Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000161543 #7	ENSGT00390000003256 #8	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #16	ENSGT00940000157284 #17	ENSGT00390000001121 #18	ENSGT00940000157084 #20	ENSGT00940000165752 #19	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #26	ENSGT00940000157927 #24	ENSGT00940000159120 #25	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #27	ENSGT00940000158246 #29	ENSGT00390000006786 #30	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36	ENSGT00940000159767
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000161543 #7	ENSGT00390000003256 #8	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #16	ENSGT00940000157284 #17	ENSGT00390000001121 #18	ENSGT00940000157084 #20	ENSGT00940000165752 #19	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #26	ENSGT00940000157927 #24	ENSGT00940000159120 #25	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #27	ENSGT00940000158246 #29	ENSGT00390000006786 #30	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36	ENSGT00940000159767
Bos	ANCESTRAL SPECIES	17	ENSGT00940000161543 #7	ENSGT00390000003256 #8	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #16	ENSGT00940000157284 #17	ENSGT00390000001121 #18	ENSGT00940000157084 #20	ENSGT00940000165752 #19	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #26	ENSGT00940000157927 #24	ENSGT00940000159120 #25	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #27	ENSGT00940000158246 #29	ENSGT00390000006786 #30	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36	ENSGT00940000159767
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000161543 #7	ENSGT00390000003256 #8	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #16	ENSGT00940000157284 #17	ENSGT00390000001121 #18	ENSGT00940000157084 #20	ENSGT00940000165752 #19	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #26	ENSGT00940000157927 #24	ENSGT00940000159120 #25	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #27	ENSGT00940000158246 #29	ENSGT00390000006786 #30	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36	ENSGT00940000159767
Domestic yak	MODERN SPECIES	16	TJAP1 (ENSBGRG00000012682) #7	LRRC73 (ENSBGRG00000012584) #8	YIPF3 (ENSBGRG00000012257) #9	POLR1C (ENSBGRG00000011968) #10	XPO5 (ENSBGRG00000011470) #11	POLH (ENSBGRG00000011380) #12	GTPBP2 (ENSBGRG00000011005) #13	MAD2L1BP (ENSBGRG00000010868) #14	RSPH9 (ENSBGRG00000010763) #15	ENSBGRG00000010432 #16	VEGFA (ENSBGRG00000010227) #17	ENSBGRG00000009813 #18	ENSBGRG00000009756 #19	TMEM63B (ENSBGRG00000008917) #20	ENSBGRG00000008841 #21	MYMX (ENSBGRG00000008830) #22	SLC29A1 (ENSBGRG00000007719) #23	SLC35B2 (ENSBGRG00000007502) #24	NFKBIE (ENSBGRG00000007378) #25	ENSBGRG00000007091 #26	TCTE1 (ENSBGRG00000007036) #27	TMEM151B (ENSBGRG00000006948) #28	AARS2 (ENSBGRG00000025693) #29	SPATS1 (ENSBGRG00000025671) #30	CDC5L (ENSBGRG00000025587) #31	SUPT3H (ENSBGRG00000025521) #32	RUNX2 (ENSBGRG00000025453) #33	CLIC5 (ENSBGRG00000025358) #34	ENPP4 (ENSBGRG00000025340) #35	ENPP5 (ENSBGRG00000025336) #36	ENSBGRG00000025324 #37
