Pecora	ANCESTRAL SPECIES	22				ENSGT00390000009310 #7	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b ##25	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.a #25	ENSGT00940000158759 #26	ENSGT00910000147945	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a #34
Percora_a	ANCESTRAL SPECIES	15				ENSGT00390000009310 #7	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b ##25	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.a #25	ENSGT00940000158759 #26	ENSGT00910000147945	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a #34
Bovidae	ANCESTRAL SPECIES	15				ENSGT00390000009310 #7	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b ##25	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.a #25	ENSGT00940000158759 #26	ENSGT00910000147945	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a #34
Bovinae	ANCESTRAL SPECIES	12	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01010000222906.f #11	ENSGT00390000004755.sb.b	ENSGT00390000005568.gb.b.a.a #12	ENSGT01100000264093	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b ##25	ENSGT01070000254179	ENSGT00940000158759 #26	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a.u #34	ENSGT00940000161204 #35	ENSGT00940000157024
Bos	ANCESTRAL SPECIES	12	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01010000222906.f #11	ENSGT00390000004755.sb.b	ENSGT00390000005568.gb.b.a.a #12	ENSGT01100000264093	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b ##25	ENSGT00940000158759 #26	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a.u #34	ENSGT00940000161204 #35	ENSGT00940000157024.g.b	ENSGT00940000159193
Bos_a	ANCESTRAL SPECIES	58	ENSGT00390000009310 #7	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01010000222906.f #11	ENSGT00390000004755.sb.b	ENSGT00390000005568.gb.b.a.a #12	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.a.f #25	ENSGT00940000158759 #26	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a.u #34	ENSGT00940000161204 #35	ENSGT00940000157024.g.b	ENSGT00940000157024.h
Domestic yak	MODERN SPECIES	5	TMEM183A (ENSBGRG00000026236) #7	PPFIA4 (ENSBGRG00000026254) #8	MYOG (ENSBGRG00000026269) #9	ENSBGRG00000026271 #10	ENSBGRG00000026277 #11	ENSBGRG00000026283 #12	ADORA1 (ENSBGRG00000026296) #13	MYBPH (ENSBGRG00000026302) #14	CHI3L1 (ENSBGRG00000026316) #15	BTG2 (ENSBGRG00000026320) #16	FMOD (ENSBGRG00000026323) #17	PRELP (ENSBGRG00000007735) #18	OPTC (ENSBGRG00000007805) #19	ATP2B4 (ENSBGRG00000007893) #20	LAX1 (ENSBGRG00000008055) #21	ZBED6 (ENSBGRG00000008085) #22	ENSBGRG00000008107 #23	ENSBGRG00000008286 #24	ENSBGRG00000008312 #25	SOX13 (ENSBGRG00000008403) #26	ETNK2 (ENSBGRG00000008541) #27	REN (ENSBGRG00000008588) #28	ENSBGRG00000008741 #29	ENSBGRG00000008782 #30	PLEKHA6 (ENSBGRG00000008896) #31	PPP1R15B (ENSBGRG00000009635) #32	PIK3C2B (ENSBGRG00000009666) #33	MDM4 (ENSBGRG00000009887) #34	LRRN2 (ENSBGRG00000010207) #35	ENSBGRG00000010225 #36	ENSBGRG00000010247 #37
American bison	MODERN SPECIES	3252	MYOG (ENSBBBG00000017504) #9	ENSBBBG00000017492 #11	ENSBBBG00000017490	ENSBBBG00000007948 #12	ENSBBBG00000017482	ENSBBBG00000017467 #13	ENSBBBG00000017457 #13	MYBPH (ENSBBBG00000006776) #14	CHI3L1 (ENSBBBG00000004313) #15	BTG2 (ENSBBBG00000017412) #16	FMOD (ENSBBBG00000017404) #17	PRELP (ENSBBBG00000008600) #18	OPTC (ENSBBBG00000017375) #19	ATP2B4 (ENSBBBG00000007498) #20	LAX1 (ENSBBBG00000004262) #21	ZBED6 (ENSBBBG00000017218) #22	ENSBBBG00000017210 #23	ENSBBBG00000017110 #24	SNRPE (ENSBBBG00000017104) ##25	ENSBBBG00000017089	SOX13 (ENSBBBG00000017084) #26	ENSBBBG00000017052 #27	ENSBBBG00000017041 #27	REN (ENSBBBG00000017030) #28	ENSBBBG00000017012	GOLT1A (ENSBBBG00000016995) #30	PLEKHA6 (ENSBBBG00000004202) #31	PPP1R15B (ENSBBBG00000007662) #32	PIK3C2B (ENSBBBG00000006769) #33	ENSBBBG00000016701 #34	LRRN2 (ENSBBBG00000008377) #35
