marsupialia ANCESTRAL SPECIES 36 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00940000163653.b ENSGT00530000064086.q ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b.uc ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097.a ENSGT00390000008820.e.a ENSGT00950000183593 ENSGT00940000159568 Marsupialia_b ANCESTRAL SPECIES 32 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00940000163653.b ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00530000064086.q ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00730000111075 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b.uc ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097.a ENSGT00390000008820.e.a ENSGT00940000163576 ENSGT00940000159568 Diprotodontia ANCESTRAL SPECIES 72 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00940000163653.b ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00530000064086.q ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b.uc ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097.a ENSGT00390000008820.e.a ENSGT00940000163576 ENSGT00940000159568 Diprotodontia_a ANCESTRAL SPECIES 69 ENSGT00940000157978.g ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00940000163653.b ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00530000064086.q ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b.uc ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.a ENSGT01100000263536.A.a.a.b ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097.a ENSGT00390000008820.e.a.g ENSGT00940000163576 ENSGT00940000159568 koala MODERN SPECIES 153 ENSPCIG00000002575 #11 ENSPCIG00000034179 POF1B (ENSPCIG00000002558) #13 ZNF711 (ENSPCIG00000002535) #14 ENSPCIG00000002492 ENSPCIG00000032809 ENSPCIG00000002457 ENSPCIG00000036766 ENSPCIG00000011754 HDX (ENSPCIG00000018657) #18 RPS6KA6 (ENSPCIG00000018480) #19 POU3F4 (ENSPCIG00000018483) #20 ENSPCIG00000034797 ENSPCIG00000021957 SH3BGRL (ENSPCIG00000021959) #21 BRWD3 (ENSPCIG00000021973) #22 TENT5D (ENSPCIG00000007683) ENSPCIG00000007686 TBX22 (ENSPCIG00000007687) ITM2A (ENSPCIG00000007691) ENSPCIG00000007693 ENSPCIG00000007694 P2RY10 (ENSPCIG00000007695) LPAR4 (ENSPCIG00000036415) ENSPCIG00000007698 CYSLTR1 (ENSPCIG00000028506) ENSPCIG00000026996 ENSPCIG00000026916 ENSPCIG00000026908 ENSPCIG00000026914 ATP7A (ENSPCIG00000026898) Common wonbat MODERN SPECIES 256 ZNF711 (ENSVURG00010013096) #14 ENSVURG00010013087 ENSVURG00010013055 APOOL (ENSVURG00010013044) #15 ENSVURG00010013030 ENSVURG00010013025 ENSVURG00010013008 HDX (ENSVURG00010012997) #18 RPS6KA6 (ENSVURG00010012986) #19 POU3F4 (ENSVURG00010012952) #20 ENSVURG00010012946 ENSVURG00010012938 ENSVURG00010012935 SH3BGRL (ENSVURG00010012931) #21 ENSVURG00010012917 BRWD3 (ENSVURG00010010949) #22 ENSVURG00010010850 TENT5D (ENSVURG00010010847) ENSVURG00010010827 TBX22 (ENSVURG00010010806) ENSVURG00010010796 ITM2A (ENSVURG00010010753) ENSVURG00010010742 ENSVURG00010010739 P2RY10 (ENSVURG00010010733) LPAR4 (ENSVURG00010010729) ENSVURG00010010723 CYSLTR1 (ENSVURG00010010720) ENSVURG00010006043 ENSVURG00010005813 ENSVURG00010005765 Wallaby MODERN SPECIES 7174 BRWD3 (ENSMEUG00000013907) #22 Tasmanian devil MODERN SPECIES 21 ZNF711 (ENSSHAG00000017110) #14 ENSSHAG00000021606 ENSSHAG00000030190 ENSSHAG00000016737 #15 ENSSHAG00000030965 ENSSHAG00000015306 ENSSHAG00000029424 HDX (ENSSHAG00000014376) #18 RPS6KA6 (ENSSHAG00000013276) #19 ENSSHAG00000013212 POU3F4 (ENSSHAG00000028260) #20 ENSSHAG00000024526 ENSSHAG00000007416 ENSSHAG00000026737 ENSSHAG00000006740 #21 BRWD3 (ENSSHAG00000017788) #22 TENT5D (ENSSHAG00000030992) ENSSHAG00000016903 TBX22 (ENSSHAG00000031949) ITM2A (ENSSHAG00000023986) GPR174 (ENSSHAG00000020632) ENSSHAG00000023574 P2RY10 (ENSSHAG00000028613) ENSSHAG00000026487 ENSSHAG00000014281 CYSLTR1 (ENSSHAG00000013758) ENSSHAG00000013267 ENSSHAG00000023354 ENSSHAG00000001853 ENSSHAG00000022184 ENSSHAG00000012787 Opossum MODERN SPECIES 627 ENSMODG00000017486 ENSMODG00000025187 ENSMODG00000049110 ENSMODG00000017482 ENSMODG00000017480 ENSMODG00000025190 ENSMODG00000017473 ENSMODG00000044797 ENSMODG00000029644 ENSMODG00000017465 ENSMODG00000025192 ENSMODG00000017423 ENSMODG00000027595 ENSMODG00000022861 SH3BGRL (ENSMODG00000004322) #21 BRWD3 (ENSMODG00000004308) #22 ENSMODG00000014584 ENSMODG00000004273 TBX22 (ENSMODG00000004255) ENSMODG00000043255 ENSMODG00000043149 ENSMODG00000004233 GPR174 (ENSMODG00000022863) ENSMODG00000004214 LPAR4 (ENSMODG00000022866) ENSMODG00000045736 CYSLTR1 (ENSMODG00000004207) ENSMODG00000004142 ENSMODG00000004077 ENSMODG00000004055 ENSMODG00000028942 Platypus MODERN SPECIES 17 ENSOANG00000041968 #8 ENSOANG00000008969 #8 ENSOANG00000004328 #9 CHM (ENSOANG00000007635) #11 POF1B (ENSOANG00000039584) #13 ZNF711 (ENSOANG00000047231) #14 ENSOANG00000040338 ENSOANG00000007647 APOOL (ENSOANG00000048854) #15 ENSOANG00000041721 HDX (ENSOANG00000041527) #18 RPS6KA6 (ENSOANG00000005406) #19 POU3F4 (ENSOANG00000002241) #20 ENSOANG00000040877 ENSOANG00000040557 #21 BRWD3 (ENSOANG00000043415) #22 ENSOANG00000051162 CHMP1B (ENSOANG00000022451) TBX22 (ENSOANG00000040270) ITM2A (ENSOANG00000007068) GPR174 (ENSOANG00000046748) ENSOANG00000040101 ENSOANG00000038812 LPAR4 (ENSOANG00000040303) CYSLTR1 (ENSOANG00000047424) ENSOANG00000011910 ENSOANG00000042180 ENSOANG00000046779 LRCH2 (ENSOANG00000007419) ENSOANG00000042091 ENSOANG00000012718 Sauria ANCESTRAL SPECIES 21 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Lepidosauria ANCESTRAL SPECIES 41 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b tuatara DUPLICATION tuatara MODERN SPECIES 1879 ENSSPUG00000007774 SH3BGRL (ENSSPUG00000007763) #21 ENSSPUG00000007757 ENSSPUG00000007742 #22 ENSSPUG00000007695 #22 ENSSPUG00000007683 tuatara MODERN SPECIES 1879 ENSSPUG00000007774 SH3BGRL (ENSSPUG00000007763) #21 ENSSPUG00000007757 ENSSPUG00000007742 #22 ENSSPUG00000007695 #22 ENSSPUG00000007683 Episquamata ANCESTRAL SPECIES 14 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237.`b ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00940000156837.w ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000157424 ENSGT00510000047611 Laterata ANCESTRAL SPECIES 31 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237.`b ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00960000189950 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00940000156837.w ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000157424 ENSGT00510000047611 Argentine black and white tegu MODERN SPECIES 75 ENSSMRG00000008459 #11 POF1B (ENSSMRG00000008469) #13 ZNF711 (ENSSMRG00000008476) #14 ENSSMRG00000008481 APOOL (ENSSMRG00000008484) #15 ENSSMRG00000008499 ENSSMRG00000008508 HDX (ENSSMRG00000008512) #18 RPS6KA6 (ENSSMRG00000008523) #19 POU3F4 (ENSSMRG00000008536) #20 ENSSMRG00000008539 ENSSMRG00000008541 ENSSMRG00000008543 SH3BGRL (ENSSMRG00000008544) #21 ENSSMRG00000008553 BRWD3 (ENSSMRG00000008563) #22 ENSSMRG00000009214 TENT5D (ENSSMRG00000009218) ENSSMRG00000009220 CHMP1B (ENSSMRG00000009221) TBX22 (ENSSMRG00000009224) ITM2A (ENSSMRG00000009226) ENSSMRG00000009227 ENSSMRG00000009228 ENSSMRG00000009229 LPAR4 (ENSSMRG00000009231) ENSSMRG00000009232 ENSSMRG00000009234 ENSSMRG00000009235 ENSSMRG00000009243 RAB41 (ENSSMRG00000009244) Common wall lizard MODERN SPECIES 419 APOOL (ENSPMRG00000020173) #15 ENSPMRG00000020137 HDX (ENSPMRG00000020114) #18 ENSPMRG00000020105 RPS6KA6 (ENSPMRG00000019568) #19 POU3F4 (ENSPMRG00000019451) #20 ENSPMRG00000019446 ENSPMRG00000019435 ENSPMRG00000019426 ENSPMRG00000019420 ENSPMRG00000019416 ENSPMRG00000019404 SH3BGRL (ENSPMRG00000019393) #21 ENSPMRG00000019385 ENSPMRG00000019373 BRWD3 (ENSPMRG00000019228) #22 ENSPMRG00000019214 TENT5D (ENSPMRG00000019209) ENSPMRG00000019205 ENSPMRG00000019198 ENSPMRG00000019188 TBX22 (ENSPMRG00000019179) ITM2A (ENSPMRG00000019174) ENSPMRG00000019169 ENSPMRG00000019160 ENSPMRG00000019156 LPAR4 (ENSPMRG00000020204) CYSLTR1 (ENSPMRG00000020201) ENSPMRG00000020178 ENSPMRG00000020171 ENSPMRG00000020166 Toxicofera ANCESTRAL SPECIES 17 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237.ab ENSGT00940000164237.`b ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00940000156837.w ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT00990000203619.B ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00510000047611 ENSGT00940000163684 Elapidae ANCESTRAL SPECIES 14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237.ab ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.a ##22 ENSGT00950000185720 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00940000156837.w ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT00990000203619.B ENSGT00940000163592 ENSGT00510000047611 ENSGT00940000163684 ENSGT01030000234566.e.b.b.b Elapidae_a ANCESTRAL SPECIES 30 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00990000205517 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237.`b ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00960000189950 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00940000156837.w ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT00990000203619.B ENSGT00940000163592 ENSGT00510000047611 ENSGT00940000163684 ENSGT01030000234566.e.b.b.b Acanthophiinae ANCESTRAL SPECIES 20 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00990000205517 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237.`b ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00940000156837.w ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT00990000203619.B ENSGT00940000163592 ENSGT00510000047611 ENSGT01030000234566.e.b.b.b ENSGT00940000157297.i Mainland tiger snake MODERN SPECIES 64 ENSNSUG00000020637 #11 POF1B (ENSNSUG00000020636) #13 ZNF711 (ENSNSUG00000020635) #14 ENSNSUG00000020634 ENSNSUG00000020633 ENSNSUG00000020631 HDX (ENSNSUG00000020630) #18 RPS6KA6 (ENSNSUG00000020629) #19 POU3F4 (ENSNSUG00000020628) #20 ENSNSUG00000020627 ENSNSUG00000020626 ENSNSUG00000020625 ENSNSUG00000020624 SH3BGRL (ENSNSUG00000020623) #21 ENSNSUG00000020622 BRWD3 (ENSNSUG00000020621) #22 ENSNSUG00000020620 TENT5D (ENSNSUG00000020619) ERCC6L (ENSNSUG00000020618) TBX22 (ENSNSUG00000020617) ITM2A (ENSNSUG00000020616) ENSNSUG00000020615 ENSNSUG00000020614 ENSNSUG00000020613 LPAR4 (ENSNSUG00000020612) ENSNSUG00000020611 ENSNSUG00000020610 ENSNSUG00000020609 ENSNSUG00000020608 TENM1 (ENSNSUG00000020607) ENSNSUG00000020606 Eastern brown snake MODERN SPECIES 20 ENSPTXG00000004640 #11 POF1B (ENSPTXG00000004728) #13 ZNF711 (ENSPTXG00000004741) #14 ENSPTXG00000004745 APOOL (ENSPTXG00000004749) #15 ENSPTXG00000004751 ENSPTXG00000004753 HDX (ENSPTXG00000004754) #18 RPS6KA6 (ENSPTXG00000004755) #19 ENSPTXG00000004757 ENSPTXG00000004758 ENSPTXG00000004760 ENSPTXG00000004761 SH3BGRL (ENSPTXG00000004762) #21 ENSPTXG00000004763 BRWD3 (ENSPTXG00000004804) #22 ENSPTXG00000004968 TENT5D (ENSPTXG00000004972) ENSPTXG00000004973 CHMP1B (ENSPTXG00000004975) ITM2A (ENSPTXG00000004976) ENSPTXG00000004977 ENSPTXG00000004978 LPAR4 (ENSPTXG00000004980) ENSPTXG00000004981 ENSPTXG00000004988 ENSPTXG00000007751 ENSPTXG00000007752 TENM1 (ENSPTXG00000007753) ENSPTXG00000007759 ENSPTXG00000008851 Blue-lipped sea krait MODERN SPECIES 5372 BRWD3 (ENSLLTG00000004876) #22 Indian cobra MODERN SPECIES 13 ZNF711 (ENSNNAG00000010263) #14 ENSNNAG00000010213 ENSNNAG00000010176 APOOL (ENSNNAG00000010158) #15 ENSNNAG00000018865 HDX (ENSNNAG00000018861) #18 RPS6KA6 (ENSNNAG00000018764) #19 ENSNNAG00000018731 #20 ENSNNAG00000018723 #20 ENSNNAG00000018717 ENSNNAG00000018713 ENSNNAG00000018709 ENSNNAG00000018705 ENSNNAG00000018703 SH3BGRL (ENSNNAG00000018699) #21 BRWD3 (ENSNNAG00000018367) #22 ENSNNAG00000018272 ENSNNAG00000018270 ENSNNAG00000018269 TENT5D (ENSNNAG00000018267) ENSNNAG00000018260 ENSNNAG00000018257 CHMP1B (ENSNNAG00000018251) TBX22 (ENSNNAG00000018243) ITM2A (ENSNNAG00000018239) ENSNNAG00000018238 ENSNNAG00000018236 ENSNNAG00000018232 LPAR4 (ENSNNAG00000018229) ENSNNAG00000018225 ENSNNAG00000017641 Lizard MODERN SPECIES 1422 ENSACAG00000008361 #22 ENSACAG00000026082 ENSACAG00000011230 Archelosauria ANCESTRAL SPECIES 24 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Archosauria ANCESTRAL SPECIES 15 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT01040000244695 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Aves ANCESTRAL SPECIES 23 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT01040000244695 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 African ostrich MODERN SPECIES 1060 TAF7 (ENSSCUG00000019126) ENSSCUG00000019125 BTK (ENSSCUG00000019124) ENSSCUG00000019123 GLA (ENSSCUG00000019122) RAB9B (ENSSCUG00000019121) ENSSCUG00000019120 ENSSCUG00000019119 FRMPD3 (ENSSCUG00000019118) RPS6KA6 (ENSSCUG00000019117) #19 ENSSCUG00000019115 #20 ENSSCUG00000019111 ENSSCUG00000019110 ENSSCUG00000019108 SH3BGRL (ENSSCUG00000019106) #21 BRWD3 (ENSSCUG00000019103) #22 ENSSCUG00000019102 TENT5D (ENSSCUG00000019101) CHMP1B (ENSSCUG00000019100) ITM2A (ENSSCUG00000019099) ENSSCUG00000019097 ENSSCUG00000019095 ENSSCUG00000019094 LPAR4 (ENSSCUG00000019093) ENSSCUG00000019092 CYSLTR1 (ENSSCUG00000019090) ENSSCUG00000019088 ENSSCUG00000019087 TAF9 (ENSSCUG00000019086) KIF4A (ENSSCUG00000019085) PDZD11 (ENSSCUG00000019084) Neognathae ANCESTRAL SPECIES 22 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT01040000244695 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Neognathae_b ANCESTRAL SPECIES ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT01040000244695 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Passeriformes ANCESTRAL SPECIES 24 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT01040000244695 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b Great tit MODERN SPECIES 24 ENSPMJG00000004500 KLHL4 (ENSPMJG00000004550) #8 DACH2 (ENSPMJG00000004572) #9 ENSPMJG00000004621 #11 POF1B (ENSPMJG00000004629) #13 ZNF711 (ENSPMJG00000004632) #14 ENSPMJG00000004635 APOOL (ENSPMJG00000004639) #15 ENSPMJG00000004654 HDX (ENSPMJG00000004669) #18 RPS6KA6 (ENSPMJG00000004676) #19 ENSPMJG00000004715 ENSPMJG00000004717 ENSPMJG00000004731 SH3BGRL (ENSPMJG00000004732) #21 BRWD3 (ENSPMJG00000004797) #22 ENSPMJG00000007839 TENT5D (ENSPMJG00000007841) CHMP1B (ENSPMJG00000007843) TBX22 (ENSPMJG00000007845) ITM2A (ENSPMJG00000007846) ENSPMJG00000007847 ENSPMJG00000007848 ENSPMJG00000007849 LPAR4 (ENSPMJG00000007890) ENSPMJG00000007891 CYSLTR1 (ENSPMJG00000007892) ENSPMJG00000007893 TAF9 (ENSPMJG00000007895) KIF4A (ENSPMJG00000007896) PDZD11 (ENSPMJG00000007900) Passeriformes_d ANCESTRAL SPECIES 27 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT01040000244695 ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c.b ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b Flycatcher MODERN SPECIES 23 DACH2 (ENSFALG00000003987) #9 ENSFALG00000003994 #11 ZNF711 (ENSFALG00000004005) #14 ENSFALG00000023605 APOOL (ENSFALG00000028762) #15 ENSFALG00000004029 HDX (ENSFALG00000004050) #18 RPS6KA6 (ENSFALG00000004051) #19 POU3F4 (ENSFALG00000028949) #20 ENSFALG00000027532 ENSFALG00000004060 ENSFALG00000014855 SH3BGRL (ENSFALG00000026799) #21 ENSFALG00000004069 ENSFALG00000026282 BRWD3 (ENSFALG00000004071) #22 TENT5D (ENSFALG00000014872) ENSFALG00000026579 ENSFALG00000024560 TBX22 (ENSFALG00000004082) ITM2A (ENSFALG00000004086) ENSFALG00000014887 ENSFALG00000014911 ENSFALG00000028860 LPAR4 (ENSFALG00000014923) ENSFALG00000004092 CYSLTR1 (ENSFALG00000014944) ENSFALG00000004101 ENSFALG00000004104 ENSFALG00000025082 ENSFALG00000004108 Passeriformes_g ANCESTRAL SPECIES 28 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c.b ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b Medium ground finch MODERN SPECIES 52 ENSGFOG00000012864 KLHL4 (ENSGFOG00000012871) #8 DACH2 (ENSGFOG00000012878) #9 ENSGFOG00000012883 #11 ZNF711 (ENSGFOG00000012889) #14 ENSGFOG00000012892 APOOL (ENSGFOG00000012895) #15 ENSGFOG00000012899 HDX (ENSGFOG00000012900) #18 RPS6KA6 (ENSGFOG00000012903) #19 ENSGFOG00000012906 ENSGFOG00000012907 ENSGFOG00000012909 SH3BGRL (ENSGFOG00000012912) #21 ENSGFOG00000012914 BRWD3 (ENSGFOG00000012945) #22 TENT5D (ENSGFOG00000013151) CHMP1B (ENSGFOG00000013153) ITM2A (ENSGFOG00000013161) ENSGFOG00000000009 ENSGFOG00000000021 ENSGFOG00000000038 LPAR4 (ENSGFOG00000000040) ENSGFOG00000000156 CYSLTR1 (ENSGFOG00000000160) ENSGFOG00000000169 TAF9 (ENSGFOG00000000188) KIF4A (ENSGFOG00000000195) ENSGFOG00000000221 RAB41 (ENSGFOG00000000245) ARR3 (ENSGFOG00000000256) Passeroidea ANCESTRAL SPECIES 30 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c.b ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b Common canary MODERN SPECIES 13 DACH2 (ENSSCAG00000002926) #9 ENSSCAG00000002831 #11 POF1B (ENSSCAG00000002819) #13 ZNF711 (ENSSCAG00000002807) #14 ENSSCAG00000002804 APOOL (ENSSCAG00000002799) #15 ENSSCAG00000002792 ENSSCAG00000002788 ENSSCAG00000002778 HDX (ENSSCAG00000002764) #18 RPS6KA6 (ENSSCAG00000002754) #19 ENSSCAG00000002744 ENSSCAG00000002734 ENSSCAG00000002728 SH3BGRL (ENSSCAG00000002723) #21 BRWD3 (ENSSCAG00000002422) #22 TENT5D (ENSSCAG00000002314) CHMP1B (ENSSCAG00000002307) TBX22 (ENSSCAG00000002292) ITM2A (ENSSCAG00000002281) ENSSCAG00000002271 ENSSCAG00000002265 ENSSCAG00000002260 LPAR4 (ENSSCAG00000002256) ENSSCAG00000002255 CYSLTR1 (ENSSCAG00000002248) ENSSCAG00000001501 TAF9 (ENSSCAG00000001200) KIF4A (ENSSCAG00000000955) PDZD11 (ENSSCAG00000000880) RAB41 (ENSSCAG00000000872) Zebra finch MODERN SPECIES 26 KLHL4 (ENSTGUG00000002398) #8 DACH2 (ENSTGUG00000002423) #9 ENSTGUG00000002437 #11 POF1B (ENSTGUG00000002455) #13 ZNF711 (ENSTGUG00000002466) #14 APOOL (ENSTGUG00000002477) #15 ENSTGUG00000002481 HDX (ENSTGUG00000002499) #18 RPS6KA6 (ENSTGUG00000002510) #19 POU3F4 (ENSTGUG00000029753) #20 ENSTGUG00000002530 ENSTGUG00000002535 ENSTGUG00000002549 SH3BGRL (ENSTGUG00000025391) #21 HMGN5 (ENSTGUG00000002555) BRWD3 (ENSTGUG00000002561) #22 ENSTGUG00000023809 TENT5D (ENSTGUG00000022810) CHMP1B (ENSTGUG00000027356) TBX22 (ENSTGUG00000002573) ITM2A (ENSTGUG00000002582) ENSTGUG00000026061 ENSTGUG00000018371 ENSTGUG00000018478 LPAR4 (ENSTGUG00000021204) ENSTGUG00000021806 CYSLTR1 (ENSTGUG00000024102) ENSTGUG00000002593 TAF9 (ENSTGUG00000002603) KIF4A (ENSTGUG00000002605) PDZD11 (ENSTGUG00000002616) Neognathae_c ANCESTRAL SPECIES 29 ENSGT00940000159818 #8 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Kakapo MODERN SPECIES 1 NXT2 (ENSSHBG00005008272) IRS4 (ENSSHBG00005008280) ENSSHBG00005008284 APOOL (ENSSHBG00005008299) #15 ENSSHBG00005008326 ENSSHBG00005008338 ENSSHBG00005000577 HDX (ENSSHBG00005000581) #18 RPS6KA6 (ENSSHBG00005000605) #19 POU3F4 (ENSSHBG00005000627) #20 ENSSHBG00005000632 ENSSHBG00005000633 ENSSHBG00005000635 SH3BGRL (ENSSHBG00005000636) #21 ENSSHBG00005015209 BRWD3 (ENSSHBG00005015285) #22 ENSSHBG00005015777 TENT5D (ENSSHBG00005015785) CHMP1B (ENSSHBG00005015790) TBX22 (ENSSHBG00005015797) ITM2A (ENSSHBG00005015802) ENSSHBG00005015808 ENSSHBG00005015812 ENSSHBG00005015815 LPAR4 (ENSSHBG00005015821) ENSSHBG00005015823 CYSLTR1 (ENSSHBG00005015827) ENSSHBG00005015829 TAF9 (ENSSHBG00005015836) KIF4A (ENSSHBG00005015849) PDZD11 (ENSSHBG00005015864) Golden eagle MODERN SPECIES 13 DACH2 (ENSACCG00020016193) #9 ENSACCG00020016178 #11 POF1B (ENSACCG00020016158) #13 ZNF711 (ENSACCG00020016132) #14 ENSACCG00020016121 APOOL (ENSACCG00020016100) #15 ENSACCG00020016085 ENSACCG00020016065 HDX (ENSACCG00020016050) #18 RPS6KA6 (ENSACCG00020015923) #19 POU3F4 (ENSACCG00020015685) #20 ENSACCG00020015673 ENSACCG00020015657 ENSACCG00020015649 SH3BGRL (ENSACCG00020015632) #21 BRWD3 (ENSACCG00020014046) #22 TENT5D (ENSACCG00020012234) CHMP1B (ENSACCG00020012203) TBX22 (ENSACCG00020012178) ITM2A (ENSACCG00020012142) ENSACCG00020012123 ENSACCG00020012110 ENSACCG00020012089 LPAR4 (ENSACCG00020012064) ENSACCG00020012035 CYSLTR1 (ENSACCG00020012023) ENSACCG00020011979 ENSACCG00020011916 TAF9 (ENSACCG00020011894) KIF4A (ENSACCG00020011701) PDZD11 (ENSACCG00020011488) Galloanserae ANCESTRAL SPECIES 21 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b ENSGT00940000157424 Phasianidae ANCESTRAL SPECIES 2 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237.cb ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01070000253816.a.a.a ENSGT00940000160971 ENSGT00940000162359 ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000161201 ENSGT00940000155374 ENSGT00960000189674 ENSGT00940000160946 ENSGT00940000161952 ENSGT00940000160785 ENSGT00940000173950 Japanese quail MODERN SPECIES 22 DACH2 (ENSCJPG00005016472) #9 ENSCJPG00005016473 #11 POF1B (ENSCJPG00005016474) #13 ZNF711 (ENSCJPG00005016475) #14 APOOL (ENSCJPG00005016476) #15 ENSCJPG00005016477 ENSCJPG00005016478 HDX (ENSCJPG00005016479) #18 RPS6KA6 (ENSCJPG00005016480) #19 POU3F4 (ENSCJPG00005016482) #20 ENSCJPG00005016484 ENSCJPG00005016485 ENSCJPG00005016497 SH3BGRL (ENSCJPG00005016498) #21 ENSCJPG00005016500 BRWD3 (ENSCJPG00005016501) #22 TENT5D (ENSCJPG00005016778) ENSCJPG00005016779 ENSCJPG00005016780 CLCN5 (ENSCJPG00005016781) ENSCJPG00005016782 SLITRK4 (ENSCJPG00005016810) SOX3 (ENSCJPG00005016837) ENSCJPG00005016866 GABRA3 (ENSCJPG00005016868) GABRE (ENSCJPG00005016871) CNGA2 (ENSCJPG00005016882) ENSCJPG00005016883 PRRG3 (ENSCJPG00005016884) ENSCJPG00005016885 CLDN2 (ENSCJPG00005016886) Phasianidae_b ANCESTRAL SPECIES 24 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237.cb ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00940000162488 ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01070000253816.a.a.a ENSGT00940000160971 ENSGT00940000162359 ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000161201 ENSGT00940000155374 ENSGT00940000160946 ENSGT00940000161952 ENSGT00940000160785 ENSGT00940000159186 ENSGT00940000157083 Chicken MODERN SPECIES 33 CHM (ENSGALG00010018244) #11 POF1B (ENSGALG00010018283) #13 ZNF711 (ENSGALG00010018274) #14 ENSGALG00010018298 APOOL (ENSGALG00010018310) #15 ENSGALG00010018325 ENSGALG00010019979 HDX (ENSGALG00010015449) #18 RPS6KA6 (ENSGALG00010015487) #19 POU3F4 (ENSGALG00010019346) #20 ENSGALG00010014250 ENSGALG00010014306 ENSGALG00010018947 SH3BGRL (ENSGALG00010019018) #21 HMGN5 (ENSGALG00010019040) BRWD3 (ENSGALG00010019059) #22 FAM46D (ENSGALG00010019114) ENSGALG00010019125 ENSGALG00010019158 CLCN5 (ENSGALG00010019227) TRAIL-LIKE (ENSGALG00010019260) SLITRK4 (ENSGALG00010019325) GABRQ (ENSGALG00010015078) GABRA3 (ENSGALG00010015087) GABRE (ENSGALG00010015096) CNGA2 (ENSGALG00010015104) CLDN2 (ENSGALG00010015115) PRRG3 (ENSGALG00010015129) RIPPLY1 (ENSGALG00010015135) ENSGALG00010015149 ENSGALG00010015169 Turkey MODERN SPECIES 29 KLHL4 (ENSMGAG00000004449) #8 DACH2 (ENSMGAG00000004510) #9 ENSMGAG00000004529 #11 POF1B (ENSMGAG00000004600) #13 ZNF711 (ENSMGAG00000004634) #14 ENSMGAG00000020154 APOOL (ENSMGAG00000004674) #15 ENSMGAG00000004696 ENSMGAG00000021569 HDX (ENSMGAG00000004732) #18 RPS6KA6 (ENSMGAG00000004748) #19 ENSMGAG00000004814 ENSMGAG00000004818 ENSMGAG00000015810 SH3BGRL (ENSMGAG00000004838) #21 BRWD3 (ENSMGAG00000004860) #22 TENT5D (ENSMGAG00000015812) ENSMGAG00000005007 ENSMGAG00000004934 ENSMGAG00000005027 ENSMGAG00000015814 ENSMGAG00000018856 ENSMGAG00000005045 GABRA3 (ENSMGAG00000005137) GABRE (ENSMGAG00000005194) CNGA2 (ENSMGAG00000005170) PRRG3 (ENSMGAG00000005238) ENSMGAG00000005246 ENSMGAG00000017674 TMLHE (ENSMGAG00000005254) ENSMGAG00000015816 Anatidae DUPLICATION Anatidae ANCESTRAL SPECIES 24 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b.x #22 ENSGT00950000183107.a.b.b.w #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b ENSGT00950000182887.C.b.b Duck MODERN SPECIES 1 ENSAPLG00000006804 KLHL4 (ENSAPLG00000005695) #8 DACH2 (ENSAPLG00000006115) #9 ENSAPLG00000006258 #11 POF1B (ENSAPLG00000007116) #13 ZNF711 (ENSAPLG00000007311) #14 ENSAPLG00000007414 APOOL (ENSAPLG00000024832) #15 ENSAPLG00000007509 HDX (ENSAPLG00000007946) #18 RPS6KA6 (ENSAPLG00000008167) #19 ENSAPLG00000008654 ENSAPLG00000008781 SH3BGRL (ENSAPLG00000022802) #21 ENSAPLG00000019694 BRWD3 (ENSAPLG00000009512) #22 ENSAPLG00000028312 TENT5D (ENSAPLG00000011605) CHMP1B (ENSAPLG00000010677) TBX22 (ENSAPLG00000010929) ITM2A (ENSAPLG00000011114) ENSAPLG00000011296 ENSAPLG00000011608 ENSAPLG00000011612 LPAR4 (ENSAPLG00000001317) ENSAPLG00000001322 CYSLTR1 (ENSAPLG00000006621) ENSAPLG00000008101 TAF9 (ENSAPLG00000020242) KIF4A (ENSAPLG00000008191) PDZD11 (ENSAPLG00000021957) Pink-footed goose MODERN SPECIES 4 ENSABRG00000010897 #11 POF1B (ENSABRG00000010810) #13 ZNF711 (ENSABRG00000010688) #14 ENSABRG00000010671 APOOL (ENSABRG00000010661) #15 ENSABRG00000010619 HDX (ENSABRG00000010585) #18 RPS6KA6 (ENSABRG00000007374) #19 POU3F4 (ENSABRG00000007243) #20 ENSABRG00000007234 ENSABRG00000007228 ENSABRG00000007226 SH3BGRL (ENSABRG00000007222) #21 ENSABRG00000007220 ENSABRG00000007216 #22 ENSABRG00000007196 #22 TENT5D (ENSABRG00000007191) CHMP1B (ENSABRG00000007183) TBX22 (ENSABRG00000007170) ITM2A (ENSABRG00000007163) ENSABRG00000007160 ENSABRG00000007158 ENSABRG00000007157 LPAR4 (ENSABRG00000007153) ENSABRG00000007149 CYSLTR1 (ENSABRG00000007145) ENSABRG00000004499 TAF9 (ENSABRG00000004161) KIF4A (ENSABRG00000003237) PDZD11 (ENSABRG00000003127) ENSABRG00000003089 Anatidae ANCESTRAL SPECIES 24 ENSGT00390000001134.b.e #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b.x #22 ENSGT00950000183107.a.b.b.w #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000155097 ENSGT00940000158195 ENSGT00940000153222.a.b.b.b.b Pink-footed goose MODERN SPECIES 4 DACH2 (ENSABRG00000011177) #9 ENSABRG00000010897 #11 POF1B (ENSABRG00000010810) #13 ZNF711 (ENSABRG00000010688) #14 ENSABRG00000010671 APOOL (ENSABRG00000010661) #15 ENSABRG00000010619 HDX (ENSABRG00000010585) #18 RPS6KA6 (ENSABRG00000007374) #19 POU3F4 (ENSABRG00000007243) #20 ENSABRG00000007234 ENSABRG00000007228 ENSABRG00000007226 SH3BGRL (ENSABRG00000007222) #21 ENSABRG00000007220 ENSABRG00000007216 #22 ENSABRG00000007196 #22 TENT5D (ENSABRG00000007191) CHMP1B (ENSABRG00000007183) TBX22 (ENSABRG00000007170) ITM2A (ENSABRG00000007163) ENSABRG00000007160 ENSABRG00000007158 ENSABRG00000007157 LPAR4 (ENSABRG00000007153) ENSABRG00000007149 CYSLTR1 (ENSABRG00000007145) ENSABRG00000004499 TAF9 (ENSABRG00000004161) KIF4A (ENSABRG00000003237) PDZD11 (ENSABRG00000003127) Australian saltwater crocodile MODERN SPECIES 36 ENSCPRG00005010046 APOOL (ENSCPRG00005010049) #15 ENSCPRG00005010059 ENSCPRG00005010080 HDX (ENSCPRG00005010091) #18 RPS6KA6 (ENSCPRG00005010212) #19 POU3F4 (ENSCPRG00005010851) #20 ENSCPRG00005010856 ENSCPRG00005010857 ENSCPRG00005010861 ENSCPRG00005010866 ENSCPRG00005010867 SH3BGRL (ENSCPRG00005010868) #21 ENSCPRG00005010871 ENSCPRG00005010876 BRWD3 (ENSCPRG00005010880) #22 ENSCPRG00005010894 TENT5D (ENSCPRG00005010897) CLCN5 (ENSCPRG00005010901) ENSCPRG00005010906 PIRT (ENSCPRG00005010909) ENSCPRG00005010910 ENSCPRG00005011007 ELAC2 (ENSCPRG00005011541) MYOCD (ENSCPRG00005012141) MAP2K4 (ENSCPRG00005012196) TMEM220 (ENSCPRG00005012270) ADPRM (ENSCPRG00005012273) SCO1 (ENSCPRG00005012277) ENSCPRG00005012280 ENSCPRG00005012332 Cryptodira ANCESTRAL SPECIES 43 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 ENSGT00940000158195 Testudinoidea ANCESTRAL SPECIES 9 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000185117 ENSGT00950000185658 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k Emydidae ANCESTRAL SPECIES 52 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00950000185117 ENSGT00950000185658 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k ENSGT00940000155097 painted turtle MODERN SPECIES 17 ENSCPBG00000014460 ENSCPBG00000014466 APOOL (ENSCPBG00000014469) #15 ENSCPBG00000014473 ENSCPBG00000014474 HDX (ENSCPBG00000014476) #18 RPS6KA6 (ENSCPBG00000014477) #19 ENSCPBG00000014478 POU3F4 (ENSCPBG00000014480) #20 ENSCPBG00000014482 ENSCPBG00000014484 ENSCPBG00000014485 ENSCPBG00000014486 SH3BGRL (ENSCPBG00000014487) #21 ENSCPBG00000014488 BRWD3 (ENSCPBG00000014489) #22 ENSCPBG00000014490 ENSCPBG00000014491 TENT5D (ENSCPBG00000014492) CHMP1B (ENSCPBG00000014493) TBX22 (ENSCPBG00000014494) ENSCPBG00000014495 ITM2A (ENSCPBG00000014497) ENSCPBG00000014500 KLHL4 (ENSCPBG00000014501) #8 ENSCPBG00000014502 ABL2 (ENSCPBG00000014503) TOR3A (ENSCPBG00000014504) FAM20B (ENSCPBG00000014506) RALGPS2 (ENSCPBG00000014507) ANGPTL1 (ENSCPBG00000014508) Three-toed box turtle MODERN SPECIES 61 ZNF711 (ENSTMTG00000011815) #14 ENSTMTG00000011790 ENSTMTG00000011776 ENSTMTG00000011769 APOOL (ENSTMTG00000011730) #15 ENSTMTG00000011701 HDX (ENSTMTG00000011687) #18 RPS6KA6 (ENSTMTG00000003012) #19 POU3F4 (ENSTMTG00000002563) #20 ENSTMTG00000002553 ENSTMTG00000002532 ENSTMTG00000002524 ENSTMTG00000002522 SH3BGRL (ENSTMTG00000002519) #21 ENSTMTG00000002514 BRWD3 (ENSTMTG00000001842) #22 ENSTMTG00000001676 TENT5D (ENSTMTG00000001666) CHMP1B (ENSTMTG00000001657) TBX22 (ENSTMTG00000001640) ITM2A (ENSTMTG00000001630) ENSTMTG00000001618 ENSTMTG00000001610 ENSTMTG00000001604 LPAR4 (ENSTMTG00000001601) ENSTMTG00000001597 CYSLTR1 (ENSTMTG00000001590) ENSTMTG00000001544 ENSTMTG00000001523 TAF9 (ENSTMTG00000001515) ENSTMTG00000001504 Testudinidae ANCESTRAL SPECIES 21 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000165353 ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00950000185117 ENSGT00950000185658 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a.c ENSGT01100000263536.A.a.a.d ENSGT01040000240444.A.a.a.a.b ENSGT01050000245003 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a.k Goode s thornscrub tortoise MODERN SPECIES 23 ENSGEVG00005015222 #11 POF1B (ENSGEVG00005015312) #13 ZNF711 (ENSGEVG00005015654) #14 ENSGEVG00005015707 APOOL (ENSGEVG00005015811) #15 ENSGEVG00005016049 HDX (ENSGEVG00005017426) #18 RPS6KA6 (ENSGEVG00005017450) #19 POU3F4 (ENSGEVG00005017506) #20 ENSGEVG00005017520 ENSGEVG00005017550 ENSGEVG00005017599 ENSGEVG00005017613 SH3BGRL (ENSGEVG00005017624) #21 ENSGEVG00005017639 BRWD3 (ENSGEVG00005017665) #22 ENSGEVG00005017724 ENSGEVG00005017737 TENT5D (ENSGEVG00005017761) CHMP1B (ENSGEVG00005017781) TBX22 (ENSGEVG00005017817) ITM2A (ENSGEVG00005017870) ENSGEVG00005017890 ENSGEVG00005017910 ENSGEVG00005017929 LPAR4 (ENSGEVG00005017940) ENSGEVG00005017955 CYSLTR1 (ENSGEVG00005017965) ENSGEVG00005017986 ENSGEVG00005018052 TAF9 (ENSGEVG00005018083) Abingdon island giant tortoise MODERN SPECIES 1979 ENSCABG00000005411 ENSCABG00000005414 ENSCABG00000005420 ENSCABG00000005424 SH3BGRL (ENSCABG00000005432) #21 ENSCABG00000005435 BRWD3 (ENSCABG00000005444) #22 ENSCABG00000005611 ENSCABG00000005614 TENT5D (ENSCABG00000005616) CHMP1B (ENSCABG00000005618) TBX22 (ENSCABG00000005620) ITM2A (ENSCABG00000005622) ENSCABG00000005625 ENSCABG00000005627 ENSCABG00000005628 LPAR4 (ENSCABG00000005629) ENSCABG00000005631 CYSLTR1 (ENSCABG00000005632) ENSCABG00000005679 ENSCABG00000008419 TAF9 (ENSCABG00000008420) Chinese turtle MODERN SPECIES 1631 RPS6KA6 (ENSPSIG00000006547) #19 POU3F4 (ENSPSIG00000000094) #20 ENSPSIG00000008219 ENSPSIG00000008317 ENSPSIG00000000096 ENSPSIG00000008821 SH3BGRL (ENSPSIG00000008827) #21 ENSPSIG00000008960 BRWD3 (ENSPSIG00000009147) #22 ENSPSIG00000000097 TENT5D (ENSPSIG00000000100) CHMP1B (ENSPSIG00000013179) Anura ANCESTRAL SPECIES 19 ENSGT00940000159818 #8 ENSGT00390000001134.b #9 ENSGT00950000182994.A #11 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00990000205517 ENSGT00530000063666.a #15 ENSGT00940000164237.t ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b Frog MODERN SPECIES 8 chm (ENSXETG00000017820) #11 ENSXETG00000046316 pof1b (ENSXETG00000017818) #13 znf711 (ENSXETG00000017817) #14 ENSXETG00000046191 apool (ENSXETG00000017816) satl1 (ENSXETG00000039007) ENSXETG00000017815 hdx (ENSXETG00000014523) #18 rps6ka6 (ENSXETG00000014506) #19 pou3f4 (ENSXETG00000014504) #20 XB5726496 [provisional:tmem182] (ENSXETG00000026233) slc9a2l (ENSXETG00000014501) ENSXETG00000042644 sh3bgrl (ENSXETG00000044909) #21 brwd3 (ENSXETG00000022117) #22 ENSXETG00000042317 XB5896658 [provisional:stx3] (ENSXETG00000047005) tent5d (ENSXETG00000044889) chmp1b (ENSXETG00000022122) tbx22 (ENSXETG00000006730) itm2a (ENSXETG00000027280) gpr174 (ENSXETG00000006729) srpx2 (ENSXETG00000006728) sytl4 (ENSXETG00000006723) znf282 (ENSXETG00000035960) ENSXETG00000044600 ENSXETG00000047718 tmlhe (ENSXETG00000018382) ENSXETG00000018385 spry3 (ENSXETG00000045132) Leishan spiny toad MODERN SPECIES 12 APOOL (ENSLLEG00000014000) #15 ENSLLEG00000013835 ENSLLEG00000013624 ENSLLEG00000013536 HDX (ENSLLEG00000013463) #18 RPS6KA6 (ENSLLEG00000012752) #19 POU3F4 (ENSLLEG00000012630) #20 ENSLLEG00000012610 ENSLLEG00000012590 ENSLLEG00000012552 ENSLLEG00000012520 ENSLLEG00000012395 ENSLLEG00000012370 SH3BGRL (ENSLLEG00000012318) #21 ENSLLEG00000012280 BRWD3 (ENSLLEG00000012042) #22 ENSLLEG00000011986 TENT5D (ENSLLEG00000011962) CHMP1B (ENSLLEG00000011890) TBX22 (ENSLLEG00000011833) ITM2A (ENSLLEG00000028053) ENSLLEG00000028031 ENSLLEG00000027996 ENSLLEG00000027953 AP2S1 (ENSLLEG00000027801) ENSLLEG00000027768 SLC1A5 (ENSLLEG00000027633) FKRP (ENSLLEG00000027613) GNG8 (ENSLLEG00000027593) PTGIR (ENSLLEG00000027509) ENSLLEG00000027489 Coelacanth MODERN SPECIES 1013 ENSLACG00000007754 ENSLACG00000010109 sh3bgrl (ENSLACG00000010473) #21 ENSLACG00000011746 BRWD3 (ENSLACG00000012260) #22 ENSLACG00000013510 Actinopterygii ANCESTRAL SPECIES 83 ENSGT00390000000141 #13 ENSGT00940000159611 #14 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT00990000203619.B ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT01100000263484.C.a ENSGT00950000183031.B ENSGT01100000263512.a.a.a.a ENSGT00550000075160 Reedfish DUPLICATION Reedfish MODERN SPECIES 604 ENSECRG00000020817 #22 Reedfish MODERN SPECIES 3 POF1B (ENSECRG00000016431) #13 znf711 (ENSECRG00000016350) #14 ENSECRG00000016317 APOOL (ENSECRG00000016295) #15 ENSECRG00000016218 HDX (ENSECRG00000016169) #18 rps6kal (ENSECRG00000015780) #19 ENSECRG00000015655 ENSECRG00000015621 ENSECRG00000015472 POU3F4 (ENSECRG00000015422) #20 ENSECRG00000015354 ENSECRG00000015316 ENSECRG00000015289 sh3bgrl (ENSECRG00000015257) #21 ENSECRG00000015236 #22 ENSECRG00000015178 TENT5D (ENSECRG00000015087) chmp1b (ENSECRG00000014673) TBX22 (ENSECRG00000014468) ITM2A (ENSECRG00000014408) ENSECRG00000014389 ENSECRG00000014375 p2ry10 (ENSECRG00000014343) LPAR4 (ENSECRG00000014329) ENSECRG00000014304 siah2l (ENSECRG00000014277) ENSECRG00000014256 ENSECRG00000014168 ENSECRG00000014054 ENOX2 (ENSECRG00000013991) Neopterygii ANCESTRAL SPECIES 84 ENSGT00520000059318 ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01030000235435 ENSGT01100000263536.B.c.b ENSGT00940000163592 ENSGT00940000153997.b.a.b ENSGT01100000263484.C.a ENSGT00950000183031.B ENSGT01100000263512.a.a.a.a Spotted gar MODERN SPECIES 673 gpc3 (ENSLOCG00000015071) gpc4 (ENSLOCG00000015069) mbnl3 (ENSLOCG00000015065) ENSLOCG00000015063 rap2c (ENSLOCG00000015061) ENSLOCG00000015059 ENSLOCG00000015048 hdx (ENSLOCG00000015046) #18 rps6kal (ENSLOCG00000015032) #19 ENSLOCG00000015028 POU3F4 (ENSLOCG00000017491) #20 ENSLOCG00000015022 ENSLOCG00000015020 sh3bgrl (ENSLOCG00000015016) #21 hmgn6 (ENSLOCG00000015014) BRWD3 (ENSLOCG00000014998) #22 ENSLOCG00000017490 TENT5D (ENSLOCG00000014996) chmp1b (ENSLOCG00000014992) TBX22 (ENSLOCG00000014991) ITM2A (ENSLOCG00000014989) ENSLOCG00000017489 p2ry10 (ENSLOCG00000014987) LPAR4 (ENSLOCG00000017488) ENSLOCG00000014986 cysltr1 (ENSLOCG00000017487) ENSLOCG00000014984 MLNR (ENSLOCG00000014982) rraga (ENSLOCG00000014979) ENSLOCG00000014978 polr1d (ENSLOCG00000014976) Osteoglossocephalai ANCESTRAL SPECIES 71 ENSGT00940000159803 ENSGT00940000157297 ENSGT01030000234566.e.b.b.b ENSGT00940000155920 ENSGT01050000244888.b.a.c.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT01050000244948.d ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01030000235435 ENSGT01100000263536.B.c.b ENSGT00950000183031.B ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 ENSGT00950000182915.a.b Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 385 ENSGT00940000159242.k #19 ENSGT00940000161429.b #20 ENSGT00950000183107.a.b.b.c #22 ENSGT01050000244948.d ENSGT00950000183107.a.b.b.d #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00950000183115.b.b.h ENSGT01100000263536.A.a.b.b ENSGT01100000263536.B.c.b.j ENSGT01100000263512.a.a.a.a.d ENSGT00510000047733.t Asian bonytongue MODERN SPECIES 5 ZC4H2 (ENSSFOG00015008792) shisa2a (ENSSFOG00015008823) mtmr8 (ENSSFOG00015008844) asb12a (ENSSFOG00015008890) amer1 (ENSSFOG00015008892) ARHGEF9 (ENSSFOG00015027567) ENSSFOG00015029964 smarca1 (ENSSFOG00015009043) TENM1 (ENSSFOG00015009122) SH2D1A (ENSSFOG00015009183) agtr2 (ENSSFOG00015009207) apool (ENSSFOG00015029030) #15 ENSSFOG00015009216 rps6kal (ENSSFOG00015009328) #19 POU3F4 (ENSSFOG00015024608) #20 BRWD3 (ENSSFOG00015009384) #22 ENSSFOG00015030281 TENT5D (ENSSFOG00015032738) chmp1b (ENSSFOG00015028441) ENSSFOG00015009454 ENSSFOG00015009463 CYSLTR1 (ENSSFOG00015009469) ENSSFOG00015009476 sybl1 (ENSSFOG00015029613) mpp1 (ENSSFOG00015009567) dkc1 (ENSSFOG00015009585) TMLHE (ENSSFOG00015009685) taf9 (ENSSFOG00015009760) siah2l (ENSSFOG00015027597) ENSSFOG00015009797 GPR119 (ENSSFOG00015009808) P. kingsleyae MODERN SPECIES 29 las1l (ENSPKIG00000012906) ZC3H12B (ENSPKIG00000012946) ZC4H2 (ENSPKIG00000012983) shisa2a (ENSPKIG00000013013) mtmr8 (ENSPKIG00000013052) asb12a (ENSPKIG00000013105) amer1 (ENSPKIG00000013117) ENSPKIG00000013176 FUT7 (ENSPKIG00000013273) ENSPKIG00000013301 smarca1 (ENSPKIG00000013411) TENM1 (ENSPKIG00000013656) ENSPKIG00000013868 RPS6KA6 (ENSPKIG00000014054) #19 POU3F4 (ENSPKIG00000014144) #20 BRWD3 (ENSPKIG00000014173) #22 ENSPKIG00000014242 chmp1b (ENSPKIG00000014262) ENSPKIG00000014290 dnaaf6 (ENSPKIG00000014308) MAGT1 (ENSPKIG00000014323) ENSPKIG00000014353 CNGA2 (ENSPKIG00000014391) si:ch211-153b23.4 (ENSPKIG00000014429) ENSPKIG00000014458 znf711 (ENSPKIG00000014501) #14 taf1 (ENSPKIG00000014590) ENSPKIG00000014694 PLP1 (ENSPKIG00000014799) gria3b (ENSPKIG00000014866) rtn2b (ENSPKIG00000014937) Osteoglossiformes ANCESTRAL SPECIES 385 ENSGT00940000159242.k #19 ENSGT00940000161429.b #20 ENSGT00950000183107.a.b.b.c #22 ENSGT01050000244948.d ENSGT00950000183107.a.b.b.d #22 ENSGT00940000162488 ENSGT00950000182832.D.b ENSGT00950000183115.b.b.h ENSGT01100000263536.A.a.b.b ENSGT01100000263536.B.c.b.j ENSGT01100000263512.a.a.a.a.d ENSGT00510000047733.t Asian bonytongue MODERN SPECIES 4 zc4h2 (ENSSFOG00015012852) asb12b (ENSSFOG00015012811) ENSSFOG00015012727 TENM1 (ENSSFOG00015012635) SH2D1A (ENSSFOG00015032266) AGTR2 (ENSSFOG00015012602) APOOL (ENSSFOG00015012586) #15 ENSSFOG00015012153 ENSSFOG00015009239 hdx (ENSSFOG00015012057) #18 rps6kal (ENSSFOG00015011997) #19 POU3F4 (ENSSFOG00015025647) #20 ENSSFOG00015011963 ENSSFOG00015011953 sh3bgrl (ENSSFOG00015011941) #21 BRWD3 (ENSSFOG00015011846) #22 TENT5D (ENSSFOG00015009416) CHMP1B (ENSSFOG00015011796) TBX22 (ENSSFOG00015011756) ITM2A (ENSSFOG00015011735) ENSSFOG00015011728 p2ry10 (ENSSFOG00015031809) LPAR4 (ENSSFOG00015011713) ENSSFOG00015011703 ENSSFOG00015025572 cysltr1 (ENSSFOG00015011692) ENSSFOG00015011676 ENSSFOG00015011499 rraga (ENSSFOG00015011428) ENSSFOG00015011397 polr1d (ENSSFOG00015011375) Clupeocephala ANCESTRAL SPECIES 86 ENSGT00940000159803 ENSGT00940000157297 ENSGT01030000234566.e.b.b.b ENSGT00940000155920 ENSGT01050000244888.b.a.c.a ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00390000008591 #18 ENSGT00940000159242 #19 ENSGT00940000161429 #20 ENSGT00390000017581.a ENSGT00940000164351 ENSGT00390000011425.A ENSGT00940000156017 #21 ENSGT00950000182802.D ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01030000235435 ENSGT01100000263536.B.c.b ENSGT00950000183031.B ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 ENSGT00950000182915.a.b ENSGT00940000161737 Euteleosteomorpha ANCESTRAL SPECIES 133 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000175813 ENSGT00570000080851 ENSGT00390000003107.b.i ENSGT00940000177260 ENSGT01080000257533 ENSGT00610000087474 ENSGT00940000166868.a Acanthomorphata ANCESTRAL SPECIES 53 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT01040000240566 ENSGT01050000244864.B.a.g.a ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Cod MODERN SPECIES 20 ENSGMOG00000003685 ENSGMOG00000003708 ENSGMOG00000001858 ENSGMOG00000027534 ENSGMOG00000033332 ENSGMOG00000017996 AR (ENSGMOG00000010216) OPHN1 (ENSGMOG00000014176) gjb1a (ENSGMOG00000022490) ENSGMOG00000026036 tbc1d8b (ENSGMOG00000014099) ENSGMOG00000014163 ENSGMOG00000014114 ENSGMOG00000020287 ENSGMOG00000012332 ENSGMOG00000004732 #22 ENSGMOG00000035512 ENSGMOG00000004839 ENSGMOG00000004849 ENSGMOG00000004872 ENSGMOG00000004896 ENSGMOG00000005011 ENSGMOG00000035104 ENSGMOG00000007189 ppm1nb (ENSGMOG00000031036) rtn2b (ENSGMOG00000017752) nectin3b (ENSGMOG00000017549) ENSGMOG00000003420 ENSGMOG00000003200 ENSGMOG00000003451 ENSGMOG00000024864 Euacanthomorphacea ANCESTRAL SPECIES 19 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT01040000240566 ENSGT01050000244864.B.a.g.a ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Pinecone sodierfish MODERN SPECIES 5 msi2a (ENSMMDG00005012339) ENSMMDG00005012335 glra4b (ENSMMDG00005012331) aifm1 (ENSMMDG00005010913) ENSMMDG00005010893 amer1 (ENSMMDG00005010889) ZC3H12B (ENSMMDG00005010876) msna (ENSMMDG00005008982) AR (ENSMMDG00005008721) OPHN1 (ENSMMDG00005008688) gjb1a (ENSMMDG00005008681) gja2 (ENSMMDG00005008677) tbc1d8b (ENSMMDG00005008616) ENSMMDG00005008603 npas2 (ENSMMDG00005008596) BRWD3 (ENSMMDG00005007861) #22 chmp1b (ENSMMDG00005007740) rraga (ENSMMDG00005007632) CNGA2 (ENSMMDG00005007546) pls3 (ENSMMDG00005002058) ENSMMDG00005001920 ccdc61 (ENSMMDG00005001906) ENSMMDG00005001848 ENSMMDG00005001828 ppm1nb (ENSMMDG00005001820) rtn2b (ENSMMDG00005001812) nectin3b (ENSMMDG00005001804) ENSMMDG00005001800 ENSMMDG00005001796 ppme1 (ENSMMDG00005001443) ucp3 (ENSMMDG00005001405) Percomorphaceae ANCESTRAL SPECIES 9 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT01040000240566 ENSGT01050000244864.B.a.g.a ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Tiger tail seahorse MODERN SPECIES 103 glra4b (ENSHCOG00000009138) aifm1 (ENSHCOG00000008578) ENSHCOG00000008534 amer1 (ENSHCOG00000008522) ZC3H12B (ENSHCOG00000008487) msna (ENSHCOG00000008477) AR (ENSHCOG00000008384) ENSHCOG00000007225 gjb1a (ENSHCOG00000007200) ENSHCOG00000007188 tbc1d8b (ENSHCOG00000007176) ENSHCOG00000007133 ENSHCOG00000007126 ENSHCOG00000007101 npas2 (ENSHCOG00000007018) BRWD3 (ENSHCOG00000006979) #22 ENSHCOG00000006871 chmp1b (ENSHCOG00000006856) rraga (ENSHCOG00000006819) CNGA2 (ENSHCOG00000006778) pls3 (ENSHCOG00000006756) ENSHCOG00000006712 ccdc61 (ENSHCOG00000006702) ENSHCOG00000006673 ppm1nb (ENSHCOG00000006662) rtn2b (ENSHCOG00000006642) nectin3b (ENSHCOG00000006615) ppme1 (ENSHCOG00000006610) ucp3 (ENSHCOG00000006586) dnajb13 (ENSHCOG00000006570) rab6a (ENSHCOG00000006550) Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Ovalentaria ANCESTRAL SPECIES 11 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Ovalentaria_B ANCESTRAL SPECIES 16 ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT01040000240566 ENSGT01050000244864.B.a.g.a.a.a ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g Pomacentridae ANCESTRAL SPECIES 10 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a.h ENSGT00940000159134.r.a.a.g.a.a.a ENSGT00940000159134.r.a.a.g.a.a.b ENSGT00940000159134.r.a.a.g.a.b ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Bicolor damselfish MODERN SPECIES 1160 OPHN1 (ENSSPAG00000010286) gjb1a (ENSSPAG00000010273) gja2 (ENSSPAG00000010258) tbc1d8b (ENSSPAG00000010199) ENSSPAG00000010181 npas2 (ENSSPAG00000010139) BRWD3 (ENSSPAG00000010077) #22 TENT5D (ENSSPAG00000010056) chmp1b (ENSSPAG00000010018) rraga (ENSSPAG00000009979) CNGA2 (ENSSPAG00000009954) pls3 (ENSSPAG00000009907) ENSSPAG00000009858 ccdc61 (ENSSPAG00000009814) ENSSPAG00000009793 ENSSPAG00000009779 ppm1nb (ENSSPAG00000009732) Pomacentridae_A ANCESTRAL SPECIES 3 ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a.h ENSGT00940000159134.r.a.a.g.a.a.a ENSGT00940000159134.r.a.a.g.a.a.b ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Spiny chromis MODERN SPECIES 1758 ENSAPOG00000011718 npas2 (ENSAPOG00000011750) BRWD3 (ENSAPOG00000012028) #22 ENSAPOG00000012054 chmp1b (ENSAPOG00000012093) rraga (ENSAPOG00000012140) CNGA2 (ENSAPOG00000012169) Amphiprion ANCESTRAL SPECIES 3 ENSGT00940000159134.r.a.a.h ENSGT00940000159134.r.a.a.g.b.b ENSGT00940000159134.r.a.a.g.a.a.a.d ENSGT00940000159134.r.a.a.g.a.a.b ENSGT00940000159134.r.a.a.g.b.a ENSGT00940000159134.r.a.a.g.a.a.a.c ENSGT00940000155516.u ENSGT00940000181464 ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.h ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Orange clownfish MODERN SPECIES 6 B3GNT3 (ENSAPEG00000007396) B3GNT3 (ENSAPEG00000007381) ENSAPEG00000007375 B3GNT3 (ENSAPEG00000007361) ENSAPEG00000007345 ENSAPEG00000007327 AR (ENSAPEG00000007289) ENSAPEG00000007266 ENSAPEG00000007245 ENSAPEG00000007225 gjb1a (ENSAPEG00000007203) gja2 (ENSAPEG00000007174) tbc1d8b (ENSAPEG00000007059) ENSAPEG00000007002 npas2 (ENSAPEG00000006921) BRWD3 (ENSAPEG00000006664) #22 ENSAPEG00000006630 chmp1b (ENSAPEG00000006610) rraga (ENSAPEG00000006571) CNGA2 (ENSAPEG00000006384) pls3 (ENSAPEG00000006329) ENSAPEG00000006307 ccdc61 (ENSAPEG00000006300) ENSAPEG00000006207 ENSAPEG00000006186 ppm1nb (ENSAPEG00000006160) rtn2b (ENSAPEG00000006129) nectin3b (ENSAPEG00000006070) ENSAPEG00000006027 ppme1 (ENSAPEG00000005978) ucp3 (ENSAPEG00000005954) Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 1337 cadm1b (ENSAOCG00000002650) ncam1b (ENSAOCG00000008083) limk1a (ENSAOCG00000008182) ENSAOCG00000008228 MNT (ENSAOCG00000008234) mettl16 (ENSAOCG00000008277) pafah1b1a (ENSAOCG00000008323) cluha (ENSAOCG00000008439) ENSAOCG00000008582 #22 ENSAOCG00000008606 chmp1b (ENSAOCG00000008616) rraga (ENSAOCG00000002304) CNGA2 (ENSAOCG00000008676) Clown anemonefish MODERN SPECIES 3224 ENSAOCG00000017118 ENSAOCG00000017137 ENSAOCG00000017160 gjb1a (ENSAOCG00000002391) tbc1d8b (ENSAOCG00000017323) ENSAOCG00000001221 npas2 (ENSAOCG00000017516) ENSAOCG00000017548 #22 Cichlidae ANCESTRAL SPECIES 4 ENSGT00390000001738 ENSGT00530000063721.B ENSGT00940000159921.c ENSGT00390000009753 ENSGT00940000159375.c.a ENSGT00940000161083 ENSGT00940000154911 ENSGT00390000018151 ENSGT00990000203589.a.a ENSGT00390000015077 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000171396 ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Midas cichlid MODERN SPECIES 27 zgc:56585 (ENSACIG00000013070) aspa (ENSACIG00000013132) ABR (ENSACIG00000013157) ENSACIG00000013209 npas2 (ENSACIG00000013341) BRWD3 (ENSACIG00000013384) #22 TENT5D (ENSACIG00000013537) chmp1b (ENSACIG00000013546) rraga (ENSACIG00000013561) CNGA2 (ENSACIG00000013635) PLS3 (ENSACIG00000013653) ENSACIG00000013688 ENSACIG00000013780 ENSACIG00000013855 ppm1nb (ENSACIG00000013863) rtn2b (ENSACIG00000013878) nectin3b (ENSACIG00000013905) ENSACIG00000013918 ppme1 (ENSACIG00000013932) ucp3 (ENSACIG00000013999) ucp2 (ENSACIG00000014571) Pseudocrenilabrinae ANCESTRAL SPECIES 14 ENSGT00390000001738 ENSGT00530000063721.B ENSGT00940000159921.c ENSGT00390000009753 ENSGT00940000159375.c.a ENSGT00940000161083 ENSGT00940000154911 ENSGT00390000018151 ENSGT00990000203589.a.a ENSGT00390000015077 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Nile tilapia MODERN SPECIES 1 vps11 (ENSONIG00000004772) ENSONIG00000034958 ENSONIG00000004778 ENSONIG00000032303 akt2l (ENSONIG00000004786) ENSONIG00000039692 ENSONIG00000042032 ENSONIG00000032642 ENSONIG00000025954 ENSONIG00000037875 ENSONIG00000015497 taf6 (ENSONIG00000042438) ENSONIG00000042704 ENSONIG00000004474 npas2 (ENSONIG00000004466) BRWD3 (ENSONIG00000004457) #22 ENSONIG00000036055 chmp1b (ENSONIG00000004453) rraga (ENSONIG00000004447) CNGA2 (ENSONIG00000004443) pls3 (ENSONIG00000004433) ENSONIG00000004427 ccdc61 (ENSONIG00000004422) ENSONIG00000037494 ppm1nb (ENSONIG00000004417) rtn2b (ENSONIG00000004413) nectin3b (ENSONIG00000027285) ppme1 (ENSONIG00000004406) ucp3 (ENSONIG00000038046) dnajb13 (ENSONIG00000004401) ucp2 (ENSONIG00000042368) Pseudocrenilabrinae_A ANCESTRAL SPECIES 21 ENSGT00530000063721.B ENSGT00940000159921.c ENSGT00390000009753 ENSGT00940000159375.c.a ENSGT00940000161083 ENSGT00940000154911 ENSGT00390000018151 ENSGT00940000176839.c.b.a.b.b ENSGT00990000203589.a.a ENSGT00390000015077 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Lyretail cichlid MODERN SPECIES 378 ENSNBRG00000015887 npas2 (ENSNBRG00000015899) BRWD3 (ENSNBRG00000015998) #22 ENSNBRG00000016145 chmp1b (ENSNBRG00000016154) rraga (ENSNBRG00000016166) CNGA2 (ENSNBRG00000016189) pls3 (ENSNBRG00000016222) ENSNBRG00000016297 rtn2b (ENSNBRG00000016458) nectin3b (ENSNBRG00000016475) ENSNBRG00000016503 ppme1 (ENSNBRG00000016545) ucp3 (ENSNBRG00000016592) ucp2 (ENSNBRG00000016602) dnajb13 (ENSNBRG00000016628) rab6a (ENSNBRG00000016716) gjd1a (ENSNBRG00000016753) Haplochromini ANCESTRAL SPECIES 8 ENSGT00530000063721.B ENSGT00940000159921.c ENSGT00390000009753 ENSGT00940000159375.c.a ENSGT00940000161083 ENSGT00940000154911 ENSGT00390000018151 ENSGT00940000176839.c.b.a.b.b ENSGT00990000203589.a.a ENSGT00390000015077 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Haplochromini_A ANCESTRAL SPECIES 6 ENSGT00530000063721.B ENSGT00940000159921.c ENSGT00390000009753 ENSGT00940000159375.c.a ENSGT00940000161083 ENSGT00940000154911 ENSGT00390000018151 ENSGT00940000176839.c.b.a.b.b ENSGT00990000203589.a.a ENSGT00390000015077 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00940000161206 ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Haplochromini_B ANCESTRAL SPECIES 26 ENSGT00530000063721.B ENSGT00940000159921.c ENSGT00390000009753 ENSGT00940000159375.c.a ENSGT00940000161083 ENSGT00940000154911 ENSGT00390000018151 ENSGT00990000203589.a.a ENSGT00390000015077 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00390000013764.ab.a.a.b ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Eastern happy MODERN SPECIES 1 zfpl1 (ENSACLG00000009747) FLRT1 (ENSACLG00000009752) rps6ka4 (ENSACLG00000009762) stip1 (ENSACLG00000009800) ENSACLG00000009843 ENSACLG00000010069 AKAP10 (ENSACLG00000010086) zgc:85789 (ENSACLG00000010122) ENSACLG00000010145 aspa (ENSACLG00000010151) ABR (ENSACLG00000010175) ENSACLG00000010311 ENSACLG00000010312 npas2 (ENSACLG00000010323) ENSACLG00000010333 BRWD3 (ENSACLG00000010338) #22 ENSACLG00000010424 chmp1b (ENSACLG00000010431) rraga (ENSACLG00000010458) CNGA2 (ENSACLG00000010498) pls3 (ENSACLG00000010949) ENSACLG00000011009 ccdc61 (ENSACLG00000011115) ppm1nb (ENSACLG00000011167) ENSACLG00000011197 rtn2b (ENSACLG00000011424) ENSACLG00000011440 nectin3b (ENSACLG00000011444) ppme1 (ENSACLG00000011448) ucp3 (ENSACLG00000011474) ucp2 (ENSACLG00000011486) Zebra mbuna MODERN SPECIES 1092 ENSMZEG00005015869 gria3a (ENSMZEG00005015863) thoc2 (ENSMZEG00005015842) stag2a (ENSMZEG00005015803) ENSMZEG00005015782 ENSMZEG00005015769 myo1ca (ENSMZEG00005015703) ENSMZEG00005015663 DSCAML1 (ENSMZEG00005015615) scn4bb (ENSMZEG00005015588) mpzl2b (ENSMZEG00005015579) pafah1b2 (ENSMZEG00005015552) TAGLN (ENSMZEG00005015246) ENSMZEG00005015197 npas2 (ENSMZEG00005015174) BRWD3 (ENSMZEG00005015137) #22 ENSMZEG00005015106 chmp1b (ENSMZEG00005015095) rraga (ENSMZEG00005015085) CNGA2 (ENSMZEG00005014084) pls3 (ENSMZEG00005014040) ENSMZEG00005013999 ccdc61 (ENSMZEG00005013984) cyb561d1 (ENSMZEG00005013976) aspa (ENSMZEG00005013967) ABR (ENSMZEG00005013860) ENSMZEG00005013840 ENSMZEG00005013820 ENSMZEG00005013807 TMLHE (ENSMZEG00005013795) mpp1 (ENSMZEG00005013784) P. nyererei MODERN SPECIES 359 RADX (ENSPNYG00000021359) npas2 (ENSPNYG00000021323) BRWD3 (ENSPNYG00000021206) #22 ENSPNYG00000021167 chmp1b (ENSPNYG00000021158) rraga (ENSPNYG00000021130) CNGA2 (ENSPNYG00000021007) pls3 (ENSPNYG00000020948) ENSPNYG00000020871 ENSPNYG00000020844 ENSPNYG00000020830 ppm1nb (ENSPNYG00000020811) rtn2b (ENSPNYG00000020801) nectin3b (ENSPNYG00000020746) ENSPNYG00000020721 ppme1 (ENSPNYG00000020708) ucp3 (ENSPNYG00000020691) ucp2 (ENSPNYG00000020671) Burton s mouthbrooder DUPLICATION Burton s mouthbrooder MODERN SPECIES 316 ENSHBUG00000004669 npas2 (ENSHBUG00000004648) ENSHBUG00000004609 #22 ENSHBUG00000004518 chmp1b (ENSHBUG00000004501) rraga (ENSHBUG00000004494) CNGA2 (ENSHBUG00000004404) pls3 (ENSHBUG00000004236) ENSHBUG00000004204 ccdc61 (ENSHBUG00000004145) ENSHBUG00000004115 ppm1nb (ENSHBUG00000004099) rtn2b (ENSHBUG00000004083) nectin3b (ENSHBUG00000004076) ENSHBUG00000004072 ppme1 (ENSHBUG00000004052) ucp3 (ENSHBUG00000000101) dnajb13 (ENSHBUG00000004032) Burton s mouthbrooder MODERN SPECIES 1451 ENSHBUG00000010701 #22 Atherinomorphae ANCESTRAL SPECIES 14 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Oryzias ANCESTRAL SPECIES 14 ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a.d.b ENSGT00940000159134.r.a.a.d.a ENSGT00940000159134.r.a.a.c.a ENSGT00940000159134.r.a.a.c.b ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Oryzias_b ANCESTRAL SPECIES 13 ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a.d.b ENSGT00940000159134.r.a.a.d.a ENSGT00940000159134.r.a.a.c.a ENSGT00940000159134.r.a.a.c.b ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Indian medaka MODERN SPECIES 4 ENSOMEG00000005804 amer1 (ENSOMEG00000005783) ZC3H12B (ENSOMEG00000005768) msna (ENSOMEG00000005751) ENSOMEG00000005721 ENSOMEG00000005714 ENSOMEG00000005708 AR (ENSOMEG00000005697) ENSOMEG00000005630 gjb1a (ENSOMEG00000005589) gja2 (ENSOMEG00000005581) tbc1d8b (ENSOMEG00000005561) ENSOMEG00000005481 ENSOMEG00000005470 npas2 (ENSOMEG00000005430) BRWD3 (ENSOMEG00000005390) #22 TENT5D (ENSOMEG00000005309) chmp1b (ENSOMEG00000005267) rraga (ENSOMEG00000005139) CNGA2 (ENSOMEG00000005093) pls3 (ENSOMEG00000005011) ENSOMEG00000004958 ccdc61 (ENSOMEG00000004892) ENSOMEG00000004850 ppm1nb (ENSOMEG00000004837) rtn2b (ENSOMEG00000004824) nectin3b (ENSOMEG00000004811) ENSOMEG00000004795 ppme1 (ENSOMEG00000004752) ucp3 (ENSOMEG00000004623) dnajb13 (ENSOMEG00000004426) Javanese ricefish MODERN SPECIES 5 ZC3H12B (ENSOJAG00000014473) msna (ENSOJAG00000014569) ENSOJAG00000015831 ENSOJAG00000015839 ENSOJAG00000015844 ENSOJAG00000015847 AR (ENSOJAG00000015864) ENSOJAG00000016019 gjb1a (ENSOJAG00000016102) ENSOJAG00000016125 gja2 (ENSOJAG00000016134) tbc1d8b (ENSOJAG00000016184) ENSOJAG00000016536 ENSOJAG00000016559 npas2 (ENSOJAG00000016582) BRWD3 (ENSOJAG00000016872) #22 TENT5D (ENSOJAG00000019640) chmp1b (ENSOJAG00000019669) rraga (ENSOJAG00000019841) CNGA2 (ENSOJAG00000019872) pls3 (ENSOJAG00000019888) ENSOJAG00000020080 ccdc61 (ENSOJAG00000020163) ENSOJAG00000020176 ppm1nb (ENSOJAG00000020181) rtn2b (ENSOJAG00000020189) nectin3b (ENSOJAG00000020196) ppme1 (ENSOJAG00000020198) ucp3 (ENSOJAG00000020212) ucp2 (ENSOJAG00000020229) dnajb13 (ENSOJAG00000020237) Oryzias_a ANCESTRAL SPECIES 2 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a.d.b ENSGT00940000159134.r.a.a.d.a ENSGT00940000159134.r.a.a.c.a ENSGT00940000159134.r.a.a.c.b ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Japanese Medaka HdrR MODERN SPECIES 5 amer1 (ENSORLG00000009557) ZC3H12B (ENSORLG00000009556) msna (ENSORLG00000009545) ENSORLG00000009535 ENSORLG00000009531 ENSORLG00000022233 ENSORLG00000028693 ar (ENSORLG00000009520) ENSORLG00000010945 gjb1a (ENSORLG00000009493) gja2 (ENSORLG00000009487) ENSORLG00000026146 tbc1d8b (ENSORLG00000009483) ENSORLG00000009451 npas2 (ENSORLG00000009426) BRWD3 (ENSORLG00000009372) #22 TENT5D (ENSORLG00000009311) chmp1b (ENSORLG00000009300) rraga (ENSORLG00000009278) CNGA2 (ENSORLG00000009251) pls3 (ENSORLG00000009227) ENSORLG00000009187 ccdc61 (ENSORLG00000009166) ENSORLG00000009162 ppm1nb (ENSORLG00000009154) rtn2b (ENSORLG00000009139) nectin3b (ENSORLG00000009130) ENSORLG00000009120 ppme1 (ENSORLG00000009114) ucp3 (ENSORLG00000009082) ucp2 (ENSORLG00000024683) Chinese medaka MODERN SPECIES 717 glra4b (ENSOSIG00000019618) aifm1 (ENSOSIG00000019663) ENSOSIG00000020210 amer1 (ENSOSIG00000020214) ZC3H12B (ENSOSIG00000020215) msna (ENSOSIG00000020259) B3GNT3 (ENSOSIG00000020994) ENSOSIG00000020998 AR (ENSOSIG00000021028) ENSOSIG00000021099 gjb1a (ENSOSIG00000021117) gja2 (ENSOSIG00000021120) tbc1d8b (ENSOSIG00000021222) ENSOSIG00000021792 npas2 (ENSOSIG00000021828) BRWD3 (ENSOSIG00000022076) #22 TENT5D (ENSOSIG00000023041) chmp1b (ENSOSIG00000023049) rraga (ENSOSIG00000000690) CNGA2 (ENSOSIG00000000697) pls3 (ENSOSIG00000000752) ENSOSIG00000003279 ccdc61 (ENSOSIG00000003316) ENSOSIG00000003324 ppm1nb (ENSOSIG00000003326) rtn2b (ENSOSIG00000003329) nectin3b (ENSOSIG00000003333) ENSOSIG00000003335 ppme1 (ENSOSIG00000003340) ucp3 (ENSOSIG00000003345) ucp2 (ENSOSIG00000003349) Cyprinodontiformes ANCESTRAL SPECIES 11 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.a.a ENSGT01050000244864.B.a.g.a.a.b ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Aplocheiloidei ANCESTRAL SPECIES 33 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01050000244864.B.a.g.a.