Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Primates	ANCESTRAL SPECIES	7	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.f #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.c #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.e ##23	ENSGT00940000154757.f #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.c #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.f #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.c #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000154319.u.a.c.b #33	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Gorilla	MODERN SPECIES		APOA2 (ENSGGOG00000005718) #7	ENSGGOG00000026955 #8	NDUFS2 (ENSGGOG00000007729) #9	ADAMTS4 (ENSGGOG00000007720) #10	B4GALT3 (ENSGGOG00000007506) #11	PPOX (ENSGGOG00000028090) #12	USP21 (ENSGGOG00000007495) #13	ENSGGOG00000007486 #14	PFDN2 (ENSGGOG00000005094) #15	KLHDC9 (ENSGGOG00000005089) #16	NECTIN4 (ENSGGOG00000022856) #17	ARHGAP30 (ENSGGOG00000026781) #18	USF1 (ENSGGOG00000003935) #19	TSTD1 (ENSGGOG00000003928) #20	F11R (ENSGGOG00000000085) #21	ITLN2 (ENSGGOG00000005829) #22	ITLN1 (ENSGGOG00000002853) #23	CD244 (ENSGGOG00000005612) #24	LY9 (ENSGGOG00000005605) #25	SLAMF7 (ENSGGOG00000026166) #26	CD48 (ENSGGOG00000003643) #27	ENSGGOG00000000291 #28	SLAMF6 (ENSGGOG00000004070) #29	VANGL2 (ENSGGOG00000014006) #30	NHLH1 (ENSGGOG00000015736) #31	NCSTN (ENSGGOG00000003518) #32	ENSGGOG00000038132 #33	COPA (ENSGGOG00000003503) #34	ENSGGOG00000037038 #35	ENSGGOG00000041014 #36	DCAF8 (ENSGGOG00000013028) #37
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.f #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.c #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000154319.u.a.c.b #33	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Pan	ANCESTRAL SPECIES		ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00550000074946.f	ENSGT00940000154757.e ##23	ENSGT00940000154757.f #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.c #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000154319.u.a.c.b #33	ENSGT00940000155451 #34
Bonobo	MODERN SPECIES		ADAMTS4 (ENSPPAG00000043410) #10	B4GALT3 (ENSPPAG00000032270) #11	PPOX (ENSPPAG00000035169) #12	USP21 (ENSPPAG00000043245) #13	UFC1 (ENSPPAG00000037913) ##14	DEDD (ENSPPAG00000028161)	NIT1 (ENSPPAG00000029272)	PFDN2 (ENSPPAG00000033676) #15	ENSPPAG00000032836 #16	NECTIN4 (ENSPPAG00000039929) #17	ENSPPAG00000043961	ARHGAP30 (ENSPPAG00000029470) #18	USF1 (ENSPPAG00000030640) #19	TSTD1 (ENSPPAG00000017175) #20	F11R (ENSPPAG00000023452) #21	ITLN2 (ENSPPAG00000030282) #22	ENSPPAG00000031263	ENSPPAG00000028673 ##23	ITLN1 (ENSPPAG00000042008) #23	CD244 (ENSPPAG00000035376) #24	LY9 (ENSPPAG00000041047) #25	SLAMF7 (ENSPPAG00000033814) #26	CD48 (ENSPPAG00000038743) #27	ENSPPAG00000031114 #28	CD84 (ENSPPAG00000010730) ##24	SLAMF6 (ENSPPAG00000036502) #29	VANGL2 (ENSPPAG00000018476) #30	NHLH1 (ENSPPAG00000002987) #31	NCSTN (ENSPPAG00000032693) #32	ENSPPAG00000022285 #33	COPA (ENSPPAG00000028679) #34
Chimpanzee	MODERN SPECIES		NDUFS2 (ENSPTRG00000001577) #9	ADAMTS4 (ENSPTRG00000001576) #10	B4GALT3 (ENSPTRG00000001575) #11	PPOX (ENSPTRG00000001574) #12	USP21 (ENSPTRG00000001573) #13	UFC1 (ENSPTRG00000001572) ##14	DEDD (ENSPTRG00000001571)	NIT1 (ENSPTRG00000001570)	PFDN2 (ENSPTRG00000001569) #15	KLHDC9 (ENSPTRG00000001568) #16	NECTIN4 (ENSPTRG00000001567) #17	ARHGAP30 (ENSPTRG00000001566) #18	USF1 (ENSPTRG00000001565) #19	TSTD1 (ENSPTRG00000034550) #20	F11R (ENSPTRG00000001564) #21	ITLN2 (ENSPTRG00000001563) #22	ENSPTRG00000052765	ITLN1 (ENSPTRG00000001561) #23	CD244 (ENSPTRG00000001560) #24	LY9 (ENSPTRG00000001559) #25	SLAMF7 (ENSPTRG00000001558) #26	CD48 (ENSPTRG00000001557) #27	SLAMF1 (ENSPTRG00000001556) #28	CD84 (ENSPTRG00000049432) ##24	SLAMF6 (ENSPTRG00000001554) #29	VANGL2 (ENSPTRG00000001552) #30	NHLH1 (ENSPTRG00000045092) #31	NCSTN (ENSPTRG00000001550) #32	ENSPTRG00000049673	COPA (ENSPTRG00000001549) #34	PEX19 (ENSPTRG00000001548) #35
