Euteleostomi ANCESTRAL SPECIES ENSGT00940000163405 #22 Sarcopterygii ANCESTRAL SPECIES ENSGT00940000163405 #22 Tetrapoda ANCESTRAL SPECIES ENSGT00940000163405 #22 Amniota ANCESTRAL SPECIES ENSGT00940000163405 #22 Mammalia ANCESTRAL SPECIES ENSGT00940000163405 #22 Theria ANCESTRAL SPECIES ENSGT00940000163405 #22 Eutheria ANCESTRAL SPECIES ENSGT00940000163405 #22 Boreoeutheria ANCESTRAL SPECIES ENSGT00940000163405 #22 Laurasiatheria ANCESTRAL SPECIES ENSGT00940000163405 #22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000163405 #22 Artiodactyla ANCESTRAL SPECIES ENSGT00940000163405 #22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000163405 #22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000163405 #22 Pecora ANCESTRAL SPECIES ENSGT00940000163405 #22 Percora_a ANCESTRAL SPECIES ENSGT00940000163405 #22 Bovidae DUPLICATION Bovidae ANCESTRAL SPECIES 23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a ENSGT01030000235420.b ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #37 ENSGT00940000162022 #35 ENSGT00440000033720.a #34 ENSGT00940000153421.a.a.a.a.b #33 ENSGT00390000016722 ENSGT00940000155212 ENSGT00940000163405.h #22 ENSGT00390000005717 #23 ENSGT00410000025556.a.b #25 ENSGT00940000158265 #26 ENSGT00940000155821 #27 ENSGT00390000004175 #21 ENSGT00940000153904.a #20 ENSGT00390000009151.i #19 ENSGT00950000182965.b #18 ENSGT00950000183035.a.b.a #17 ENSGT00950000182803.B.d.b #16 ENSGT00940000159771 ENSGT00940000160879 #15 ENSGT00940000154433.a.a #14 ENSGT00940000159095.c.b #13 ENSGT00930000150973.A #11 Caprinae ANCESTRAL SPECIES 67 ENSGT00940000163405.h #22 ENSGT00390000005717 #23 ENSGT00410000025556.a.b #25 ENSGT00940000158265 #26 ENSGT00940000155821 #27 ENSGT00390000003197.i.b ENSGT00940000157944.p #28 Rambouillet Sheep MODERN SPECIES 205 TRAPPC2B (ENSOARG00020006549) #7 RAB9A (ENSOARG00020006500) #8 ENSOARG00020006470 #9 ENSOARG00020006452 #10 ENSOARG00020025090 #11 ENSOARG00020025076 #12 ENSOARG00020025057 #13 ThymB4X (ENSOARG00020025015) #14 TLR8 (ENSOARG00020025004) #15 PRPS2 (ENSOARG00020024982) #16 FRMPD4 (ENSOARG00020024665) #17 ENSOARG00020024285 #18 AMELX (ENSOARG00020024156) #19 ARHGAP6 (ENSOARG00020024127) #20 HCCS (ENSOARG00020024113) #21 PRDM9 (ENSOARG00020023893) #22 ENSOARG00020023859 #23 ENSOARG00020023846 #24 WWC3 (ENSOARG00020023612) #25 CLCN4 (ENSOARG00020023510) #26 MID1 (ENSOARG00020023438) #27 ENSOARG00020023199 #28 ENSOARG00020023171 #29 ENSOARG00020023143 #30 ENSOARG00020023132 #31 ENSOARG00020023111 #32 ENSOARG00020023008 #33 ANOS1 (ENSOARG00020022822) #34 PNPLA4 (ENSOARG00020022744) #35 ENSOARG00020022730 #36 STS (ENSOARG00020022693) #37 Goat DUPLICATION Goat DUPLICATION Goat MODERN SPECIES 27 ENSCHIG00000009132 #22 FAM110C (ENSCHIG00000026574) SH3YL1 (ENSCHIG00000023106) ENSCHIG00000025424 ALKAL2 (ENSCHIG00000020263) TMEM18 (ENSCHIG00000027148) SNTG2 (ENSCHIG00000016102) TPO (ENSCHIG00000021384) PXDN (ENSCHIG00000016100) MYT1L (ENSCHIG00000015993) EIPR1 (ENSCHIG00000020574) TRAPPC12 (ENSCHIG00000019261) ADI1 (ENSCHIG00000016728) ENSCHIG00000022264 RPS7 (ENSCHIG00000026929) COLEC11 (ENSCHIG00000015672) Goat MODERN SPECIES ENSCHIG00000026346 #22 ZNF596 (ENSCHIG00000023889) SGO1 (ENSCHIG00000013739) KAT2B (ENSCHIG00000022776) PP2D1 (ENSCHIG00000017933) RAB5A (ENSCHIG00000025419) EFHB (ENSCHIG00000013082) KCNH8 (ENSCHIG00000018810) SATB1 (ENSCHIG00000023143) TBC1D5 (ENSCHIG00000022282) PLCL2 (ENSCHIG00000010205) DAZL (ENSCHIG00000017877) RFTN1 (ENSCHIG00000013091) OXNAD1 (ENSCHIG00000027046) DPH3 (ENSCHIG00000016516) GALNT15 (ENSCHIG00000012848) Goat MODERN SPECIES 29 ENSCHIG00000020767 GRPR (ENSCHIG00000011617) ENSCHIG00000021293 PHKA2 (ENSCHIG00000010821) TXLNG (ENSCHIG00000012205) SYAP1 (ENSCHIG00000021143) S100G (ENSCHIG00000016758) CTPS2 (ENSCHIG00000003270) REPS2 (ENSCHIG00000011491) NHS (ENSCHIG00000015038) ENSCHIG00000007744 ENSCHIG00000001926 ENSCHIG00000008666 ENSCHIG00000008394 ENSCHIG00000019919 ENSCHIG00000014610 #22 ENSCHIG00000023671 CDKL5 (ENSCHIG00000010574) RS1 (ENSCHIG00000022783) PPEF1 (ENSCHIG00000017281) ENSCHIG00000012595 ADGRG2 (ENSCHIG00000012482) ENSCHIG00000016862 ENSCHIG00000019669 PRPS2 (ENSCHIG00000006680) #16 TLR7 (ENSCHIG00000021012) TLR8 (ENSCHIG00000016625) #15 ENSCHIG00000002946 BCLAF3 (ENSCHIG00000025713) MAP7D2 (ENSCHIG00000007458) ENSCHIG00000021471 Bovinae ANCESTRAL SPECIES 104 ENSGT00940000163405.h #22 ENSGT00390000005717 #23 ENSGT00980000198921 Bos ANCESTRAL SPECIES 112 ENSGT00940000163405.h #22 ENSGT00390000005717 #23 ENSGT00980000198921.a.b Bos_b DUPLICATION Bos_b ANCESTRAL SPECIES 60 ENSGT00940000163405.h.a #22 ENSGT00390000005717 #23 ENSGT00980000198921.a.b ENSGT00940000161625.e.b.b.a Hybrid Bos Indicus MODERN SPECIES 165 ENSBIXG00005022501 ENSBIXG00005022576 #22 ENSBIXG00005022593 #23 ENSBIXG00005003857 ENSBIXG00005003862 Cow MODERN SPECIES 177 TRAPPC2 (ENSBTAG00000010922) #7 RAB9A (ENSBTAG00000010923) #8 TCEANC (ENSBTAG00000017945) #9 EGFL6 (ENSBTAG00000017927) #11 ENSBTAG00000021684 #9 TMSB4X (ENSBTAG00000038488) #14 TLR7 (ENSBTAG00000022161) PRPS2 (ENSBTAG00000047997) ##16 