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Mangrove rivulus MODERN SPECIES 270 ENSKMAG00000004876 ENSKMAG00000004890 amer1 (ENSKMAG00000004910) ZC3H12B (ENSKMAG00000004921) msna (ENSKMAG00000004941) B3GNT3 (ENSKMAG00000004982) AR (ENSKMAG00000004997) ENSKMAG00000005233 gjb1a (ENSKMAG00000005263) gja2 (ENSKMAG00000005284) gja2 (ENSKMAG00000005293) tbc1d8b (ENSKMAG00000005339) ENSKMAG00000005486 npas2 (ENSKMAG00000005526) BRWD3 (ENSKMAG00000005579) #22 TENT5D (ENSKMAG00000005667) chmp1b (ENSKMAG00000005682) rraga (ENSKMAG00000005709) CNGA2 (ENSKMAG00000005751) pls3 (ENSKMAG00000005776) ENSKMAG00000005837 ccdc61 (ENSKMAG00000005893) ENSKMAG00000005915 ppm1nb (ENSKMAG00000005937) rtn2b (ENSKMAG00000005961) nectin3b (ENSKMAG00000005978) ENSKMAG00000006003 ppme1 (ENSKMAG00000006028) Turquoise killifish MODERN SPECIES 1620 GAB3 (ENSNFUG00015021877) amer1 (ENSNFUG00015021872) ZC3H12B (ENSNFUG00015021869) MSNA (ENSNFUG00015020796) ENSNFUG00015020753 AR (ENSNFUG00015020749) OPHN1 (ENSNFUG00015018919) ENSNFUG00015018860 gjb1a (ENSNFUG00015018857) gja2 (ENSNFUG00015018852) ENSNFUG00015018850 TBC1D8B (ENSNFUG00015018216) C5HXORF57 (ENSNFUG00015018191) ENSNFUG00015018186 NPAS2 (ENSNFUG00015018169) BRWD3 (ENSNFUG00015017350) #22 TENT5D (ENSNFUG00015017317) CHMP1B (ENSNFUG00015017278) rraga (ENSNFUG00015017261) CNGA2 (ENSNFUG00015017253) pls3 (ENSNFUG00015017078) ATRX (ENSNFUG00015017044) CCDC61 (ENSNFUG00015017031) ENSNFUG00015017021 ENSNFUG00015017014 ENSNFUG00015017010 ENSNFUG00015016996 PPM1NB (ENSNFUG00015016986) rtn2b (ENSNFUG00015016982) nectin3b (ENSNFUG00015016977) PPME1 (ENSNFUG00015016962) Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01050000244864.B.a.g.a.a.b ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Poeciliinae ANCESTRAL SPECIES 17 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01050000244864.B.a.g.a.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Platyfish MODERN SPECIES 2 ZC3H12B (ENSXMAG00000018548) msna (ENSXMAG00000018525) B3GNT3 (ENSXMAG00000027805) AR (ENSXMAG00000023442) OPHN1 (ENSXMAG00000021685) ENSXMAG00000029800 gjb1a (ENSXMAG00000029867) gja2 (ENSXMAG00000027392) gja2 (ENSXMAG00000021028) gja2 (ENSXMAG00000025383) gja2 (ENSXMAG00000027510) ENSXMAG00000028924 tbc1d8b (ENSXMAG00000023726) ENSXMAG00000012287 npas2 (ENSXMAG00000012189) BRWD3 (ENSXMAG00000012127) #22 TENT5D (ENSXMAG00000012123) chmp1b (ENSXMAG00000012118) rraga (ENSXMAG00000012105) CNGA2 (ENSXMAG00000028832) pls3 (ENSXMAG00000012062) ENSXMAG00000012039 ccdc61 (ENSXMAG00000012022) ENSXMAG00000012018 ppm1nb (ENSXMAG00000012008) rtn2b (ENSXMAG00000021539) nectin3b (ENSXMAG00000022318) ppme1 (ENSXMAG00000011978) ucp3 (ENSXMAG00000011950) ucp2 (ENSXMAG00000011949) dnajb13 (ENSXMAG00000011921) Poecilia ANCESTRAL SPECIES 7 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01040000240566 ENSGT01050000244864.B.a.g.a.a.a ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Guppy MODERN SPECIES 444 amer1 (ENSPREG00000020786) ZC3H12B (ENSPREG00000020794) msna (ENSPREG00000020812) ENSPREG00000020832 AR (ENSPREG00000020840) ENSPREG00000020861 gjb1a (ENSPREG00000020930) ENSPREG00000020937 gja2 (ENSPREG00000020947) ENSPREG00000020955 gja2 (ENSPREG00000020967) ENSPREG00000020977 tbc1d8b (ENSPREG00000021002) ENSPREG00000021030 npas2 (ENSPREG00000021052) BRWD3 (ENSPREG00000021090) #22 TENT5D (ENSPREG00000021126) chmp1b (ENSPREG00000021134) rraga (ENSPREG00000021154) CNGA2 (ENSPREG00000021190) pls3 (ENSPREG00000021205) ccdc61 (ENSPREG00000021232) ENSPREG00000021247 ppm1nb (ENSPREG00000021264) rtn2b (ENSPREG00000021273) nectin3b (ENSPREG00000021279) ENSPREG00000021287 ppme1 (ENSPREG00000021297) ucp3 (ENSPREG00000021314) ucp2 (ENSPREG00000021346) dnajb13 (ENSPREG00000021488) NAME_6 ANCESTRAL SPECIES 16 ENSGT00940000166439.d ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00900000143377 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Sailfin molly MODERN SPECIES 758 tbc1d8b (ENSPLAG00000007065) ENSPLAG00000006960 ENSPLAG00000006947 ENSPLAG00000006928 npas2 (ENSPLAG00000006839) BRWD3 (ENSPLAG00000006747) #22 TENT5D (ENSPLAG00000006567) chmp1b (ENSPLAG00000006549) rraga (ENSPLAG00000006541) CNGA2 (ENSPLAG00000006514) pls3 (ENSPLAG00000006463) ENSPLAG00000006423 ccdc61 (ENSPLAG00000006399) ENSPLAG00000006342 ppm1nb (ENSPLAG00000006327) rtn2b (ENSPLAG00000006307) Amazon molly DUPLICATION Amazon molly MODERN SPECIES 266 ENSPFOG00000019342 glra4b (ENSPFOG00000019344) aifm1 (ENSPFOG00000019351) ENSPFOG00000019357 amer1 (ENSPFOG00000020546) ZC3H12B (ENSPFOG00000019365) msna (ENSPFOG00000019370) ENSPFOG00000020547 AR (ENSPFOG00000019378) ENSPFOG00000019388 gjb1a (ENSPFOG00000019398) gja2 (ENSPFOG00000020548) tbc1d8b (ENSPFOG00000019408) ENSPFOG00000019420 npas2 (ENSPFOG00000019432) ENSPFOG00000019442 #22 TENT5D (ENSPFOG00000019451) chmp1b (ENSPFOG00000019452) rraga (ENSPFOG00000019453) CNGA2 (ENSPFOG00000019454) pls3 (ENSPFOG00000019459) ENSPFOG00000019467 ccdc61 (ENSPFOG00000019472) ENSPFOG00000019475 ppm1nb (ENSPFOG00000019480) rtn2b (ENSPFOG00000019484) ENSPFOG00000023643 nectin3b (ENSPFOG00000019487) ENSPFOG00000020549 ppme1 (ENSPFOG00000019491) ucp3 (ENSPFOG00000023273) Amazon molly MODERN SPECIES 619 kcnab1a (ENSPFOG00000004612) ENSPFOG00000004893 gmps (ENSPFOG00000005179) slc33a1 (ENSPFOG00000005401) rps6kb1b (ENSPFOG00000005577) tubd1 (ENSPFOG00000005581) vmp1 (ENSPFOG00000005645) ENSPFOG00000005842 ATM (ENSPFOG00000005882) TMPRSS2 (ENSPFOG00000022474) bace2 (ENSPFOG00000006331) DSCAM (ENSPFOG00000006723) ENSPFOG00000008069 sh3bgr (ENSPFOG00000008082) get1 (ENSPFOG00000008133) ENSPFOG00000021806 #22 NAME_4 ANCESTRAL SPECIES 5 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.a.a ENSGT01050000244864.B.a.g.a.a.b ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b.d ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Mummichog MODERN SPECIES 2214 amer1 (ENSFHEG00000002400) ZC3H12B (ENSFHEG00000002391) msna (ENSFHEG00000002378) B3GNT3 (ENSFHEG00000002344) AR (ENSFHEG00000002341) ENSFHEG00000002337 gjb1a (ENSFHEG00000002331) ENSFHEG00000002329 gja2 (ENSFHEG00000002327) gja2 (ENSFHEG00000002323) gja2 (ENSFHEG00000002318) tbc1d8b (ENSFHEG00000002311) ENSFHEG00000002260 ENSFHEG00000002255 npas2 (ENSFHEG00000000074) BRWD3 (ENSFHEG00000002228) #22 TENT5D (ENSFHEG00000002162) chmp1b (ENSFHEG00000002156) rraga (ENSFHEG00000002145) CNGA2 (ENSFHEG00000002136) pls3 (ENSFHEG00000002131) ENSFHEG00000002109 ccdc61 (ENSFHEG00000002042) Sheepshead minnow MODERN SPECIES 310 ENSCVAG00000021298 samsn1b (ENSCVAG00000021311) ENSCVAG00000021317 usp25 (ENSCVAG00000021383) WSCD1 (ENSCVAG00000021400) ENSCVAG00000021412 tbc1d8b (ENSCVAG00000021437) ENSCVAG00000021549 npas2 (ENSCVAG00000000549) BRWD3 (ENSCVAG00000000553) #22 TENT5D (ENSCVAG00000021677) chmp1b (ENSCVAG00000021707) rraga (ENSCVAG00000021719) CNGA2 (ENSCVAG00000021898) PLS3 (ENSCVAG00000021938) ENSCVAG00000021948 ENSCVAG00000000868 ccdc61 (ENSCVAG00000022006) ENSCVAG00000022040 ppm1nb (ENSCVAG00000022080) rtn2b (ENSCVAG00000022112) nectin3b (ENSCVAG00000022118) ENSCVAG00000022131 ppme1 (ENSCVAG00000022154) ucp3 (ENSCVAG00000022170) Percomorphaceae_C ANCESTRAL SPECIES 10 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Percomorphaceae_D ANCESTRAL SPECIES 16 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Carangaria ANCESTRAL SPECIES 16 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Carangaria_A ANCESTRAL SPECIES 8 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157.h ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Barramundi perch MODERN SPECIES 94 aifm1 (ENSLCAG00010022282) ENSLCAG00010022524 amer1 (ENSLCAG00010022526) ZC3H12B (ENSLCAG00010022530) msna (ENSLCAG00010022676) B3GNT3 (ENSLCAG00010023358) AR (ENSLCAG00010023371) ENSLCAG00010023403 gjb1a (ENSLCAG00010023412) ENSLCAG00010023414 gja2 (ENSLCAG00010023418) tbc1d8b (ENSLCAG00010023424) ENSLCAG00010023435 ENSLCAG00010023440 npas2 (ENSLCAG00010023450) BRWD3 (ENSLCAG00010023517) #22 ENSLCAG00010023645 chmp1b (ENSLCAG00010023659) rraga (ENSLCAG00010023694) CNGA2 (ENSLCAG00010023703) pls3 (ENSLCAG00010023723) ENSLCAG00010023769 ccdc61 (ENSLCAG00010023777) ENSLCAG00010023781 ENSLCAG00010023787 ppm1nb (ENSLCAG00010023793) rtn2b (ENSLCAG00010023803) nectin3b (ENSLCAG00010023807) ppme1 (ENSLCAG00010023813) ucp3 (ENSLCAG00010023816) ucp2 (ENSLCAG00010023829) Seriola ANCESTRAL SPECIES 2 ENSGT00940000177367 ENSGT00950000183181.B.b.l.a ENSGT00940000178266 ENSGT00940000159055 ENSGT00390000009588 ENSGT00940000175043 ENSGT00390000006659 ENSGT00390000000083.b ENSGT00940000159985 ENSGT00390000002960.d ENSGT00940000157126.f ENSGT00940000159451 ENSGT01050000245018 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Greater amberjack MODERN SPECIES 139 ENSSDUG00000015566 ENSSDUG00000015554 ENSSDUG00000015549 ENSSDUG00000015534 AMOT (ENSSDUG00000015419) ska2 (ENSSDUG00000015396) riox2 (ENSSDUG00000015220) ENSSDUG00000015197 HLCS (ENSSDUG00000015168) ENSSDUG00000015131 KIRREL3 (ENSSDUG00000015095) ENSSDUG00000015085 tbc1d8b (ENSSDUG00000014998) ENSSDUG00000014948 npas2 (ENSSDUG00000014830) BRWD3 (ENSSDUG00000014605) #22 TENT5D (ENSSDUG00000014579) chmp1b (ENSSDUG00000014560) rraga (ENSSDUG00000014535) CNGA2 (ENSSDUG00000014515) pls3 (ENSSDUG00000014465) ENSSDUG00000014382 ccdc61 (ENSSDUG00000014355) ENSSDUG00000014265 ENSSDUG00000014243 ppm1nb (ENSSDUG00000014230) rtn2b (ENSSDUG00000014219) nectin3b (ENSSDUG00000014199) ENSSDUG00000014182 ENSSDUG00000014168 ppme1 (ENSSDUG00000014109) Yellowtail amberjack DUPLICATION Yellowtail amberjack MODERN SPECIES 2686 ENSSLDG00000014083 ENSSLDG00000014099 ENSSLDG00000014114 ENSSLDG00000014131 AMOT (ENSSLDG00000014165) ENSSLDG00000014209 tiprl (ENSSLDG00000014256) riox2 (ENSSLDG00000014285) ENSSLDG00000014306 HLCS (ENSSLDG00000014325) KIRREL3 (ENSSLDG00000014346) tbc1d8b (ENSSLDG00000014425) ENSSLDG00000014550 ENSSLDG00000014568 npas2 (ENSSLDG00000014599) ENSSLDG00000014679 #22 TENT5D (ENSSLDG00000014810) chmp1b (ENSSLDG00000014820) rraga (ENSSLDG00000014834) CNGA2 (ENSSLDG00000014847) pls3 (ENSSLDG00000014867) ENSSLDG00000014908 ccdc61 (ENSSLDG00000014972) ENSSLDG00000015015 ppm1nb (ENSSLDG00000015047) rtn2b (ENSSLDG00000015066) nectin3b (ENSSLDG00000015093) ppme1 (ENSSLDG00000015120) ucp3 (ENSSLDG00000015160) ucp2 (ENSSLDG00000015224) dnajb13 (ENSSLDG00000015253) Yellowtail amberjack MODERN SPECIES 167 ENSSLDG00000003642 #22 Pleuronectoidei ANCESTRAL SPECIES 27 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000159134.r.a.a ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.b ENSGT01050000245018 ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B Turbot MODERN SPECIES 16 ENSSMAG00000017197 ENSSMAG00000000335 dnajb13 (ENSSMAG00000017271) ENSSMAG00000017308 ucp3 (ENSSMAG00000017321) PPME1 (ENSSMAG00000017329) ENSSMAG00000017343 nectin3b (ENSSMAG00000024608) rtn2b (ENSSMAG00000030216) ppm1nb (ENSSMAG00000017377) ENSSMAG00000017399 ENSSMAG00000017414 ENSSMAG00000030770 ENSSMAG00000017452 ENSSMAG00000017527 ENSSMAG00000017591 #22 ENSSMAG00000017782 ENSSMAG00000017791 ENSSMAG00000017797 ENSSMAG00000017821 ENSSMAG00000017842 ENSSMAG00000017957 ENSSMAG00000018004 ENSSMAG00000018062 ENSSMAG00000032400 tbc1d8b (ENSSMAG00000018089) ENSSMAG00000023654 ENSSMAG00000018212 ENSSMAG00000018216 gjb1a (ENSSMAG00000036106) ENSSMAG00000018235 Tongue sole MODERN SPECIES 10 ccdc61 (ENSCSEG00000014154) ENSCSEG00000014152 rraga (ENSCSEG00000014142) CNGA2 (ENSCSEG00000014115) pls3 (ENSCSEG00000014090) B3GNT3 (ENSCSEG00000014084) ENSCSEG00000014074 ENSCSEG00000014046 ENSCSEG00000014039 gjb1a (ENSCSEG00000014032) gja2 (ENSCSEG00000014029) ENSCSEG00000014026 tbc1d8b (ENSCSEG00000013993) ENSCSEG00000013963 npas2 (ENSCSEG00000013933) BRWD3 (ENSCSEG00000013874) #22 glra4b (ENSCSEG00000013727) aifm1 (ENSCSEG00000013706) ENSCSEG00000013695 amer1 (ENSCSEG00000013691) ZC3H12B (ENSCSEG00000013686) msna (ENSCSEG00000013618) ENSCSEG00000013571 msi2a (ENSCSEG00000013557) MSI2 (ENSCSEG00000013549) ENSCSEG00000013535 ENSCSEG00000013527 KSR1 (ENSCSEG00000013460) ENSCSEG00000013432 cbx5 (ENSCSEG00000013421) ENSCSEG00000013256 Anabantaria ANCESTRAL SPECIES 13 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 ENSGT00940000158090 Anabantoidei ANCESTRAL SPECIES 12 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 ENSGT00940000158090 Climbing perch MODERN SPECIES 5 ENSATEG00000010578 ENSATEG00000010646 ENSATEG00000011093 ENSATEG00000011150 ENSATEG00000011160 ENSATEG00000011175 ENSATEG00000011185 AR (ENSATEG00000011237) OPHN1 (ENSATEG00000011249) gjb1a (ENSATEG00000011272) ENSATEG00000025360 ENSATEG00000026979 tbc1d8b (ENSATEG00000011324) ENSATEG00000011419 ENSATEG00000011497 ENSATEG00000011566 #22 ENSATEG00000011859 ENSATEG00000027417 ENSATEG00000011885 ENSATEG00000011912 ENSATEG00000012033 ENSATEG00000012096 ENSATEG00000029657 ENSATEG00000012119 ENSATEG00000012175 ENSATEG00000012223 ppm1nb (ENSATEG00000012234) rtn2b (ENSATEG00000012255) nectin3b (ENSATEG00000012282) PPME1 (ENSATEG00000012360) ucp3 (ENSATEG00000012397) Siamese fighting fish MODERN SPECIES 5 msi2a (ENSBSLG00000018598) ENSBSLG00000018578 ENSBSLG00000018544 ENSBSLG00000018499 aifm1 (ENSBSLG00000017327) amer1 (ENSBSLG00000017258) ZC3H12B (ENSBSLG00000017245) msna (ENSBSLG00000016550) AR (ENSBSLG00000016481) OPHN1 (ENSBSLG00000016450) gjb1a (ENSBSLG00000016438) gja2 (ENSBSLG00000016437) tbc1d8b (ENSBSLG00000016302) ENSBSLG00000016288 npas2 (ENSBSLG00000016275) BRWD3 (ENSBSLG00000015744) #22 ENSBSLG00000015702 chmp1b (ENSBSLG00000015658) rraga (ENSBSLG00000015604) CNGA2 (ENSBSLG00000015275) pls3 (ENSBSLG00000015077) ENSBSLG00000015043 ENSBSLG00000015034 ENSBSLG00000015012 ENSBSLG00000015007 ppm1nb (ENSBSLG00000014891) rtn2b (ENSBSLG00000014699) nectin3b (ENSBSLG00000014643) ppme1 (ENSBSLG00000014449) ucp3 (ENSBSLG00000014434) dnajb13 (ENSBSLG00000014411) Zig-zag eel MODERN SPECIES 5 ENSMAMG00000027967 ENSMAMG00000010608 ENSMAMG00000011728 ENSMAMG00000011741 ENSMAMG00000011753 ENSMAMG00000011770 ENSMAMG00000011776 AR (ENSMAMG00000011824) OPHN1 (ENSMAMG00000011855) gjb1a (ENSMAMG00000010069) ENSMAMG00000024823 ENSMAMG00000026649 tbc1d8b (ENSMAMG00000011899) ENSMAMG00000011969 ENSMAMG00000011983 ENSMAMG00000012051 #22 ENSMAMG00000012072 ENSMAMG00000012081 ENSMAMG00000012091 ENSMAMG00000012107 ENSMAMG00000012123 ENSMAMG00000012149 ENSMAMG00000012238 ENSMAMG00000012287 ENSMAMG00000012300 rtn2b (ENSMAMG00000012348) ENSMAMG00000026359 ppm1nb (ENSMAMG00000012336) nectin3b (ENSMAMG00000024393) PPME1 (ENSMAMG00000012372) ucp3 (ENSMAMG00000012405) Eupercaria ANCESTRAL SPECIES 17 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Tetraodontidae ANCESTRAL SPECIES 6 ENSGT00940000166439 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Fugu MODERN SPECIES 6 nufip2 (ENSTRUG00000011736) glra4b (ENSTRUG00000011755) aifm1 (ENSTRUG00000011928) ENSTRUG00000024861 