Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000153385.b.a.b #11	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381 #12	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b	ENSGT00940000162892	ENSGT00940000154993 #18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338 #33	ENSGT01030000235045	ENSGT00940000155739 #35	ENSGT00390000018295 #36
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381 #12	ENSGT00390000004757.`b.a	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338 #33	ENSGT01030000235045	ENSGT00940000155739 #35	ENSGT00390000018295 #36
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000154993.m.a.a ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33	ENSGT01030000235045	ENSGT00940000158338.j ##33
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00390000004757.`b.a	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a.b	ENSGT00940000154723.b.m.b	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000154993.m.a.a ##18	ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33	ENSGT01030000235045	ENSGT00940000158338.i.a.a ##33
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a ##18	ENSGT00940000154723.b.m.b	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.a.a.b.a.b ##18	ENSGT00940000154993.m.b ##18	ENSGT00940000154993.m.a.a.b.b ##18	ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33	ENSGT01030000235045	ENSGT00940000158338.i.a.a ##33
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a ##18	ENSGT00940000154723.b.m.b	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b.a.b ##18	ENSGT00940000154993.m.a.a.b.b ##18	ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00950000183123.h.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33	ENSGT01030000235045	ENSGT00940000155739 #35
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000161157	ENSGT00940000160381 #12	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a ##18	ENSGT00940000154993.m.b.a.b ##18	ENSGT00940000154993.m.a.a.b.b ##18	ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00950000183123.h.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000155739.k #35	ENSGT00390000018295 #36	ENSGT00390000006425
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000159762 #7	ENSGT00940000162498.k #8	ENSGT00940000162112 #10	ENSGT00940000153385.b.a.b.qc.b #11	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381 #12	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154993.m.a.b #18	ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00950000183123.h.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000155739.k #35	ENSGT00390000018295 #36	ENSGT00390000006425
Rhesus	MODERN SPECIES	14	COL11A2 (ENSMMUG00000003850) #7	ENSMMUG00000019371 #8	ENSMMUG00000041095 #9	MAMU-DOA (ENSMMUG00000015734) #10	BRD2 (ENSMMUG00000023138) #11	MAMU-DMB (ENSMMUG00000022626) #12	ENSMMUG00000063291 #13	PSMB9 (ENSMMUG00000011304) #14	PSMB8 (ENSMMUG00000011301) #15	MAMU-DOB (ENSMMUG00000011293) #16	ENSMMUG00000054826 #17	MAMU-DRB1 (ENSMMUG00000029799) #18	MAMU-DRA (ENSMMUG00000039082) #19	TSBP1 (ENSMMUG00000018425) #20	ENSMMUG00000029402 #21	NOTCH4 (ENSMMUG00000018461) #22	GPSM3 (ENSMMUG00000018459) #23	PBX2 (ENSMMUG00000018456) #24	AGER (ENSMMUG00000018442) #25	RNF5 (ENSMMUG00000018438) #26	AGPAT1 (ENSMMUG00000018434) #27	EGFL8 (ENSMMUG00000018432) #28	PRRT1 (ENSMMUG00000016647) #29	FKBPL (ENSMMUG00000015230) #30	ATF6B (ENSMMUG00000015229) #31	TNXB (ENSMMUG00000000758) #32	CYP21A2 (ENSMMUG00000000755) #33	ENSMMUG00000049499 #34	ENSMMUG00000059791 #35	STK19 (ENSMMUG00000000747) #36	SKIC2 (ENSMMUG00000000736) #37
Crab-eating macaque	MODERN SPECIES	14	BRD2 (ENSMFAG00000037520) #11	ENSMFAG00000060572	HLA-DMA (ENSMFAG00000042109)	HLA-DMB (ENSMFAG00000004018) #12	PSMB9 (ENSMFAG00000038128) #14	TAP1 (ENSMFAG00000041369) #15	TAP2 (ENSMFAG00000037139) #16	HLA-DOB (ENSMFAG00000003652)	HLA-DQA1 (ENSMFAG00000002949)	ENSMFAG00000054107	HLA-DRB5 (ENSMFAG00000000676) #18	ENSMFAG00000058962 ##18	HLA-DRA (ENSMFAG00000032157) #19	ENSMFAG00000033140 #20	ENSMFAG00000049929	ENSMFAG00000033054 #22	RNF5 (ENSMFAG00000033282) #26	ENSMFAG00000059430	GPSM3 (ENSMFAG00000044173) #23	PBX2 (ENSMFAG00000045367) #24	AGER (ENSMFAG00000038314) #25	AGPAT1 (ENSMFAG00000042426) #27	EGFL8 (ENSMFAG00000062553)	PPT2 (ENSMFAG00000018625) #28	PRRT1 (ENSMFAG00000032011) #29	FKBPL (ENSMFAG00000006509) #30	ATF6B (ENSMFAG00000041028) #31	ENSMFAG00000002351 #32	ENSMFAG00000053747 #32	CYP21A2 (ENSMFAG00000002347) ##33	ENSMFAG00000059643 #32
Pig-tailed macaque	MODERN SPECIES	259																NOTCH4 (ENSMNEG00000040340) #22	GPSM3 (ENSMNEG00000021060) #23	PBX2 (ENSMNEG00000036830) #24	AGER (ENSMNEG00000033032) #25	RNF5 (ENSMNEG00000036496) #26	AGPAT1 (ENSMNEG00000031513) #27	PPT2 (ENSMNEG00000039844) #28	PRRT1 (ENSMNEG00000042871) #29	FKBPL (ENSMNEG00000004346) #30	ATF6B (ENSMNEG00000028753) #31	ENSMNEG00000040667 #32	ENSMNEG00000019225 #33	ENSMNEG00000041718 #35	STK19 (ENSMNEG00000040878) #36	DXO (ENSMNEG00000032201)	SKIC2 (ENSMNEG00000044474) #37
Cercopithecinae_b	ANCESTRAL SPECIES	49													ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00950000183123.h.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33	ENSGT01030000235045	ENSGT00940000155739 #35	ENSGT00390000018295 #36
Cercopithecinae_d	ANCESTRAL SPECIES	104													ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00950000183123.h.b #21	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33	ENSGT01030000235045	ENSGT00940000155739 #35	ENSGT00390000018295 #36
Sooty mangabey	MODERN SPECIES	432													HLA-DRA (ENSCATG00000045179) #19	TSBP1 (ENSCATG00000036525) #20	ENSCATG00000021833 #21	NOTCH4 (ENSCATG00000038747) #22	GPSM3 (ENSCATG00000008535) #23	PBX2 (ENSCATG00000027532) #24	AGER (ENSCATG00000035406) #25	RNF5 (ENSCATG00000029632) #26	AGPAT1 (ENSCATG00000036720) #27	PPT2 (ENSCATG00000036240) #28	PRRT1 (ENSCATG00000034775) #29	FKBPL (ENSCATG00000017791) #30	ATF6B (ENSCATG00000030679) #31	TNXB (ENSCATG00000031834) #32	CYP21A2 (ENSCATG00000031244) #33
