Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00940000157293	ENSGT00940000160499	ENSGT00940000162353	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000155371.m.a.a	ENSGT00940000155371.m.a.b.b	ENSGT00940000154993 #16	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00500000046149	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00940000160499	ENSGT00940000162353	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000155371.m.a.a	ENSGT00940000154993 #16	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.b	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00500000046149	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00940000154526.h #7	ENSGT00940000164319	ENSGT00940000161750	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000155371.m.a.b.a	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00500000046149	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000154526.h #7	ENSGT00940000161750	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000154993 #16	ENSGT00940000155371.m.a.a	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000162079 #20	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00500000046149	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000158206.o.a	ENSGT00940000154526.h #7	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000154993 #16	ENSGT00940000155371.m.a.a	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000162079 #20	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00500000046149	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000158206.o.a	ENSGT00940000154526.h #7	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000154993 #16	ENSGT00940000155371.m.a.a	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000162079 #20	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00500000046149	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000154526.h #7	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000154993.e #16	ENSGT00940000155371.m.a.a	ENSGT00940000154993.f #17	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000162079 #20	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37	ENSGT00390000018295
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000154526.h #7	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000154993.e #16	ENSGT00940000155371.m.a.a	ENSGT00940000154993.f #17	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000162079 #20	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT01030000235045 #36	ENSGT00940000155739 #37	ENSGT00390000018295
Narwhal	MODERN SPECIES	310	ENSMMNG00015015404 #7	GSTA4 (ENSMMNG00015015395) #8	CILK1 (ENSMMNG00015015375) #9	FBXO9 (ENSMMNG00015015321) #10	GCM1 (ENSMMNG00015015289) #11	ENSMMNG00015015268 #12	ELOVL5 (ENSMMNG00015015252) #13	HLA-DQB1 (ENSMMNG00015015225) #14	ENSMMNG00015015207 #15	ENSMMNG00015015196 #16	ENSMMNG00015015182 #17	HLA-DRA (ENSMMNG00015015171) #18	BTNL2 (ENSMMNG00015015138) #19	ENSMMNG00015015107 #20	ENSMMNG00015015093 #21	NOTCH4 (ENSMMNG00015015065) #22	GPSM3 (ENSMMNG00015015037) #23	PBX2 (ENSMMNG00015015017) #24	AGER (ENSMMNG00015014962) #25	RNF5 (ENSMMNG00015014925) #26	AGPAT1 (ENSMMNG00015014906) #27	EGFL8 (ENSMMNG00015014887) #28	PRRT1 (ENSMMNG00015014874) #29	PPT2 (ENSMMNG00015014844) #30	FKBPL (ENSMMNG00015014822) #31	ATF6B (ENSMMNG00015014753) #32	ENSMMNG00015014694 #33	ENSMMNG00015014671 #34	CYP21A2 (ENSMMNG00015014640) #35	ENSMMNG00015014625 #36	ENSMMNG00015014582 #37