Human	MODERN SPECIES		NDUFS2 (ENSG00000158864) #9	ADAMTS4 (ENSG00000158859) #10	B4GALT3 (ENSG00000158850) #11	PPOX (ENSG00000143224) #12	USP21 (ENSG00000143258) #13	UFC1 (ENSG00000143222) ##14	DEDD (ENSG00000158796)	NIT1 (ENSG00000158793)	PFDN2 (ENSG00000143256) #15	KLHDC9 (ENSG00000162755) #16	NECTIN4 (ENSG00000143217) #17	ARHGAP30 (ENSG00000186517) #18	USF1 (ENSG00000158773) #19	TSTD1 (ENSG00000215845) #20	F11R (ENSG00000158769) #21	ITLN2 (ENSG00000158764) #22	ITLN1 (ENSG00000179914) #23	CD244 (ENSG00000122223) #24	LY9 (ENSG00000122224) #25	SLAMF7 (ENSG00000026751) #26	CD48 (ENSG00000117091) #27	SLAMF1 (ENSG00000117090) #28	CD84 (ENSG00000066294) ##24	SLAMF6 (ENSG00000162739) #29	VANGL2 (ENSG00000162738) #30	NHLH1 (ENSG00000171786) #31	NCSTN (ENSG00000162736) #32	COPA (ENSG00000122218) #34	PEX19 (ENSG00000162735) #35	ENSG00000258465	DCAF8 (ENSG00000132716) #37
Orangutan	MODERN SPECIES		NDUFS2 (ENSPPYG00000000605) #9	ADAMTS4 (ENSPPYG00000000606) #10	B4GALT3 (ENSPPYG00000000607) #11	PPOX (ENSPPYG00000000608) #12	USP21 (ENSPPYG00000000609) #13	UFC1 (ENSPPYG00000000610) ##14	DEDD (ENSPPYG00000000612)	NIT1 (ENSPPYG00000000613)	PFDN2 (ENSPPYG00000000614) #15	KLHDC9 (ENSPPYG00000000615) #16	NECTIN4 (ENSPPYG00000000616) #17	ARHGAP30 (ENSPPYG00000000617) #18	USF1 (ENSPPYG00000000619) #19	TSTD1 (ENSPPYG00000000620) #20	F11R (ENSPPYG00000000621) #21	ITLN2 (ENSPPYG00000000622) #22	ENSPPYG00000000623 ##23	ENSPPYG00000034723 #23	CD244 (ENSPPYG00000000624) #24	ENSPPYG00000000625 #25	ENSPPYG00000031797 ##24	SLAMF7 (ENSPPYG00000000626) #26	CD48 (ENSPPYG00000000627) #27	ENSPPYG00000000628 #28	CD84 (ENSPPYG00000000629) ##24	SLAMF6 (ENSPPYG00000000630) #29	VANGL2 (ENSPPYG00000000631) #30	NHLH1 (ENSPPYG00000000632) #31	NCSTN (ENSPPYG00000000633) #32	COPA (ENSPPYG00000000634) #34	PEX19 (ENSPPYG00000000636) #35
Gibbon	MODERN SPECIES	2	B4GALT3 (ENSNLEG00000014082) #11	PPOX (ENSNLEG00000014066) #12	USP21 (ENSNLEG00000014052) #13	ENSNLEG00000014049 ##14	NIT1 (ENSNLEG00000030752)	DEDD (ENSNLEG00000014017)	PFDN2 (ENSNLEG00000013995) #15	ENSNLEG00000029317 #16	NECTIN4 (ENSNLEG00000035019) #17	ENSNLEG00000033169	ENSNLEG00000013952	USF1 (ENSNLEG00000013935) #19	ENSNLEG00000013930 #20	F11R (ENSNLEG00000013881) #21	ENSNLEG00000036161	ENSNLEG00000013864 #22	ITLN1 (ENSNLEG00000013826) #23	CD244 (ENSNLEG00000013786) #24	LY9 (ENSNLEG00000013739) #25	SLAMF7 (ENSNLEG00000013702) #26	ENSNLEG00000013683 #28	CD84 (ENSNLEG00000013660) ##24	SLAMF6 (ENSNLEG00000013641) #29	ENSNLEG00000013639 #30	NHLH1 (ENSNLEG00000013637) #31	NCSTN (ENSNLEG00000013620) #32	COPA (ENSNLEG00000026886) #34	ENSNLEG00000029023 ##33	PEX19 (ENSNLEG00000026787) #35	DCAF8 (ENSNLEG00000013532) #37	PEA15 (ENSNLEG00000013504)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Olive baboon	MODERN SPECIES		ADAMTS4 (ENSPANG00000000680) #10	B4GALT3 (ENSPANG00000000679) #11	PPOX (ENSPANG00000007961) #12	USP21 (ENSPANG00000025934) #13	UFC1 (ENSPANG00000041377) ##14	DEDD (ENSPANG00000014077)	NIT1 (ENSPANG00000007595)	PFDN2 (ENSPANG00000014788) #15	KLHDC9 (ENSPANG00000009055) #16	NECTIN4 (ENSPANG00000005565) #17	ARHGAP30 (ENSPANG00000016142) #18	USF1 (ENSPANG00000016141) #19	TSTD1 (ENSPANG00000016140) #20	F11R (ENSPANG00000016139) #21	ENSPANG00000050565	ITLN2 (ENSPANG00000029747) #22	ITLN1 (ENSPANG00000004958) #23	CD244 (ENSPANG00000001636) #24	ENSPANG00000029515 ##24	ENSPANG00000032860 ##24	SLAMF7 (ENSPANG00000005963) #26	CD48 (ENSPANG00000016675) #27	SLAMF1 (ENSPANG00000035298) #28	CD84 (ENSPANG00000024052) ##24	SLAMF6 (ENSPANG00000004246) #29	VANGL2 (ENSPANG00000030817) #30	NHLH1 (ENSPANG00000011970) #31	NCSTN (ENSPANG00000003878) #32	COPA (ENSPANG00000005347) #34	PEX19 (ENSPANG00000010231) #35	DCAF8 (ENSPANG00000016333) #37
Cercopithecinae_d	ANCESTRAL SPECIES	33	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Drill	MODERN SPECIES	248																ITLN2 (ENSMLEG00000035000) #22	ITLN1 (ENSMLEG00000000204) #23	CD244 (ENSMLEG00000013853) #24	ENSMLEG00000028066 ##24	ENSMLEG00000032750 ##24	SLAMF7 (ENSMLEG00000028085) #26	CD48 (ENSMLEG00000034467) #27	SLAMF1 (ENSMLEG00000035075) #28	CD84 (ENSMLEG00000028872) ##24
