Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35	ENSGT00940000159767 #36
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35	ENSGT00940000159767 #36
Bos	ANCESTRAL SPECIES	17	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35	ENSGT00940000159767 #36
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35	ENSGT00940000159767 #36
Hybrid Bos Indicus	MODERN SPECIES	15	DLK2 (ENSBIXG00005007975) #7	TJAP1 (ENSBIXG00005007955) #8	LRRC73 (ENSBIXG00005007915) #9	YIPF3 (ENSBIXG00005007907) #10	POLR1C (ENSBIXG00005007888) #11	XPO5 (ENSBIXG00005000022) #12	POLH (ENSBIXG00005029268) #13	GTPBP2 (ENSBIXG00005029285) #14	MAD2L1BP (ENSBIXG00005029309) #15	RSPH9 (ENSBIXG00005029313) #16	MRPS18A (ENSBIXG00005029321) #17	VEGFA (ENSBIXG00005029350) #18	ENSBIXG00005029198 #19	TMEM63B (ENSBIXG00005029176) #20	ENSBIXG00005001907 #21	MYMX (ENSBIXG00005029092) #22	SLC29A1 (ENSBIXG00005029077) #23	ENSBIXG00005005101 #24	SLC35B2 (ENSBIXG00005028950) #25	TMEM151B (ENSBIXG00005005053) #26	TCTE1 (ENSBIXG00005028882) #27	AARS2 (ENSBIXG00005002270) #28	SPATS1 (ENSBIXG00005005004) #29	CDC5L (ENSBIXG00005028783) #30	SUPT3H (ENSBIXG00005002363) #31	RUNX2 (ENSBIXG00005028546) #32	CLIC5 (ENSBIXG00005004883) #33	ENPP4 (ENSBIXG00005004865) #34	ENPP5 (ENSBIXG00005028257) #35	RCAN2 (ENSBIXG00005028228) #36	ENSBIXG00005028148 #37
Cow	MODERN SPECIES	15	LRRC73 (ENSBTAG00000025554) #9	YIPF3 (ENSBTAG00000018967) #10	POLR1C (ENSBTAG00000018969) #11	XPO5 (ENSBTAG00000018970) #12	POLH (ENSBTAG00000006015) #13	GTPBP2 (ENSBTAG00000006016) #14	MAD2L1BP (ENSBTAG00000009548) #15	RSPH9 (ENSBTAG00000009549) #16	MRPS18A (ENSBTAG00000025571) #17	VEGFA (ENSBTAG00000005339) #18	ENSBTAG00000050249	TMEM63B (ENSBTAG00000032680) #20	CAPN11 (ENSBTAG00000021066)	ENSBTAG00000050117 #21	ENSBTAG00000053551	MYMX (ENSBTAG00000049369) #22	SLC29A1 (ENSBTAG00000015131) #23	HSP90AB1 (ENSBTAG00000000778) #24	SLC35B2 (ENSBTAG00000008076) #25	NFKBIE (ENSBTAG00000013705)	TMEM151B (ENSBTAG00000050799) #26	ENSBTAG00000050049 #27	AARS2 (ENSBTAG00000013722) #28	SPATS1 (ENSBTAG00000053813) #29	CDC5L (ENSBTAG00000020012) #30	SUPT3H (ENSBTAG00000032887) #31	RUNX2 (ENSBTAG00000004104) #32	CLIC5 (ENSBTAG00000010244) #33	ENPP4 (ENSBTAG00000003499) #34	ENPP5 (ENSBTAG00000015829) #35	RCAN2 (ENSBTAG00000009302) #36
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35	ENSGT00940000159767 #36
Domestic yak	MODERN SPECIES	16	TJAP1 (ENSBGRG00000012682) #8	LRRC73 (ENSBGRG00000012584) #9	YIPF3 (ENSBGRG00000012257) #10	POLR1C (ENSBGRG00000011968) #11	XPO5 (ENSBGRG00000011470) #12	POLH (ENSBGRG00000011380) #13	GTPBP2 (ENSBGRG00000011005) #14	MAD2L1BP (ENSBGRG00000010868) #15	RSPH9 (ENSBGRG00000010763) #16	ENSBGRG00000010432 #17	VEGFA (ENSBGRG00000010227) #18	ENSBGRG00000009813 #19	ENSBGRG00000009756 #21	TMEM63B (ENSBGRG00000008917) #20	ENSBGRG00000008841	MYMX (ENSBGRG00000008830) #22	SLC29A1 (ENSBGRG00000007719) #23	SLC35B2 (ENSBGRG00000007502) #25	NFKBIE (ENSBGRG00000007378)	ENSBGRG00000007091 #24	TCTE1 (ENSBGRG00000007036) #27	TMEM151B (ENSBGRG00000006948) #26	AARS2 (ENSBGRG00000025693) #28	SPATS1 (ENSBGRG00000025671) #29	CDC5L (ENSBGRG00000025587) #30	SUPT3H (ENSBGRG00000025521) #31	RUNX2 (ENSBGRG00000025453) #32	CLIC5 (ENSBGRG00000025358) #33	ENPP4 (ENSBGRG00000025340) #34	ENPP5 (ENSBGRG00000025336) #35	ENSBGRG00000025324 #37