Beluga whale	MODERN SPECIES	79															ENSDLEG00000018490 #21	ENSDLEG00000018475 #22	ENSDLEG00000018466 #23	PBX2 (ENSDLEG00000018456) #24	AGER (ENSDLEG00000018409) #25	RNF5 (ENSDLEG00000018391) #26	AGPAT1 (ENSDLEG00000018378) #27	EGFL8 (ENSDLEG00000018342) #28	PPT2 (ENSDLEG00000018277) #30	PRRT1 (ENSDLEG00000018264) #29	FKBPL (ENSDLEG00000018254) #31	ATF6B (ENSDLEG00000018231) #32	ENSDLEG00000018118 #33	CYP21A2 (ENSDLEG00000018038) #35	ENSDLEG00000017976 #37	STK19 (ENSDLEG00000017929)	DXO (ENSDLEG00000017864)
Vaquita	MODERN SPECIES	2	TRAM2 (ENSPSNG00000013712)	ENSPSNG00000013758	ENSPSNG00000013816 #7	GSTA4 (ENSPSNG00000013846) #8	CILK1 (ENSPSNG00000013951) #9	FBXO9 (ENSPSNG00000014029) #10	GCM1 (ENSPSNG00000014108) #11	ELOVL5 (ENSPSNG00000014225) #13	ENSPSNG00000014305 #12	HLA-DQB1 (ENSPSNG00000014402) #14	ENSPSNG00000014515 #15	ENSPSNG00000014600 #16	ENSPSNG00000014710	HLA-DRA (ENSPSNG00000014755) #18	BTNL2 (ENSPSNG00000014856) #19	NOTCH4 (ENSPSNG00000015128) #22	GPSM3 (ENSPSNG00000015580) #23	PBX2 (ENSPSNG00000015639) #24	AGER (ENSPSNG00000015846) #25	RNF5 (ENSPSNG00000016007) #26	AGPAT1 (ENSPSNG00000016058) #27	EGFL8 (ENSPSNG00000016101) #28	PPT2 (ENSPSNG00000016143) #30	PRRT1 (ENSPSNG00000016194) #29	FKBPL (ENSPSNG00000016258) #31	ATF6B (ENSPSNG00000016300) #32	TNXB (ENSPSNG00000016562) #33	CYP21A2 (ENSPSNG00000016707) #35	ENSPSNG00000017716 #37	STK19 (ENSPSNG00000022076)	DXO (ENSPSNG00000022097)
Sperm whale	MODERN SPECIES	9	EFHC1 (ENSPCTG00005004508)	TRAM2 (ENSPCTG00005004651)	TMEM14A (ENSPCTG00005004702)	ENSPCTG00005004724 #7	GSTA4 (ENSPCTG00005004750) #8	CILK1 (ENSPCTG00005004767) #9	ENSPCTG00005004822	ENSPCTG00005004880 #15	ELOVL5 (ENSPCTG00005004916) #13	GCM1 (ENSPCTG00005004942) #11	FBXO9 (ENSPCTG00005004996) #10	ENSPCTG00005005163	HLA-DRA (ENSPCTG00005005185) #18	BTNL2 (ENSPCTG00005005240) #19	ENSPCTG00005005409	NOTCH4 (ENSPCTG00005005574) #22	GPSM3 (ENSPCTG00005005690) #23	PBX2 (ENSPCTG00005005716) #24	AGER (ENSPCTG00005005806) #25	RNF5 (ENSPCTG00005006394) #26	AGPAT1 (ENSPCTG00005006431) #27	EGFL8 (ENSPCTG00005006445) #28	PPT2 (ENSPCTG00005006476) #30	PRRT1 (ENSPCTG00005006536) #29	ATF6B (ENSPCTG00005006590) #32	ENSPCTG00005006857 #33	ENSPCTG00005006895 #33	CYP21A2 (ENSPCTG00005006933) #35	ENSPCTG00005007209 #37	STK19 (ENSPCTG00005007999)	DXO (ENSPCTG00005008018)
