Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	991																ENSGT00940000166262.b #22	ENSGT00390000009361.d #23	ENSGT00940000165880.b.a #25	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.b #24	ENSGT00940000155447.o.b #27
Cyprininae_a	ANCESTRAL SPECIES	29	ENSGT00390000014679.d.a.b	ENSGT00940000158298.k.a	ENSGT00390000009312.a.d	ENSGT00390000003245.w	ENSGT00940000154641.B.a.c.a	ENSGT00940000155718.a.b #7	ENSGT00940000154629.B.a #8	ENSGT00940000156598.c.b.b #9	ENSGT00390000017845.o #11	ENSGT00940000165706.d #12	ENSGT00940000157715.i.a #13	ENSGT00950000182844.a.b.f #14	ENSGT00390000016613.c.e.a.a #15	ENSGT00940000157118.c.a.e #16	ENSGT01060000248724.a #17	ENSGT00940000166262.b #22	ENSGT00390000009361.d #23	ENSGT00940000165880.b.a #25	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.b #24	ENSGT00940000155447.p ##27	ENSGT00500000044926.e #28	ENSGT00940000157084.e.b.a.a #29	ENSGT00390000010094.b.c #30	ENSGT00940000164505.b #31	ENSGT00950000182898.a.a.a.a.b.h.a #32	ENSGT00940000155683.c #33	ENSGT00950000183154.a.b.f #34	ENSGT00390000016757.u.a #35	ENSGT00390000003178.c.b ##36	ENSGT00940000161693 #37	ENSGT00940000157364.A.b
Common carp reference	MODERN SPECIES	18	khdrbs1a (ENSCCRG00000053702) #7	chp1 (ENSCCRG00000070189) #8	runx3 (ENSCCRG00000062994) #9	ENSCCRG00000059250 #10	syf2 (ENSCCRG00000010944) #11	mgst3b (ENSCCRG00000070955) #12	tmem50a (ENSCCRG00000010925) #13	rhd (ENSCCRG00000010907) #14	maco1b (ENSCCRG00000080563) #15	ldlrap1b (ENSCCRG00000010882) #16	ENSCCRG00000010875 #17	ENSCCRG00000077436 #18	ENSCCRG00000079006 #19	ENSCCRG00000079648 #20	ENSCCRG00000003335 #21	olig4 (ENSCCRG00000044909) #22	bsdc1 (ENSCCRG00000000346) #23	ENSCCRG00000003972 #24	marcksl1a (ENSCCRG00000067483) #25	ENSCCRG00000077297 #26	fgfr2 (ENSCCRG00000031692) #27	ENSCCRG00000005562 #28	ENSCCRG00000005800 #29	ENSCCRG00000005787 #30	ENSCCRG00000005783 #31	slc29a1a (ENSCCRG00000004846) #32	ENSCCRG00000070165 #33	vip (ENSCCRG00000029053) #34	ANAPC1 (ENSCCRG00000074851) #35	bcl2l11 (ENSCCRG00000064559) #36	ACOXL (ENSCCRG00000037098) #37
Golden-line barbel	MODERN SPECIES	69																olig4 (ENSSGRG00000034842) #22	bsdc1 (ENSSGRG00000034773) #23	marcksl1a (ENSSGRG00000034772) #25	fgfr2 (ENSSGRG00000034621) ##27	ENSSGRG00000034581 #28	TMEM63B (ENSSGRG00000034185) #29	ENSSGRG00000034178 #30	ENSSGRG00000034177 #31	slc29a1a (ENSSGRG00000034175) #32	ENSSGRG00000034174 #33	vip (ENSSGRG00000034173) #34	ANAPC1 (ENSSGRG00000033931) #35	bcl2l11 (ENSSGRG00000033929) ##36	ACOXL (ENSSGRG00000033927) #37	lhcgr (ENSSGRG00000033869)	ENSSGRG00000033863