Drill	MODERN SPECIES	1628														ENSMLEG00000037625 #20	ENSMLEG00000033654	NOTCH4 (ENSMLEG00000028646) #22	GPSM3 (ENSMLEG00000043901) #23	PBX2 (ENSMLEG00000035885) #24	AGER (ENSMLEG00000000793) #25	RNF5 (ENSMLEG00000037504) #26	AGPAT1 (ENSMLEG00000040906) #27	PPT2 (ENSMLEG00000038664) #28	PRRT1 (ENSMLEG00000018414) #29	FKBPL (ENSMLEG00000001506) #30	ATF6B (ENSMLEG00000033677) #31	ENSMLEG00000036725 #32	ENSMLEG00000036279 ##33	ENSMLEG00000038415
Vervet Monkey	MODERN SPECIES	8	ENSCSAG00000009461	ENSCSAG00000009455 #8	HLA-DOA (ENSCSAG00000009452) #10	BRD2 (ENSCSAG00000009445) #11	HLA-DMA (ENSCSAG00000009436)	HLA-DMB (ENSCSAG00000009430) #12	PSMB9 (ENSCSAG00000009427) #14	TAP1 (ENSCSAG00000009417) #15	PSMB8 (ENSCSAG00000009409)	HLA-DOB (ENSCSAG00000009402)	HLA-DQB1 (ENSCSAG00000009394)	HLA-DQA1 (ENSCSAG00000009389)	HLA-DRB1 (ENSCSAG00000009383) ##18	ENSCSAG00000009375	HLA-DRA (ENSCSAG00000009368) #19	NOTCH4 (ENSCSAG00000009351) #22	GPSM3 (ENSCSAG00000009326) #23	PBX2 (ENSCSAG00000009322) #24	AGER (ENSCSAG00000009312) #25	RNF5 (ENSCSAG00000009301) #26	AGPAT1 (ENSCSAG00000009289) #27	PPT2 (ENSCSAG00000009272) #28	PRRT1 (ENSCSAG00000009248) #29	FKBPL (ENSCSAG00000019309) #30	ATF6B (ENSCSAG00000009237) #31	TNXB (ENSCSAG00000009220) #32	CYP21A2 (ENSCSAG00000009155) ##33	ENSCSAG00000009110 #35	STK19 (ENSCSAG00000009027) #36	DXO (ENSCSAG00000009007)	SKIC2 (ENSCSAG00000008988) #37
Rhinopithecus	ANCESTRAL SPECIES	177	ENSGT00940000160381 #12	ENSGT00390000004757.`b.a.a	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000154723.b.m.b	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000154993.m.a.a ##18	ENSGT00940000160997 #19	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565.pc #32	ENSGT00940000158338.i.a.b.b #33
Golden snub-nosed monkey	MODERN SPECIES	693							HLA-DOB (ENSRROG00000037331)	HLA-DQB1 (ENSRROG00000040533)	HLA-DQA1 (ENSRROG00000035459)	HLA-DRB5 (ENSRROG00000035007) #18	ENSRROG00000043372 ##18	HLA-DRB1 (ENSRROG00000044917) ##18	HLA-DRA (ENSRROG00000040020) #19	TSBP1 (ENSRROG00000030352) #20	ENSRROG00000016019	NOTCH4 (ENSRROG00000031561) #22	GPSM3 (ENSRROG00000031880) #23	PBX2 (ENSRROG00000037305) #24	AGER (ENSRROG00000035653) #25	RNF5 (ENSRROG00000038881) #26	AGPAT1 (ENSRROG00000032643) #27	PPT2 (ENSRROG00000029929) #28	PRRT1 (ENSRROG00000021974) #29	FKBPL (ENSRROG00000005462) #30	ATF6B (ENSRROG00000011018) #31	ENSRROG00000040476 #32	ENSRROG00000031640 #33
Black snub-nosed monkey	MODERN SPECIES	1969												HLA-DRB5 (ENSRBIG00000038672) #18	HLA-DRB1 (ENSRBIG00000034191) ##18	HLA-DRA (ENSRBIG00000032211) #19	TSBP1 (ENSRBIG00000030528) #20	NOTCH4 (ENSRBIG00000029510) #22	GPSM3 (ENSRBIG00000026023) #23	PBX2 (ENSRBIG00000035306) #24	ENSRBIG00000035455 #25	RNF5 (ENSRBIG00000036002) #26	AGPAT1 (ENSRBIG00000030064) #27	PPT2 (ENSRBIG00000038686) #28	PRRT1 (ENSRBIG00000034242) #29	FKBPL (ENSRBIG00000029305) #30	ATF6B (ENSRBIG00000022367) #31	ENSRBIG00000039806 #32	ENSRBIG00000041573 #33	ENSRBIG00000034988	CYP21A2 (ENSRBIG00000010273) ##33	ENSRBIG00000029440
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000154993.m.a.a ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.j ##33	ENSGT01030000235045	ENSGT00940000158338.i.a.b #33	ENSGT00940000158338.i.b ##33