amer1 (ENSTRUG00000024134) ZC3H12B (ENSTRUG00000012186) msna (ENSTRUG00000012243) AR (ENSTRUG00000012421) OPHN1 (ENSTRUG00000012554) ENSTRUG00000022533 gjb1a (ENSTRUG00000012976) gja2 (ENSTRUG00000012999) tbc1d8b (ENSTRUG00000013007) ENSTRUG00000013243 npas2 (ENSTRUG00000013269) BRWD3 (ENSTRUG00000013452) #22 ENSTRUG00000027268 chmp1b (ENSTRUG00000013745) rraga (ENSTRUG00000013796) CNGA2 (ENSTRUG00000013886) pls3 (ENSTRUG00000013960) ccdc61 (ENSTRUG00000014187) ENSTRUG00000014239 ENSTRUG00000014245 ppm1nb (ENSTRUG00000014288) rtn8 (ENSTRUG00000014329) nectin3b (ENSTRUG00000020511) ppme1 (ENSTRUG00000014414) ucp3 (ENSTRUG00000014470) ucp2 (ENSTRUG00000014496) dnajb13 (ENSTRUG00000014519) Tetraodon MODERN SPECIES 22 ENSTNIG00000011830 ENSTNIG00000011829 ZC3H12B (ENSTNIG00000011828) msna (ENSTNIG00000011827) AR (ENSTNIG00000011826) OPHN1 (ENSTNIG00000001569) gjb1a (ENSTNIG00000011825) gja2 (ENSTNIG00000011824) tbc1d8b (ENSTNIG00000011823) npas2 (ENSTNIG00000011822) ENSTNIG00000011821 ENSTNIG00000001143 gbp (ENSTNIG00000011820) syt11b (ENSTNIG00000011818) ENSTNIG00000011817 BRWD3 (ENSTNIG00000011816) #22 ENSTNIG00000011815 rraga (ENSTNIG00000011814) CNGA2 (ENSTNIG00000011813) PLS3 (ENSTNIG00000011812) ENSTNIG00000011811 ccdc61 (ENSTNIG00000011810) ENSTNIG00000011809 ENSTNIG00000001363 ppm1nb (ENSTNIG00000011808) rtn2b (ENSTNIG00000011807) nectin3b (ENSTNIG00000011806) ppme1 (ENSTNIG00000011805) ucp3 (ENSTNIG00000011804) ucp2 (ENSTNIG00000011803) dnajb13 (ENSTNIG00000011802) Eupecaria_A ANCESTRAL SPECIES 17 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01050000244864.B.a.g.a.b ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.a.a ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Eupecaria_B ANCESTRAL SPECIES 17 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT01050000244864.B.a.g.a.a.a ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Eupecaria_C ANCESTRAL SPECIES 15 ENSGT00940000166439 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 Eupercaria_incertae_sedis ANCESTRAL SPECIES 12 ENSGT00940000166439 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159803 ENSGT00530000063529.B ENSGT00940000159316 ENSGT01090000260082.d.a.a.d ENSGT00940000155516.u ENSGT00940000160157 ENSGT01030000234513.B.a.d ENSGT01030000235048 ENSGT01050000244864.B.a.g.a.b ENSGT00940000159451 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b ENSGT00940000159524 European seabass MODERN SPECIES 4 ENSDLAG00005022002 ENSDLAG00005022017 ENSDLAG00005022044 ENSDLAG00005033865 ENSDLAG00005022344 ENSDLAG00005022345 ENSDLAG00005022363 AR (ENSDLAG00005022649) OPHN1 (ENSDLAG00005022730) gjb1a (ENSDLAG00005028745) ENSDLAG00005022762 ENSDLAG00005030425 tbc1d8b (ENSDLAG00005022776) ENSDLAG00005022852 ENSDLAG00005022872 ENSDLAG00005023076 #22 ENSDLAG00005030377 ENSDLAG00005024108 ENSDLAG00005024163 ENSDLAG00005024186 ENSDLAG00005024221 ENSDLAG00005024310 ENSDLAG00005024326 ENSDLAG00005034145 ppm1nb (ENSDLAG00005024351) rtn2b (ENSDLAG00005028902) nectin3b (ENSDLAG00005024357) ENSDLAG00005028878 PPME1 (ENSDLAG00005024361) ucp3 (ENSDLAG00005024375) ENSDLAG00005024379 Large yellow croaker MODERN SPECIES 493 msi2a (ENSLCRG00005023379) ENSLCRG00005023384 glra4b (ENSLCRG00005023387) aifm1 (ENSLCRG00005023395) ENSLCRG00005023455 amer1 (ENSLCRG00005023457) ZC3H12B (ENSLCRG00005023461) msna (ENSLCRG00005023471) ar (ENSLCRG00005023491) OPHN1 (ENSLCRG00005023509) gjb1a (ENSLCRG00005023577) gja2 (ENSLCRG00005023578) tbc1d8b (ENSLCRG00005023579) ENSLCRG00005023602 npas2 (ENSLCRG00005023607) BRWD3 (ENSLCRG00005023625) #22 ENSLCRG00005023686 chmp1b (ENSLCRG00005023689) rraga (ENSLCRG00005023691) CNGA2 (ENSLCRG00005009273) pls3 (ENSLCRG00005009304) ENSLCRG00005009339 ccdc61 (ENSLCRG00005009345) ENSLCRG00005009346 ENSLCRG00005009356 ppm1nb (ENSLCRG00005009357) rtn2b (ENSLCRG00005009358) nectin3b (ENSLCRG00005009359) ppme1 (ENSLCRG00005009360) ucp3 (ENSLCRG00005009430) dnajb13 (ENSLCRG00005009435) Gilthead seabream MODERN SPECIES 4 ENSSAUG00010011601 glra4b (ENSSAUG00010011603) aifm1 (ENSSAUG00010011631) ENSSAUG00010014634 amer1 (ENSSAUG00010014636) ZC3H12B (ENSSAUG00010014639) msna (ENSSAUG00010014671) AR (ENSSAUG00010017493) OPHN1 (ENSSAUG00010017788) gjb1a (ENSSAUG00010017862) ENSSAUG00010017863 gja2 (ENSSAUG00010017864) tbc1d8b (ENSSAUG00010017869) ENSSAUG00010018027 npas2 (ENSSAUG00010018036) BRWD3 (ENSSAUG00010018048) #22 TENT5D (ENSSAUG00010018495) chmp1b (ENSSAUG00010018500) rraga (ENSSAUG00010018504) CNGA2 (ENSSAUG00010018859) pls3 (ENSSAUG00010018866) ENSSAUG00010019141 ccdc61 (ENSSAUG00010019150) ENSSAUG00010019154 ENSSAUG00010019156 ppm1nb (ENSSAUG00010019158) rtn2b (ENSSAUG00010019160) nectin3b (ENSSAUG00010019163) ENSSAUG00010019166 ppme1 (ENSSAUG00010019170) UCP3 (ENSSAUG00010019174) Perciformes ANCESTRAL SPECIES 22 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Perciformes_a ANCESTRAL SPECIES 20 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Pike perch MODERN SPECIES 37 msi2a (ENSSLUG00000021428) ENSSLUG00000021510 glra4b (ENSSLUG00000021515) ENSSLUG00000021523 aifm1 (ENSSLUG00000021611) tbc1d8b (ENSSLUG00000022999) gja2 (ENSSLUG00000023115) gjb1a (ENSSLUG00000023118) OPHN1 (ENSSLUG00000023131) AR (ENSSLUG00000023157) msna (ENSSLUG00000023208) ZC3H12B (ENSSLUG00000023727) amer1 (ENSSLUG00000023745) ENSSLUG00000023754 npas2 (ENSSLUG00000023767) BRWD3 (ENSSLUG00000023898) #22 ENSSLUG00000024228 chmp1b (ENSSLUG00000024231) rraga (ENSSLUG00000024238) CNGA2 (ENSSLUG00000024248) pls3 (ENSSLUG00000024284) ENSSLUG00000024344 ccdc61 (ENSSLUG00000024355) ENSSLUG00000024367 ENSSLUG00000024372 ppm1nb (ENSSLUG00000024380) rtn2b (ENSSLUG00000024386) nectin3b (ENSSLUG00000024391) ppme1 (ENSSLUG00000024399) ucp3 (ENSSLUG00000024409) ucp2 (ENSSLUG00000024417) Channel bull blenny MODERN SPECIES 5 gucy2d (ENSCGOG00000019513) ENSCGOG00000019899 slc12a9 (ENSCGOG00000019913) gnb2 (ENSCGOG00000019952) mink1 (ENSCGOG00000020972) PLD2 (ENSCGOG00000023947) chrne (ENSCGOG00000024199) gltpd2b (ENSCGOG00000024215) atp1b2b (ENSCGOG00000024218) ENSCGOG00000024224 mogat3b (ENSCGOG00000024228) srrt (ENSCGOG00000024250) ENSCGOG00000024294 ENSCGOG00000024296 npas2 (ENSCGOG00000024300) BRWD3 (ENSCGOG00000024317) #22 ENSCGOG00000024362 chmp1b (ENSCGOG00000024367) rraga (ENSCGOG00000024379) CNGA2 (ENSCGOG00000001610) pls3 (ENSCGOG00000001761) ENSCGOG00000003092 ccdc61 (ENSCGOG00000003222) ENSCGOG00000003237 ENSCGOG00000003247 ppm1nb (ENSCGOG00000003254) rtn2b (ENSCGOG00000003259) nectin3b (ENSCGOG00000003276) ENSCGOG00000003278 ppme1 (ENSCGOG00000003288) ucp3 (ENSCGOG00000003387) Cottioidei ANCESTRAL SPECIES 10 ENSGT00940000160414.d ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159451 ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 ENSGT01030000234513.B.a.d ENSGT00940000160157 ENSGT00940000155516.u ENSGT01090000260082.d.a.a.d ENSGT00940000159316 ENSGT00530000063529.B ENSGT00940000159803 ENSGT00390000005094.g ENSGT00940000164304 ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000166868.a ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000156028.t ENSGT00940000163093.a.a ENSGT00390000004396.g ENSGT00940000165592.b Lumpfish MODERN SPECIES 5 ENSCLMG00005020527 glra4b (ENSCLMG00005020526) aifm1 (ENSCLMG00005019575) tbc1d8b (ENSCLMG00005019549) gja2 (ENSCLMG00005019548) ENSCLMG00005019547 gjb1a (ENSCLMG00005019546) OPHN1 (ENSCLMG00005019542) AR (ENSCLMG00005019538) msna (ENSCLMG00005019528) ZC3H12B (ENSCLMG00005019519) amer1 (ENSCLMG00005019515) ENSCLMG00005019513 ENSCLMG00005019462 npas2 (ENSCLMG00005019449) BRWD3 (ENSCLMG00005019270) #22 ENSCLMG00005019268 chmp1b (ENSCLMG00005019262) rraga (ENSCLMG00005019261) CNGA2 (ENSCLMG00005019252) pls3 (ENSCLMG00005019222) ccdc61 (ENSCLMG00005019209) ENSCLMG00005019207 ppm1nb (ENSCLMG00005019203) rtn2b (ENSCLMG00005019197) nectin3b (ENSCLMG00005019188) ENSCLMG00005019183 ppme1 (ENSCLMG00005019180) ucp3 (ENSCLMG00005019178) ucp2 (ENSCLMG00005019177) dnajb13 (ENSCLMG00005019174) Stickleback MODERN SPECIES 7 ENSGACG00000020324 KDM6B (ENSGACG00000020325) glra4b (ENSGACG00000020326) aifm1 (ENSGACG00000020327) tbc1d8b (ENSGACG00000020328) gja2 (ENSGACG00000020329) gjb1a (ENSGACG00000020330) OPHN1 (ENSGACG00000020331) AR (ENSGACG00000020332) msna (ENSGACG00000020333) ZC3H12B (ENSGACG00000020334) ENSGACG00000020335 ENSGACG00000020336 ENSGACG00000020337 npas2 (ENSGACG00000020338) BRWD3 (ENSGACG00000020339) #22 ENSGACG00000020340 chmp1b (ENSGACG00000020341) rraga (ENSGACG00000020342) CNGA2 (ENSGACG00000020343) pls3 (ENSGACG00000020344) ENSGACG00000020345 ccdc61 (ENSGACG00000020346) ENSGACG00000020347 ENSGACG00000020348 ppm1nb (ENSGACG00000020349) rtn2b (ENSGACG00000020350) nectin3b (ENSGACG00000020351) ENSGACG00000020352 ppme1 (ENSGACG00000020353) ucp2 (ENSGACG00000020354) Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 30 GAB3 (ENSLBEG00000006473) amer1 (ENSLBEG00000006461) ZC3H12B (ENSLBEG00000006448) msna (ENSLBEG00000006335) ENSLBEG00000006308 ENSLBEG00000006283 ENSLBEG00000005273 OPHN1 (ENSLBEG00000005012) gjb1a (ENSLBEG00000004972) ENSLBEG00000004949 tbc1d8b (ENSLBEG00000004830) ENSLBEG00000004793 ENSLBEG00000004766 npas2 (ENSLBEG00000004731) ENSLBEG00000004703 ENSLBEG00000004609 #22 ENSLBEG00000004564 chmp1b (ENSLBEG00000004523) rraga (ENSLBEG00000004506) CNGA2 (ENSLBEG00000004471) pls3 (ENSLBEG00000004402) ENSLBEG00000004332 ccdc61 (ENSLBEG00000004190) ENSLBEG00000004045 ENSLBEG00000004006 ppm1nb (ENSLBEG00000003976) rtn2b (ENSLBEG00000003954) nectin3b (ENSLBEG00000003938) ENSLBEG00000003914 ppme1 (ENSLBEG00000003868) ucp3 (ENSLBEG00000003840) Ballan wrasse MODERN SPECIES 4526 ENSLBEG00000028968 ##22 ENSLBEG00000028969 #22 Protacanthopterygii ANCESTRAL SPECIES 11 ENSGT00940000156017.eb #21 ENSGT00980000199388 ENSGT00940000161206 ENSGT00950000183115.b.b ENSGT01100000263536.A.a.b ENSGT01100000263536.A.a.a ENSGT01040000240444.A.a.a.a.b ENSGT01100000263536.B.c.b ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 ENSGT00950000182915.a.b ENSGT00940000155374.g.b ENSGT00950000183097.a.a.a.f.a.b ENSGT00390000012030.b.a ENSGT00950000183107.a.b.b #22 ENSGT00940000162488.b.a ENSGT00950000182832.D.b ENSGT00950000183031.B ENSGT00940000167119 ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a ENSGT00940000155902.d ENSGT00990000203619.B.a.b ENSGT00940000154133.B ENSGT00940000160033.d ENSGT00940000175813 ENSGT00570000080851 ENSGT00390000003107.b.i ENSGT01080000257562 ENSGT00610000087474 Northern pike DUPLICATION Northern pike MODERN SPECIES 6 las1l (ENSELUG00000010702) ZC3H12B (ENSELUG00000010689) mtmr8 (ENSELUG00000010673) amer1 (ENSELUG00000010651) ENSELUG00000030517 ENSELUG00000000382 ENSELUG00000010552 smarca1 (ENSELUG00000010515) TENM1 (ENSELUG00000000375) agtr2 (ENSELUG00000010162) ENSELUG00000033753 #15 ENSELUG00000010102 ENSELUG00000009993 sh3bgrl (ENSELUG00000009941) #21 ENSELUG00000028905 #22 BRWD3 (ENSELUG00000009859) #22 TENT5D (ENSELUG00000026169) chmp1b (ENSELUG00000009678) rraga (ENSELUG00000009655) ENSELUG00000009623 CNGA2 (ENSELUG00000009608) pls3 (ENSELUG00000009594) ENSELUG00000000351 ENSELUG00000009509 ccdc61 (ENSELUG00000009476) ENSELUG00000009424 ENSELUG00000009408 ENSELUG00000009386 QPCTL (ENSELUG00000001370) ENSELUG00000009334 si:ch211-191j22.3 (ENSELUG00000031664) Northern pike MODERN SPECIES 6 msna (ENSELUG00000010743) las1l (ENSELUG00000010702) ZC3H12B (ENSELUG00000010689) mtmr8 (ENSELUG00000010673) amer1 (ENSELUG00000010651) ENSELUG00000030517 ENSELUG00000000382 ENSELUG00000010552 smarca1 (ENSELUG00000010515) TENM1 (ENSELUG00000000375) agtr2 (ENSELUG00000010162) ENSELUG00000033753 #15 ENSELUG00000010102 ENSELUG00000009993 sh3bgrl (ENSELUG00000009941) #21 ENSELUG00000028905 #22 BRWD3 (ENSELUG00000009859) #22 TENT5D (ENSELUG00000026169) chmp1b (ENSELUG00000009678) rraga (ENSELUG00000009655) ENSELUG00000009623 CNGA2 (ENSELUG00000009608) pls3 (ENSELUG00000009594) ENSELUG00000000351 ENSELUG00000009509 ccdc61 (ENSELUG00000009476) ENSELUG00000009424 ENSELUG00000009408 ENSELUG00000009386 QPCTL (ENSELUG00000001370) ENSELUG00000009334 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 38 ENSGT00940000159316.xb.a ENSGT00940000157443.c ENSGT00940000162717.b ENSGT00940000153902.b.a.b ENSGT00530000063529.B.a ENSGT00940000154103.b.f ENSGT00940000159803.n ENSGT00940000157297.n.b ENSGT01030000234566.e.b.b.b.a ENSGT00940000155920.l ENSGT01050000244888.b.a.c.a.b ENSGT00530000063666.a.gb #15 ENSGT00940000164237.g ENSGT00390000011425.A.d ENSGT00940000156017.eb.a.b #21 ENSGT00950000183107.a.b.b.q.a #22 ENSGT00940000162488.b.a.b ENSGT00950000182832.D.b.gc ENSGT00950000183031.B ENSGT00940000161737 ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a.a ENSGT00940000155902.d.c.a ENSGT00990000203619.B.a.b.a ENSGT00940000154133.B.e ENSGT00940000160033.d.c ENSGT00940000159183.v.a ENSGT00570000080851 ENSGT00390000003107.b.i.b ENSGT00940000177260.b ENSGT01080000257562.b Salmoninae_a ANCESTRAL SPECIES 24 ENSGT00940000159316.xb.a ENSGT00940000157443.c ENSGT00940000162717.b ENSGT00940000153902.b.a.b ENSGT00530000063529.B.a ENSGT00940000154103.b.f ENSGT00940000159803.n ENSGT00940000157297.n.b ENSGT01030000234566.e.b.b.b.a ENSGT00940000155920.l ENSGT01050000244888.b.a.c.a.b ENSGT00530000063666.a.gb #15 ENSGT00940000164237.g ENSGT00390000011425.A.d ENSGT00940000156017.eb.a.b #21 ENSGT00950000183107.a.b.b.q.a #22 ENSGT00940000162488.b.a.b ENSGT00950000182832.D.b.gc ENSGT00950000183031.B ENSGT00940000161737 ENSGT00950000183097.a.a.a.f.a.a.b ENSGT00940000155902.d.c.b ENSGT00990000203619.B.a.b.b ENSGT00940000154133.B.f ENSGT00940000160033.d.d ENSGT00940000159183.v.b ENSGT00940000175813 ENSGT00390000003107.b.i.a ENSGT00940000177260.a ENSGT01080000257562.a ENSGT00610000087474 Oncorhynchus ANCESTRAL SPECIES 21 ENSGT00390000014785 ENSGT00940000159316.xb.a ENSGT00940000157443.c ENSGT00940000162717.b ENSGT00530000063529.B.a ENSGT00940000154103.b.f ENSGT00940000159803.n ENSGT00940000157297.n.b ENSGT01030000234566.e.b.b.b.a ENSGT00940000155920.l ENSGT01050000244888.b.a.c.a.b ENSGT00530000063666.a.gb #15 ENSGT00940000164237.g ENSGT00390000011425.A.d ENSGT00940000156017.eb.a.b #21 ENSGT00950000183107.a.b.b.q.a #22 ENSGT00940000162488.b.a.b ENSGT00950000182832.D.b.gc ENSGT00950000183031.B ENSGT00940000162863 ENSGT00950000183097.a.a.a.f.a.a.b ENSGT00940000155902.d.c.b ENSGT00990000203619.B.a.b.b ENSGT00940000154133.B.f ENSGT00940000160033.d.d