Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744 #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757 #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451	ENSGT00390000010993	ENSGT00950000182900.D.d.a	ENSGT00390000000230
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744 #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451	ENSGT00390000010993	ENSGT00950000182900.D.d.a
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451	ENSGT00390000010993	ENSGT00950000182900.D.d.a
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451	ENSGT00390000010993	ENSGT00950000182900.D.d.a
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000154757.bb.a ##24	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451	ENSGT00390000010993	ENSGT00950000182900.D.d.a
Bos	ANCESTRAL SPECIES		ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #24	ENSGT00940000153432.B.l.b ##25	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451.g	ENSGT00390000010993	ENSGT00950000182900.D.d.a	ENSGT00390000000230
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000154757.bb.a ##24	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.a.b.a.b.a #32	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451.g	ENSGT00390000010993
Cow	DUPLICATION
Cow	DUPLICATION
Cow	MODERN SPECIES	22	ADAMTS4 (ENSBTAG00000013210) #7	B4GALT3 (ENSBTAG00000021897) #8	PPOX (ENSBTAG00000021894) #9	USP21 (ENSBTAG00000021893) #10	UFC1 (ENSBTAG00000021705) #11	DEDD (ENSBTAG00000020154) #12	NIT1 (ENSBTAG00000020153) #13	PFDN2 (ENSBTAG00000020152) #14	KLHDC9 (ENSBTAG00000020150) #15	NECTIN4 (ENSBTAG00000017877) #16	ARHGAP30 (ENSBTAG00000017875) #17	USF1 (ENSBTAG00000017873) #18	TSTD1 (ENSBTAG00000017856) #19	F11R (ENSBTAG00000017846) #20	ENSBTAG00000050256 #21	ITLN2 (ENSBTAG00000048662) #22	ITLN2 (ENSBTAG00000052308) #23	ENSBTAG00000054271 #24	ENSBTAG00000046231 #25	CD244 (ENSBTAG00000002951) #26	LY9 (ENSBTAG00000002947) #27	ENSBTAG00000010458 #28	SLAMF7 (ENSBTAG00000001197) #29	CD48 (ENSBTAG00000011238) #30	SLAMF1 (ENSBTAG00000007927) #31	ENSBTAG00000051438 #32	CD84 (ENSBTAG00000019033) #33	SLAMF6 (ENSBTAG00000014368) #34	ENSBTAG00000015741 #35	VANGL2 (ENSBTAG00000006560) #36	NCSTN (ENSBTAG00000004334) #37
Cow	MODERN SPECIES	125																ENSBTAG00000052315 ##22
Cow	MODERN SPECIES	22	NDUFS2 (ENSBTAG00000002203)	ADAMTS4 (ENSBTAG00000013210) #7	B4GALT3 (ENSBTAG00000021897) #8	PPOX (ENSBTAG00000021894) #9	USP21 (ENSBTAG00000021893) #10	UFC1 (ENSBTAG00000021705) #11	DEDD (ENSBTAG00000020154) #12	NIT1 (ENSBTAG00000020153) #13	PFDN2 (ENSBTAG00000020152) #14	KLHDC9 (ENSBTAG00000020150) #15	NECTIN4 (ENSBTAG00000017877) #16	ARHGAP30 (ENSBTAG00000017875) #17	USF1 (ENSBTAG00000017873) #18	TSTD1 (ENSBTAG00000017856) #19	F11R (ENSBTAG00000017846) #20	ENSBTAG00000050256 #21	ITLN2 (ENSBTAG00000048662) #22	ITLN2 (ENSBTAG00000052308) #23	ENSBTAG00000054271 #24	ENSBTAG00000046231 #25	CD244 (ENSBTAG00000002951) #26	LY9 (ENSBTAG00000002947) #27	ENSBTAG00000010458 #28	SLAMF7 (ENSBTAG00000001197) #29	CD48 (ENSBTAG00000011238) #30	SLAMF1 (ENSBTAG00000007927) #31	ENSBTAG00000051438 #32	CD84 (ENSBTAG00000019033) #33	SLAMF6 (ENSBTAG00000014368) #34	ENSBTAG00000015741 #35	VANGL2 (ENSBTAG00000006560) #36
Bos_a	ANCESTRAL SPECIES	27	ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196 #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272 #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083 #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #24	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451.g	ENSGT00390000010993	ENSGT00950000182900.D.d.a