Sooty mangabey	MODERN SPECIES	144	ADAMTS4 (ENSCATG00000025919) #10	B4GALT3 (ENSCATG00000010744) #11	PPOX (ENSCATG00000030808) #12	USP21 (ENSCATG00000035469) #13	UFC1 (ENSCATG00000021827) ##14	DEDD (ENSCATG00000032914)	NIT1 (ENSCATG00000021093)	PFDN2 (ENSCATG00000034696) #15	KLHDC9 (ENSCATG00000026703) #16	NECTIN4 (ENSCATG00000044865) #17	ENSCATG00000031095	ARHGAP30 (ENSCATG00000040363) #18	USF1 (ENSCATG00000010199) #19	TSTD1 (ENSCATG00000034838) #20	F11R (ENSCATG00000030542) #21	ITLN2 (ENSCATG00000019938) #22	ITLN1 (ENSCATG00000038451) #23	CD244 (ENSCATG00000036426) #24	LY9 (ENSCATG00000041196) ##24	SLAMF7 (ENSCATG00000042279) #26	CD48 (ENSCATG00000029588) #27	SLAMF1 (ENSCATG00000043147) #28	CD84 (ENSCATG00000045140) ##24	SLAMF6 (ENSCATG00000029325) #29	VANGL2 (ENSCATG00000030524) #30	NHLH1 (ENSCATG00000019382) #31	NCSTN (ENSCATG00000036360) #32	COPA (ENSCATG00000015423) #34	PEX19 (ENSCATG00000036619) #35	DCAF8 (ENSCATG00000030370) #37	PEA15 (ENSCATG00000042517)
Macaca	ANCESTRAL SPECIES		ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00910000147349	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000009529.a #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.b.a ##14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.a.d.b ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Rhesus	MODERN SPECIES		ENSMMUG00000062837	ENSMMUG00000060555	PPOX (ENSMMUG00000022630) #12	B4GALT3 (ENSMMUG00000022629) #11	USP21 (ENSMMUG00000022631) #13	UFC1 (ENSMMUG00000022632) ##14	DEDD (ENSMMUG00000002010)	NIT1 (ENSMMUG00000002009)	PFDN2 (ENSMMUG00000060871) #15	KLHDC9 (ENSMMUG00000002007) #16	NECTIN4 (ENSMMUG00000064337) #17	ARHGAP30 (ENSMMUG00000002005) #18	USF1 (ENSMMUG00000002003) #19	F11R (ENSMMUG00000001996) #21	TSTD1 (ENSMMUG00000002001) #20	ITLN2 (ENSMMUG00000012037) #22	ITLN1 (ENSMMUG00000013391) #23	CD244 (ENSMMUG00000017333) #24	ENSMMUG00000063750 #24	ENSMMUG00000053012 ##24	SLAMF7 (ENSMMUG00000017327) #26	CD48 (ENSMMUG00000015812) #27	SLAMF1 (ENSMMUG00000015809) #28	CD84 (ENSMMUG00000015470) ##24	SLAMF6 (ENSMMUG00000015601) #29	VANGL2 (ENSMMUG00000020295) #30	NCSTN (ENSMMUG00000021856) #32	NHLH1 (ENSMMUG00000021865) #31	COPA (ENSMMUG00000021854) #34	DCAF8 (ENSMMUG00000017841) #37	PEA15 (ENSMMUG00000017838)
Pig-tailed macaque	MODERN SPECIES	262	ADAMTS4 (ENSMNEG00000044548) #10	B4GALT3 (ENSMNEG00000043704) #11	PPOX (ENSMNEG00000045036) #12	USP21 (ENSMNEG00000034106) #13	UFC1 (ENSMNEG00000043613) ##14	DEDD (ENSMNEG00000045188)	NIT1 (ENSMNEG00000036761)	PFDN2 (ENSMNEG00000038156) #15	KLHDC9 (ENSMNEG00000044438) #16	ENSMNEG00000040743	NECTIN4 (ENSMNEG00000043450) #17	ARHGAP30 (ENSMNEG00000032091) #18	USF1 (ENSMNEG00000033629) #19	TSTD1 (ENSMNEG00000037339) #20	F11R (ENSMNEG00000035159) #21	ITLN2 (ENSMNEG00000041369) #22	ITLN1 (ENSMNEG00000031807) #23	CD244 (ENSMNEG00000043752) #24	ENSMNEG00000001849 ##24	ENSMNEG00000030969 ##24	SLAMF7 (ENSMNEG00000030276) #26	CD48 (ENSMNEG00000043646) #27	SLAMF1 (ENSMNEG00000036395) #28	CD84 (ENSMNEG00000039625) ##24	SLAMF6 (ENSMNEG00000043020) #29	VANGL2 (ENSMNEG00000030653) #30	NHLH1 (ENSMNEG00000014520) #31	NCSTN (ENSMNEG00000043103) #32	COPA (ENSMNEG00000028029) #34	PEX19 (ENSMNEG00000041680) #35	DCAF8 (ENSMNEG00000045420) #37
Rhinopithecus	ANCESTRAL SPECIES	169																ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a.d.a ##24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230	ENSGT00390000019377.a
Golden snub-nosed monkey	MODERN SPECIES	2077																ITLN2 (ENSRROG00000033481) #22	ITLN1 (ENSRROG00000038874) #23	CD244 (ENSRROG00000030220) #24	ENSRROG00000041487 ##24
Black snub-nosed monkey	MODERN SPECIES	1647																ITLN2 (ENSRBIG00000033927) #22
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.a.c #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a.a #37	ENSGT00390000000230
Cebidae	ANCESTRAL SPECIES	12	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.a.c #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a.a #37	ENSGT00390000000230
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196.g.a.c #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a.a #37	ENSGT00390000000230
Capuchin	MODERN SPECIES	540	NDUFS2 (ENSCCAG00000024540) #9	ADAMTS4 (ENSCCAG00000034751) #10	B4GALT3 (ENSCCAG00000028871) #11	ENSCCAG00000021684 #12	USP21 (ENSCCAG00000023909) #13	ENSCCAG00000035072 #14	DEDD (ENSCCAG00000032812)	NIT1 (ENSCCAG00000033871)	PFDN2 (ENSCCAG00000021880) #15	KLHDC9 (ENSCCAG00000030752) #16	NECTIN4 (ENSCCAG00000020380) #17	ARHGAP30 (ENSCCAG00000017444) #18	USF1 (ENSCCAG00000032822) #19	TSTD1 (ENSCCAG00000036063) #20	F11R (ENSCCAG00000025176) #21	ITLN2 (ENSCCAG00000020274) #22	ITLN1 (ENSCCAG00000035838) #23	CD244 (ENSCCAG00000031221) #24	LY9 (ENSCCAG00000036375) #25
