Otophysi ANCESTRAL SPECIES 289 ENSGT00390000003245 ENSGT00940000154641.B.a.c #8 ENSGT00940000155718.a #9 ENSGT00940000154629.B #10 ENSGT00940000156598.c.b #11 ENSGT00990000210926 ENSGT00390000017845 #12 ENSGT00730000112145 ENSGT00940000165706 #14 ENSGT00940000157715 ENSGT00950000182844.a.b #15 ENSGT00390000016613.c.e.a #17 ENSGT00940000157118.c.a #18 ENSGT01060000248724 #19 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262 #22 ENSGT00390000009361 #23 ENSGT00940000165880.b #24 ENSGT00940000165614 Cyprinoidei ANCESTRAL SPECIES 26 ENSGT00390000003245 ENSGT00940000154641.B.a.c #8 ENSGT00940000155718.a #9 ENSGT00940000154629.B #10 ENSGT00940000156598.c.b #11 ENSGT00390000017845 #12 ENSGT00940000175194 #13 ENSGT00730000112145 ENSGT00940000165706 #14 ENSGT00940000157715 ENSGT00950000182844.a.b #15 ENSGT00390000016613.c.e.a.a ##16 ENSGT00940000157118.c.a #18 ENSGT01060000248724 #19 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262 #22 ENSGT00390000009361 #23 ENSGT00940000165880.b #24 ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b ENSGT00940000155447 #26 ENSGT00500000044926 #27 ENSGT00940000157084.e.b.a #28 ENSGT00390000010094.b #29 ENSGT00940000164505.b ENSGT00950000182898.a.a.a.a.b.h #31 ENSGT00940000155683 #32 ENSGT00530000063692.b ENSGT00950000183154.a.b #33 ENSGT00390000016757 ENSGT00390000003178.c #34 ENSGT00940000161693 #35 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 4 ENSGT01100000263505.a ENSGT00390000003245.x ENSGT00940000154641.B.a.c.b #8 ENSGT00940000155718.a.a #9 ENSGT00940000154629.B.b #10 ENSGT00940000156598.c.b.a #11 ENSGT00390000017845.p #12 ENSGT00940000175194.a #13 ENSGT00940000165706.c #14 ENSGT00940000157715.i.b ENSGT00950000182844.a.b.e #15 ENSGT00390000016613.c.e.a.b #17 ENSGT00940000157118.c.a.f #18 ENSGT01060000248724.b #19 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262.a #22 ENSGT00390000009361.c #23 ENSGT00940000165880.b.b #24 ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.a ENSGT00940000155447.o.a ##26 ENSGT00500000044926.f #27 ENSGT00940000157084.e.b.a.b #28 ENSGT00390000010094.b.d #29 ENSGT00940000177437 #30 ENSGT00950000182898.a.a.a.a.b.h.b #31 ENSGT00530000063692.b.j ENSGT00950000183154.a.b.e #33 ENSGT00390000016757.u.b ENSGT00390000003178.c.a.a ##34 ENSGT00940000161693 #35 ENSGT00940000157364.A.b ##36 Cyprininae_a ANCESTRAL SPECIES 242 ENSGT00390000003245.x ENSGT00940000154641.B.a.c.b #8 ENSGT00940000155718.a.a #9 ENSGT00940000154629.B.b #10 ENSGT00940000156598.c.b.a #11 ENSGT00390000017845.p #12 ENSGT00940000175194.a #13 ENSGT00940000165706.c #14 ENSGT00940000157715.i.b ENSGT00950000182844.a.b.e #15 ENSGT00390000016613.c.e.a.b #17 ENSGT00940000157118.c.a.f #18 ENSGT01060000248724.b #19 ENSGT00940000155619.j.b.a.a.b #20 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262.a #22 ENSGT00390000009361.c #23 ENSGT00940000165880.b.b #24 ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.a ENSGT00940000155447.o.a ##26 ENSGT00500000044926.f #27 ENSGT00940000157084.e.b.a.b #28 ENSGT00390000010094.b.d #29 