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160381 #12	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.j ##33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a ##18	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.j ##33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a ##18	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.j ##33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425
Pan	ANCESTRAL SPECIES	5	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #14	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.n	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #18	ENSGT00940000154993.m.b ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b.w #26	ENSGT00390000008726.h.b #27	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338.j ##33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425	ENSGT00940000158255 #37
Chimpanzee	MODERN SPECIES	19	TAP1 (ENSPTRG00000018023) #15	PSMB8 (ENSPTRG00000018022)	TAP2 (ENSPTRG00000018021) #16	PATR-DOB (ENSPTRG00000018020)	HLA-DQB2 (ENSPTRG00000023404)	HLA-DQA2 (ENSPTRG00000034186)	HLA-DQB1 (ENSPTRG00000018018)	HLA-DQA1 (ENSPTRG00000018017)	PATR-DQB1 (ENSPTRG00000018001) ##18	ENSPTRG00000051243 ##18	PATR-DRB5 (ENSPTRG00000023735) #18	PATR-DRA (ENSPTRG00000018016) #19	BTNL2 (ENSPTRG00000043663)	ENSPTRG00000044399 ##21	TSBP1 (ENSPTRG00000018014) #20	NOTCH4 (ENSPTRG00000034379) #22	GPSM3 (ENSPTRG00000023968) #23	PBX2 (ENSPTRG00000018012) #24	RNF5 (ENSPTRG00000018010) #26	AGER (ENSPTRG00000018011) #25	AGPAT1 (ENSPTRG00000018009) #27	PPT2 (ENSPTRG00000018008) #28	PRRT1 (ENSPTRG00000018007) #29	FKBPL (ENSPTRG00000018006) #30	ENSPTRG00000034357 #31	ENSPTRG00000018003 #32	ENSPTRG00000045997 ##33	ENSPTRG00000052093 #32	ENSPTRG00000042453 ##33	ENSPTRG00000044552 #35	ENSPTRG00000045611 #35
Bonobo	MODERN SPECIES	19	PSMB9 (ENSPPAG00000038623) #14	TAP1 (ENSPPAG00000029436) #15	PSMB8 (ENSPPAG00000042377)	TAP2 (ENSPPAG00000033938) #16	HLA-DOB (ENSPPAG00000027428)	HLA-DQB2 (ENSPPAG00000041341)	HLA-DQA2 (ENSPPAG00000038014)	HLA-DQB1 (ENSPPAG00000041275)	ENSPPAG00000019881	ENSPPAG00000039594 #18	ENSPPAG00000036652 ##18	ENSPPAG00000029790 ##18	HLA-DRA (ENSPPAG00000041818) #19	ENSPPAG00000038384	ENSPPAG00000034948 #20	NOTCH4 (ENSPPAG00000030396) #22	GPSM3 (ENSPPAG00000035669) #23	PBX2 (ENSPPAG00000039908) #24	AGER (ENSPPAG00000028489) #25	ENSPPAG00000036819 #26	AGPAT1 (ENSPPAG00000039426) #27	PPT2 (ENSPPAG00000043555) #28	PRRT1 (ENSPPAG00000033990) #29	FKBPL (ENSPPAG00000024362) #30	ATF6B (ENSPPAG00000033378) #31	ENSPPAG00000042311 #32	ENSPPAG00000043471 ##33	ENSPPAG00000032907 #35	ENSPPAG00000036454 #36	DXO (ENSPPAG00000041236)	SKIC2 (ENSPPAG00000040211) #37
Human	MODERN SPECIES	18	TAP1 (ENSG00000168394) #15	PSMB9 (ENSG00000240065) #14	PSMB8 (ENSG00000204264)	TAP2 (ENSG00000204267) #16	ENSG00000250264	HLA-DOB (ENSG00000241106)	HLA-DQB2 (ENSG00000232629)	HLA-DQA2 (ENSG00000237541)	HLA-DQB1 (ENSG00000179344)	HLA-DQA1 (ENSG00000196735)	HLA-DRB1 (ENSG00000196126) ##18	HLA-DRB5 (ENSG00000198502) #18	HLA-DRA (ENSG00000204287) #19	BTNL2 (ENSG00000204290)	TSBP1 (ENSG00000204296) #20	NOTCH4 (ENSG00000204301) #22	GPSM3 (ENSG00000213654) #23	PBX2 (ENSG00000204304) #24	AGER (ENSG00000204305) #25	RNF5 (ENSG00000204308) #26	AGPAT1 (ENSG00000204310) #27	EGFL8 (ENSG00000241404)	PPT2 (ENSG00000221988) #28	ENSG00000285085	PRRT1 (ENSG00000204314) #29	FKBPL (ENSG00000204315) #30	ATF6B (ENSG00000213676) #31	TNXB (ENSG00000168477) #32	CYP21A2 (ENSG00000231852) ##33	C4B (ENSG00000224389) #35	C4A (ENSG00000244731) #35