ENSGT00940000159183.v.b ENSGT00940000175813 ENSGT00390000003107.b.i.a ENSGT00940000177260.a ENSGT01080000257562.a ENSGT00610000087474 Oncorhynchus_a ANCESTRAL SPECIES 19 ENSGT00390000014785 ENSGT00940000159316.xb.a ENSGT00940000157443.c ENSGT00940000162717.b ENSGT00530000063529.B.a ENSGT00940000154103.b.f ENSGT00940000159803.n ENSGT00940000157297.n.b ENSGT01030000234566.e.b.b.b.a ENSGT00940000155920.l ENSGT01050000244888.b.a.c.a.b ENSGT00530000063666.a.gb #15 ENSGT00940000164237.g ENSGT00390000011425.A.d ENSGT00940000156017.eb.a.b #21 ENSGT00950000183107.a.b.b.q.a #22 ENSGT00940000162488.b.a.b ENSGT00950000182832.D.b.gc ENSGT00950000183031.B ENSGT00940000162863 ENSGT00950000183097.a.a.a.f.a.a.b ENSGT00940000155902.d.c.b ENSGT00990000203619.B.a.b.b ENSGT00940000154133.B.f ENSGT00940000160033.d.d ENSGT00940000159183.v.b ENSGT00940000175813 ENSGT00390000003107.b.i.a ENSGT00940000177260.a ENSGT01080000257562.a ENSGT00610000087474 Coho salmon MODERN SPECIES 26 ENSOKIG00005049862 msna (ENSOKIG00005049926) las1l (ENSOKIG00005050112) ZC3H12B (ENSOKIG00005050116) shisa2a (ENSOKIG00005050119) ENSOKIG00005050122 amer1 (ENSOKIG00005050127) ARHGEF9 (ENSOKIG00005050164) ENSOKIG00005050220 smarca1 (ENSOKIG00005050230) TENM1 (ENSOKIG00005050305) sh2d1aa (ENSOKIG00005050371) ENSOKIG00005050392 ENSOKIG00005050425 SH3BGRL (ENSOKIG00005050429) #21 BRWD3 (ENSOKIG00005050476) #22 TENT5D (ENSOKIG00005050501) CHMP1B (ENSOKIG00005050507) rraga (ENSOKIG00005050509) ENSOKIG00005050517 PLS3 (ENSOKIG00005050534) ENSOKIG00005050561 ENSOKIG00005050564 ENSOKIG00005050567 ccdc61 (ENSOKIG00005050572) ENSOKIG00005050576 ENSOKIG00005050579 QPCTL (ENSOKIG00005050582) ENSOKIG00005050588 si:ch211-191j22.3 (ENSOKIG00005050591) ENSOKIG00005050597 Chinook salmon MODERN SPECIES 33 las1l (ENSOTSG00005027734) ZC3H12B (ENSOTSG00005027736) shisa2a (ENSOTSG00005027737) amer1 (ENSOTSG00005001140) arhgef9b (ENSOTSG00005001039) ENSOTSG00005001142 smarca1 (ENSOTSG00005001182) TENM1 (ENSOTSG00005001397) ENSOTSG00005009257 ENSOTSG00005009258 agtr2 (ENSOTSG00005009260) apool (ENSOTSG00005009261) #15 ENSOTSG00005009267 ENSOTSG00005009440 sh3bgrl (ENSOTSG00005009441) #21 BRWD3 (ENSOTSG00005009448) #22 TENT5D (ENSOTSG00005012086) chmp1b (ENSOTSG00005012087) rraga (ENSOTSG00005012090) PLS3 (ENSOTSG00005012096) ENSOTSG00005012255 ccdc61 (ENSOTSG00005012260) ENSOTSG00005012263 ENSOTSG00005012266 ENSOTSG00005012268 QPCTL (ENSOTSG00005012271) ENSOTSG00005012273 ENSOTSG00005012275 si:ch211-191j22.3 (ENSOTSG00005012276) ENSOTSG00005012279 ENSOTSG00005012280 Salmo ANCESTRAL SPECIES 13 ENSGT00390000014785 ENSGT00940000159316.xb.a ENSGT00940000157443.c ENSGT00940000153902.b.a.b ENSGT00530000063529.B.a ENSGT00940000154103.b.f ENSGT00940000159803.n ENSGT00940000157297.n.b ENSGT01030000234566.e.b.b.b.a ENSGT00940000155920.l ENSGT01050000244888.b.a.c.a.b ENSGT00530000063666.a.gb #15 ENSGT00940000164237.g ENSGT00390000011425.A.d ENSGT00940000156017.eb.a.b #21 ENSGT00950000183107.a.b.b.q.a #22 ENSGT00940000162488.b.a.b ENSGT00950000182832.D.b.gc ENSGT00950000183031.B ENSGT00940000161737 ENSGT00950000183097.a.a.a.f.a.a.b ENSGT00940000155902.d.c.b ENSGT00990000203619.B.a.b.b ENSGT00940000154133.B.f ENSGT00940000160033.d.d ENSGT00940000159183.v.b ENSGT00390000003107.b.i.a ENSGT01080000257562.a ENSGT00610000087474 ENSGT00940000166868.a.f ENSGT00940000164695.b.f River trout MODERN SPECIES 6 ZC3H12B (ENSSTUG00000024895) shisa2a (ENSSTUG00000024888) ENSSTUG00000024883 asb12a (ENSSTUG00000024880) amer1 (ENSSTUG00000024872) ARHGEF9 (ENSSTUG00000023916) ENSSTUG00000023870 smarca1 (ENSSTUG00000023581) TENM1 (ENSSTUG00000023466) sh2d1aa (ENSSTUG00000023451) agtr2 (ENSSTUG00000023443) apool (ENSSTUG00000023431) #15 ENSSTUG00000023313 ENSSTUG00000023305 sh3bgrl (ENSSTUG00000023208) #21 BRWD3 (ENSSTUG00000022462) #22 TENT5D (ENSSTUG00000022443) chmp1b (ENSSTUG00000021989) rraga (ENSSTUG00000021952) nup62l (ENSSTUG00000021905) PLS3 (ENSSTUG00000019482) ATRX (ENSSTUG00000019370) ENSSTUG00000019364 ccdc61 (ENSSTUG00000019310) ENSSTUG00000019296 ENSSTUG00000019282 QPCTL (ENSSTUG00000019277) ENSSTUG00000019267 si:ch211-191j22.3 (ENSSTUG00000019261) ENSSTUG00000019253 ppm1nb (ENSSTUG00000019240) Huchen MODERN SPECIES 2 shisa2a (ENSHHUG00000016042) mtmr8 (ENSHHUG00000016052) amer1 (ENSHHUG00000016089) ARHGEF9 (ENSHHUG00000016097) ENSHHUG00000016217 smarca1 (ENSHHUG00000016236) TENM1 (ENSHHUG00000016311) sh2d1aa (ENSHHUG00000016945) ENSHHUG00000016955 ENSHHUG00000016965 ENSHHUG00000016969 ENSHHUG00000016973 ENSHHUG00000016976 ENSHHUG00000016979 sh3bgrl (ENSHHUG00000016983) #21 ENSHHUG00000017069 #22 ENSHHUG00000017162 chmp1b (ENSHHUG00000017165) rraga (ENSHHUG00000017302) ENSHHUG00000017324 PLS3 (ENSHHUG00000017418) ENSHHUG00000017923 ENSHHUG00000017954 ccdc61 (ENSHHUG00000017958) ENSHHUG00000017970 ENSHHUG00000017977 QPCTL (ENSHHUG00000017984) ENSHHUG00000017991 ENSHHUG00000017994 si:ch211-191j22.3 (ENSHHUG00000017995) ENSHHUG00000018000 Salmoninae ANCESTRAL SPECIES 690 ENSGT00940000160622.`b.b ENSGT00940000159803.m ENSGT00940000157297.n.a ENSGT01030000234566.e.b.b.b.b ENSGT01000000217261 ENSGT01050000244888.b.a.c.a.a ENSGT00530000063666.a.fb #15 ENSGT00940000164237.h ENSGT00390000011425.A.c ENSGT00940000156017.eb.a.a #21 ENSGT00950000183107.a.b.b.q.b #22 ENSGT00940000162488.b.a.a ENSGT00950000182832.D.b.fc Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00990000212008 ENSGT00940000159316.xb.b ENSGT00940000162717.a ENSGT00940000153902.b.a.a ENSGT00530000063529.B.b ENSGT00940000160622.`b.b ENSGT00940000159803.m ENSGT00940000157297.n.a ENSGT01030000234566.e.b.b.b.b ENSGT01000000217261 ENSGT01050000244888.b.a.c.a.a ENSGT00530000063666.a.fb #15 ENSGT00940000164237.h ENSGT00390000011425.A.c ENSGT00940000156017.eb.a.a #21 ENSGT00950000183107.a.b.b.q.b #22 ENSGT00940000162488.b.a.a ENSGT00950000182832.D.b.fc ENSGT00940000167119 ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a.a ENSGT00940000155902.d.c.a ENSGT00990000203619.B.a.b.a ENSGT00940000154133.B.e ENSGT00940000160033.d.c ENSGT00940000159183.v.a ENSGT00570000080851 ENSGT00390000003107.b.i.b ENSGT01080000257562.b ENSGT00940000166868.a.e ENSGT00940000164695.b.e Oncorhynchus ANCESTRAL SPECIES 4 ENSGT01090000260082.d.a.a.d.c ENSGT00940000159316.xb.b ENSGT00940000162717.a ENSGT00940000153902.b.a.a ENSGT00530000063529.B.b ENSGT00940000160622.`b.b ENSGT00940000159803.m ENSGT00940000157297.n.a ENSGT01030000234566.e.b.b.b.b ENSGT01000000217261 ENSGT01050000244888.b.a.c.a.a ENSGT00530000063666.a.fb #15 ENSGT00940000164237.h ENSGT00390000011425.A.c ENSGT00940000156017.eb.a.a #21 ENSGT00950000183107.a.b.b.q.b #22 ENSGT00940000162488.b.a.a ENSGT00950000182832.D.b.fc ENSGT00940000161737 ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a.a ENSGT00940000155902.d.c.a ENSGT00990000203619.B.a.b.a ENSGT00940000159183.v.a ENSGT00570000080851 ENSGT00390000003107.b.i.b ENSGT01080000257562.b ENSGT00940000166868.a.e ENSGT00940000164695.b.e ENSGT00940000160599.s ENSGT00940000159399.c.a.a Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000166318.b ENSGT01090000260082.d.a.a.d.c ENSGT00940000159316.xb.b ENSGT00940000162717.a ENSGT00530000063529.B.b ENSGT00940000160622.`b.b ENSGT00940000159803.m ENSGT00940000157297.n.a ENSGT01030000234566.e.b.b.b.b ENSGT01000000217261.a ENSGT01050000244888.b.a.c.a.a ENSGT00530000063666.a.fb #15 ENSGT00940000164237.h ENSGT00390000011425.A.c ENSGT00940000156017.eb.a.a #21 ENSGT00950000183107.a.b.b.q.b #22 ENSGT00940000162488.b.a.a ENSGT00950000182832.D.b.fc ENSGT00940000161737 ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a.a ENSGT00940000155902.d.c.a ENSGT00940000159183.v.a ENSGT00570000080851 ENSGT00390000003107.b.i.b ENSGT01080000257562.b ENSGT00940000166868.a.e ENSGT00940000164695.b.e ENSGT00940000160599.s ENSGT00940000159399.c.a.a ENSGT00940000156028.t.f Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 23 ENSOTSG00005012662 ENSOTSG00005012660 fdx1b (ENSOTSG00005012659) msna (ENSOTSG00005010803) ZC3H12B (ENSOTSG00005010795) mtmr8 (ENSOTSG00005010760) amer1 (ENSOTSG00005010752) ENSOTSG00005010656 ENSOTSG00005010654 smarca1 (ENSOTSG00005010526) TENM1 (ENSOTSG00005009078) apool (ENSOTSG00005009076) #15 ENSOTSG00005009047 ENSOTSG00005009046 sh3bgrl (ENSOTSG00005047699) #21 BRWD3 (ENSOTSG00005047698) #22 TENT5D (ENSOTSG00005047694) chmp1b (ENSOTSG00005047693) nup62l (ENSOTSG00005047691) CNGA2 (ENSOTSG00005047688) PLS3 (ENSOTSG00005047468) sec61b (ENSOTSG00005047458) ENSOTSG00005047457 ATRX (ENSOTSG00005047455) ENSOTSG00005047454 ENSOTSG00005047453 ENSOTSG00005047452 ENSOTSG00005047451 QPCTL (ENSOTSG00005047449) ENSOTSG00005047448 ENSOTSG00005047447 Chinook salmon MODERN SPECIES 29 ENSOTSG00005039487 fdx1b (ENSOTSG00005039484) msna (ENSOTSG00005036412) ZC3H12B (ENSOTSG00005036404) amer1 (ENSOTSG00005036403) mtmr8 (ENSOTSG00005035677) ENSOTSG00005035661 smarca1 (ENSOTSG00005035550) TENM1 (ENSOTSG00005035119) ENSOTSG00005035101 agtr2 (ENSOTSG00005035099) apool (ENSOTSG00005035098) #15 ENSOTSG00005034906 ENSOTSG00005034905 SH3BGRL (ENSOTSG00005034904) #21 BRWD3 (ENSOTSG00005034291) #22 TENT5D (ENSOTSG00005034229) chmp1b (ENSOTSG00005034220) nup62l (ENSOTSG00005034216) CNGA2 (ENSOTSG00005034214) pls3 (ENSOTSG00005028264) ATRX (ENSOTSG00005026108) ENSOTSG00005026100 ENSOTSG00005026099 ENSOTSG00005026098 ENSOTSG00005026097 ENSOTSG00005026096 ENSOTSG00005026095 ppm1nb (ENSOTSG00005026094) rtn2b (ENSOTSG00005026093) RAB4B (ENSOTSG00005026092) Coho salmon MODERN SPECIES 20 ENSOKIG00005049857 fdx1b (ENSOKIG00005049865) ZC3H12B (ENSOKIG00005049869) mtmr8 (ENSOKIG00005024659) amer1 (ENSOKIG00005025000) ENSOKIG00005025069 ENSOKIG00005025305 smarca1 (ENSOKIG00005025406) TENM1 (ENSOKIG00005026059) ENSOKIG00005026960 agtr2 (ENSOKIG00005026971) apool (ENSOKIG00005026984) #15 ENSOKIG00005027024 ENSOKIG00005027264 SH3BGRL (ENSOKIG00005027278) #21 BRWD3 (ENSOKIG00005027453) #22 TENT5D (ENSOKIG00005028714) chmp1b (ENSOKIG00005028736) ENSOKIG00005028840 CNGA2 (ENSOKIG00005028859) pls3 (ENSOKIG00005028923) ATRX (ENSOKIG00005029656) ENSOKIG00005030543 ENSOKIG00005030562 ENSOKIG00005030581 ENSOKIG00005030592 ENSOKIG00005030616 QPCTL (ENSOKIG00005030642) ENSOKIG00005030678 ppm1nb (ENSOKIG00005030691) rtn2b (ENSOKIG00005030707) Salmo ANCESTRAL SPECIES 17 ENSGT01090000260082.d.a.a.d.c ENSGT00990000212008 ENSGT00940000159316.xb.b ENSGT00940000162717.a ENSGT00940000153902.b.a.a ENSGT00530000063529.B.b ENSGT00940000160622.`b.b ENSGT00940000159803.m ENSGT00940000157297.n.a ENSGT01030000234566.e.b.b.b.b ENSGT01050000244888.b.a.c.a.a ENSGT00530000063666.a.fb #15 ENSGT00940000164237.h ENSGT00390000011425.A.c ENSGT00940000156017.eb.a.a #21 ENSGT00950000183107.a.b.b.q.b #22 ENSGT00940000162488.b.a.a ENSGT00950000182832.D.b.fc ENSGT00940000167119 ENSGT00940000155374.g.a ENSGT00950000183097.a.a.a.f.a.a.a ENSGT00940000155902.d.c.a ENSGT00990000203619.B.a.b.a ENSGT00940000154133.B.e ENSGT00940000160033.d.c ENSGT00940000159183.v.a ENSGT00570000080851 ENSGT00390000003107.b.i.b ENSGT01080000257562.b ENSGT00940000166868.a.e ENSGT00940000164695.b.e River trout MODERN SPECIES 10 ENSSTUG00000036223 msna (ENSSTUG00000035688) ZC3H12B (ENSSTUG00000035649) mtmr8 (ENSSTUG00000035627) asb12a (ENSSTUG00000035616) amer1 (ENSSTUG00000035608) ENSSTUG00000034069 ENSSTUG00000034001 smarca1 (ENSSTUG00000033406) TENM1 (ENSSTUG00000032523) agtr2 (ENSSTUG00000032460) apool (ENSSTUG00000032420) #15 ENSSTUG00000032150 ENSSTUG00000032128 sh3bgrl (ENSSTUG00000032098) #21 BRWD3 (ENSSTUG00000029632) #22 TENT5D (ENSSTUG00000029575) chmp1b (ENSSTUG00000029498) ENSSTUG00000029472 CNGA2 (ENSSTUG00000029087) pls3 (ENSSTUG00000025373) ENSSTUG00000025266 ATRX (ENSSTUG00000023778) ENSSTUG00000023738 ccdc61 (ENSSTUG00000023723) ENSSTUG00000023713 ENSSTUG00000023708 QPCTL (ENSSTUG00000023694) ENSSTUG00000023689 ENSSTUG00000023650 ppm1nb (ENSSTUG00000023615) Huchen MODERN SPECIES 104 msna (ENSHHUG00000015857) ZC3H12B (ENSHHUG00000017594) mtmr8 (ENSHHUG00000017600) asb12a (ENSHHUG00000017663) amer1 (ENSHHUG00000017678) ENSHHUG00000017683 ENSHHUG00000017768 smarca1 (ENSHHUG00000017787) TENM1 (ENSHHUG00000017982) ENSHHUG00000018879 agtr2 (ENSHHUG00000018882) apool (ENSHHUG00000018887) #15 ENSHHUG00000018894 ENSHHUG00000018917 sh3bgrl (ENSHHUG00000018931) #21 ENSHHUG00000018982 #22 TENT5D (ENSHHUG00000019177) chmp1b (ENSHHUG00000019183) rraga (ENSHHUG00000019315) ENSHHUG00000019337 CNGA2 (ENSHHUG00000019376) pls3 (ENSHHUG00000019584) ENSHHUG00000020617 CYSLTR2 (ENSHHUG00000020696) ccdc61 (ENSHHUG00000020700) ENSHHUG00000020713 ENSHHUG00000020721 ENSHHUG00000020732 QPCTL (ENSHHUG00000020754) ENSHHUG00000020800 ENSHHUG00000020808 Salmoninae ANCESTRAL SPECIES ENSGT00950000183107.a.b.b.r #22 Huchen MODERN SPECIES 4106 ENSHHUG00000016390 ##22 ENSHHUG00000016383 #22 ENSHHUG00000016380 ENSHHUG00000016371 Otomorpha ANCESTRAL SPECIES 751 ENSGT00950000183107.a.b.b #22 ENSGT00940000155374.g.a Clupeiformes ANCESTRAL SPECIES 300 ENSGT00950000183107.a.b.b #22 ENSGT00940000155374.g.a ENSGT00940000155902.d ENSGT00940000158214.d ENSGT01020000230412.D.a.a.b ENSGT00940000161362 ENSGT00730000111220 ENSGT00940000165703 ENSGT00390000002414 ENSGT00990000205544 ENSGT00940000155242 ENSGT00940000163331.a.a ENSGT00940000155128.a.a.b ENSGT00390000006915.c.d.b ENSGT00940000167278 ENSGT00940000156123.b.a Atlantic herring MODERN SPECIES 24 camlg (ENSCHAG00000023398) ZC3H12B (ENSCHAG00000023376) zc4h2 (ENSCHAG00000023355) shisa2a (ENSCHAG00000023350) mtmr8 (ENSCHAG00000023277) asb12a (ENSCHAG00000023243) amer1 (ENSCHAG00000023237) ENSCHAG00000022682 ENSCHAG00000022655 smarca1 (ENSCHAG00000021368) TENM1 (ENSCHAG00000020629) agtr2 (ENSCHAG00000020604) ENSCHAG00000020598 ENSCHAG00000020382 apool (ENSCHAG00000020365) #15 BRWD3 (ENSCHAG00000019126) #22 chmp1b (ENSCHAG00000018937) CNGA2 (ENSCHAG00000018572) zdhhc15a (ENSCHAG00000018387) uprt (ENSCHAG00000018322) nalf2 (ENSCHAG00000018314) ENSCHAG00000018298 eda (ENSCHAG00000018290) wnt11f2 (ENSCHAG00000018281) igbp1 (ENSCHAG00000018271) zgc:158432 (ENSCHAG00000018262) taf1 (ENSCHAG00000013156) rhogc (ENSCHAG00000013005) ENSCHAG00000012993 plp1b (ENSCHAG00000012955) nlgn3b (ENSCHAG00000012918) Denticle herring MODERN SPECIES 16 ZC3H12B (ENSDCDG00000032570) zc4h2 (ENSDCDG00000032573) shisa2a (ENSDCDG00000032575) mtmr8 (ENSDCDG00000032582) asb12a (ENSDCDG00000032601) amer1 (ENSDCDG00000032602) ENSDCDG00000032603 