Blue whale	MODERN SPECIES	2	ENSBMSG00010015322	GSTA4 (ENSBMSG00010015291) #8	CILK1 (ENSBMSG00010015250) #9	FBXO9 (ENSBMSG00010015186) #10	GCM1 (ENSBMSG00010015146) #11	ELOVL5 (ENSBMSG00010015116) #13	ENSBMSG00010015089 #15	ENSBMSG00010015021	ENSBMSG00010014110	ENSBMSG00010013869	HLA-DRA (ENSBMSG00010022141) #18	BTNL2 (ENSBMSG00010022137) #19	ENSBMSG00010022130 #20	ENSBMSG00010022129	ENSBMSG00010022117 #21	NOTCH4 (ENSBMSG00010022108) #22	GPSM3 (ENSBMSG00010022104) #23	ENSBMSG00010022102 #24	AGER (ENSBMSG00010022088) #25	RNF5 (ENSBMSG00010022082) #26	AGPAT1 (ENSBMSG00010022078) #27	EGFL8 (ENSBMSG00010022072) #28	PPT2 (ENSBMSG00010022064) #30	PRRT1 (ENSBMSG00010022059) #29	FKBPL (ENSBMSG00010022055) #31	ATF6B (ENSBMSG00010022046) #32	ENSBMSG00010022037 #33	ENSBMSG00010022030 #33	CYP21A2 (ENSBMSG00010022029) #35	ENSBMSG00010019596 #37	STK19 (ENSBMSG00010018908)
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000164319	ENSGT00940000154526.h.n #7	ENSGT00940000161750	ENSGT00940000162778 #8	ENSGT00940000158807 #9	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450.m.a #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT00940000155739 #37	ENSGT00390000018295	ENSGT00390000006425
Percora_a	ANCESTRAL SPECIES	12	ENSGT00390000014256 #10	ENSGT00390000006777.a #11	ENSGT01050000244838.C.b #13	ENSGT00940000161821.d.e.a #15	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d.e.b #15	ENSGT00940000155371.m.a.b.b	ENSGT00940000154993 #16	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450.m.a #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT00940000155739 #37	ENSGT00390000018295	ENSGT00390000006425
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000154723.b.mb.a.b #14	ENSGT00940000161821.d.e.a #15	ENSGT00940000154723.b.mb.a.a #14	ENSGT00940000161821.d.e.b #15	ENSGT00940000155371.m.a.a	ENSGT00940000154993.g #16	ENSGT00940000155371.m.a.b.b	ENSGT00940000154993.h #16	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450.m.a #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT00940000155739.m #37	ENSGT00390000018295	ENSGT00390000006425
Caprinae	ANCESTRAL SPECIES	16	ENSGT01050000244838.C.b #13	ENSGT00940000154723.b.mb.a.b #14	ENSGT00940000161821.d.e.a #15	ENSGT00940000154723.b.mb.a.a #14	ENSGT00940000161821.d.e.b #15	ENSGT00940000155371.m.a.a	ENSGT00940000154993.h #16	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.a.b.a	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450.m.b #21	ENSGT00940000163287 #22	ENSGT00950000186153	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338.h #35	ENSGT00940000155739.n #37	ENSGT00940000158338.g #35
Rambouillet Sheep	MODERN SPECIES	12	BTNL2 (ENSOARG00020022234) #19	ENSOARG00020022352	ENSOARG00020022392 #20	ENSOARG00020022450 #14	ENSOARG00020022770	ENSOARG00020022798	ENSOARG00020022846 #21	ENSOARG00020023063	ENSOARG00020023082	ENSOARG00020023119	ENSOARG00020023458	ENSOARG00020023472	ENSOARG00020023491	ENSOARG00020023656 #21	ENSOARG00020024061	NOTCH4 (ENSOARG00020024075) #22	ENSOARG00020024106	GPSM3 (ENSOARG00020024120) #23	ENSOARG00020024137 #24	AGER (ENSOARG00020024168) #25	RNF5 (ENSOARG00020024339) #26	AGPAT1 (ENSOARG00020024349) #27	EGFL8 (ENSOARG00020024385) #28	PPT2 (ENSOARG00020006336) #30	PRRT1 (ENSOARG00020006414) #29	FKBPL (ENSOARG00020006493) #31	ATF6B (ENSOARG00020006528) #32	ENSOARG00020006742 #33	ENSOARG00020006932 #33	ENSOARG00020007064 #35	ENSOARG00020007257 #37