FRMPD4 (ENSBTAG00000017785) #17 MSL3 (ENSBTAG00000009278) #18 MID1 (ENSBTAG00000010152) #27 CLCN4 (ENSBTAG00000011121) #26 WWC3 (ENSBTAG00000013824) #25 ENSBTAG00000048594 ENSBTAG00000035122 ENSBTAG00000009932 #22 ENSBTAG00000055193 CLDN34 (ENSBTAG00000046366) #23 ENSBTAG00000053828 ENSBTAG00000047068 ENSBTAG00000002158 #22 SHROOM2 (ENSBTAG00000000211) ENSBTAG00000051024 GPR143 (ENSBTAG00000006472) TBL1X (ENSBTAG00000018112) #33 ANOS1 (ENSBTAG00000001049) #34 PNPLA4 (ENSBTAG00000015849) #35 STS (ENSBTAG00000020789) #37 PUDP (ENSBTAG00000000207) ENSBTAG00000027841 MGC151921 (ENSBTAG00000046084) Bos_b ANCESTRAL SPECIES ENSGT00940000163405.h.b #22 Cow MODERN SPECIES 177 TMSB4X (ENSBTAG00000038488) #14 TLR7 (ENSBTAG00000022161) PRPS2 (ENSBTAG00000047997) ##16 FRMPD4 (ENSBTAG00000017785) #17 MSL3 (ENSBTAG00000009278) #18 MID1 (ENSBTAG00000010152) #27 CLCN4 (ENSBTAG00000011121) #26 WWC3 (ENSBTAG00000013824) #25 ENSBTAG00000048594 ENSBTAG00000035122 ENSBTAG00000009932 #22 ENSBTAG00000055193 CLDN34 (ENSBTAG00000046366) #23 ENSBTAG00000053828 ENSBTAG00000047068 ENSBTAG00000002158 #22 SHROOM2 (ENSBTAG00000000211) ENSBTAG00000051024 GPR143 (ENSBTAG00000006472) TBL1X (ENSBTAG00000018112) #33 ANOS1 (ENSBTAG00000001049) #34 PNPLA4 (ENSBTAG00000015849) #35 STS (ENSBTAG00000020789) #37 PUDP (ENSBTAG00000000207) ENSBTAG00000027841 MGC151921 (ENSBTAG00000046084) BDA20 (ENSBTAG00000016820) ENSBTAG00000012491 ENSBTAG00000053270 ENSBTAG00000049442 ENSBTAG00000052075 Bovidae ANCESTRAL SPECIES ENSGT00940000163405.g ##22 Caprinae ANCESTRAL SPECIES ENSGT00940000163405.g ##22 Goat MODERN SPECIES 13 IREB2 (ENSCHIG00000023111) CRABP1 (ENSCHIG00000019166) ENSCHIG00000026894 DNAJA4 (ENSCHIG00000024271) ACSBG1 (ENSCHIG00000011482) IDH3A (ENSCHIG00000014252) CIB2 (ENSCHIG00000023624) SH2D7 (ENSCHIG00000014046) TBC1D2B (ENSCHIG00000016175) ADAMTS7 (ENSCHIG00000009784) OTUD7A (ENSCHIG00000016906) ENSCHIG00000016255 ENSCHIG00000023680 ENSCHIG00000009012 CHRNA7 (ENSCHIG00000009600) ENSCHIG00000019516 ##22 SNRPA1 (ENSCHIG00000016313) PCSK6 (ENSCHIG00000016761) TM2D3 (ENSCHIG00000016740) TARS3 (ENSCHIG00000015264) TJP1 (ENSCHIG00000017162) ENTREP2 (ENSCHIG00000022699) APBA2 (ENSCHIG00000020156) ENSCHIG00000015732 KLF13 (ENSCHIG00000007281) TRPM1 (ENSCHIG00000008973) MTMR10 (ENSCHIG00000020354) FAN1 (ENSCHIG00000021105) MPHOSPH10 (ENSCHIG00000023646) MCEE (ENSCHIG00000020324) TMC3 (ENSCHIG00000021444) Yarkand deer MODERN SPECIES 27 ENSCHYG00000005808 #22 ENSCHYG00000005780 ENSCHYG00000005770 MZF1 (ENSCHYG00000005723) ENSCHYG00000005669 