Domestic yak	MODERN SPECIES	22	APOA2 (ENSBGRG00000001346)	NDUFS2 (ENSBGRG00000001256)	ADAMTS4 (ENSBGRG00000001210) #7	B4GALT3 (ENSBGRG00000001192) #8	PPOX (ENSBGRG00000001124) #9	USP21 (ENSBGRG00000001019) #10	DEDD (ENSBGRG00000000992) #12	NIT1 (ENSBGRG00000000965) #13	PFDN2 (ENSBGRG00000000941) #14	KLHDC9 (ENSBGRG00000000928) #15	NECTIN4 (ENSBGRG00000000904) #16	ARHGAP30 (ENSBGRG00000000881) #17	USF1 (ENSBGRG00000000853) #18	ENSBGRG00000000809 #19	ENSBGRG00000000756 #20	ITLN2 (ENSBGRG00000000698) #22	ENSBGRG00000000625 #23	ENSBGRG00000000569 #24	ENSBGRG00000000537 ##25	CD244 (ENSBGRG00000000502) #26	LY9 (ENSBGRG00000000475) #28	ENSBGRG00000000465 #28	SLAMF7 (ENSBGRG00000000343) #29	CD48 (ENSBGRG00000000308) #30	SLAMF1 (ENSBGRG00000000274) #31	CD84 (ENSBGRG00000000252) #33	ENSBGRG00000000226 #34	ENSBGRG00000000219 #35	VANGL2 (ENSBGRG00000000209) #36	NHLH1 (ENSBGRG00000000190)	NCSTN (ENSBGRG00000017046) #37
American bison	MODERN SPECIES	3013													ENSBBBG00000000318 #23	ENSBBBG00000023579 #24	ENSBBBG00000023589 ##25	ENSBBBG00000023605 #22	LY9 (ENSBBBG00000023648) #28	SLAMF7 (ENSBBBG00000023703) #29	CD48 (ENSBBBG00000023715) #30	SLAMF1 (ENSBBBG00000023726) #31
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000009529	ENSGT00940000160966 #7	ENSGT00940000158549 #8	ENSGT00390000008744.k #9	ENSGT00940000155545.a #10	ENSGT00390000008196.l #11	ENSGT00390000008714.a #12	ENSGT00550000075099 #13	ENSGT00390000009272.c #14	ENSGT00390000011582 #15	ENSGT00940000157535 #16	ENSGT00940000161411 #17	ENSGT00940000157083.k #18	ENSGT00940000161394.m.b #19	ENSGT00940000159186 #20	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT01030000234540.A.a.a #26	ENSGT01030000234540.B.a.a.a.a #28	ENSGT01030000234540.B.a.a.a.b.b.a #29	ENSGT01030000234540.A.a.b.c #30	ENSGT01030000234540.A.a.b.d #30	ENSGT01030000234540.D #31	ENSGT01030000234540.B.a.a.a.b.b.b #33	ENSGT01030000234540.B.a.a.a.b.a.a #34	ENSGT00390000012496.b #36	ENSGT00940000162622	ENSGT00390000014633 #37	ENSGT00940000155451	ENSGT00390000010993	ENSGT00950000182900.D.d.a
Goat	DUPLICATION
Goat	MODERN SPECIES	22	ADAMTS4 (ENSCHIG00000026815) #7	B4GALT3 (ENSCHIG00000019121) #8	ENSCHIG00000008041 #9	USP21 (ENSCHIG00000018217) #10	UFC1 (ENSCHIG00000020452) #11	ENSCHIG00000025706 #12	NIT1 (ENSCHIG00000007140) #13	ENSCHIG00000021837 #14	KLHDC9 (ENSCHIG00000016661) #15	NECTIN4 (ENSCHIG00000025508) #16	ARHGAP30 (ENSCHIG00000011200) #17	ENSCHIG00000019631 #18	ENSCHIG00000025683 #19	F11R (ENSCHIG00000021162) #20	ENSCHIG00000013123	ENSCHIG00000001352 #22	ENSCHIG00000027254 #23	ENSCHIG00000025678 #23	ENSCHIG00000011711 #22	ENSCHIG00000014904 #30	SLAMF7 (ENSCHIG00000021635) #29	ENSCHIG00000003401	ENSCHIG00000007433 #28	ENSCHIG00000015987 #28	ENSCHIG00000022290 #26	ENSCHIG00000025292	ENSCHIG00000011600	ENSCHIG00000019395 #30	ENSCHIG00000018067 #30	SLAMF1 (ENSCHIG00000009511) #31	CD84 (ENSCHIG00000020076) #33
Goat	MODERN SPECIES	22	NHLH1 (ENSCHIG00000012209)	VANGL2 (ENSCHIG00000015925) #36	ENSCHIG00000024954 #34	CD84 (ENSCHIG00000020076) #33	SLAMF1 (ENSCHIG00000009511) #31	ENSCHIG00000018067 #30	ENSCHIG00000019395 #30	ENSCHIG00000011600	ENSCHIG00000025292	ENSCHIG00000022290 #26	ENSCHIG00000015987 #28	ENSCHIG00000007433 #28	ENSCHIG00000003401	SLAMF7 (ENSCHIG00000021635) #29	ENSCHIG00000014904 #30	ENSCHIG00000011711 #22	ENSCHIG00000025678 #23	ENSCHIG00000027254 #23	ENSCHIG00000001352 #22	ENSCHIG00000013123	F11R (ENSCHIG00000021162) #20	ENSCHIG00000025683 #19	ENSCHIG00000019631 #18	ARHGAP30 (ENSCHIG00000011200) #17	NECTIN4 (ENSCHIG00000025508) #16	KLHDC9 (ENSCHIG00000016661) #15	ENSCHIG00000021837 #14	NIT1 (ENSCHIG00000007140) #13	ENSCHIG00000025706 #12	UFC1 (ENSCHIG00000020452) #11	USP21 (ENSCHIG00000018217) #10