Goat	MODERN SPECIES	15	ENSCHIG00000025604 #14	ENSCHIG00000013343 #15	DRB3 (ENSCHIG00000015976)	ENSCHIG00000008942	ENSCHIG00000014502	ENSCHIG00000018350	HLA-DRA (ENSCHIG00000013201) #18	BTNL2 (ENSCHIG00000020377) #19	ENSCHIG00000018005	ENSCHIG00000023536 #20	ENSCHIG00000003712	ENSCHIG00000010989	ENSCHIG00000008175	ENSCHIG00000014835 #21	ENSCHIG00000023702	NOTCH4 (ENSCHIG00000020645) #22	ENSCHIG00000015064	GPSM3 (ENSCHIG00000020382) #23	PBX2 (ENSCHIG00000021655) #24	AGER (ENSCHIG00000013862) #25	RNF5 (ENSCHIG00000012996) #26	AGPAT1 (ENSCHIG00000018117) #27	EGFL8 (ENSCHIG00000003484) #28	PPT2 (ENSCHIG00000016544) #30	PRRT1 (ENSCHIG00000011487) #29	FKBPL (ENSCHIG00000006792) #31	ATF6B (ENSCHIG00000020389) #32	ENSCHIG00000006565 #33	ENSCHIG00000022140 #33	ENSCHIG00000017158 #33	CYP21A1 (ENSCHIG00000010531) #35
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000154723.b.nb.c.a #14	ENSGT00940000161821.d.e.b.a #15	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d.e.a #15	ENSGT00940000154993.g #16	ENSGT00940000155371.m.a.b.b	ENSGT00940000154993.h #16	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484.b #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450.m.a #21	ENSGT00940000162450.m.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT00940000155739.m #37	ENSGT00390000018295	ENSGT00390000006425
Bos	ANCESTRAL SPECIES	17	ENSGT00940000155371.m.a.a	ENSGT00940000154723.b.nb.c.a #14	ENSGT00940000161821.d.e.a #15	ENSGT00940000154993.g #16	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.a.b.a	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484.b #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00940000160531.k.a.a	ENSGT00530000064839	ENSGT00940000162450.m.a #21	ENSGT00940000162450.m.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338.e #35	ENSGT00940000155739.m.b #37	ENSGT00940000158338.f #35	ENSGT00940000155739.m.a #37
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000155371.m.a.a	ENSGT00940000154723.b.nb.c.a #14	ENSGT00940000161821.d.e.a #15	ENSGT00940000154993.g #16	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.a.b.a	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484.b #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00940000160531.k.a.a	ENSGT00530000064839	ENSGT00940000162450.m.a #21	ENSGT00940000162450.m.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338.e #35	ENSGT00940000155739.m.a #37	ENSGT00390000018295	ENSGT00390000006425