ENSDCDG00000032618 smarca1 (ENSDCDG00000032651) TENM1 (ENSDCDG00000033349) sh2d1aa (ENSDCDG00000034442) agtr2 (ENSDCDG00000034444) apool (ENSDCDG00000034445) #15 ENSDCDG00000034449 ENSDCDG00000034455 BRWD3 (ENSDCDG00000034472) #22 chmp1b (ENSDCDG00000034548) CNGA2 (ENSDCDG00000034552) ENSDCDG00000034554 zdhhc15a (ENSDCDG00000034568) uprt (ENSDCDG00000034585) nalf2 (ENSDCDG00000034587) eda (ENSDCDG00000034589) wnt11f2 (ENSDCDG00000034597) igbp1 (ENSDCDG00000034610) taf1 (ENSDCDG00000034641) rhogc (ENSDCDG00000034740) ENSDCDG00000034742 ENSDCDG00000034744 plp1b (ENSDCDG00000034748) nlgn3b (ENSDCDG00000034752) Otophysi ANCESTRAL SPECIES 93 ENSGT00940000155478.hb.b ENSGT00510000048626 ENSGT00940000155573.g.b ENSGT00950000183079.A.b.c.b ENSGT00980000198690 ENSGT00940000161656 ENSGT00940000166502 ENSGT00940000156455 ENSGT01070000253816.a.b ENSGT00940000154442 ENSGT00660000097471 ENSGT00940000164304 ENSGT00390000005094.g ENSGT00770000121762 ENSGT00980000199388 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000155374.g.a ENSGT00940000156506.a ENSGT00730000111354 ENSGT00940000158958 Cyprinoidei ANCESTRAL SPECIES 16 ENSGT00940000161656 ENSGT00940000166502 ENSGT00940000156455 ENSGT01070000253816.a.b ENSGT00940000160994.h ENSGT00940000154442 ENSGT00660000097471 ENSGT00940000160515 ENSGT00390000017980 ENSGT00940000164304 ENSGT00390000005094.g ENSGT00530000063666.a #15 ENSGT00940000164237 ENSGT00770000121762 ENSGT00980000199388 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000155374.g.a ENSGT00940000155902.d ENSGT00940000158214.d ENSGT01020000230412.D.a.a.b ENSGT00940000156506.a.a ENSGT00940000153110.D ENSGT00730000111354 ENSGT00940000158958 ENSGT01050000244888.b.a.c.a ENSGT00390000006915.c.d.b ENSGT00940000167278 ENSGT00940000156123.b.a ENSGT00940000153251.b.a ENSGT00950000182972.a.a.a.a.a.f Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 31 ENSGT00980000198660.a.a ENSGT00940000164220.b.b.d ENSGT00980000198690.d ENSGT00940000161656 ENSGT00940000166502.b ENSGT00940000156455.a ENSGT01070000253816.a.b ENSGT00940000154442.id ENSGT00660000097471.b ENSGT00940000160515.d ENSGT00390000017980.o ENSGT00940000164304.f ENSGT00390000005094.g.m.b ENSGT00530000063666.a.y #15 ENSGT00940000164237.l ENSGT00950000183107.a.b.b.s #22 ENSGT00950000182832.D.b.nc ENSGT00940000155374.g.a.f ENSGT00940000155902.d.a ENSGT00940000158214.d.b ENSGT01020000230412.D.a.a.b.b ENSGT00940000159746.j.a ENSGT00940000156506.a.a.b ENSGT00940000153110.D ENSGT00730000111354.d ENSGT00940000158958.d ENSGT01050000244888.b.a.c.a.g ENSGT00390000006915.c.d.b.a ENSGT00940000167278.g ENSGT00940000156123.b.a.b ENSGT00940000169200 Goldfish MODERN SPECIES 3271 msna (ENSCARG00000061880) ENSCARG00000061817 ENSCARG00000061812 GPR83 (ENSCARG00000061794) ENSCARG00000061786 RPL36AL (ENSCARG00000061757) glra4b (ENSCARG00000061748) aifm1 (ENSCARG00000070066) tnfsf10l4 (ENSCARG00000070042) nono (ENSCARG00000070037) mtnr1c (ENSCARG00000070026) vma21 (ENSCARG00000070022) npas2 (ENSCARG00000070014) apool (ENSCARG00000070006) #15 ENSCARG00000070003 BRWD3 (ENSCARG00000069886) #22 chmp1b (ENSCARG00000069838) CNGA2 (ENSCARG00000069819) zdhhc15a (ENSCARG00000069804) uprt (ENSCARG00000069801) NEXMIF (ENSCARG00000069798) prps1a (ENSCARG00000069788) tbx5b (ENSCARG00000069785) ENSCARG00000069782 ENSCARG00000069780 TPCN1 (ENSCARG00000069772) agtr2 (ENSCARG00000069768) plp1b (ENSCARG00000069765) nlgn3b (ENSCARG00000069762) gria3a (ENSCARG00000069714) stag2a (ENSCARG00000069525) Cyprininae_a ANCESTRAL SPECIES ENSGT00980000198660.a.a.b ENSGT00940000164220.b.b.d ENSGT00980000198690.d ENSGT00940000161656 ENSGT00940000166502.b ENSGT00940000156455.a ENSGT01070000253816.a.b ENSGT00940000154442.id ENSGT00660000097471.b ENSGT00940000160515.d ENSGT00390000017980.o ENSGT00940000164304.f ENSGT00390000005094.g.m.b ENSGT00530000063666.a.y #15 ENSGT00940000164237.l ENSGT00950000183107.a.b.b.s #22 ENSGT00950000182832.D.b.nc ENSGT00940000155374.g.a.f ENSGT00940000155902.d.a.a ENSGT00940000158214.d.b ENSGT01020000230412.D.a.a.b.b ENSGT00940000159746.j.a ENSGT00940000156506.a.a.b ENSGT00940000153110.D ENSGT00730000111354.d ENSGT00940000158958.d ENSGT01050000244888.b.a.c.a.g ENSGT00390000006915.c.d.b.a ENSGT00940000167278.g ENSGT00940000156123.b.a.b ENSGT00940000169200 Common carp reference MODERN SPECIES 7 ENSCCRG00000059509 ENSCCRG00000052994 rpl36a (ENSCCRG00000051128) glra4b (ENSCCRG00000051127) aifm1 (ENSCCRG00000019418) tnfsf10l4 (ENSCCRG00000019383) nono (ENSCCRG00000070158) mtnr1c (ENSCCRG00000063256) vma21 (ENSCCRG00000048634) npas2 (ENSCCRG00000026695) ENSCCRG00000057416 apool (ENSCCRG00000026701) #15 ENSCCRG00000077866 ENSCCRG00000026711 ENSCCRG00000081116 ENSCCRG00000026847 #22 chmp1b (ENSCCRG00000078600) ENSCCRG00000031177 ENSCCRG00000082102 zdhhc15a (ENSCCRG00000027419) uprt (ENSCCRG00000027414) NEXMIF (ENSCCRG00000055372) ENSCCRG00000056488 tbx5b (ENSCCRG00000027406) CFAP73 (ENSCCRG00000027402) IQCD (ENSCCRG00000027398) TPCN1 (ENSCCRG00000026682) agtr2 (ENSCCRG00000055075) plp1b (ENSCCRG00000051482) nlgn3b (ENSCCRG00000080152) gria3a (ENSCCRG00000037188) Golden-line barbel MODERN SPECIES 999 ENSSGRG00000036173 ENSSGRG00000036174 ENSSGRG00000036178 rpl36a (ENSSGRG00000036181) glra4b (ENSSGRG00000036183) aifm1 (ENSSGRG00000036219) tnfsf10l4 (ENSSGRG00000037630) nono (ENSSGRG00000037632) zgc:113208 (ENSSGRG00000037635) mtnr1c (ENSSGRG00000037636) vma21 (ENSSGRG00000037637) npas2 (ENSSGRG00000037644) apool (ENSSGRG00000037683) #15 ENSSGRG00000037684 ENSSGRG00000037686 BRWD3 (ENSSGRG00000037690) #22 chmp1b (ENSSGRG00000037706) Cyprininae ANCESTRAL SPECIES 50 ENSGT00940000154336.cd ENSGT00940000162079.m ENSGT00940000164220.b.b.c.b ENSGT00980000198690.c ENSGT00940000166502.a ENSGT00940000156455.b ENSGT00940000160994.h ENSGT00940000154442.hd ENSGT00660000097471.a ENSGT00940000160515.c ENSGT00390000017980.p ENSGT00940000164304.e ENSGT00390000005094.g.m.a ENSGT00530000063666.a.z #15 ENSGT00940000164237.k ENSGT00950000183107.a.b.b.t #22 ENSGT00950000182832.D.b.oc ENSGT00940000155374.g.a.e ENSGT00940000155902.d.b ENSGT00940000158214.d.a ENSGT01020000230412.D.a.a.b.a ENSGT00940000159746.j.b ENSGT00940000156506.a.a.a ENSGT00730000111354.c ENSGT00940000158958.c ENSGT01050000244888.b.a.c.a.h ENSGT00390000006915.c.d.b.b ENSGT00940000167278.h ENSGT00940000156123.b.a.a ENSGT00940000153251.b.a ENSGT00950000182972.a.a.a.a.a.f.g Goldfish MODERN SPECIES 23 ENSCARG00000062350 ENSCARG00000062320 rpl36a (ENSCARG00000062271) glra4b (ENSCARG00000062179) aifm1 (ENSCARG00000058306) casp22 (ENSCARG00000058214) nono (ENSCARG00000058178) zgc:113208 (ENSCARG00000058165) MEL1c (ENSCARG00000058151) vma21 (ENSCARG00000058119) npas2 (ENSCARG00000058081) ENSCARG00000058056 apool (ENSCARG00000058031) #15 ENSCARG00000058002 ENSCARG00000057977 BRWD3 (ENSCARG00000051277) #22 chmp1b (ENSCARG00000050810) CNGA2 (ENSCARG00000050769) ENSCARG00000050752 zdhhc15a (ENSCARG00000050733) uprt (ENSCARG00000050680) NEXMIF (ENSCARG00000050647) tbx5b (ENSCARG00000050208) ENSCARG00000050157 TPCN1 (ENSCARG00000049377) agtr2 (ENSCARG00000049332) plp1b (ENSCARG00000049225) nlgn3b (ENSCARG00000049144) gria3a (ENSCARG00000048180) stag2a (ENSCARG00000047490) acsl4b (ENSCARG00000047318) Cyprininae_a ANCESTRAL SPECIES 42 ENSGT00940000154336.cd ENSGT00940000162079.m ENSGT00940000164220.b.b.c.b ENSGT00980000198690.c ENSGT00940000166502.a ENSGT00940000156455.b ENSGT00940000160994.h ENSGT00940000154442.hd ENSGT00660000097471.a ENSGT00940000160515.c ENSGT00390000017980.p ENSGT00940000164304.e ENSGT00390000005094.g.m.a ENSGT00530000063666.a.z #15 ENSGT00940000164237.k ENSGT00950000183107.a.b.b.t #22 ENSGT00950000182832.D.b.oc ENSGT00940000155374.g.a.e ENSGT00940000155902.d.b ENSGT00940000158214.d.a ENSGT01020000230412.D.a.a.b.a ENSGT00940000159746.j.b ENSGT00950000182803.B.d.a.n ENSGT00940000156506.a.a.a ENSGT00730000111354.c ENSGT00940000158958.c ENSGT01050000244888.b.a.c.a.h ENSGT00390000006915.c.d.b.b ENSGT00940000167278.h ENSGT00940000156123.b.a.a ENSGT00940000153251.b.a Common carp reference MODERN SPECIES 15 ENSCCRG00000056125 ENSCCRG00000069253 ENSCCRG00000057065 ENSCCRG00000072055 glra4b (ENSCCRG00000008120) aifm1 (ENSCCRG00000005144) ENSCCRG00000000117 nono (ENSCCRG00000019374) zgc:113208 (ENSCCRG00000027192) mtnr1c (ENSCCRG00000027189) vma21 (ENSCCRG00000055531) npas2 (ENSCCRG00000026033) ENSCCRG00000026054 apool (ENSCCRG00000026064) #15 ENSCCRG00000026076 ENSCCRG00000082116 #22 chmp1b (ENSCCRG00000031170) ENSCCRG00000081691 ENSCCRG00000058494 zdhhc15a (ENSCCRG00000061709) uprt (ENSCCRG00000072923) NEXMIF (ENSCCRG00000063365) ENSCCRG00000066923 tbx5b (ENSCCRG00000053260) ENSCCRG00000008764 ENSCCRG00000008365 agtr2 (ENSCCRG00000071870) plp1b (ENSCCRG00000008315) gria3a (ENSCCRG00000035742) ENSCCRG00000035665 stag2a (ENSCCRG00000035644) Golden-line barbel MODERN SPECIES 229 fdx1b (ENSSGRG00000022938) GPR83 (ENSSGRG00000022935) ENSSGRG00000022934 ENSSGRG00000022927 ENSSGRG00000022926 glra4b (ENSSGRG00000022903) aifm1 (ENSSGRG00000021572) casp22 (ENSSGRG00000021542) nono (ENSSGRG00000021541) zgc:113208 (ENSSGRG00000021540) ENSSGRG00000021539 vma21 (ENSSGRG00000021538) npas2 (ENSSGRG00000021536) ENSSGRG00000021535 ENSSGRG00000021292 BRWD3 (ENSSGRG00000019125) #22 CNGA2 (ENSSGRG00000019081) ENSSGRG00000019078 zdhhc15a (ENSSGRG00000019075) ENSSGRG00000019074 NEXMIF (ENSSGRG00000019073) ENSSGRG00000019072 ENSSGRG00000019071 tbx5b (ENSSGRG00000019069) ENSSGRG00000019068 TPCN1 (ENSSGRG00000019067) agtr2 (ENSSGRG00000019066) plp1b (ENSSGRG00000019042) nlgn3b (ENSSGRG00000019040) gria3a (ENSSGRG00000018122) stag2a (ENSSGRG00000015325) Zebrafish MODERN SPECIES 20 rpl36a (ENSDARG00000058105) glra4b (ENSDARG00000058103) aifm1 (ENSDARG00000058088) tnfsf10l4 (ENSDARG00000058068) casp22 (ENSDARG00000091926) nono (ENSDARG00000020482) zgc:113208 (ENSDARG00000035610) mtnr1c (ENSDARG00000035609) vma21 (ENSDARG00000093945) npas2 (ENSDARG00000016536) ENSDARG00000010331 apool (ENSDARG00000039374) #15 ENSDARG00000075491 ENSDARG00000094025 hmgn7 (ENSDARG00000062326) BRWD3 (ENSDARG00000035540) #22 chmp1b (ENSDARG00000099624) CNGA2 (ENSDARG00000100436) ENSDARG00000099449 zdhhc15a (ENSDARG00000101039) uprt (ENSDARG00000035549) NEXMIF (ENSDARG00000089271) prps1a (ENSDARG00000015524) tbx5b (ENSDARG00000092060) ENSDARG00000095150 CFAP73 (ENSDARG00000035550) IQCD (ENSDARG00000035551) TPCN1 (ENSDARG00000062362) agtr2 (ENSDARG00000035552) ENSDARG00000094760 plp1b (ENSDARG00000011929) Characiphysae ANCESTRAL SPECIES 87 ENSGT00950000183079.A.b.c.b ENSGT00980000198690 ENSGT00940000161656 ENSGT00940000166502 ENSGT00940000156455 ENSGT01070000253816.a.b ENSGT00940000154442 ENSGT00660000097471 ENSGT00940000160515 ENSGT00390000017980 ENSGT00940000164304 ENSGT00390000005094.g ENSGT00940000164237.m ENSGT00770000121762 ENSGT00980000199388 ENSGT00950000183107.a.b.b #22 ENSGT00950000182832.D.b ENSGT00940000155374.g.a ENSGT00940000155902.d ENSGT00940000158214.d ENSGT01020000230412.D.a.a.b.d ENSGT00940000156506.a ENSGT00940000153110.D ENSGT00730000111354 ENSGT00940000158958 Characiphysae_b ANCESTRAL SPECIES 101 ENSGT00940000155573.g.b ENSGT00950000183079.A.b.c.b ENSGT00940000161656 ENSGT00940000166502 ENSGT00940000156455 ENSGT01070000253816.a.b ENSGT00940000154442 ENSGT00660000097471 ENSGT00940000160515 ENSGT00390000017980 ENSGT00940000164304 ENSGT00390000005094.g ENSGT00940000164237.m ENSGT00770000121762 ENSGT00980000199388 ENSGT00950000183107.a.b.b #22 ENSGT00940000155374.g.a ENSGT00940000155902.d ENSGT00940000158214.d ENSGT01020000230412.D.a.a.b.d ENSGT00940000156506.a ENSGT00940000153110.D ENSGT00730000111354 ENSGT00940000158958 Electric eel MODERN SPECIES 1270 ENSEEEG00000005746 ENSEEEG00000005743 #22 Characoidei ANCESTRAL SPECIES 92 ENSGT00950000183079.A.b.c.b ENSGT00940000161656 ENSGT00940000166502 ENSGT00940000156455 ENSGT01070000253816.a.b ENSGT00940000154442 ENSGT00660000097471 ENSGT00940000160515 ENSGT00390000017980 ENSGT00940000164304 ENSGT00390000005094.g ENSGT00940000164237.m ENSGT00770000121762 ENSGT00980000199388 ENSGT00950000182802.D.db.b ENSGT00950000183107.a.b.b #22 ENSGT00940000155374.g.a ENSGT00940000155902.d ENSGT00940000158214.d ENSGT01020000230412.D.a.a.b.d ENSGT00940000156506.a ENSGT00940000153110.D ENSGT00730000111354 ENSGT00940000158958 ENSGT00950000183116.b.a.a.b.b.i.a.a.b Mexicana tetra MODERN SPECIES 18 ENSAMXG00000006861 ENSAMXG00000030085 zgc:113208 (ENSAMXG00000042293) mtnr1c (ENSAMXG00000034668) vma21 (ENSAMXG00000006901) npas2 (ENSAMXG00000006915) ENSAMXG00000006937 ENSAMXG00000006950 ENSAMXG00000034232 ENSAMXG00000039013 apool (ENSAMXG00000029037) #15 ENSAMXG00000037259 ENSAMXG00000031834 ENSAMXG00000030848 hmgn7 (ENSAMXG00000007022) BRWD3 (ENSAMXG00000007033) #22 chmp1b (ENSAMXG00000007042) CNGA2 (ENSAMXG00000007050) ENSAMXG00000007066 zdhhc15a (ENSAMXG00000035547) uprt (ENSAMXG00000037352) NEXMIF (ENSAMXG00000007091) ENSAMXG00000038905 prps1a (ENSAMXG00000032486) tbx5b (ENSAMXG00000038165) CFAP73 (ENSAMXG00000043844) IQCD (ENSAMXG00000036602) TPCN1 (ENSAMXG00000007110) ENSAMXG00000032649 ENSAMXG00000007123 ENSAMXG00000041818 Red-bellied piranha MODERN SPECIES 443 ENSPNAG00000008331 rpl36a (ENSPNAG00000008320) glra4b (ENSPNAG00000000879) aifm1 (ENSPNAG00000008292) tnfsf10l4 (ENSPNAG00000000804) nono (ENSPNAG00000008232) zgc:113208 (ENSPNAG00000008219) mtnr1c (ENSPNAG00000008208) vma21 (ENSPNAG00000000774) npas2 (ENSPNAG00000000764) ENSPNAG00000000744 apool (ENSPNAG00000008161) #15 ENSPNAG00000008148 ENSPNAG00000008124 ENSPNAG00000000689 ENSPNAG00000000684 #22 ENSPNAG00000000678 ##22 Elephant shark MODERN SPECIES 1487 dacha (ENSCMIG00000005996) #9 chm (ENSCMIG00000006000) #11 ENSCMIG00000006015 #13 znf711 (ENSCMIG00000006021) #14 ENSCMIG00000006025 ENSCMIG00000006030 #15 ENSCMIG00000006064 HDX (ENSCMIG00000006110) #18 rps6kal (ENSCMIG00000006380) #19 POU3F4 (ENSCMIG00000007197) #20 ENSCMIG00000007200 ENSCMIG00000007202 ENSCMIG00000007209 ENSCMIG00000007214 sh3bgrl (ENSCMIG00000007216) #21 BRWD3 (ENSCMIG00000007328) #22 TENT5D (ENSCMIG00000007675) chmp1b (ENSCMIG00000007679) TBX22 (ENSCMIG00000007692) ENSCMIG00000007712 ITM2A (ENSCMIG00000007722) ENSCMIG00000007731 p2ry10 (ENSCMIG00000007736) LPAR4 (ENSCMIG00000007740) ENSCMIG00000007742 cysltr1 (ENSCMIG00000007744) ENSCMIG00000007792 taf9 (ENSCMIG00000007874) sucla2 (ENSCMIG00000007908) htr2cl1 (ENSCMIG00000008016) ENSCMIG00000008021