Caprinae	ANCESTRAL SPECIES	12				ENSGT00390000009310 #7	ENSGT01050000244900.a.a.a.a.a #8	ENSGT00950000182959.a.b.b.b #9	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063.a #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT00390000012818.o.a.a.a.b ##25	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.a #25	ENSGT00940000158759 #26	ENSGT00910000147945	ENSGT00950000182939.b.a.a #27	ENSGT00940000157898 #28	ENSGT00390000008827 #29	ENSGT00390000014507.b #30	ENSGT00940000159692 #31	ENSGT00940000154404.b #32	ENSGT00940000158263 #33	ENSGT00530000063539.a #34	ENSGT00940000161204 #35
Goat	MODERN SPECIES	7	ENSCHIG00000002879	ENSCHIG00000014347	TMEM183A (ENSCHIG00000019808) #7	PPFIA4 (ENSCHIG00000011499) #8	MYOG (ENSCHIG00000021331) #9	ADORA1 (ENSCHIG00000010182) #13	MYBPH (ENSCHIG00000017519) #14	CHI3L1 (ENSCHIG00000003384) #15	BTG2 (ENSCHIG00000017484) #16	FMOD (ENSCHIG00000026263) #17	PRELP (ENSCHIG00000015209) #18	OPTC (ENSCHIG00000022869) #19	ENSCHIG00000011811	ENSCHIG00000023819 #21	ENSCHIG00000019212 #20	ZBED6 (ENSCHIG00000011089) #22	ENSCHIG00000012149 #23	SNRPE (ENSCHIG00000024013) ##25	SOX13 (ENSCHIG00000012959) #26	ENSCHIG00000018181	ETNK2 (ENSCHIG00000004048) #27	REN (ENSCHIG00000015702) #28	KISS1 (ENSCHIG00000024611) #29	GOLT1A (ENSCHIG00000013932) #30	PLEKHA6 (ENSCHIG00000021840) #31	PPP1R15B (ENSCHIG00000013049) #32	PIK3C2B (ENSCHIG00000021981) #33	MDM4 (ENSCHIG00000010343) #34	LRRN2 (ENSCHIG00000008109) #35	NFASC (ENSCHIG00000011664)	CNTN2 (ENSCHIG00000017645)
Siberian musk deer	MODERN SPECIES	123	ENSMMSG00000002339	ENSMMSG00000002349	TMEM183A (ENSMMSG00000002361) #7	PPFIA4 (ENSMMSG00000002394) #8	MYOG (ENSMMSG00000002431) #9	ADORA1 (ENSMMSG00000002460) #13	MYBPH (ENSMMSG00000002501) #14	CHI3L1 (ENSMMSG00000002538) #15	ENSMMSG00000002558	BTG2 (ENSMMSG00000002581) #16	FMOD (ENSMMSG00000002597) #17	PRELP (ENSMMSG00000002612) #18	OPTC (ENSMMSG00000002629) #19	ATP2B4 (ENSMMSG00000002663) #20	LAX1 (ENSMMSG00000002752) #21	ZBED6 (ENSMMSG00000002768) #22	ENSMMSG00000002783 #23	SNRPE (ENSMMSG00000002813) ##25	ENSMMSG00000002836	SOX13 (ENSMMSG00000002897) #26	ETNK2 (ENSMMSG00000003432) #27	REN (ENSMMSG00000003452) #28	KISS1 (ENSMMSG00000003475) #29	GOLT1A (ENSMMSG00000003486) #30	PLEKHA6 (ENSMMSG00000003529) #31	ENSMMSG00000003648	PPP1R15B (ENSMMSG00000003658) #32	PIK3C2B (ENSMMSG00000003699) #33	MDM4 (ENSMMSG00000003801) #34	ENSMMSG00000004036	AVPR1B (ENSMMSG00000004045)
Yarkand deer	MODERN SPECIES	5					TMEM183A (ENSCHYG00000008917) #7	PPFIA4 (ENSCHYG00000009063) #8	MYOG (ENSCHYG00000009462) #9	ADORA1 (ENSCHYG00000009533) #13	MYBPH (ENSCHYG00000009685) #14	BTG2 (ENSCHYG00000010182) #16	FMOD (ENSCHYG00000010210) #17	PRELP (ENSCHYG00000010271) #18	OPTC (ENSCHYG00000010312) #19	ATP2B4 (ENSCHYG00000010396) #20	LAX1 (ENSCHYG00000010802) #21	ZBED6 (ENSCHYG00000010836) #22	ENSCHYG00000010851 #23	ENSCHYG00000010985	ENSCHYG00000011006 #24	ENSCHYG00000011037 ##25	SOX13 (ENSCHYG00000011156) #26	ETNK2 (ENSCHYG00000011580) #27	REN (ENSCHYG00000011652) #28	KISS1 (ENSCHYG00000011702) #29	GOLT1A (ENSCHYG00000011765) #30	PLEKHA6 (ENSCHYG00000011915) #31	PPP1R15B (ENSCHYG00000013232) #32	PIK3C2B (ENSCHYG00000013288) #33	MDM4 (ENSCHYG00000013701) #34	LRRN2 (ENSCHYG00000015210) #35	ENSCHYG00000015237