Domestic yak	MODERN SPECIES	16	ELOVL5 (ENSBGRG00000019509) #13	HLA-DQB1 (ENSBGRG00000019265) #14	ENSBGRG00000019169 #15	ENSBGRG00000019125	ENSBGRG00000019110	ENSBGRG00000019049	ENSBGRG00000018905	ENSBGRG00000018854	HLA-DRA (ENSBGRG00000018800) #18	BTNL2 (ENSBGRG00000018646) #19	ENSBGRG00000018591	ENSBGRG00000018483 #20	ENSBGRG00000018457	ENSBGRG00000018134	ENSBGRG00000017781 #21	NOTCH4 (ENSBGRG00000017319) #22	GPSM3 (ENSBGRG00000017222) #23	PBX2 (ENSBGRG00000017069) #24	AGER (ENSBGRG00000016340) #25	RNF5 (ENSBGRG00000016219) #26	AGPAT1 (ENSBGRG00000016130) #27	EGFL8 (ENSBGRG00000015858) #28	PPT2 (ENSBGRG00000015672) #30	PRRT1 (ENSBGRG00000015598) #29	ENSBGRG00000015556 #29	FKBPL (ENSBGRG00000015529) #31	ATF6B (ENSBGRG00000026072) #32	CYP21A2 (ENSBGRG00000025952) #35	ENSBGRG00000021276 #37	STK19 (ENSBGRG00000021014)	DXO (ENSBGRG00000020987)
Wild yak	MODERN SPECIES	1307															ENSBMUG00000023681 #21	ENSBMUG00000023651 #22	ENSBMUG00000023621	GPSM3 (ENSBMUG00000023610) #23	PBX2 (ENSBMUG00000023588) #24	AGER (ENSBMUG00000023555) #25	RNF5 (ENSBMUG00000023524) #26	AGPAT1 (ENSBMUG00000023512) #27	EGFL8 (ENSBMUG00000023501) #28	PPT2 (ENSBMUG00000023484) #30	PRRT1 (ENSBMUG00000023456) #29	FKBPL (ENSBMUG00000023445) #31	ATF6B (ENSBMUG00000023424) #32	ENSBMUG00000023408 #33	ENSBMUG00000023359 #33	CYP21A2 (ENSBMUG00000023340) #35
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000154723.b.mb.a.a.b #14	ENSGT00940000161821.d.e.b.a #15	ENSGT00940000155371.m.a.a	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.a.b.a	ENSGT00940000155371.n	ENSGT00940000160997 #18	ENSGT00940000162484.b #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00940000160531.k.b	ENSGT00940000160531.k.a.a	ENSGT00530000064839	ENSGT00940000162450.n #21	ENSGT00940000162450.m.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338.e #35	ENSGT00940000155739.m.b #37	ENSGT00940000158338.f #35	ENSGT00940000155739.m.a #37
Hybrid Bos Indicus	MODERN SPECIES	15	ELOVL5 (ENSBIXG00005024171) #13	ENSBIXG00005024073	ENSBIXG00005023918 #15	ENSBIXG00005004075	HLA-DRA (ENSBIXG00005022380) #18	ENSBIXG00005022362 #19	ENSBIXG00005022334	ENSBIXG00005003803 #20	ENSBIXG00005022296	ENSBIXG00005022279 #19	ENSBIXG00005003784	ENSBIXG00005022207	ENSBIXG00005022183	ENSBIXG00005022112 #21	ENSBIXG00005003747 #21	NOTCH4 (ENSBIXG00005022062) #22	ENSBIXG00005007165 #24	AGER (ENSBIXG00005021980) #25	RNF5 (ENSBIXG00005021905) #26	AGPAT1 (ENSBIXG00005021884) #27	EGFL8 (ENSBIXG00005003684) #28	PPT2 (ENSBIXG00005021848) #30	PRRT1 (ENSBIXG00005021799) #29	FKBPL (ENSBIXG00005021781) #31	ATF6B (ENSBIXG00005021743) #32	ENSBIXG00005002620 #33	ENSBIXG00005021584 #33	CYP21A2 (ENSBIXG00005003635) #35	ENSBIXG00005021336 #37	ENSBIXG00005021205 #37	ENSBIXG00005003217
Cow	MODERN SPECIES	15	BLA-DQB (ENSBTAG00000019588) #14	ENSBTAG00000037605 #15	ENSBTAG00000013919	ENSBTAG00000048364	ENSBTAG00000038397	ENSBTAG00000015565	BOLA-DRA (ENSBTAG00000010645) #18	BTNL2 (ENSBTAG00000034939) #19	ENSBTAG00000034945	ENSBTAG00000007618 #20	ENSBTAG00000026163	ENSBTAG00000050817	ENSBTAG00000023541	ENSBTAG00000048304 #21	ENSBTAG00000023563 #21	NOTCH4 (ENSBTAG00000025424) #22	GPSM3 (ENSBTAG00000054438) #23	PBX2 (ENSBTAG00000014421) #24	AGER (ENSBTAG00000014420) #25	RNF5 (ENSBTAG00000025413) #26	AGPAT1 (ENSBTAG00000004442) #27	EGFL8 (ENSBTAG00000025410) #28	PPT2 (ENSBTAG00000004436) #30	PRRT1 (ENSBTAG00000038904) #29	FKBPL (ENSBTAG00000037781) #31	ATF6B (ENSBTAG00000008794) #32	TNXB (ENSBTAG00000001444) #33	CYP21A2 (ENSBTAG00000047039) #35	ENSBTAG00000006864 #37	CYP21A1P (ENSBTAG00000001443) #35	C4A (ENSBTAG00000037533) #37