CHMP2A (ENSCHYG00000005643) TRIM28 (ENSCHYG00000005519) ZBTB45 (ENSCHYG00000005484) SLC27A5 (ENSCHYG00000005440) ZNF446 (ENSCHYG00000005353) ENSCHYG00000005310 ENSCHYG00000005286 ZNF132 (ENSCHYG00000005266) ENSCHYG00000005253 A1BG (ENSCHYG00000005219) ENSCHYG00000005134 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000163405 #22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00940000163405 #22 Chiroptera ANCESTRAL SPECIES ENSGT00940000163405 #22 Microchiroptera ANCESTRAL SPECIES ENSGT00940000163405 #22 Greater horseshoe bat MODERN SPECIES 3 ENSRFEG00010021651 ENSRFEG00010021643 #22 CACNA1B (ENSRFEG00010011470) EHMT1 (ENSRFEG00010009603) ARRDC1 (ENSRFEG00010009523) ZMYND19 (ENSRFEG00010009476) ENSRFEG00010009404 ENSRFEG00010009385 MRPL41 (ENSRFEG00010009365) PNPLA7 (ENSRFEG00010008847) NSMF (ENSRFEG00010008640) ENTPD8 (ENSRFEG00010008561) NOXA1 (ENSRFEG00010008476) NRARP (ENSRFEG00010008440) TOR4A (ENSRFEG00010008424) NELFB (ENSRFEG00010008299) STPG3 (ENSRFEG00010008233) Carnivora ANCESTRAL SPECIES ENSGT00940000163405 #22 Caniformia ANCESTRAL SPECIES ENSGT00940000163405 #22 Caniformia_b ANCESTRAL SPECIES ENSGT00940000163405 #22 Mustelinae ANCESTRAL SPECIES 6 ENSGT00940000163405 #22 ENSGT00940000153229.A.a.a ENSGT00390000009477 ENSGT00390000018903 ENSGT00940000159182 ENSGT00940000159115 ENSGT01030000234510.b ENSGT00390000005563 ENSGT00390000003058.b.a.b ENSGT00390000007852 ENSGT00940000158841 ENSGT00390000015057 ENSGT00530000063956.b.a ENSGT00940000158102 ENSGT00950000182832.D.a ENSGT00940000159615 American mink MODERN SPECIES 98 ENSNVIG00000011473 #22 ENSNVIG00000011467 GAS8 (ENSNVIG00000011441) DEF8 (ENSNVIG00000011406) TUBB3 (ENSNVIG00000011400) MC1R (ENSNVIG00000011389) TCF25 (ENSNVIG00000011116) SPIRE2 (ENSNVIG00000011101) FANCA (ENSNVIG00000010872) ZNF276 (ENSNVIG00000010837) VPS9D1 (ENSNVIG00000010585) SPATA2L (ENSNVIG00000010577) CDK10 (ENSNVIG00000010537) ENSNVIG00000010534 ENSNVIG00000010517 DPEP1 (ENSNVIG00000010498) Euarchontoglires ANCESTRAL SPECIES ENSGT00940000163405 #22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000163405 #22 Tree shrew DUPLICATION Tree shrew MODERN SPECIES 3212 ENSTBEG00000001699 #22 Tree shrew MODERN SPECIES 5459 ENSTBEG00000017310 #22 ENSTBEG00000016902 ENSTBEG00000016800 Glires ANCESTRAL SPECIES ENSGT00940000163405 #22 Rodentia ANCESTRAL SPECIES ENSGT00940000163405 #22 Rodentia_A ANCESTRAL SPECIES ENSGT00940000163405 #22 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000163405 #22 Naked mole-rat female MODERN