ENSGT00940000177437 #30 ENSGT00950000182898.a.a.a.a.b.h.b #31 ENSGT00940000155683.d #32 ENSGT00530000063692.b.j ENSGT00950000183154.a.b.e #33 ENSGT00390000016757.u.b ENSGT00390000003178.c.a.a ##34 ENSGT00940000157364.A.a #36 Golden-line barbel MODERN SPECIES 233 ENSSGRG00000015830 #7 ENSSGRG00000015829 #8 khdrbs1a (ENSSGRG00000015827) #9 chp1 (ENSSGRG00000015711) #10 runx3 (ENSSGRG00000015702) #11 syf2 (ENSSGRG00000015694) #12 ENSSGRG00000015693 #13 mgst3b (ENSSGRG00000015685) #14 rhd (ENSSGRG00000015680) #15 ENSSGRG00000015678 #16 ENSSGRG00000015677 #17 ldlrap1b (ENSSGRG00000015676) #18 ENSSGRG00000015675 #19 ENSSGRG00000015674 #20 FNDC5 (ENSSGRG00000015673) #21 olig4 (ENSSGRG00000015672) #22 bsdc1 (ENSSGRG00000015671) #23 marcksl1a (ENSSGRG00000015670) #24 ENSSGRG00000015669 #25 fgfr2 (ENSSGRG00000010598) #26 ATE1 (ENSSGRG00000010424) #27 TMEM63B (ENSSGRG00000010070) #28 ENSSGRG00000010066 #29 ENSSGRG00000010064 #30 slc29a1a (ENSSGRG00000010063) #31 ENSSGRG00000010062 #32 vip (ENSSGRG00000010060) #33 bcl2l11 (ENSSGRG00000009942) #34 ACOXL (ENSSGRG00000009935) #35 lhcgr (ENSSGRG00000009867) #36 ENSSGRG00000009856 #37 Common carp reference MODERN SPECIES 48 zbtb8os (ENSCCRG00000074760) ENSCCRG00000033111 #8 khdrbs1a (ENSCCRG00000007262) #9 chp1 (ENSCCRG00000033145) #10 runx3 (ENSCCRG00000064485) #11 ENSCCRG00000059393 syf2 (ENSCCRG00000070331) #12 ENSCCRG00000074798 #13 tmem50a (ENSCCRG00000074210) rhd (ENSCCRG00000041733) #15 MACO1 (ENSCCRG00000041764) #17 ldlrap1b (ENSCCRG00000042817) #18 ENSCCRG00000042864 #19 ENSCCRG00000082171 #20 ENSCCRG00000042651 #21 olig4 (ENSCCRG00000000358) #22 bsdc1 (ENSCCRG00000000372) #23 ENSCCRG00000053067 ENSCCRG00000073093 fgfr2 (ENSCCRG00000009600) ##26 ENSCCRG00000047389 #27 ENSCCRG00000047413 #28 slc29a1a (ENSCCRG00000047472) #31 ENSCCRG00000047466 #29 ENSCCRG00000073248 fbxo5 (ENSCCRG00000026773) vip (ENSCCRG00000026783) #33 ENSCCRG00000059986 bcl2l11 (ENSCCRG00000024680) ##34 ENSCCRG00000048885 #37 ENSCCRG00000048882 #36 Goldfish DUPLICATION Goldfish MODERN SPECIES 2775 olig4 (ENSCARG00000056739) #22 bsdc1 (ENSCARG00000056433) #23 Goldfish MODERN SPECIES 31 glo1 (ENSCARG00000012536) zbtb8os (ENSCARG00000012550) ENSCARG00000012562 #8 khdrbs1a (ENSCARG00000012573) #9 chp1 (ENSCARG00000012589) #10 runx3 (ENSCARG00000012622) #11 ENSCARG00000012745 ENSCARG00000012751 ENSCARG00000012755 #13 mgst3b (ENSCARG00000012765) #14 tmem50a (ENSCARG00000012773) MACO1 (ENSCARG00000012777) #17 ldlrap1b (ENSCARG00000012796) #18 ENSCARG00000016888 #19 FNDC5 (ENSCARG00000016893) #21 olig4 (ENSCARG00000016897) #22 bsdc1 (ENSCARG00000016907) #23 marcksl1a (ENSCARG00000016966) ##24 ENSCARG00000016981 ENSCARG00000016984 ENSCARG00000017005 #37 lhcgr (ENSCARG00000017091) #36 ENSCARG00000017176 ##34 ENSCARG00000017301 vip (ENSCARG00000018077) #33 fbxo5 (ENSCARG00000018093) slc29a1a (ENSCARG00000018115) #31 ENSCARG00000018254 #29 TMEM63B (ENSCARG00000018299) #28 ATE1 (ENSCARG00000018426) #27 fgfr2 (ENSCARG00000018959) ##26 Cyprininae ANCESTRAL SPECIES 991 ENSGT00940000166262.b ##22 ENSGT00390000009361.d ##23 ENSGT00940000165880.b.a ##24 ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.b ENSGT00940000155447.o.b ##26 Goldfish DUPLICATION Goldfish MODERN SPECIES 503 olig4 (ENSCARG00000062543) ##22 bsdc1 (ENSCARG00000062550) ##23 marcksl1a (ENSCARG00000062580) ##24 Goldfish MODERN SPECIES 2257 ENSCARG00000039457 ##13 ENSCARG00000039466 mgst3b (ENSCARG00000039470) ##14 tmem50a (ENSCARG00000039486) rhd (ENSCARG00000039504) ##15 maco1b (ENSCARG00000039564) ##16 ldlrap1b (ENSCARG00000039648) ##18 ENSCARG00000039717 ##19 ENSCARG00000039728 ENSCARG00000039748 ##20 ENSCARG00000039784 ##20 ENSCARG00000039824 ##19 ENSCARG00000039843 ENSCARG00000039853 ##20 FNDC5 (ENSCARG00000039914) #21 olig4 (ENSCARG00000039940) ##22 bsdc1 (ENSCARG00000039945) ##23 Cyprininae_a ANCESTRAL SPECIES 29 ENSGT00390000014679.d.a.b ENSGT00940000158298.k.a ENSGT00390000009312.a.d ENSGT00390000003245.w ENSGT00940000154641.B.a.c.a ##8 ENSGT00940000155718.a.b ##9 ENSGT00940000154629.B.a ##10 ENSGT00940000156598.c.b.b ##11 ENSGT00390000017845.o ##12 ENSGT00940000165706.d ##14 ENSGT00940000157715.i.a ENSGT00950000182844.a.b.f ##15 ENSGT00390000016613.c.e.a.a ##16 ENSGT00940000157118.c.a.e ##18 ENSGT01060000248724.a ##19 ENSGT00940000166262.b ##22 ENSGT00390000009361.d ##23 ENSGT00940000165880.b.a ##24 ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.b.b ENSGT00940000155447.p #26 ENSGT00500000044926.e ##27 ENSGT00940000157084.e.b.a.a ##28 ENSGT00390000010094.b.c ##29 ENSGT00940000164505.b ENSGT00950000182898.a.a.a.a.b.h.a ##31 ENSGT00940000155683.c ##32 ENSGT00950000183154.a.b.f ##33 ENSGT00390000016757.u.a ENSGT00390000003178.c.b #34 ENSGT00940000161693 #35 ENSGT00940000157364.A.b ##36 Common carp reference MODERN SPECIES 18 khdrbs1a (ENSCCRG00000053702) ##9 chp1 (ENSCCRG00000070189) ##10 runx3 (ENSCCRG00000062994) ##11 ENSCCRG00000059250 ##13 syf2 (ENSCCRG00000010944) ##12 mgst3b (ENSCCRG00000070955) ##14 tmem50a (ENSCCRG00000010925) rhd (ENSCCRG00000010907) ##15 maco1b (ENSCCRG00000080563) ##16 ldlrap1b (ENSCCRG00000010882) ##18 ENSCCRG00000010875 ##19 ENSCCRG00000077436 ##20 ENSCCRG00000079006 ENSCCRG00000079648 ##20 ENSCCRG00000003335 #21 olig4 (ENSCCRG00000044909) ##22 bsdc1 (ENSCCRG00000000346) ##23 ENSCCRG00000003972 marcksl1a (ENSCCRG00000067483) ##24 ENSCCRG00000077297 fgfr2 (ENSCCRG00000031692) ##26 ENSCCRG00000005562 ##27 ENSCCRG00000005800 ##28 ENSCCRG00000005787 ##29 ENSCCRG00000005783 slc29a1a (ENSCCRG00000004846) ##31 ENSCCRG00000070165 ##32 vip (ENSCCRG00000029053) ##33 ANAPC1 (ENSCCRG00000074851) bcl2l11 (ENSCCRG00000064559) ##34 ACOXL (ENSCCRG00000037098) #35 Golden-line barbel MODERN SPECIES 69 olig4 (ENSSGRG00000034842) ##22 bsdc1 (ENSSGRG00000034773) ##23 marcksl1a (ENSSGRG00000034772) ##24 fgfr2 (ENSSGRG00000034621) ##26 ENSSGRG00000034581 ##27 TMEM63B (ENSSGRG00000034185) ##28 ENSSGRG00000034178 ##29 ENSSGRG00000034177 slc29a1a (ENSSGRG00000034175) ##31 ENSSGRG00000034174 ##32 vip (ENSSGRG00000034173) ##33 ANAPC1 (ENSSGRG00000033931) bcl2l11 (ENSSGRG00000033929) ##34 