American bison	MODERN SPECIES	2893																NOTCH4 (ENSBBBG00000015474) #22	GPSM3 (ENSBBBG00000015448) #23	PBX2 (ENSBBBG00000015435) #24	AGER (ENSBBBG00000008119) #25	RNF5 (ENSBBBG00000015358) #26	AGPAT1 (ENSBBBG00000015346) #27	EGFL8 (ENSBBBG00000003507) #28	PPT2 (ENSBBBG00000001278) #30	PRRT1 (ENSBBBG00000001390) #29	FKBPL (ENSBBBG00000001403) #31	ATF6B (ENSBBBG00000015316) #32	ENSBBBG00000015271 #33
Siberian musk deer	MODERN SPECIES	355	FBXO9 (ENSMMSG00000007357) #10	GCM1 (ENSMMSG00000007462) #11	ELOVL5 (ENSMMSG00000007510) #13	ENSMMSG00000007625 #14	ENSMMSG00000007750 #15	ENSMMSG00000007817	ENSMMSG00000007866	HLA-DRA (ENSMMSG00000008073) #18	BTNL2 (ENSMMSG00000008103) #19	ENSMMSG00000008139	ENSMMSG00000008192 #20	ENSMMSG00000008239	ENSMMSG00000008273	ENSMMSG00000008300	ENSMMSG00000008495 #21	NOTCH4 (ENSMMSG00000009064) #22	GPSM3 (ENSMMSG00000009294) #23	PBX2 (ENSMMSG00000009196) #24	AGER (ENSMMSG00000009349) #25	RNF5 (ENSMMSG00000009500) #26	AGPAT1 (ENSMMSG00000009528) #27	EGFL8 (ENSMMSG00000009551) #28	PPT2 (ENSMMSG00000009585) #30	PRRT1 (ENSMMSG00000009635) #29	FKBPL (ENSMMSG00000009704) #31	ATF6B (ENSMMSG00000009725) #32	ENSMMSG00000009851 #33	ENSMMSG00000009900 #33	CYP21A2 (ENSMMSG00000009963) #35	ENSMMSG00000010458 #37	STK19 (ENSMMSG00000014515)
Yarkand deer	MODERN SPECIES	30	CILK1 (ENSCHYG00000001256) #9	FBXO9 (ENSCHYG00000001319) #10	GCM1 (ENSCHYG00000001431) #11	ELOVL5 (ENSCHYG00000001467) #13	ENSCHYG00000001614 #14	ENSCHYG00000001738 ##15	ENSCHYG00000001781	ENSCHYG00000001806	HLA-DRA (ENSCHYG00000001842) #18	BTNL2 (ENSCHYG00000001866) #19	ENSCHYG00000001895	ENSCHYG00000001920 #20	ENSCHYG00000001951	ENSCHYG00000001990	ENSCHYG00000002058	NOTCH4 (ENSCHYG00000002090) #22	GPSM3 (ENSCHYG00000002151) #23	PBX2 (ENSCHYG00000002165) #24	AGER (ENSCHYG00000002222) #25	RNF5 (ENSCHYG00000002334) #26	AGPAT1 (ENSCHYG00000002353) #27	EGFL8 (ENSCHYG00000002368) #28	PPT2 (ENSCHYG00000002395) #30	PRRT1 (ENSCHYG00000002421) #29	FKBPL (ENSCHYG00000002435) #31	ATF6B (ENSCHYG00000002484) #32	ENSCHYG00000002680 #33	ENSCHYG00000002703 #33	STK19 (ENSCHYG00000002722)	DXO (ENSCHYG00000002741)	SKIC2 (ENSCHYG00000002793)
Camelidae	ANCESTRAL SPECIES	13	ENSGT00940000157293	ENSGT00940000160499	ENSGT00940000162353	ENSGT00940000154723.b.jb #14	ENSGT00940000155371.m.b	ENSGT00940000154723.b.ib #14	ENSGT00940000161821.d #15	ENSGT00940000155371.m.a.a	ENSGT00940000155371.m.a.b.a	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00530000064839	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT00940000155739 #37	ENSGT00390000018295	ENSGT00390000006425