SPECIES 31 ARHGAP6 (ENSHGLG00000001753) #20 AMELX (ENSHGLG00000009327) #19 MSL3 (ENSHGLG00000000202) #18 FRMPD4 (ENSHGLG00000001133) #17 ENSHGLG00000039291 ENSHGLG00000005664 PRPS2 (ENSHGLG00000001149) #16 ENSHGLG00000000777 ENSHGLG00000039759 ENSHGLG00000037448 ENSHGLG00000032080 ENSHGLG00000047819 ENSHGLG00000046562 ENSHGLG00000038472 ENSHGLG00000049109 ENSHGLG00000041453 #22 ENSHGLG00000040468 ENSHGLG00000032885 ENSHGLG00000047934 SHOX (ENSHGLG00000000231) ENSHGLG00000032025 ENSHGLG00000043703 ENSHGLG00000035502 ENSHGLG00000036691 ASMTL (ENSHGLG00000000257) P2RY8 (ENSHGLG00000046211) ENSHGLG00000048736 ENSHGLG00000000343 ASMT (ENSHGLG00000000347) DHRSX (ENSHGLG00000044121) ZBED1 (ENSHGLG00000035208) Sciuridae ANCESTRAL SPECIES ENSGT00940000163405 #22 Eurasian red squirrel MODERN SPECIES 12 PRDM9 (ENSSVLG00005012896) #22 ENSSVLG00005012795 PDCD1 (ENSSVLG00005012721) NEU4 (ENSSVLG00005012671) GAL3ST2 (ENSSVLG00005012622) D2HGDH (ENSSVLG00005012513) ING5 (ENSSVLG00005012450) DTYMK (ENSSVLG00005012417) ATG4B (ENSSVLG00005012261) ENSSVLG00005012212 THAP4 (ENSSVLG00005012097) BOK (ENSSVLG00005012052) STK25 (ENSSVLG00005011880) FARP2 (ENSSVLG00005011791) ENSSVLG00005011546 HDLBP (ENSSVLG00005011227) Primates ANCESTRAL SPECIES ENSGT00940000163405 #22 Haplorrhini ANCESTRAL SPECIES ENSGT00940000163405 #22 Simiiformes ANCESTRAL SPECIES ENSGT00940000163405 #22 Catarrhini ANCESTRAL SPECIES ENSGT00940000163405 #22 Hominoidea ANCESTRAL SPECIES ENSGT00940000163405 #22 Hominidae ANCESTRAL SPECIES ENSGT00940000163405 #22 Homo/Pan/Gorilla group ANCESTRAL SPECIES 7 ENSGT00390000009802.a ENSGT00390000009802.b ENSGT00860000135740 ENSGT00390000012189 ENSGT00940000158009 ENSGT00940000160025 ENSGT00390000018047 ENSGT00940000160746 ENSGT00940000155469 ENSGT00730000111450 ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b.b ENSGT00390000013228.e.b.i.a.a.a ENSGT01100000263504.b.o ENSGT00940000157512 ENSGT00940000154187.a.b ENSGT00940000163405 #22 ENSGT00940000154187.a.a ENSGT00940000160496.b ENSGT00940000154673.a ENSGT00730000111052 ENSGT00390000001801 ENSGT00910000146963 ENSGT00940000157749 ENSGT00390000007153.a.a ENSGT00390000010721.a.a.a.a.c.a.d ENSGT00940000160263 ENSGT00940000155290.C ENSGT00390000009310.j.b ENSGT00390000008802.m.a ENSGT00440000033872 ENSGT00940000154969.b Gorilla MODERN SPECIES 8 ANKH (ENSGGOG00000015324) ENSGGOG00000041512 FBXL7 (ENSGGOG00000011159) ENSGGOG00000015876 ZNF622 (ENSGGOG00000009831) RETREG1 (ENSGGOG00000010613) MYO10 (ENSGGOG00000007641) BASP1 (ENSGGOG00000040563) ENSGGOG00000024641 