Bolivian squirrel monkey	MODERN SPECIES	136	NDUFS2 (ENSSBOG00000024399) #9	ADAMTS4 (ENSSBOG00000027750) #10	B4GALT3 (ENSSBOG00000032620) #11	PPOX (ENSSBOG00000027117) #12	USP21 (ENSSBOG00000027432) #13	ENSSBOG00000024286 ##14	DEDD (ENSSBOG00000023259)	NIT1 (ENSSBOG00000024732)	ENSSBOG00000027060 #15	KLHDC9 (ENSSBOG00000022953) #16	NECTIN4 (ENSSBOG00000030566) #17	ARHGAP30 (ENSSBOG00000024708) #18	USF1 (ENSSBOG00000029127) #19	TSTD1 (ENSSBOG00000026117) #20	F11R (ENSSBOG00000022220) #21	ITLN2 (ENSSBOG00000032450) #22	ARPC3 (ENSSBOG00000019325)	ITLN1 (ENSSBOG00000034643) #23	CD244 (ENSSBOG00000028790) #24	SLAMF7 (ENSSBOG00000025063) #26	CD48 (ENSSBOG00000023138) #27	SLAMF1 (ENSSBOG00000036205) #28	ENSSBOG00000023711	CD84 (ENSSBOG00000020634) ##24	SLAMF6 (ENSSBOG00000019937) #29	VANGL2 (ENSSBOG00000025302) #30	NHLH1 (ENSSBOG00000019765) #31	NCSTN (ENSSBOG00000034466) #32	COPA (ENSSBOG00000033697) #34	PEX19 (ENSSBOG00000024569) #35	DCAF8 (ENSSBOG00000027086) #37
Mas night monkey	MODERN SPECIES	1180	NDUFS2 (ENSANAG00000022697) #9	ADAMTS4 (ENSANAG00000027139) #10	B4GALT3 (ENSANAG00000037289) #11	PPOX (ENSANAG00000034048) #12	ENSANAG00000038215 #13	ENSANAG00000034788 #14	ENSANAG00000021781	NIT1 (ENSANAG00000029350)	PFDN2 (ENSANAG00000038206) #15	ENSANAG00000008819 #16	NECTIN4 (ENSANAG00000024594) #17	ARHGAP30 (ENSANAG00000036780) #18	USF1 (ENSANAG00000038045) #19	TSTD1 (ENSANAG00000022456) #20	F11R (ENSANAG00000026326) #21	ITLN2 (ENSANAG00000032707) #22	ITLN1 (ENSANAG00000038196) #23	ENSANAG00000019706	CD244 (ENSANAG00000038266) #24	LY9 (ENSANAG00000023319) #25	SLAMF7 (ENSANAG00000031073) #26	CD48 (ENSANAG00000031915) #27	SLAMF1 (ENSANAG00000032037) #28	CD84 (ENSANAG00000027748) ##24	SLAMF6 (ENSANAG00000030397) #29	VANGL2 (ENSANAG00000025927) #30	NHLH1 (ENSANAG00000019487) #31	NCSTN (ENSANAG00000035070) #32	COPA (ENSANAG00000023326) #34	ENSANAG00000010196	PEX19 (ENSANAG00000023353) #35
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.c #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Greater bamboo lemur	MODERN SPECIES	638	ADAMTS4 (ENSPSMG00000020931) #10	ENSPSMG00000020940	B4GALT3 (ENSPSMG00000020958) #11	PPOX (ENSPSMG00000021097) #12	USP21 (ENSPSMG00000021167) #13	UFC1 (ENSPSMG00000021182) #14	ENSPSMG00000021199	NIT1 (ENSPSMG00000021249)	PFDN2 (ENSPSMG00000021266) #15	KLHDC9 (ENSPSMG00000021271) #16	NECTIN4 (ENSPSMG00000021286) #17	ARHGAP30 (ENSPSMG00000021371) #18	USF1 (ENSPSMG00000021431) #19	TSTD1 (ENSPSMG00000021443) #20	F11R (ENSPSMG00000021447) #21	ITLN2 (ENSPSMG00000021449) #22	ENSPSMG00000021457	CD244 (ENSPSMG00000021480) #24	LY9 (ENSPSMG00000021485) #25	SLAMF7 (ENSPSMG00000021513) #26	CD48 (ENSPSMG00000021527) #27	SLAMF1 (ENSPSMG00000021528) #28	CD84 (ENSPSMG00000021531) ##24	SLAMF6 (ENSPSMG00000021556) #29	VANGL2 (ENSPSMG00000021572) #30	NHLH1 (ENSPSMG00000021577) #31	NCSTN (ENSPSMG00000021616) #32	COPA (ENSPSMG00000021825) #34	ENSPSMG00000021983	PEX19 (ENSPSMG00000022006) #35	DCAF8 (ENSPSMG00000022059) #37
Mouse lemur	MODERN SPECIES	11	NDUFS2 (ENSMICG00000007269) #9	ADAMTS4 (ENSMICG00000034309) #10	B4GALT3 (ENSMICG00000007266) #11	ENSMICG00000007258 #12	USP21 (ENSMICG00000007253) #13	UFC1 (ENSMICG00000038098) #14	DEDD (ENSMICG00000007248)	NIT1 (ENSMICG00000007241)	PFDN2 (ENSMICG00000007235) #15	KLHDC9 (ENSMICG00000007231) #16	NECTIN4 (ENSMICG00000041538) #17	ARHGAP30 (ENSMICG00000007207) #18	USF1 (ENSMICG00000007199) #19	TSTD1 (ENSMICG00000037518) #20	F11R (ENSMICG00000007190) #21	ITLN2 (ENSMICG00000043466) #22	ENSMICG00000045598	ENSMICG00000017448	ENSMICG00000041845 #23	ENSMICG00000036222 #23	CD244 (ENSMICG00000014489) #24	LY9 (ENSMICG00000014474) #25	SLAMF7 (ENSMICG00000014465) #26	ENSMICG00000030341	CD48 (ENSMICG00000027704) #27	SLAMF1 (ENSMICG00000029784) #28	CD84 (ENSMICG00000012049) ##24	SLAMF6 (ENSMICG00000038306) #29	VANGL2 (ENSMICG00000014019) #30	NHLH1 (ENSMICG00000012700) #31	NCSTN (ENSMICG00000014005) #32
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Glires	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230	ENSGT00390000019377.a
