Pecora	ANCESTRAL SPECIES	22				ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b #25	ENSGT01070000254179 #26	ENSGT00390000012818.o.a.a.a.a ##25	ENSGT00940000158759 #27	ENSGT00910000147945	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a #36
Percora_a	ANCESTRAL SPECIES	15				ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b #25	ENSGT01070000254179 #26	ENSGT00390000012818.o.a.a.a.a ##25	ENSGT00940000158759 #27	ENSGT00910000147945	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a #36
Bovidae	ANCESTRAL SPECIES	15				ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b #25	ENSGT01070000254179 #26	ENSGT00390000012818.o.a.a.a.a ##25	ENSGT00940000158759 #27	ENSGT00910000147945	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a #36
Bovinae	ANCESTRAL SPECIES	12	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01010000222906.f #8	ENSGT00390000004755.sb.b #9	ENSGT00390000005568.gb.b.a.a #10	ENSGT01100000264093 #11	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b #25	ENSGT01070000254179 #26	ENSGT00940000158759 #27	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a.u #36	ENSGT00940000161204 #37	ENSGT00940000157024
American bison	MODERN SPECIES	3252	MYOG (ENSBBBG00000017504) #7	ENSBBBG00000017492 #8	ENSBBBG00000017490 #9	ENSBBBG00000007948 #10	ENSBBBG00000017482 #11	ENSBBBG00000017467 #12	ENSBBBG00000017457 #13	MYBPH (ENSBBBG00000006776) #14	CHI3L1 (ENSBBBG00000004313) #15	BTG2 (ENSBBBG00000017412) #16	FMOD (ENSBBBG00000017404) #17	PRELP (ENSBBBG00000008600) #18	OPTC (ENSBBBG00000017375) #19	ATP2B4 (ENSBBBG00000007498) #20	LAX1 (ENSBBBG00000004262) #21	ZBED6 (ENSBBBG00000017218) #22	ENSBBBG00000017210 #23	ENSBBBG00000017110 #24	SNRPE (ENSBBBG00000017104) #25	ENSBBBG00000017089 #26	SOX13 (ENSBBBG00000017084) #27	ENSBBBG00000017052 #28	ENSBBBG00000017041 #29	REN (ENSBBBG00000017030) #30	ENSBBBG00000017012 #31	GOLT1A (ENSBBBG00000016995) #32	PLEKHA6 (ENSBBBG00000004202) #33	PPP1R15B (ENSBBBG00000007662) #34	PIK3C2B (ENSBBBG00000006769) #35	ENSBBBG00000016701 #36	LRRN2 (ENSBBBG00000008377) #37
Bos	ANCESTRAL SPECIES	12	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01010000222906.f #8	ENSGT00390000004755.sb.b #9	ENSGT00390000005568.gb.b.a.a #10	ENSGT01100000264093 #11	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.b #25	ENSGT00940000158759 #27	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a.u #36	ENSGT00940000161204 #37	ENSGT00940000157024.g.b	ENSGT00940000159193
Bos_a	ANCESTRAL SPECIES	58	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01010000222906.f #8	ENSGT00390000004755.sb.b #9	ENSGT00390000005568.gb.b.a.a #10	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063 #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.a.f ##25	ENSGT00940000158759 #27	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a.u #36	ENSGT00940000161204 #37	ENSGT00940000157024.g.b	ENSGT00940000157024.h
Domestic yak	MODERN SPECIES	5	TMEM183A (ENSBGRG00000026236)	PPFIA4 (ENSBGRG00000026254)	MYOG (ENSBGRG00000026269) #7	ENSBGRG00000026271 #8	ENSBGRG00000026277 #8	ENSBGRG00000026283 #10	ADORA1 (ENSBGRG00000026296) #13	MYBPH (ENSBGRG00000026302) #14	CHI3L1 (ENSBGRG00000026316) #15	BTG2 (ENSBGRG00000026320) #16	FMOD (ENSBGRG00000026323) #17	PRELP (ENSBGRG00000007735) #18	OPTC (ENSBGRG00000007805) #19	ATP2B4 (ENSBGRG00000007893) #20	LAX1 (ENSBGRG00000008055) #21	ZBED6 (ENSBGRG00000008085) #22	ENSBGRG00000008107 #23	ENSBGRG00000008286 #24	ENSBGRG00000008312 ##25	SOX13 (ENSBGRG00000008403) #27	ETNK2 (ENSBGRG00000008541) #29	REN (ENSBGRG00000008588) #30	ENSBGRG00000008741	ENSBGRG00000008782 #32	PLEKHA6 (ENSBGRG00000008896) #33	PPP1R15B (ENSBGRG00000009635) #34	PIK3C2B (ENSBGRG00000009666) #35	MDM4 (ENSBGRG00000009887) #36	LRRN2 (ENSBGRG00000010207) #37	ENSBGRG00000010225	ENSBGRG00000010247