Gorilla	MODERN SPECIES	19	HLA-DMB (ENSGGOG00000022404) #12	PSMB9 (ENSGGOG00000010965) #14	TAP1 (ENSGGOG00000010958) #15	PSMB8 (ENSGGOG00000010953)	TAP2 (ENSGGOG00000010941) #16	HLA-DOB (ENSGGOG00000043194)	HLA-DQB2 (ENSGGOG00000014413)	ENSGGOG00000037744	HLA-DQB1 (ENSGGOG00000004252)	HLA-DQA1 (ENSGGOG00000013538)	ENSGGOG00000000700 ##18	HLA-DRB5 (ENSGGOG00000037929) #18	HLA-DRA (ENSGGOG00000009861) #19	BTNL2 (ENSGGOG00000009855)	TSBP1 (ENSGGOG00000040681) #20	NOTCH4 (ENSGGOG00000002332) #22	GPSM3 (ENSGGOG00000002329) #23	PBX2 (ENSGGOG00000002325) #24	AGER (ENSGGOG00000002323) #25	RNF5 (ENSGGOG00000002320) #26	AGPAT1 (ENSGGOG00000002319) #27	PPT2 (ENSGGOG00000002317) #28	PRRT1 (ENSGGOG00000023683) #29	FKBPL (ENSGGOG00000004877) #30	ATF6B (ENSGGOG00000004870) #31	ENSGGOG00000012983 #32	ENSGGOG00000012976 ##33	ENSGGOG00000043529 #35	ENSGGOG00000041546 #32	CYP21A2 (ENSGGOG00000042419) ##33	ENSGGOG00000039460 #35
Orangutan	MODERN SPECIES	19	ENSPPYG00000031820	ENSPPYG00000017227	HLA-DMB (ENSPPYG00000017226) #12	PSMB9 (ENSPPYG00000017225) #14	TAP1 (ENSPPYG00000017224) #15	PSMB8 (ENSPPYG00000017223)	TAP2 (ENSPPYG00000017222) #16	HLA-DOB (ENSPPYG00000017221)	HLA-DQB2 (ENSPPYG00000017220)	HLA-DQA2 (ENSPPYG00000017219)	ENSPPYG00000017216 ##18	HLA-DRB1 (ENSPPYG00000016490) ##18	HLA-DRA (ENSPPYG00000017234) #19	BTNL2 (ENSPPYG00000017215)	TSBP1 (ENSPPYG00000016489) #20	NOTCH4 (ENSPPYG00000016488) #22	GPSM3 (ENSPPYG00000016487) #23	PBX2 (ENSPPYG00000016486) #24	AGER (ENSPPYG00000016485) #25	RNF5 (ENSPPYG00000016484) #26	AGPAT1 (ENSPPYG00000016483) #27	EGFL8 (ENSPPYG00000041054)	PPT2 (ENSPPYG00000016482) #28	ENSPPYG00000016481 #29	FKBPL (ENSPPYG00000016480) #30	ATF6B (ENSPPYG00000016479) #31	ENSPPYG00000016478 #32	ENSPPYG00000016476 ##33	ENSPPYG00000040445	ENSPPYG00000016474 #36	DXO (ENSPPYG00000016473)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000159023 #15	ENSGT00940000157293	ENSGT00940000160499 #16	ENSGT00940000162353	ENSGT00940000154723.b.l.b	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n ##18	ENSGT00940000154723.b.k	ENSGT00940000162892.a.b	ENSGT00940000154723.b.l.a.a	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338 #33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425
Cebidae	ANCESTRAL SPECIES	39												ENSGT00940000154993.n.b ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338 #33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425
Cebidae_a	ANCESTRAL SPECIES	80												ENSGT00940000154993.n.b ##18	ENSGT00940000160997 #19	ENSGT00940000162484	ENSGT00530000064839 #20	ENSGT00940000163287 #22	ENSGT00390000002471 #23	ENSGT00940000160293 #24	ENSGT00890000139566 #25	ENSGT00390000014107.a.b #26	ENSGT00390000008726.h.b #27	ENSGT00940000162975	ENSGT00940000155779.a.b #28	ENSGT00940000162382 #29	ENSGT00920000149187 #30	ENSGT00940000160798 #31	ENSGT00940000155565 #32	ENSGT00940000158338 #33	ENSGT00940000155739 #35	ENSGT00390000018295 #36	ENSGT00390000006425