Rabbit	MODERN SPECIES	4	NDUFS2 (ENSOCUG00000013512) #9	ADAMTS4 (ENSOCUG00000013498) #10	B4GALT3 (ENSOCUG00000029610) #11	PPOX (ENSOCUG00000002403) #12	USP21 (ENSOCUG00000002395) #13	UFC1 (ENSOCUG00000002389) #14	DEDD (ENSOCUG00000002387)	NIT1 (ENSOCUG00000002380)	PFDN2 (ENSOCUG00000002378) #15	KLHDC9 (ENSOCUG00000002373) #16	NECTIN4 (ENSOCUG00000002367) #17	ARHGAP30 (ENSOCUG00000002358) #18	USF1 (ENSOCUG00000002352) #19	TSTD1 (ENSOCUG00000022892) #20	F11R (ENSOCUG00000006994) #21	ITLN2 (ENSOCUG00000006985) #22	ITLN1 (ENSOCUG00000022033) #23	ENSOCUG00000013585 #24	SLAMF7 (ENSOCUG00000013559) #26	ENSOCUG00000013551 #27	ENSOCUG00000022552	SLAMF1 (ENSOCUG00000023151) #28	ENSOCUG00000032608	CD84 (ENSOCUG00000009311) ##24	ENSOCUG00000026792 #29	ENSOCUG00000038841	VANGL2 (ENSOCUG00000016671) #30	NHLH1 (ENSOCUG00000022024) #31	NCSTN (ENSOCUG00000014503) #32	COPA (ENSOCUG00000014479) #34	PEX19 (ENSOCUG00000014473) #35
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Marmotini	ANCESTRAL SPECIES	201																ENSGT00940000163851 #22	ENSGT00940000154757.t.b #23
Alpin marmot	MODERN SPECIES	29	ATP1A2 (ENSMMMG00000022340)	ENSMMMG00000022329	CASQ1 (ENSMMMG00000022314)	PEA15 (ENSMMMG00000022310)	DCAF8 (ENSMMMG00000022285) #37	PEX19 (ENSMMMG00000022272) #35	COPA (ENSMMMG00000022255) #34	NCSTN (ENSMMMG00000022245) #32	NHLH1 (ENSMMMG00000022244) #31	VANGL2 (ENSMMMG00000022221) #30	ENSMMMG00000022219 #29	CD84 (ENSMMMG00000022217) ##24	SLAMF1 (ENSMMMG00000022205) #28	CD48 (ENSMMMG00000022204) #27	ENSMMMG00000022199 #23	ENSMMMG00000022197 #22	ENSMMMG00000022183 #23	ENSMMMG00000022171 #23	ENSMMMG00000022164	SLAMF7 (ENSMMMG00000022161) #26	LY9 (ENSMMMG00000022154) #25	ENSMMMG00000022144 #24	ENSMMMG00000022137 #23	ENSMMMG00000022135	ENSMMMG00000022126 #23	F11R (ENSMMMG00000022123) #21	TSTD1 (ENSMMMG00000022118) #20	USF1 (ENSMMMG00000022110) #19	ARHGAP30 (ENSMMMG00000022101) #18	NECTIN4 (ENSMMMG00000022085) #17	KLHDC9 (ENSMMMG00000022082) #16
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394 #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.a #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	3															ENSGT00420000029746.e.b.h.a.b	ENSGT00940000163851.a #22	ENSGT00940000157757	ENSGT00940000159221	ENSGT00930000151041	ENSGT00860000135883	ENSGT01050000244808.D.fb.a	ENSGT01050000244808.A.b.a.a.b	ENSGT01050000244808.A.b.a.a.a.a.d.a	ENSGT01050000244808.A.b.a.a.a.b	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.a.c.b	ENSGT01050000244808.A.b.a.a.a.a.c.a	ENSGT00390000001092	ENSGT00390000000566	ENSGT01030000234556.a.b.b	ENSGT00530000064299
Horse	MODERN SPECIES	26	DCAF8 (ENSECAG00000007978) #37	PEX19 (ENSECAG00000053736) #35	COPA (ENSECAG00000021818) #34	NCSTN (ENSECAG00000009183) #32	NHLH1 (ENSECAG00000004612) #31	VANGL2 (ENSECAG00000021594) #30	SLAMF6 (ENSECAG00000021098) #29	CD84 (ENSECAG00000020491) ##24	SLAMF1 (ENSECAG00000014369) #28	ENSECAG00000046103	CD48 (ENSECAG00000013345) #27	SLAMF7 (ENSECAG00000012913) #26	LY9 (ENSECAG00000005856) #25	CD244 (ENSECAG00000022408) #24	ENSECAG00000033757	ITLN2 (ENSECAG00000012802) #22	OLFML2B (ENSECAG00000009623)	ATF6 (ENSECAG00000022307)	DUSP12 (ENSECAG00000021937)	ENSECAG00000035517	FCRLB (ENSECAG00000036050)	FCRLA (ENSECAG00000014914)	ENSECAG00000013060	ENSECAG00000006663	HSPA6 (ENSECAG00000033016)	ENSECAG00000045771	ENSECAG00000048969	CFAP126 (ENSECAG00000044873)	ENSECAG00000053757	SDHC (ENSECAG00000014215)	MPZ (ENSECAG00000009075)
Donkey	MODERN SPECIES	17									ENSEASG00005033819	ENSEASG00005031223	ENSEASG00005027599	ENSEASG00005027941 #23	ENSEASG00005025372	ENSEASG00005014533	ENSEASG00005029835	ENSEASG00005024673 #22	ENSEASG00005013764	ATF6 (ENSEASG00005013757)	DUSP12 (ENSEASG00005013752)	ENSEASG00005013749	FCRLB (ENSEASG00005013747)	FCRLA (ENSEASG00005013742)	ENSEASG00005013728	ENSEASG00005013720	HSPA6 (ENSEASG00005036040)	ENSEASG00005032351	ENSEASG00005035705	ENSEASG00005013667	ENSEASG00005034105	SDHC (ENSEASG00005028435)	CFAP126 (ENSEASG00005029913)
Equus	ANCESTRAL SPECIES																	ENSGT00940000163851.b #22