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	503																olig4 (ENSCARG00000062543) #22	bsdc1 (ENSCARG00000062550) #23	marcksl1a (ENSCARG00000062580) #25
Goldfish	MODERN SPECIES	2257	ENSCARG00000039457 #10	ENSCARG00000039466	mgst3b (ENSCARG00000039470) #12	tmem50a (ENSCARG00000039486) #13	rhd (ENSCARG00000039504) #14	maco1b (ENSCARG00000039564) #15	ldlrap1b (ENSCARG00000039648) #16	ENSCARG00000039717 #17	ENSCARG00000039728	ENSCARG00000039748 ##20	ENSCARG00000039784 ##20	ENSCARG00000039824 #17	ENSCARG00000039843	ENSCARG00000039853 #20	FNDC5 (ENSCARG00000039914) #21	olig4 (ENSCARG00000039940) #22	bsdc1 (ENSCARG00000039945) #23
Cyprininae	ANCESTRAL SPECIES	4	ENSGT01100000263505.a	ENSGT00390000003245.x	ENSGT00940000154641.B.a.c.b	ENSGT00940000155718.a.a ##7	ENSGT00940000154629.B.b ##8	ENSGT00940000156598.c.b.a ##9	ENSGT00390000017845.p ##11	ENSGT00940000175194.a ##10	ENSGT00940000165706.c ##12	ENSGT00940000157715.i.b ##13	ENSGT00950000182844.a.b.e ##14	ENSGT00390000016613.c.e.a.b ##15	ENSGT00940000157118.c.a.f ##16	ENSGT01060000248724.b ##17	ENSGT00390000004923.A.c.b #21	ENSGT00940000166262.a ##22	ENSGT00390000009361.c ##23	ENSGT00940000165880.b.b ##25	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.a ##24	ENSGT00940000155447.o.a ##27	ENSGT00500000044926.f ##28	ENSGT00940000157084.e.b.a.b ##29	ENSGT00390000010094.b.d ##30	ENSGT00940000177437	ENSGT00950000182898.a.a.a.a.b.h.b ##32	ENSGT00530000063692.b.j	ENSGT00950000183154.a.b.e ##34	ENSGT00390000016757.u.b ##35	ENSGT00390000003178.c.a.a ##36	ENSGT00940000161693 #37	ENSGT00940000157364.A.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2775																olig4 (ENSCARG00000056739) ##22	bsdc1 (ENSCARG00000056433) ##23
Goldfish	MODERN SPECIES	31	glo1 (ENSCARG00000012536)	zbtb8os (ENSCARG00000012550)	ENSCARG00000012562	khdrbs1a (ENSCARG00000012573) ##7	chp1 (ENSCARG00000012589) ##8	runx3 (ENSCARG00000012622) ##9	ENSCARG00000012745	ENSCARG00000012751	ENSCARG00000012755 ##10	mgst3b (ENSCARG00000012765) ##12	tmem50a (ENSCARG00000012773) ##13	MACO1 (ENSCARG00000012777) ##15	ldlrap1b (ENSCARG00000012796) ##16	ENSCARG00000016888 ##17	FNDC5 (ENSCARG00000016893) #21	olig4 (ENSCARG00000016897) ##22	bsdc1 (ENSCARG00000016907) ##23	marcksl1a (ENSCARG00000016966) #25	ENSCARG00000016981 ##24	ENSCARG00000016984	ENSCARG00000017005	lhcgr (ENSCARG00000017091)	ENSCARG00000017176 ##36	ENSCARG00000017301 ##35	vip (ENSCARG00000018077) ##34	fbxo5 (ENSCARG00000018093)	slc29a1a (ENSCARG00000018115) ##32	ENSCARG00000018254 ##30	TMEM63B (ENSCARG00000018299) ##29	ATE1 (ENSCARG00000018426) ##28	fgfr2 (ENSCARG00000018959) ##27