Capuchin	MODERN SPECIES	24	PSMB8 (ENSCCAG00000026335)	TAP2 (ENSCCAG00000035497) #16	HLA-DOB (ENSCCAG00000034021)	ENSCCAG00000028168	ENSCCAG00000023824	ENSCCAG00000025088	HLA-DQA2 (ENSCCAG00000023549)	HLA-DRB1 (ENSCCAG00000025004) ##18	ENSCCAG00000024284 ##18	ENSCCAG00000033580 ##18	HLA-DRA (ENSCCAG00000027271) #19	BTNL2 (ENSCCAG00000037406)	TSBP1 (ENSCCAG00000034222) #20	ENSCCAG00000029507	GPSM3 (ENSCCAG00000026910) #23	NOTCH4 (ENSCCAG00000025076) #22	PBX2 (ENSCCAG00000034408) #24	AGER (ENSCCAG00000034328) #25	RNF5 (ENSCCAG00000000285) #26	AGPAT1 (ENSCCAG00000034849) #27	EGFL8 (ENSCCAG00000036500)	PPT2 (ENSCCAG00000001478) #28	PRRT1 (ENSCCAG00000026817) #29	FKBPL (ENSCCAG00000020416) #30	ATF6B (ENSCCAG00000023021) #31	TNXB (ENSCCAG00000027168) #32	CYP21A2 (ENSCCAG00000024263) #33	ENSCCAG00000028298 #35	STK19 (ENSCCAG00000026720) #36	DXO (ENSCCAG00000036575)	SKIV2L (ENSCCAG00000026206) #37
Bolivian squirrel monkey	MODERN SPECIES	252										ENSSBOG00000013373 ##18	ENSSBOG00000030119 ##18	ENSSBOG00000034096 ##18	HLA-DRA (ENSSBOG00000018669) #19	BTNL2 (ENSSBOG00000020010)	TSBP1 (ENSSBOG00000029494) #20	NOTCH4 (ENSSBOG00000000265) #22	ENSSBOG00000024823 #23	PBX2 (ENSSBOG00000035127) #24	AGER (ENSSBOG00000025263) #25	RNF5 (ENSSBOG00000024979) #26	AGPAT1 (ENSSBOG00000029818) #27	EGFL8 (ENSSBOG00000027721)	PPT2 (ENSSBOG00000021673) #28	ENSSBOG00000030972 #29	ATF6B (ENSSBOG00000021738) #31	TNXB (ENSSBOG00000010738) #32	CYP21A2 (ENSSBOG00000034162) #33	ENSSBOG00000021536 #35	STK19 (ENSSBOG00000033781) #36	DXO (ENSSBOG00000035395)	SKIC2 (ENSSBOG00000027920) #37
Marmoset	MODERN SPECIES	16	ENSCJAG00000042232	ENSCJAG00000072632	ENSCJAG00000047812	ENSCJAG00000083244	ENSCJAG00000010588	ENSCJAG00000082116	ENSCJAG00000087310	ENSCJAG00000070665	ENSCJAG00000021549	ENSCJAG00000079721	ENSCJAG00000082938	ENSCJAG00000078556	ENSCJAG00000079011 ##18	HLA-DRA (ENSCJAG00000047567) #19	BTNL2 (ENSCJAG00000001722)	NOTCH4 (ENSCJAG00000001787) #22	PBX2 (ENSCJAG00000001886) #24	AGER (ENSCJAG00000001904) #25	ENSCJAG00000001948 #26	AGPAT1 (ENSCJAG00000044488) #27	ENSCJAG00000001969	PRRT1 (ENSCJAG00000002001) #29	FKBPL (ENSCJAG00000002003) #30	ATF6B (ENSCJAG00000036009) #31	TNXB (ENSCJAG00000002050) #32	CYP21A2 (ENSCJAG00000002074) #33	ENSCJAG00000068335 #35	STK19 (ENSCJAG00000002228) #36	DXO (ENSCJAG00000002246)	NELFE (ENSCJAG00000002368)	SKIC2 (ENSCJAG00000002263) #37
Tarsier	MODERN SPECIES	6303															ENSTSYG00000033499	NOTCH4 (ENSTSYG00000034861) #22	GPSM3 (ENSTSYG00000031581) #24	AGER (ENSTSYG00000005684) #25	RNF5 (ENSTSYG00000032989) #26	AGPAT1 (ENSTSYG00000032006) #27	EGFL8 (ENSTSYG00000019339)	PPT2 (ENSTSYG00000002885) #28	ENSTSYG00000031616 #29	ATF6B (ENSTSYG00000003325) #31	TNXB (ENSTSYG00000013164) #32	CYP21A2 (ENSTSYG00000013158) #33	ENSTSYG00000006110 #35	STK19 (ENSTSYG00000036103) #36	DXO (ENSTSYG00000037337)	SKIV2L (ENSTSYG00000012133) #37	NELFE (ENSTSYG00000012132)