Wild yak	MODERN SPECIES	1156	TJAP1 (ENSBMUG00000012199) #8	LRRC73 (ENSBMUG00000012153) #9	YIPF3 (ENSBMUG00000012145) #10	POLR1C (ENSBMUG00000012129) #11	XPO5 (ENSBMUG00000012108) #12	POLH (ENSBMUG00000012084) #13	GTPBP2 (ENSBMUG00000012068) #14	MAD2L1BP (ENSBMUG00000012054) #15	RSPH9 (ENSBMUG00000012049) #16	MRPS18A (ENSBMUG00000012027) #17	ENSBMUG00000011996 #18	MRPL14 (ENSBMUG00000011949) #19	TMEM63B (ENSBMUG00000011927) #20	ENSBMUG00000011908 #21	CAPN11 (ENSBMUG00000011894)	MYMX (ENSBMUG00000011878) #22	SLC29A1 (ENSBMUG00000011739) #23	ENSBMUG00000011676 #24	SLC35B2 (ENSBMUG00000011640) #25	NFKBIE (ENSBMUG00000011601)	TCTE1 (ENSBMUG00000011580) #27	TMEM151B (ENSBMUG00000011556) #26	AARS2 (ENSBMUG00000011497) #28	SPATS1 (ENSBMUG00000011457) #29	CDC5L (ENSBMUG00000011426) #30	SUPT3H (ENSBMUG00000011389) #31	ENSBMUG00000011236 #32	CLIC5 (ENSBMUG00000011072) #33
American bison	MODERN SPECIES	3345	ENSBBBG00000018854	LRRC73 (ENSBBBG00000018869) #9	YIPF3 (ENSBBBG00000004770) #10	POLR1C (ENSBBBG00000018932) #11	XPO5 (ENSBBBG00000018959) #12	POLH (ENSBBBG00000004824) #13	GTPBP2 (ENSBBBG00000004840) #14	MAD2L1BP (ENSBBBG00000004843) #15	RSPH9 (ENSBBBG00000004846) #16	MRPS18A (ENSBBBG00000019022) #17	VEGFA (ENSBBBG00000004895) #18	MRPL14 (ENSBBBG00000019131) #19	TMEM63B (ENSBBBG00000019165) #20	ENSBBBG00000019176 #21	CAPN11 (ENSBBBG00000004944)	MYMX (ENSBBBG00000019201) #22	SLC29A1 (ENSBBBG00000019250) #23	ENSBBBG00000009167 #24	SLC35B2 (ENSBBBG00000005002) #25	NFKBIE (ENSBBBG00000005007)	TMEM151B (ENSBBBG00000019315) #26	TCTE1 (ENSBBBG00000005019) #27	AARS2 (ENSBBBG00000005050) #28	SPATS1 (ENSBBBG00000019339) #29	CDC5L (ENSBBBG00000008519) #30	SUPT3H (ENSBBBG00000019372) #31	RUNX2 (ENSBBBG00000005249) #32	CLIC5 (ENSBBBG00000005260) #33	ENPP4 (ENSBBBG00000005264) #34	ENPP5 (ENSBBBG00000019507) #35	RCAN2 (ENSBBBG00000019534) #36
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672	ENSGT00490000044373 #22	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35	ENSGT00940000159767 #36
Rambouillet Sheep	MODERN SPECIES	12	TJAP1 (ENSOARG00020021973) #8	LRRC73 (ENSOARG00020022144) #9	YIPF3 (ENSOARG00020022197) #10	POLR1C (ENSOARG00020022290) #11	XPO5 (ENSOARG00020022433) #12	POLH (ENSOARG00020022497) #13	GTPBP2 (ENSOARG00020022529) #14	MAD2L1BP (ENSOARG00020022622) #15	RSPH9 (ENSOARG00020022645) #16	MRPS18A (ENSOARG00020022680) #17	ENSOARG00020022732	VEGFA (ENSOARG00020022857) #18	MRPL14 (ENSOARG00020024309) #19	TMEM63B (ENSOARG00020024328) #20	CAPN11 (ENSOARG00020024352)	MYMX (ENSOARG00020024406) #22	SLC29A1 (ENSOARG00020024417) #23	HSP90AB1 (ENSOARG00020024426) #24	SLC35B2 (ENSOARG00020024444) #25	NFKBIE (ENSOARG00020024469)	TMEM151B (ENSOARG00020024483) #26	TCTE1 (ENSOARG00020024516) #27	AARS2 (ENSOARG00020024543) #28	CDC5L (ENSOARG00020024617) #30	SUPT3H (ENSOARG00020024651) #31	RUNX2 (ENSOARG00020024751) #32	CLIC5 (ENSOARG00020011684) #33	ENPP4 (ENSOARG00020012373) #34	ENPP5 (ENSOARG00020012428) #35	RCAN2 (ENSOARG00020012469) #36	CYP39A1 (ENSOARG00020012671)