Cyprininae_a	ANCESTRAL SPECIES	242	ENSGT00390000003245.x	ENSGT00940000154641.B.a.c.b	ENSGT00940000155718.a.a ##7	ENSGT00940000154629.B.b ##8	ENSGT00940000156598.c.b.a ##9	ENSGT00390000017845.p ##11	ENSGT00940000175194.a ##10	ENSGT00940000165706.c ##12	ENSGT00940000157715.i.b ##13	ENSGT00950000182844.a.b.e ##14	ENSGT00390000016613.c.e.a.b ##15	ENSGT00940000157118.c.a.f ##16	ENSGT01060000248724.b ##17	ENSGT00940000155619.j.b.a.a.b ##20	ENSGT00390000004923.A.c.b #21	ENSGT00940000166262.a ##22	ENSGT00390000009361.c ##23	ENSGT00940000165880.b.b ##25	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.a ##24	ENSGT00940000155447.o.a ##27	ENSGT00500000044926.f ##28	ENSGT00940000157084.e.b.a.b ##29	ENSGT00390000010094.b.d ##30	ENSGT00940000177437	ENSGT00950000182898.a.a.a.a.b.h.b ##32	ENSGT00940000155683.d ##33	ENSGT00530000063692.b.j	ENSGT00950000183154.a.b.e ##34	ENSGT00390000016757.u.b ##35	ENSGT00390000003178.c.a.a ##36	ENSGT00940000157364.A.a
Common carp reference	MODERN SPECIES	48	zbtb8os (ENSCCRG00000074760)	ENSCCRG00000033111	khdrbs1a (ENSCCRG00000007262) ##7	chp1 (ENSCCRG00000033145) ##8	runx3 (ENSCCRG00000064485) ##9	ENSCCRG00000059393	syf2 (ENSCCRG00000070331) ##11	ENSCCRG00000074798 ##10	tmem50a (ENSCCRG00000074210) ##13	rhd (ENSCCRG00000041733) ##14	MACO1 (ENSCCRG00000041764) ##15	ldlrap1b (ENSCCRG00000042817) ##16	ENSCCRG00000042864 ##17	ENSCCRG00000082171 ##20	ENSCCRG00000042651 ##21	olig4 (ENSCCRG00000000358) ##22	bsdc1 (ENSCCRG00000000372) ##23	ENSCCRG00000053067 ##24	ENSCCRG00000073093 ##24	fgfr2 (ENSCCRG00000009600) ##27	ENSCCRG00000047389 ##28	ENSCCRG00000047413 ##29	slc29a1a (ENSCCRG00000047472) ##32	ENSCCRG00000047466 ##30	ENSCCRG00000073248 ##26	fbxo5 (ENSCCRG00000026773)	vip (ENSCCRG00000026783) ##34	ENSCCRG00000059986 ##35	bcl2l11 (ENSCCRG00000024680) ##36	ENSCCRG00000048885	ENSCCRG00000048882
Golden-line barbel	MODERN SPECIES	233	ENSSGRG00000015830	ENSSGRG00000015829	khdrbs1a (ENSSGRG00000015827) ##7	chp1 (ENSSGRG00000015711) ##8	runx3 (ENSSGRG00000015702) ##9	syf2 (ENSSGRG00000015694) ##11	ENSSGRG00000015693 ##10	mgst3b (ENSSGRG00000015685) ##12	rhd (ENSSGRG00000015680) ##14	ENSSGRG00000015678 ##15	ENSSGRG00000015677 ##15	ldlrap1b (ENSSGRG00000015676) ##16	ENSSGRG00000015675 ##17	ENSSGRG00000015674 ##20	FNDC5 (ENSSGRG00000015673) #21	olig4 (ENSSGRG00000015672) ##22	bsdc1 (ENSSGRG00000015671) ##23	marcksl1a (ENSSGRG00000015670) ##25	ENSSGRG00000015669	fgfr2 (ENSSGRG00000010598) ##27	ATE1 (ENSSGRG00000010424) ##28	TMEM63B (ENSSGRG00000010070) ##29	ENSSGRG00000010066 ##30	ENSSGRG00000010064	slc29a1a (ENSSGRG00000010063) ##32	ENSSGRG00000010062 ##33	vip (ENSSGRG00000010060) ##34	bcl2l11 (ENSSGRG00000009942) ##36	ACOXL (ENSSGRG00000009935) #37	lhcgr (ENSSGRG00000009867)	ENSSGRG00000009856