ACOXL (ENSSGRG00000033927) ##35 lhcgr (ENSSGRG00000033869) ##36 ENSSGRG00000033863 ##37 Zebrafish MODERN SPECIES 4 ENSDARG00000074235 #8 khdrbs1a (ENSDARG00000052856) #9 chp1 (ENSDARG00000052859) #10 runx3 (ENSDARG00000052826) #11 znfl1g (ENSDARG00000079524) syf2 (ENSDARG00000004706) #12 rsrp1 (ENSDARG00000030440) mgst3b (ENSDARG00000033364) #14 tmem50a (ENSDARG00000015757) rhd (ENSDARG00000002194) #15 maco1b (ENSDARG00000012741) ##16 ldlrap1b (ENSDARG00000039750) #18 ENSDARG00000112419 #20 FNDC5 (ENSDARG00000069739) #21 ENSDARG00000098440 olig4 (ENSDARG00000052610) #22 bsdc1 (ENSDARG00000052623) #23 marcksl1a (ENSDARG00000039034) #24 ENSDARG00000076019 ENSDARG00000052646 fgfr2 (ENSDARG00000058115) #26 ATE1 (ENSDARG00000103813) #27 TMEM63B (ENSDARG00000104559) #28 ENSDARG00000098286 #29 slc29a1a (ENSDARG00000101289) #31 MTRF1L (ENSDARG00000060005) #32 fbxo5 (ENSDARG00000039020) vip (ENSDARG00000078247) #33 ANAPC1 (ENSDARG00000075687) bcl2l11 (ENSDARG00000079144) #34 ACOXL (ENSDARG00000020149) #35 Characiphysae ANCESTRAL SPECIES 31 ENSGT00610000086460 ENSGT00940000156754.a.b.a.c ENSGT01070000253822.A.j.a ENSGT01030000234938.A ENSGT00940000164360.A.b ENSGT00940000159732.b ENSGT00390000009189 ENSGT00950000182836.a ENSGT00940000159967.c ENSGT00980000203171 ENSGT00940000163168 ENSGT00940000155619.j.b #20 ENSGT00940000173891 ENSGT00940000165273 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262 #22 ENSGT00390000009361 #23 ENSGT00940000165880.b #24 ENSGT00940000165614 ENSGT01100000263836 ENSGT00390000018691.c ENSGT00940000159673 ENSGT00940000158836.a.a ENSGT00390000006996 ENSGT01030000234620.a.b.a.l ENSGT00940000156540.a ENSGT00730000111179.b ENSGT00940000154656.pb.b.b ENSGT00940000176966 ENSGT00940000154656.ob.a.r ENSGT00940000156116.A Channel catfish MODERN SPECIES 22 ENSIPUG00000021775 ENSIPUG00000021799 ENSIPUG00000021803 SH2D4B (ENSIPUG00000021808) ENSIPUG00000021821 LBH (ENSIPUG00000021823) lclat1 (ENSIPUG00000021831) slc30a10 (ENSIPUG00000021851) ENSIPUG00000021853 ENSIPUG00000021854 ENSIPUG00000021861 #20 ENSIPUG00000021881 fndc5 (ENSIPUG00000021889) #21 ENSIPUG00000021912 ENSIPUG00000021920 olig4 (ENSIPUG00000021928) #22 bsdc1 (ENSIPUG00000021936) #23 marcksl1 (ENSIPUG00000021961) #24 ENSIPUG00000021963 ENSIPUG00000021970 isg12 (ENSIPUG00000021985) snapc1 (ENSIPUG00000021993) syt16 (ENSIPUG00000022003) SGPP1 (ENSIPUG00000022014) wdr89 (ENSIPUG00000022021) ppp2r5eb (ENSIPUG00000022027) KCNH5 (ENSIPUG00000022063) gphb5 (ENSIPUG00000022076) ENSIPUG00000022082 ENSIPUG00000022097 ENSIPUG00000023196 Characiphysae_b ANCESTRAL SPECIES 67 ENSGT01070000253822.A.j.a ENSGT01030000234938.A ENSGT00940000164360.A.b ENSGT00940000159732.b ENSGT00940000153120.b ENSGT00940000153120.a ENSGT00390000009189 ENSGT00950000182836.a ENSGT00940000159967.c ENSGT00980000203171 ENSGT00940000163168 ENSGT00940000155619.j.b #20 ENSGT00940000173891 ENSGT00940000165273 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262 #22 ENSGT00390000009361 #23 ENSGT00940000165880.b #24 ENSGT00940000165614 