Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000154723.b.mb.a.b ##7	ENSGT00940000161821.d.e.a ##8	ENSGT00940000154723.b.mb.a.a #7	ENSGT00940000161821.d.e.b #8	ENSGT00940000155371.m.a.a #9	ENSGT00940000154993.g	ENSGT00940000155371.m.a.b.b #11	ENSGT00940000154993.h	ENSGT00940000155371.n ##9	ENSGT00940000160997 #13	ENSGT00940000162484 #14	ENSGT00940000164957 #15	ENSGT00940000162079 #16	ENSGT00530000064839	ENSGT00940000162450.m.a ##20	ENSGT00940000163287 #22	ENSGT00390000002471 #24	ENSGT00940000160293 #25	ENSGT00890000139566 #26	ENSGT00390000014107.a.b #27	ENSGT00390000008726.h.b #28	ENSGT00940000162975 #29	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #31	ENSGT00920000149187 #32	ENSGT00940000160798 #33	ENSGT00940000155565 #34	ENSGT00940000158338 #37	ENSGT00940000155739.m	ENSGT00390000018295	ENSGT00390000006425
Caprinae	ANCESTRAL SPECIES	16	ENSGT01050000244838.C.b	ENSGT00940000154723.b.mb.a.b ##7	ENSGT00940000161821.d.e.a ##8	ENSGT00940000154723.b.mb.a.a #7	ENSGT00940000161821.d.e.b #8	ENSGT00940000155371.m.a.a #9	ENSGT00940000154993.h	ENSGT00940000155371.m.a.b.b #11	ENSGT00940000155371.m.a.b.a #12	ENSGT00940000160997 #13	ENSGT00940000162484 #14	ENSGT00940000164957 #15	ENSGT00940000162079 #16	ENSGT00530000064839	ENSGT00940000162450.m.b #20	ENSGT00940000163287 #22	ENSGT00950000186153 #23	ENSGT00390000002471 #24	ENSGT00940000160293 #25	ENSGT00890000139566 #26	ENSGT00390000014107.a.b #27	ENSGT00390000008726.h.b #28	ENSGT00940000162975 #29	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #31	ENSGT00920000149187 #32	ENSGT00940000160798 #33	ENSGT00940000155565 #34	ENSGT00940000158338.h #37	ENSGT00940000155739.n	ENSGT00940000158338.g ##37
Goat	MODERN SPECIES	15	ENSCHIG00000025604 #7	ENSCHIG00000013343 #8	DRB3 (ENSCHIG00000015976) #9	ENSCHIG00000008942 #10	ENSCHIG00000014502 #11	ENSCHIG00000018350 #12	HLA-DRA (ENSCHIG00000013201) #13	BTNL2 (ENSCHIG00000020377) #14	ENSCHIG00000018005 #15	ENSCHIG00000023536 #16	ENSCHIG00000003712 #17	ENSCHIG00000010989 #18	ENSCHIG00000008175 #19	ENSCHIG00000014835 #20	ENSCHIG00000023702 #21	NOTCH4 (ENSCHIG00000020645) #22	ENSCHIG00000015064 #23	GPSM3 (ENSCHIG00000020382) #24	PBX2 (ENSCHIG00000021655) #25	AGER (ENSCHIG00000013862) #26	RNF5 (ENSCHIG00000012996) #27	AGPAT1 (ENSCHIG00000018117) #28	EGFL8 (ENSCHIG00000003484) #29	PPT2 (ENSCHIG00000016544) #30	PRRT1 (ENSCHIG00000011487) #31	FKBPL (ENSCHIG00000006792) #32	ATF6B (ENSCHIG00000020389) #33	ENSCHIG00000006565 #34	ENSCHIG00000022140 #35	ENSCHIG00000017158 #36	CYP21A1 (ENSCHIG00000010531) #37