Wild yak	MODERN SPECIES	1156	TJAP1 (ENSBMUG00000012199) #7	LRRC73 (ENSBMUG00000012153) #8	YIPF3 (ENSBMUG00000012145) #9	POLR1C (ENSBMUG00000012129) #10	XPO5 (ENSBMUG00000012108) #11	POLH (ENSBMUG00000012084) #12	GTPBP2 (ENSBMUG00000012068) #13	MAD2L1BP (ENSBMUG00000012054) #14	RSPH9 (ENSBMUG00000012049) #15	MRPS18A (ENSBMUG00000012027) #16	ENSBMUG00000011996 #17	MRPL14 (ENSBMUG00000011949) #18	TMEM63B (ENSBMUG00000011927) #20	ENSBMUG00000011908 #19	CAPN11 (ENSBMUG00000011894)	MYMX (ENSBMUG00000011878) #22	SLC29A1 (ENSBMUG00000011739) #23	ENSBMUG00000011676 #26	SLC35B2 (ENSBMUG00000011640) #24	NFKBIE (ENSBMUG00000011601) #25	TCTE1 (ENSBMUG00000011580) #27	TMEM151B (ENSBMUG00000011556) #28	AARS2 (ENSBMUG00000011497) #29	SPATS1 (ENSBMUG00000011457) #30	CDC5L (ENSBMUG00000011426) #31	SUPT3H (ENSBMUG00000011389) #32	ENSBMUG00000011236 #33	CLIC5 (ENSBMUG00000011072) #34
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000161543 #7	ENSGT00390000003256 #8	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #16	ENSGT00940000157284 #17	ENSGT00390000001121 #18	ENSGT00940000157084 #20	ENSGT00940000165752 #19	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #26	ENSGT00940000157927 #24	ENSGT00940000159120 #25	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #27	ENSGT00940000158246 #29	ENSGT00390000006786 #30	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36	ENSGT00940000159767
Cow	MODERN SPECIES	15	LRRC73 (ENSBTAG00000025554) #8	YIPF3 (ENSBTAG00000018967) #9	POLR1C (ENSBTAG00000018969) #10	XPO5 (ENSBTAG00000018970) #11	POLH (ENSBTAG00000006015) #12	GTPBP2 (ENSBTAG00000006016) #13	MAD2L1BP (ENSBTAG00000009548) #14	RSPH9 (ENSBTAG00000009549) #15	MRPS18A (ENSBTAG00000025571) #16	VEGFA (ENSBTAG00000005339) #17	ENSBTAG00000050249	TMEM63B (ENSBTAG00000032680) #20	CAPN11 (ENSBTAG00000021066)	ENSBTAG00000050117 #19	ENSBTAG00000053551	MYMX (ENSBTAG00000049369) #22	SLC29A1 (ENSBTAG00000015131) #23	HSP90AB1 (ENSBTAG00000000778) #26	SLC35B2 (ENSBTAG00000008076) #24	NFKBIE (ENSBTAG00000013705) #25	TMEM151B (ENSBTAG00000050799) #28	ENSBTAG00000050049 #27	AARS2 (ENSBTAG00000013722) #29	SPATS1 (ENSBTAG00000053813) #30	CDC5L (ENSBTAG00000020012) #31	SUPT3H (ENSBTAG00000032887) #32	RUNX2 (ENSBTAG00000004104) #33	CLIC5 (ENSBTAG00000010244) #34	ENPP4 (ENSBTAG00000003499) #35	ENPP5 (ENSBTAG00000015829) #36	RCAN2 (ENSBTAG00000009302)
Hybrid Bos Indicus	MODERN SPECIES	15	DLK2 (ENSBIXG00005007975)	TJAP1 (ENSBIXG00005007955) #7	LRRC73 (ENSBIXG00005007915) #8	YIPF3 (ENSBIXG00005007907) #9	POLR1C (ENSBIXG00005007888) #10	XPO5 (ENSBIXG00005000022) #11	POLH (ENSBIXG00005029268) #12	GTPBP2 (ENSBIXG00005029285) #13	MAD2L1BP (ENSBIXG00005029309) #14	RSPH9 (ENSBIXG00005029313) #15	MRPS18A (ENSBIXG00005029321) #16	VEGFA (ENSBIXG00005029350) #17	ENSBIXG00005029198 #18	TMEM63B (ENSBIXG00005029176) #20	ENSBIXG00005001907 #19	MYMX (ENSBIXG00005029092) #22	