Arabian camel	MODERN SPECIES	12	ENSCDRG00005021472 #14	ENSCDRG00005021469 #15	ENSCDRG00005021466	TAP2 (ENSCDRG00005021460)	ENSCDRG00005021455 #14	ENSCDRG00005021452 #14	ENSCDRG00005021448 #15	ENSCDRG00005021439	ENSCDRG00005021434	HLA-DRA (ENSCDRG00005021429) #18	BTNL2 (ENSCDRG00005021424) #19	ENSCDRG00005021419	ENSCDRG00005021416 #20	ENSCDRG00005021411	ENSCDRG00005021398 #21	NOTCH4 (ENSCDRG00005021381) #22	GPSM3 (ENSCDRG00005021372) #23	PBX2 (ENSCDRG00005021366) #24	AGER (ENSCDRG00005021314) #25	RNF5 (ENSCDRG00005021302) #26	AGPAT1 (ENSCDRG00005021300) #27	EGFL8 (ENSCDRG00005021294) #28	PPT2 (ENSCDRG00005021287) #30	ENSCDRG00005021285	ENSCDRG00005021283 #29	FKBPL (ENSCDRG00005021280) #31	ATF6B (ENSCDRG00005021251) #32	ENSCDRG00005021242 #33	ENSCDRG00005021235 #33	CYP21A2 (ENSCDRG00005021227) #35	ENSCDRG00005013954 #37
Suina	ANCESTRAL SPECIES	17	ENSGT00940000157293	ENSGT00940000160499	ENSGT00940000162353	ENSGT00940000154723.b #14	ENSGT00940000161821.d #15	ENSGT00940000155371.m.a.a	ENSGT00940000155371.n	ENSGT00940000154993 #16	ENSGT00940000160997 #18	ENSGT00940000162484 #19	ENSGT00940000164957	ENSGT00940000162079 #20	ENSGT00940000153527.c.c.b	ENSGT00530000064839	ENSGT00940000162450 #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975 #28	ENSGT00940000155779.a.b #30	ENSGT00940000162382 #29	ENSGT00920000149187 #31	ENSGT00940000160798 #32	ENSGT00940000155565 #33	ENSGT00940000158338 #35	ENSGT00940000155739 #37	ENSGT00390000018295	ENSGT00390000006425
Pig	MODERN SPECIES	15	ENSSSCG00000001456 #15	ENSSSCG00000001455	ENSSSCG00000061569	ENSSSCG00000031336	ENSSSCG00000061450	HLA-DRA (ENSSSCG00000001453) #18	BTNL2 (ENSSSCG00000025071) #19	ENSSSCG00000027921 #20	ENSSSCG00000033414	ENSSSCG00000030874	ENSSSCG00000038892	ENSSSCG00000001444	ENSSSCG00000038570	ENSSSCG00000030901 #21	ENSSSCG00000001441 #21	NOTCH4 (ENSSSCG00000001440) #22	GPSM3 (ENSSSCG00000001439) #23	PBX2 (ENSSSCG00000001438) #24	AGER (ENSSSCG00000001437) #25	RNF5 (ENSSSCG00000001436) #26	AGPAT1 (ENSSSCG00000001435) #27	EGFL8 (ENSSSCG00000001434) #28	PPT2 (ENSSSCG00000001433) #30	PRRT1 (ENSSSCG00000024403) #29	FKBPL (ENSSSCG00000001431) #31	ATF6B (ENSSSCG00000001430) #32	TNXB (ENSSSCG00000023611) #33	CYP21A2 (ENSSSCG00000001428) #35	C4A (ENSSSCG00000001427) #37	STK19 (ENSSSCG00000001426)	DXO (ENSSSCG00000001425)
Chacoan peccary	MODERN SPECIES	782	PSMB8 (ENSCWAG00000016617)	TAP2 (ENSCWAG00000016671)	ENSCWAG00000016717	ENSCWAG00000016773	HLA-DQB1 (ENSCWAG00000016835) #14	ENSCWAG00000016903 #15	ENSCWAG00000016932	ENSCWAG00000016954 #16	HLA-DRA (ENSCWAG00000016997) #18	BTNL2 (ENSCWAG00000017038) #19	ENSCWAG00000017173	ENSCWAG00000017259 #20	ENSCWAG00000017301	ENSCWAG00000017332	ENSCWAG00000017375 #21	NOTCH4 (ENSCWAG00000017439) #22	GPSM3 (ENSCWAG00000017614) #23	PBX2 (ENSCWAG00000017651) #24	AGER (ENSCWAG00000017683) #25	RNF5 (ENSCWAG00000018055) #26	AGPAT1 (ENSCWAG00000018095) #27	EGFL8 (ENSCWAG00000018129) #28	PPT2 (ENSCWAG00000018194) #30	PRRT1 (ENSCWAG00000018228) #29	FKBPL (ENSCWAG00000018256) #31	ATF6B (ENSCWAG00000018282) #32	TNXB (ENSCWAG00000018517) #33	CYP21A2 (ENSCWAG00000019083) #35	ENSCWAG00000019207 #37	STK19 (ENSCWAG00000019629)	DXO (ENSCWAG00000019694)