Rambouillet Sheep	MODERN SPECIES	12	BTNL2 (ENSOARG00020022234) #14	ENSOARG00020022352 #15	ENSOARG00020022392 #16	ENSOARG00020022450 ##7	ENSOARG00020022770	ENSOARG00020022798 #17	ENSOARG00020022846 ##20	ENSOARG00020023063	ENSOARG00020023082	ENSOARG00020023119	ENSOARG00020023458	ENSOARG00020023472	ENSOARG00020023491	ENSOARG00020023656 #20	ENSOARG00020024061 ##21	NOTCH4 (ENSOARG00020024075) #22	ENSOARG00020024106 #23	GPSM3 (ENSOARG00020024120) #24	ENSOARG00020024137 #25	AGER (ENSOARG00020024168) #26	RNF5 (ENSOARG00020024339) #27	AGPAT1 (ENSOARG00020024349) #28	EGFL8 (ENSOARG00020024385) #29	PPT2 (ENSOARG00020006336) #30	PRRT1 (ENSOARG00020006414) #31	FKBPL (ENSOARG00020006493) #32	ATF6B (ENSOARG00020006528) #33	ENSOARG00020006742 #34	ENSOARG00020006932 #34	ENSOARG00020007064 #37	ENSOARG00020007257
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000154723.b.nb.c.a ##7	ENSGT00940000161821.d.e.b.a #8	ENSGT00940000155371.m.a.a #9	ENSGT00940000161821.d.e.a ##8	ENSGT00940000154993.g	ENSGT00940000155371.m.a.b.b #11	ENSGT00940000154993.h	ENSGT00940000155371.n ##9	ENSGT00940000160997 #13	ENSGT00940000162484.b #14	ENSGT00940000164957 #15	ENSGT00940000162079 #16	ENSGT00530000064839	ENSGT00940000162450.m.a ##20	ENSGT00940000162450.m.b #20	ENSGT00940000163287 #22	ENSGT00390000002471 #24	ENSGT00940000160293 #25	ENSGT00890000139566 #26	ENSGT00390000014107.a.b #27	ENSGT00390000008726.h.b #28	ENSGT00940000162975 #29	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #31	ENSGT00920000149187 #32	ENSGT00940000160798 #33	ENSGT00940000155565 #34	ENSGT00940000158338 #37	ENSGT00940000155739.m	ENSGT00390000018295	ENSGT00390000006425
Bos	ANCESTRAL SPECIES	17	ENSGT00940000155371.m.a.a #9	ENSGT00940000154723.b.nb.c.a ##7	ENSGT00940000161821.d.e.a ##8	ENSGT00940000154993.g	ENSGT00940000155371.m.a.b.b #11	ENSGT00940000155371.m.a.b.a #12	ENSGT00940000155371.n ##9	ENSGT00940000160997 #13	ENSGT00940000162484.b #14	ENSGT00940000164957 #15	ENSGT00940000162079 #16	ENSGT00940000160531.k.a.a #18	ENSGT00530000064839	ENSGT00940000162450.m.a ##20	ENSGT00940000162450.m.b #20	ENSGT00940000163287 #22	ENSGT00390000002471 #24	ENSGT00940000160293 #25	ENSGT00890000139566 #26	ENSGT00390000014107.a.b #27	ENSGT00390000008726.h.b #28	ENSGT00940000162975 #29	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #31	ENSGT00920000149187 #32	ENSGT00940000160798 #33	ENSGT00940000155565 #34	ENSGT00940000158338.e #37	ENSGT00940000155739.m.b	ENSGT00940000158338.f #37	ENSGT00940000155739.m.a