Donkey	MODERN SPECIES	17	CASQ1 (ENSEASG00005002508)	PEA15 (ENSEASG00005002499)	DCAF8 (ENSEASG00005002491) #37	PEX19 (ENSEASG00005002453) #35	COPA (ENSEASG00005002440) #34	NCSTN (ENSEASG00005002431) #32	NHLH1 (ENSEASG00005030018) #31	VANGL2 (ENSEASG00005002424) #30	SLAMF6 (ENSEASG00005002420) #29	CD84 (ENSEASG00005002413) ##24	SLAMF1 (ENSEASG00005002409) #28	CD48 (ENSEASG00005002404) #27	SLAMF7 (ENSEASG00005002400) #26	LY9 (ENSEASG00005002395) #25	CD244 (ENSEASG00005027619) #24	ENSEASG00005025142 #22	ENSEASG00005038695	ENSEASG00005012018 #21	TSTD1 (ENSEASG00005012024) #20	USF1 (ENSEASG00005012029) #19	ARHGAP30 (ENSEASG00005012031) #18	NECTIN4 (ENSEASG00005012036) #17	KLHDC9 (ENSEASG00005012043) #16	PFDN2 (ENSEASG00005025898) #15	NIT1 (ENSEASG00005012048)	DEDD (ENSEASG00005012052)	UFC1 (ENSEASG00005038549) #14	USP21 (ENSEASG00005012057) #13	PPOX (ENSEASG00005012067) #12	B4GALT3 (ENSEASG00005012305) #11	ADAMTS4 (ENSEASG00005012311) #10
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.a #20	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Suina	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Pig	DUPLICATION
Pig	DUPLICATION
Pig	MODERN SPECIES	12	UFC1 (ENSSSCG00000006363) #14	DEDD (ENSSSCG00000006365)	NIT1 (ENSSSCG00000037793)	PFDN2 (ENSSSCG00000055102) #15	KLHDC9 (ENSSSCG00000038597) #16	NECTIN4 (ENSSSCG00000026861) #17	ARHGAP30 (ENSSSCG00000006372) #18	USF1 (ENSSSCG00000006371) #19	TSTD1 (ENSSSCG00000006370) #20	F11R (ENSSSCG00000006369) #21	ENSSSCG00000031806	ENSSSCG00000062362 #22	ENSSSCG00000059629 #22	ENSSSCG00000055244 #22	ENSSSCG00000025885 #22	ENSSSCG00000060485 #22	CD244 (ENSSSCG00000006374) #24	LY9 (ENSSSCG00000006375) #25	ENSSSCG00000006376 #25	SLAMF7 (ENSSSCG00000006378) #26	CD48 (ENSSSCG00000006379) #27	SLAMF1 (ENSSSCG00000006380) #28	CD84 (ENSSSCG00000006381) ##24	SLAMF6 (ENSSSCG00000006382) #29	VANGL2 (ENSSSCG00000006383) #30	NHLH1 (ENSSSCG00000006384) #31	NCSTN (ENSSSCG00000006385) #32	COPA (ENSSSCG00000006386) #34	PEX19 (ENSSSCG00000023091) #35	DCAF8 (ENSSSCG00000006388) #37	PEA15 (ENSSSCG00000032164)
Pig	MODERN SPECIES	12	PPOX (ENSSSCG00000006361) #12	USP21 (ENSSSCG00000006362) #13	UFC1 (ENSSSCG00000006363) #14	DEDD (ENSSSCG00000006365)	NIT1 (ENSSSCG00000037793)	PFDN2 (ENSSSCG00000055102) #15	KLHDC9 (ENSSSCG00000038597) #16	NECTIN4 (ENSSSCG00000026861) #17	ARHGAP30 (ENSSSCG00000006372) #18	USF1 (ENSSSCG00000006371) #19	TSTD1 (ENSSSCG00000006370) #20	F11R (ENSSSCG00000006369) #21	ENSSSCG00000031806	ENSSSCG00000062362 #22	ENSSSCG00000059629 #22	ENSSSCG00000055244 #22	ENSSSCG00000025885 #22	ENSSSCG00000060485 #22	CD244 (ENSSSCG00000006374) #24	LY9 (ENSSSCG00000006375) #25	ENSSSCG00000006376 #25	SLAMF7 (ENSSSCG00000006378) #26	CD48 (ENSSSCG00000006379) #27	SLAMF1 (ENSSSCG00000006380) #28	CD84 (ENSSSCG00000006381) ##24	SLAMF6 (ENSSSCG00000006382) #29	VANGL2 (ENSSSCG00000006383) #30	NHLH1 (ENSSSCG00000006384) #31	NCSTN (ENSSSCG00000006385) #32	COPA (ENSSSCG00000006386) #34	PEX19 (ENSSSCG00000023091) #35
Pig	DUPLICATION
Pig	DUPLICATION
Pig	MODERN SPECIES	12	ADAMTS4 (ENSSSCG00000006359) #10	B4GALT3 (ENSSSCG00000006360) #11	PPOX (ENSSSCG00000006361) #12	USP21 (ENSSSCG00000006362) #13	UFC1 (ENSSSCG00000006363) #14	DEDD (ENSSSCG00000006365)	NIT1 (ENSSSCG00000037793)	PFDN2 (ENSSSCG00000055102) #15	KLHDC9 (ENSSSCG00000038597) #16	NECTIN4 (ENSSSCG00000026861) #17	ARHGAP30 (ENSSSCG00000006372) #18	USF1 (ENSSSCG00000006371) #19	TSTD1 (ENSSSCG00000006370) #20	F11R (ENSSSCG00000006369) #21	ENSSSCG00000031806	ENSSSCG00000062362 #22	ENSSSCG00000059629 #22	ENSSSCG00000055244 #22	ENSSSCG00000025885 #22	ENSSSCG00000060485 #22	CD244 (ENSSSCG00000006374) #24	LY9 (ENSSSCG00000006375) #25	ENSSSCG00000006376 #25	SLAMF7 (ENSSSCG00000006378) #26	CD48 (ENSSSCG00000006379) #27	SLAMF1 (ENSSSCG00000006380) #28	CD84 (ENSSSCG00000006381) ##24	SLAMF6 (ENSSSCG00000006382) #29	VANGL2 (ENSSSCG00000006383) #30	NHLH1 (ENSSSCG00000006384) #31	NCSTN (ENSSSCG00000006385) #32