Caprinae	ANCESTRAL SPECIES	12				ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b #7	ENSGT01030000234555.a.a.b.a.a #13	ENSGT00940000158040 #14	ENSGT00940000161815 #15	ENSGT00950000182952.B #16	ENSGT00940000157007 #17	ENSGT00940000160163 #18	ENSGT00940000154248.a #19	ENSGT00940000154527.a.a.a #20	ENSGT00390000014063.a #21	ENSGT00940000163411 #22	ENSGT00920000149095.a #23	ENSGT00390000012818.o.a.a.a.b #25	ENSGT01010000222851 #24	ENSGT00390000012818.o.a.a.a.a ##25	ENSGT00940000158759 #27	ENSGT00910000147945	ENSGT00950000182939.b.a.a #29	ENSGT00940000157898 #30	ENSGT00390000008827	ENSGT00390000014507.b #32	ENSGT00940000159692 #33	ENSGT00940000154404.b #34	ENSGT00940000158263 #35	ENSGT00530000063539.a #36	ENSGT00940000161204 #37
Goat	MODERN SPECIES	7	ENSCHIG00000002879	ENSCHIG00000014347	TMEM183A (ENSCHIG00000019808)	PPFIA4 (ENSCHIG00000011499)	MYOG (ENSCHIG00000021331) #7	ADORA1 (ENSCHIG00000010182) #13	MYBPH (ENSCHIG00000017519) #14	CHI3L1 (ENSCHIG00000003384) #15	BTG2 (ENSCHIG00000017484) #16	FMOD (ENSCHIG00000026263) #17	PRELP (ENSCHIG00000015209) #18	OPTC (ENSCHIG00000022869) #19	ENSCHIG00000011811	ENSCHIG00000023819 #21	ENSCHIG00000019212 #20	ZBED6 (ENSCHIG00000011089) #22	ENSCHIG00000012149 #23	SNRPE (ENSCHIG00000024013) #25	SOX13 (ENSCHIG00000012959) #27	ENSCHIG00000018181	ETNK2 (ENSCHIG00000004048) #29	REN (ENSCHIG00000015702) #30	KISS1 (ENSCHIG00000024611)	GOLT1A (ENSCHIG00000013932) #32	PLEKHA6 (ENSCHIG00000021840) #33	PPP1R15B (ENSCHIG00000013049) #34	PIK3C2B (ENSCHIG00000021981) #35	MDM4 (ENSCHIG00000010343) #36	LRRN2 (ENSCHIG00000008109) #37	NFASC (ENSCHIG00000011664)	CNTN2 (ENSCHIG00000017645)
Siberian musk deer	MODERN SPECIES	123	ENSMMSG00000002339	ENSMMSG00000002349	TMEM183A (ENSMMSG00000002361)	PPFIA4 (ENSMMSG00000002394)	MYOG (ENSMMSG00000002431) #7	ADORA1 (ENSMMSG00000002460) #13	MYBPH (ENSMMSG00000002501) #14	CHI3L1 (ENSMMSG00000002538) #15	ENSMMSG00000002558	BTG2 (ENSMMSG00000002581) #16	FMOD (ENSMMSG00000002597) #17	PRELP (ENSMMSG00000002612) #18	OPTC (ENSMMSG00000002629) #19	ATP2B4 (ENSMMSG00000002663) #20	LAX1 (ENSMMSG00000002752) #21	ZBED6 (ENSMMSG00000002768) #22	ENSMMSG00000002783 #23	SNRPE (ENSMMSG00000002813) #25	ENSMMSG00000002836	SOX13 (ENSMMSG00000002897) #27	ETNK2 (ENSMMSG00000003432) #29	REN (ENSMMSG00000003452) #30	KISS1 (ENSMMSG00000003475)	GOLT1A (ENSMMSG00000003486) #32	PLEKHA6 (ENSMMSG00000003529) #33	ENSMMSG00000003648	PPP1R15B (ENSMMSG00000003658) #34	PIK3C2B (ENSMMSG00000003699) #35	MDM4 (ENSMMSG00000003801) #36	ENSMMSG00000004036	AVPR1B (ENSMMSG00000004045)
Yarkand deer	MODERN SPECIES	5					TMEM183A (ENSCHYG00000008917)	PPFIA4 (ENSCHYG00000009063)	MYOG (ENSCHYG00000009462) #7	ADORA1 (ENSCHYG00000009533) #13	MYBPH (ENSCHYG00000009685) #14	BTG2 (ENSCHYG00000010182) #16	FMOD (ENSCHYG00000010210) #17	PRELP (ENSCHYG00000010271) #18	OPTC (ENSCHYG00000010312) #19	ATP2B4 (ENSCHYG00000010396) #20	LAX1 (ENSCHYG00000010802) #21	ZBED6 (ENSCHYG00000010836) #22	ENSCHYG00000010851 #23	ENSCHYG00000010985	ENSCHYG00000011006 #24	ENSCHYG00000011037 ##25	SOX13 (ENSCHYG00000011156) #27	ETNK2 (ENSCHYG00000011580) #29	REN (ENSCHYG00000011652) #30	KISS1 (ENSCHYG00000011702)	GOLT1A (ENSCHYG00000011765) #32	PLEKHA6 (ENSCHYG00000011915) #33	PPP1R15B (ENSCHYG00000013232) #34	PIK3C2B (ENSCHYG00000013288) #35	MDM4 (ENSCHYG00000013701) #36	LRRN2 (ENSCHYG00000015210) #37	ENSCHYG00000015237