ENSGT00390000018691.c ENSGT00940000159673 ENSGT00940000158836.a.a ENSGT00390000006996 ENSGT01030000234620.a.b.a.l ENSGT00940000156540.a ENSGT00730000111179.b ENSGT00940000176966 ENSGT00940000154656.ob.a.r ENSGT00940000156116.A Characoidei ANCESTRAL SPECIES 49 ENSGT00940000159732.b ENSGT00950000183576.e ENSGT00940000153120.b ENSGT00940000153120.a ENSGT00390000009189 ENSGT00950000182836.a ENSGT00940000159967.c ENSGT00980000203171 ENSGT00940000163168 ENSGT00940000155619.j.b #20 ENSGT01030000235403 ENSGT00940000171532 ENSGT00390000004923.A.c.b #21 ENSGT00940000166262 #22 ENSGT00390000009361 #23 ENSGT00940000165880.b #24 ENSGT00940000155018 ENSGT01100000263688 ENSGT00390000018691.c ENSGT00940000159673 ENSGT00940000158836.a.a ENSGT00390000006996 ENSGT01030000234620.a.b.a.l ENSGT00940000156540.a ENSGT00730000111179.b ENSGT00940000176966 ENSGT00940000154656.ob.a.r ENSGT00940000156116.A ENSGT00940000164854.b.e Mexicana tetra MODERN SPECIES 17 ENSAMXG00000031089 ENSAMXG00000035987 ENSAMXG00000034385 SH2D4B (ENSAMXG00000008731) ENSAMXG00000008725 ENSAMXG00000032626 ENSAMXG00000031083 lbh (ENSAMXG00000029299) lclat1 (ENSAMXG00000041145) slc30a10 (ENSAMXG00000008714) ENSAMXG00000037319 ypel5 (ENSAMXG00000032716) ENSAMXG00000008669 #20 ENSAMXG00000036709 FNDC5 (ENSAMXG00000008645) #21 olig4 (ENSAMXG00000008630) #22 ENSAMXG00000036138 MDGA1 (ENSAMXG00000003278) ENSAMXG00000038512 zfyve21 (ENSAMXG00000033590) fhip2a (ENSAMXG00000003213) ablim1a (ENSAMXG00000003164) dact2 (ENSAMXG00000003133) eif3s6ip (ENSAMXG00000003073) SMOC2 (ENSAMXG00000043024) vsir (ENSAMXG00000036342) ENSAMXG00000033271 cdh23 (ENSAMXG00000002906) bsdc1 (ENSAMXG00000039675) #23 ENSAMXG00000039507 marcksl1a (ENSAMXG00000029036) #24 Red-bellied piranha MODERN SPECIES 405 SH2D4B (ENSPNAG00000001605) ENSPNAG00000001607 ENSPNAG00000001614 lbh (ENSPNAG00000011231) lclat1 (ENSPNAG00000001633) slc30a10 (ENSPNAG00000001641) ENSPNAG00000011280 ypel5 (ENSPNAG00000001651) ENSPNAG00000011297 ENSPNAG00000001665 #20 ENSPNAG00000001668 ENSPNAG00000011348 FNDC5 (ENSPNAG00000001698) #21 ENSPNAG00000007030 olig4 (ENSPNAG00000011429) #22 bsdc1 (ENSPNAG00000001737) #23 marcksl1a (ENSPNAG00000001740) #24 ENSPNAG00000001779 ENSPNAG00000011554 ENSPNAG00000011575 Electric eel MODERN SPECIES 105 glo1 (ENSEEEG00000011516) zfand3 (ENSEEEG00000011520) MDGA1 (ENSEEEG00000011526) ENSEEEG00000011529 ENSEEEG00000011545 ENSEEEG00000011686 ENSEEEG00000011688 lbh (ENSEEEG00000011689) lclat1 (ENSEEEG00000011691) slc30a10 (ENSEEEG00000011694) ENSEEEG00000011696 ypel5 (ENSEEEG00000011698) ENSEEEG00000011710 #20 ENSEEEG00000011739 FNDC5 (ENSEEEG00000011774) #21 olig4 (ENSEEEG00000011776) #22 bsdc1 (ENSEEEG00000011777) #23 marcksl1a (ENSEEEG00000011780) #24 ENSEEEG00000011781 ifi27.8 (ENSEEEG00000011783) snapc1b (ENSEEEG00000011791) SYT16 (ENSEEEG00000011792) SGPP1 (ENSEEEG00000011794) wdr89 (ENSEEEG00000011795) ppp2r5eb (ENSEEEG00000011842) KCNH5 (ENSEEEG00000012754) gphb5 (ENSEEEG00000012755) ENSEEEG00000012762 ENSEEEG00000012766 esr2b (ENSEEEG00000012770) ENSEEEG00000012777