Pig	MODERN SPECIES	12	B4GALT3 (ENSSSCG00000006360) #11	PPOX (ENSSSCG00000006361) #12	USP21 (ENSSSCG00000006362) #13	UFC1 (ENSSSCG00000006363) #14	DEDD (ENSSSCG00000006365)	NIT1 (ENSSSCG00000037793)	PFDN2 (ENSSSCG00000055102) #15	KLHDC9 (ENSSSCG00000038597) #16	NECTIN4 (ENSSSCG00000026861) #17	ARHGAP30 (ENSSSCG00000006372) #18	USF1 (ENSSSCG00000006371) #19	TSTD1 (ENSSSCG00000006370) #20	F11R (ENSSSCG00000006369) #21	ENSSSCG00000031806	ENSSSCG00000062362 #22	ENSSSCG00000059629 #22	ENSSSCG00000055244 #22	ENSSSCG00000025885 #22	ENSSSCG00000060485 #22	CD244 (ENSSSCG00000006374) #24	LY9 (ENSSSCG00000006375) #25	ENSSSCG00000006376 #25	SLAMF7 (ENSSSCG00000006378) #26	CD48 (ENSSSCG00000006379) #27	SLAMF1 (ENSSSCG00000006380) #28	CD84 (ENSSSCG00000006381) ##24	SLAMF6 (ENSSSCG00000006382) #29	VANGL2 (ENSSSCG00000006383) #30	NHLH1 (ENSSSCG00000006384) #31	NCSTN (ENSSSCG00000006385) #32	COPA (ENSSSCG00000006386) #34
Pig	MODERN SPECIES	12	USP21 (ENSSSCG00000006362) #13	UFC1 (ENSSSCG00000006363) #14	DEDD (ENSSSCG00000006365)	NIT1 (ENSSSCG00000037793)	PFDN2 (ENSSSCG00000055102) #15	KLHDC9 (ENSSSCG00000038597) #16	NECTIN4 (ENSSSCG00000026861) #17	ARHGAP30 (ENSSSCG00000006372) #18	USF1 (ENSSSCG00000006371) #19	TSTD1 (ENSSSCG00000006370) #20	F11R (ENSSSCG00000006369) #21	ENSSSCG00000031806	ENSSSCG00000062362 #22	ENSSSCG00000059629 #22	ENSSSCG00000055244 #22	ENSSSCG00000025885 #22	ENSSSCG00000060485 #22	CD244 (ENSSSCG00000006374) #24	LY9 (ENSSSCG00000006375) #25	ENSSSCG00000006376 #25	SLAMF7 (ENSSSCG00000006378) #26	CD48 (ENSSSCG00000006379) #27	SLAMF1 (ENSSSCG00000006380) #28	CD84 (ENSSSCG00000006381) ##24	SLAMF6 (ENSSSCG00000006382) #29	VANGL2 (ENSSSCG00000006383) #30	NHLH1 (ENSSSCG00000006384) #31	NCSTN (ENSSSCG00000006385) #32	COPA (ENSSSCG00000006386) #34	PEX19 (ENSSSCG00000023091) #35	DCAF8 (ENSSSCG00000006388) #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.a #20	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00950000185781
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757 #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744 #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196.l #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272.c #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083.k #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b.c #27	ENSGT01030000234540.A.a.b.d #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Goat	DUPLICATION
Goat	MODERN SPECIES	22	ADAMTS4 (ENSCHIG00000026815) #10	B4GALT3 (ENSCHIG00000019121) #11	ENSCHIG00000008041 #12	USP21 (ENSCHIG00000018217) #13	UFC1 (ENSCHIG00000020452) #14	ENSCHIG00000025706	NIT1 (ENSCHIG00000007140)	ENSCHIG00000021837 #15	KLHDC9 (ENSCHIG00000016661) #16	NECTIN4 (ENSCHIG00000025508) #17	ARHGAP30 (ENSCHIG00000011200) #18	ENSCHIG00000019631 #19	ENSCHIG00000025683 #20	F11R (ENSCHIG00000021162) #21	ENSCHIG00000013123	ENSCHIG00000001352 #22	ENSCHIG00000027254 #23	ENSCHIG00000025678 #23	ENSCHIG00000011711 #22	ENSCHIG00000014904 #27	SLAMF7 (ENSCHIG00000021635) #26	ENSCHIG00000003401	ENSCHIG00000007433 #25	ENSCHIG00000015987 #25	ENSCHIG00000022290 #24	ENSCHIG00000025292	ENSCHIG00000011600	ENSCHIG00000019395 #27	ENSCHIG00000018067 #27	SLAMF1 (ENSCHIG00000009511) #28	CD84 (ENSCHIG00000020076) ##24
Goat	MODERN SPECIES	22	NHLH1 (ENSCHIG00000012209) #31	VANGL2 (ENSCHIG00000015925) #30	ENSCHIG00000024954 #29	CD84 (ENSCHIG00000020076) ##24	SLAMF1 (ENSCHIG00000009511) #28	ENSCHIG00000018067 #27	ENSCHIG00000019395 #27	ENSCHIG00000011600	ENSCHIG00000025292	ENSCHIG00000022290 #24	ENSCHIG00000015987 #25	ENSCHIG00000007433 #25	ENSCHIG00000003401	SLAMF7 (ENSCHIG00000021635) #26	ENSCHIG00000014904 #27	ENSCHIG00000011711 #22	ENSCHIG00000025678 #23	ENSCHIG00000027254 #23	ENSCHIG00000001352 #22	ENSCHIG00000013123	F11R (ENSCHIG00000021162) #21	ENSCHIG00000025683 #20	ENSCHIG00000019631 #19	ARHGAP30 (ENSCHIG00000011200) #18	NECTIN4 (ENSCHIG00000025508) #17	KLHDC9 (ENSCHIG00000016661) #16	ENSCHIG00000021837 #15	NIT1 (ENSCHIG00000007140)	ENSCHIG00000025706	UFC1 (ENSCHIG00000020452) #14	USP21 (ENSCHIG00000018217) #13
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000154757.bb.a #23	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451 #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
American bison	MODERN SPECIES	3013													ENSBBBG00000000318 #23	ENSBBBG00000023579 #23	ENSBBBG00000023589	ENSBBBG00000023605 #22	LY9 (ENSBBBG00000023648) #25	SLAMF7 (ENSBBBG00000023703) #26	CD48 (ENSBBBG00000023715) #27	SLAMF1 (ENSBBBG00000023726) #28
Bos	ANCESTRAL SPECIES		ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #23	ENSGT00940000153432.B.l.b	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451.g #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37	ENSGT00390000000230