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000155371.m.a.a #9	ENSGT00940000154723.b.nb.c.a ##7	ENSGT00940000161821.d.e.a ##8	ENSGT00940000154993.g	ENSGT00940000155371.m.a.b.b #11	ENSGT00940000155371.m.a.b.a #12	ENSGT00940000155371.n ##9	ENSGT00940000160997 #13	ENSGT00940000162484.b #14	ENSGT00940000164957 #15	ENSGT00940000162079 #16	ENSGT00940000160531.k.a.a #18	ENSGT00530000064839	ENSGT00940000162450.m.a ##20	ENSGT00940000162450.m.b #20	ENSGT00940000163287 #22	ENSGT00390000002471 #24	ENSGT00940000160293 #25	ENSGT00890000139566 #26	ENSGT00390000014107.a.b #27	ENSGT00390000008726.h.b #28	ENSGT00940000162975 #29	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #31	ENSGT00920000149187 #32	ENSGT00940000160798 #33	ENSGT00940000155565 #34	ENSGT00940000158338.e #37	ENSGT00940000155739.m.a	ENSGT00390000018295	ENSGT00390000006425
Domestic yak	MODERN SPECIES	16	ELOVL5 (ENSBGRG00000019509)	HLA-DQB1 (ENSBGRG00000019265) #7	ENSBGRG00000019169 #8	ENSBGRG00000019125 #9	ENSBGRG00000019110	ENSBGRG00000019049 #11	ENSBGRG00000018905 #12	ENSBGRG00000018854 ##9	HLA-DRA (ENSBGRG00000018800) #13	BTNL2 (ENSBGRG00000018646) #14	ENSBGRG00000018591 #15	ENSBGRG00000018483 #16	ENSBGRG00000018457 #18	ENSBGRG00000018134	ENSBGRG00000017781 ##20	NOTCH4 (ENSBGRG00000017319) #22	GPSM3 (ENSBGRG00000017222) #24	PBX2 (ENSBGRG00000017069) #25	AGER (ENSBGRG00000016340) #26	RNF5 (ENSBGRG00000016219) #27	AGPAT1 (ENSBGRG00000016130) #28	EGFL8 (ENSBGRG00000015858) #29	PPT2 (ENSBGRG00000015672) #30	PRRT1 (ENSBGRG00000015598) #31	ENSBGRG00000015556 #31	FKBPL (ENSBGRG00000015529) #32	ATF6B (ENSBGRG00000026072) #33	CYP21A2 (ENSBGRG00000025952) #37	ENSBGRG00000021276	STK19 (ENSBGRG00000021014)	DXO (ENSBGRG00000020987)
Wild yak	MODERN SPECIES	1307															ENSBMUG00000023681 #20	ENSBMUG00000023651 #22	ENSBMUG00000023621	GPSM3 (ENSBMUG00000023610) #24	PBX2 (ENSBMUG00000023588) #25	AGER (ENSBMUG00000023555) #26	RNF5 (ENSBMUG00000023524) #27	AGPAT1 (ENSBMUG00000023512) #28	EGFL8 (ENSBMUG00000023501) #29	PPT2 (ENSBMUG00000023484) #30	PRRT1 (ENSBMUG00000023456) #31	FKBPL (ENSBMUG00000023445) #32	ATF6B (ENSBMUG00000023424) #33	ENSBMUG00000023408 #34	ENSBMUG00000023359 #34	CYP21A2 (ENSBMUG00000023340) #37
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000154723.b.mb.a.a.b #7	ENSGT00940000161821.d.e.b.a #8	ENSGT00940000155371.m.a.a #9	ENSGT00940000155371.m.a.b.b #11	ENSGT00940000155371.m.a.b.a #12	ENSGT00940000155371.n ##9	ENSGT00940000160997 #13	ENSGT00940000162484.b #14	ENSGT00940000164957 #15	ENSGT00940000162079 #16	ENSGT00940000160531.k.b #18	ENSGT00940000160531.k.a.a #18	ENSGT00530000064839	ENSGT00940000162450.n ##20	ENSGT00940000162450.m.b #20	ENSGT00940000163287 #22	ENSGT00390000002471 #24	ENSGT00940000160293 #25	ENSGT00890000139566 #26	ENSGT00390000014107.a.b #27	ENSGT00390000008726.h.b #28	ENSGT00940000162975 #29	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #31	ENSGT00920000149187 #32	ENSGT00940000160798 #33	ENSGT00940000155565 #34	ENSGT00940000158338.e #37	ENSGT00940000155739.m.b	ENSGT00940000158338.f #37	ENSGT00940000155739.m.a
Hybrid Bos Indicus	MODERN SPECIES	15	ELOVL5 (ENSBIXG00005024171)	ENSBIXG00005024073 #9	ENSBIXG00005023918 #8	ENSBIXG00005004075 #11	HLA-DRA (ENSBIXG00005022380) #13	ENSBIXG00005022362 #14	ENSBIXG00005022334 #15	ENSBIXG00005003803 #16	ENSBIXG00005022296 #18	ENSBIXG00005022279 #14	ENSBIXG00005003784 #18	ENSBIXG00005022207 #18	ENSBIXG00005022183	ENSBIXG00005022112 #20	ENSBIXG00005003747 ##20	NOTCH4 (ENSBIXG00005022062) #22	ENSBIXG00005007165 #25	AGER (ENSBIXG00005021980) #26	RNF5 (ENSBIXG00005021905) #27	AGPAT1 (ENSBIXG00005021884) #28	EGFL8 (ENSBIXG00005003684) #29	PPT2 (ENSBIXG00005021848) #30	PRRT1 (ENSBIXG00005021799) #31	FKBPL (ENSBIXG00005021781) #32	ATF6B (ENSBIXG00005021743) #33	ENSBIXG00005002620 #34	ENSBIXG00005021584 #34	CYP21A2 (ENSBIXG00005003635) #37	ENSBIXG00005021336	ENSBIXG00005021205	ENSBIXG00005003217
Cow	MODERN SPECIES	15	BLA-DQB (ENSBTAG00000019588) #7	ENSBTAG00000037605 #8	ENSBTAG00000013919 #9	ENSBTAG00000048364 #11	ENSBTAG00000038397 #12	ENSBTAG00000015565 ##9	BOLA-DRA (ENSBTAG00000010645) #13	BTNL2 (ENSBTAG00000034939) #14	ENSBTAG00000034945 #15	ENSBTAG00000007618 #16	ENSBTAG00000026163 #17	ENSBTAG00000050817 #17	ENSBTAG00000023541	ENSBTAG00000048304 ##20	ENSBTAG00000023563 #20	NOTCH4 (ENSBTAG00000025424) #22	GPSM3 (ENSBTAG00000054438) #24	PBX2 (ENSBTAG00000014421) #25	AGER (ENSBTAG00000014420) #26	RNF5 (ENSBTAG00000025413) #27	AGPAT1 (ENSBTAG00000004442) #28	EGFL8 (ENSBTAG00000025410) #29	PPT2 (ENSBTAG00000004436) #30	PRRT1 (ENSBTAG00000038904) #31	FKBPL (ENSBTAG00000037781) #32	ATF6B (ENSBTAG00000008794) #33	TNXB (ENSBTAG00000001444) #34	CYP21A2 (ENSBTAG00000047039) #37	ENSBTAG00000006864	CYP21A1P (ENSBTAG00000001443) #37	C4A (ENSBTAG00000037533)
American bison	MODERN SPECIES	2893																NOTCH4 (ENSBBBG00000015474) #22	GPSM3 (ENSBBBG00000015448) #24	PBX2 (ENSBBBG00000015435) #25	AGER (ENSBBBG00000008119) #26	RNF5 (ENSBBBG00000015358) #27	AGPAT1 (ENSBBBG00000015346) #28	EGFL8 (ENSBBBG00000003507) #29	PPT2 (ENSBBBG00000001278) #30	PRRT1 (ENSBBBG00000001390) #31	FKBPL (ENSBBBG00000001403) #32	ATF6B (ENSBBBG00000015316) #33	ENSBBBG00000015271 #34