SLC29A1 (ENSBIXG00005029077) #23	ENSBIXG00005005101 #26	SLC35B2 (ENSBIXG00005028950) #24	TMEM151B (ENSBIXG00005005053) #28	TCTE1 (ENSBIXG00005028882) #27	AARS2 (ENSBIXG00005002270) #29	SPATS1 (ENSBIXG00005005004) #30	CDC5L (ENSBIXG00005028783) #31	SUPT3H (ENSBIXG00005002363) #32	RUNX2 (ENSBIXG00005028546) #33	CLIC5 (ENSBIXG00005004883) #34	ENPP4 (ENSBIXG00005004865) #35	ENPP5 (ENSBIXG00005028257) #36	RCAN2 (ENSBIXG00005028228)	ENSBIXG00005028148 #37
American bison	MODERN SPECIES	3345	ENSBBBG00000018854	LRRC73 (ENSBBBG00000018869) #8	YIPF3 (ENSBBBG00000004770) #9	POLR1C (ENSBBBG00000018932) #10	XPO5 (ENSBBBG00000018959) #11	POLH (ENSBBBG00000004824) #12	GTPBP2 (ENSBBBG00000004840) #13	MAD2L1BP (ENSBBBG00000004843) #14	RSPH9 (ENSBBBG00000004846) #15	MRPS18A (ENSBBBG00000019022) #16	VEGFA (ENSBBBG00000004895) #17	MRPL14 (ENSBBBG00000019131) #18	TMEM63B (ENSBBBG00000019165) #20	ENSBBBG00000019176 #19	CAPN11 (ENSBBBG00000004944)	MYMX (ENSBBBG00000019201) #22	SLC29A1 (ENSBBBG00000019250) #23	ENSBBBG00000009167 #26	SLC35B2 (ENSBBBG00000005002) #24	NFKBIE (ENSBBBG00000005007) #25	TMEM151B (ENSBBBG00000019315) #28	TCTE1 (ENSBBBG00000005019) #27	AARS2 (ENSBBBG00000005050) #29	SPATS1 (ENSBBBG00000019339) #30	CDC5L (ENSBBBG00000008519) #31	SUPT3H (ENSBBBG00000019372) #32	RUNX2 (ENSBBBG00000005249) #33	CLIC5 (ENSBBBG00000005260) #34	ENPP4 (ENSBBBG00000005264) #35	ENPP5 (ENSBBBG00000019507) #36	RCAN2 (ENSBBBG00000019534)
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000161543 #7	ENSGT00390000003256 #8	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #16	ENSGT00940000157284 #17	ENSGT00390000001121 #18	ENSGT00940000157084 #20	ENSGT00940000165752 #19	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #26	ENSGT00940000157927 #24	ENSGT00940000159120 #25	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #27	ENSGT00940000158246 #29	ENSGT00390000006786 #30	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36	ENSGT00940000159767
Rambouillet Sheep	MODERN SPECIES	12	TJAP1 (ENSOARG00020021973) #7	LRRC73 (ENSOARG00020022144) #8	YIPF3 (ENSOARG00020022197) #9	POLR1C (ENSOARG00020022290) #10	XPO5 (ENSOARG00020022433) #11	POLH (ENSOARG00020022497) #12	GTPBP2 (ENSOARG00020022529) #13	MAD2L1BP (ENSOARG00020022622) #14	RSPH9 (ENSOARG00020022645) #15	MRPS18A (ENSOARG00020022680) #16	ENSOARG00020022732	VEGFA (ENSOARG00020022857) #17	MRPL14 (ENSOARG00020024309) #18	TMEM63B (ENSOARG00020024328) #20	CAPN11 (ENSOARG00020024352)	MYMX (ENSOARG00020024406) #22	SLC29A1 (ENSOARG00020024417) #23	HSP90AB1 (ENSOARG00020024426) #26	SLC35B2 (ENSOARG00020024444) #24	NFKBIE (ENSOARG00020024469) #25	TMEM151B (ENSOARG00020024483) #28	TCTE1 (ENSOARG00020024516) #27	AARS2 (ENSOARG00020024543) #29	CDC5L (ENSOARG00020024617) #31	SUPT3H (ENSOARG00020024651) #32	RUNX2 (ENSOARG00020024751) #33	CLIC5 (ENSOARG00020011684) #34	ENPP4 (ENSOARG00020012373) #35	ENPP5 (ENSOARG00020012428) #36	RCAN2 (ENSOARG00020012469)	CYP39A1 (ENSOARG00020012671)