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000154757.bb.a #23	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.a.b.a.b.a	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451.g #34	ENSGT00390000010993 #35
Cow	DUPLICATION
Cow	DUPLICATION
Cow	MODERN SPECIES	22	ADAMTS4 (ENSBTAG00000013210) #10	B4GALT3 (ENSBTAG00000021897) #11	PPOX (ENSBTAG00000021894) #12	USP21 (ENSBTAG00000021893) #13	UFC1 (ENSBTAG00000021705) #14	DEDD (ENSBTAG00000020154)	NIT1 (ENSBTAG00000020153)	PFDN2 (ENSBTAG00000020152) #15	KLHDC9 (ENSBTAG00000020150) #16	NECTIN4 (ENSBTAG00000017877) #17	ARHGAP30 (ENSBTAG00000017875) #18	USF1 (ENSBTAG00000017873) #19	TSTD1 (ENSBTAG00000017856) #20	F11R (ENSBTAG00000017846) #21	ENSBTAG00000050256 #22	ITLN2 (ENSBTAG00000048662) #22	ITLN2 (ENSBTAG00000052308) #23	ENSBTAG00000054271 #23	ENSBTAG00000046231	CD244 (ENSBTAG00000002951) #24	LY9 (ENSBTAG00000002947) #25	ENSBTAG00000010458 #25	SLAMF7 (ENSBTAG00000001197) #26	CD48 (ENSBTAG00000011238) #27	SLAMF1 (ENSBTAG00000007927) #28	ENSBTAG00000051438	CD84 (ENSBTAG00000019033) ##24	SLAMF6 (ENSBTAG00000014368) #29	ENSBTAG00000015741	VANGL2 (ENSBTAG00000006560) #30	NCSTN (ENSBTAG00000004334) #32
Cow	MODERN SPECIES	125																ENSBTAG00000052315 #22
Cow	MODERN SPECIES	22	NDUFS2 (ENSBTAG00000002203) #9	ADAMTS4 (ENSBTAG00000013210) #10	B4GALT3 (ENSBTAG00000021897) #11	PPOX (ENSBTAG00000021894) #12	USP21 (ENSBTAG00000021893) #13	UFC1 (ENSBTAG00000021705) #14	DEDD (ENSBTAG00000020154)	NIT1 (ENSBTAG00000020153)	PFDN2 (ENSBTAG00000020152) #15	KLHDC9 (ENSBTAG00000020150) #16	NECTIN4 (ENSBTAG00000017877) #17	ARHGAP30 (ENSBTAG00000017875) #18	USF1 (ENSBTAG00000017873) #19	TSTD1 (ENSBTAG00000017856) #20	F11R (ENSBTAG00000017846) #21	ENSBTAG00000050256 #22	ITLN2 (ENSBTAG00000048662) #22	ITLN2 (ENSBTAG00000052308) #23	ENSBTAG00000054271 #23	ENSBTAG00000046231	CD244 (ENSBTAG00000002951) #24	LY9 (ENSBTAG00000002947) #25	ENSBTAG00000010458 #25	SLAMF7 (ENSBTAG00000001197) #26	CD48 (ENSBTAG00000011238) #27	SLAMF1 (ENSBTAG00000007927) #28	ENSBTAG00000051438	CD84 (ENSBTAG00000019033) ##24	SLAMF6 (ENSBTAG00000014368) #29	ENSBTAG00000015741	VANGL2 (ENSBTAG00000006560) #30
Bos_a	ANCESTRAL SPECIES	27	ENSGT00390000009529 #9	ENSGT00940000160966 #10	ENSGT00940000158549 #11	ENSGT00390000008744.k #12	ENSGT00940000155545.a #13	ENSGT00390000008196 #14	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272 #15	ENSGT00390000011582 #16	ENSGT00940000157535 #17	ENSGT00940000161411 #18	ENSGT00940000157083 #19	ENSGT00940000161394.m.b #20	ENSGT00940000159186 #21	ENSGT00940000163851 #22	ENSGT00940000154757.cb #23	ENSGT00940000154757.bb.b #23	ENSGT01030000234540.A.a.a #24	ENSGT01030000234540.B.a.a.a.a #25	ENSGT01030000234540.B.a.a.a.b.b.a #26	ENSGT01030000234540.A.a.b #27	ENSGT01030000234540.D #28	ENSGT01030000234540.B.a.a.a.b.b.b ##24	ENSGT01030000234540.B.a.a.a.b.a.a #29	ENSGT00390000012496.b #30	ENSGT00940000162622 #31	ENSGT00390000014633 #32	ENSGT00940000155451.g #34	ENSGT00390000010993 #35	ENSGT00950000182900.D.d.a #37
Domestic yak	MODERN SPECIES	22	APOA2 (ENSBGRG00000001346) #7	NDUFS2 (ENSBGRG00000001256) #9	ADAMTS4 (ENSBGRG00000001210) #10	B4GALT3 (ENSBGRG00000001192) #11	PPOX (ENSBGRG00000001124) #12	USP21 (ENSBGRG00000001019) #13	DEDD (ENSBGRG00000000992)	NIT1 (ENSBGRG00000000965)	PFDN2 (ENSBGRG00000000941) #15	KLHDC9 (ENSBGRG00000000928) #16	NECTIN4 (ENSBGRG00000000904) #17	ARHGAP30 (ENSBGRG00000000881) #18	USF1 (ENSBGRG00000000853) #19	ENSBGRG00000000809 #20	ENSBGRG00000000756 #21	ITLN2 (ENSBGRG00000000698) #22	ENSBGRG00000000625 #23	ENSBGRG00000000569 #23	ENSBGRG00000000537	CD244 (ENSBGRG00000000502) #24	LY9 (ENSBGRG00000000475) #25	ENSBGRG00000000465 #25	SLAMF7 (ENSBGRG00000000343) #26	CD48 (ENSBGRG00000000308) #27	SLAMF1 (ENSBGRG00000000274) #28	CD84 (ENSBGRG00000000252) ##24	ENSBGRG00000000226 #29	ENSBGRG00000000219	VANGL2 (ENSBGRG00000000209) #30	NHLH1 (ENSBGRG00000000190) #31	NCSTN (ENSBGRG00000017046) #32
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000163851 #22
Hedgehog	MODERN SPECIES	14157																ENSEEUG00000010055 #22	HSD17B7 (ENSEEUG00000009944)