ENSGGOG00000037119 ENSGGOG00000024293 MPP2 (ENSGGOG00000041392) CDH18 (ENSGGOG00000010981) CDH12 (ENSGGOG00000016817) ENSGGOG00000038517 PRDM9 (ENSGGOG00000024584) #22 ENSGGOG00000040189 CDH10 (ENSGGOG00000012457) ENSGGOG00000041862 CDH9 (ENSGGOG00000012370) ENSGGOG00000002681 CDH6 (ENSGGOG00000016956) ENSGGOG00000004617 DROSHA (ENSGGOG00000011006) C5orf22 (ENSGGOG00000011027) ENSGGOG00000042873 PDZD2 (ENSGGOG00000022358) GOLPH3 (ENSGGOG00000027544) ENSGGOG00000043735 MTMR12 (ENSGGOG00000009387) ZFR (ENSGGOG00000016302) Homo/Pan group ANCESTRAL SPECIES 8 ENSGT00940000154766.a.a ENSGT00390000009802.a ENSGT00390000009802.b ENSGT00390000012189 ENSGT00940000158009 ENSGT00940000160025 ENSGT00390000018047 ENSGT00940000160746 ENSGT00940000155469 ENSGT00730000111450 ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b.b ENSGT00390000013228.e.b.i.a.a.a ENSGT01100000263504.b.o ENSGT00940000157512 ENSGT00940000154187.a.b ENSGT00940000163405 #22 ENSGT00940000154187.a.a ENSGT00940000160496.b ENSGT00940000154673.a ENSGT00730000111052 ENSGT00390000001801 ENSGT00940000157749 ENSGT00390000007153.a.a ENSGT00390000010721.a.a.a.a.c.a.d ENSGT00940000160263 ENSGT00940000155290.C ENSGT00390000009310.j.b ENSGT00390000008802.m.a ENSGT00440000033872 ENSGT00940000154969.b ENSGT00390000003308.a.x Pan ANCESTRAL SPECIES ENSGT00940000163405 #22 Chimpanzee MODERN SPECIES 18 RIOK2 (ENSPTRG00000017100) LIX1 (ENSPTRG00000017099) ENSPTRG00000051111 LNPEP (ENSPTRG00000017097) ERAP2 (ENSPTRG00000017096) ERAP1 (ENSPTRG00000017095) CAST (ENSPTRG00000017093) CDH18 (ENSPTRG00000016752) ENSPTRG00000052439 ENSPTRG00000021694 ENSPTRG00000031492 ENSPTRG00000029812 ENSPTRG00000049884 CDH12 (ENSPTRG00000016755) ENSPTRG00000051505 PRDM9 (ENSPTRG00000028674) #22 ENSPTRG00000047561 ENSPTRG00000039522 CDH10 (ENSPTRG00000016758) ENSPTRG00000046671 ENSPTRG00000041581 ENSPTRG00000021972 CDH9 (ENSPTRG00000016759) ENSPTRG00000051592 CDH6 (ENSPTRG00000016761) DROSHA (ENSPTRG00000016762) C5H5orf22 (ENSPTRG00000016763) PDZD2 (ENSPTRG00000016765) GOLPH3 (ENSPTRG00000016768) ENSPTRG00000045770 MTMR12 (ENSPTRG00000016770) Human MODERN SPECIES 17 TAF11L3 (ENSG00000284439) TAF11L4 (ENSG00000284283) TAF11L5 (ENSG00000284234) TAF11L6 (ENSG00000284042) TAF11L7 (ENSG00000284465) TAF11L8 (ENSG00000283967) TAF11L9 (ENSG00000283988) TAF11L10 (ENSG00000284356) TAF11L11 (ENSG00000283740) TAF11L12 (ENSG00000249156) TAF11L13 (ENSG00000283776) TAF11L14 (ENSG00000250782) H3Y1 (ENSG00000269466) CDH18 (ENSG00000145526) CDH12 (ENSG00000154162) PRDM9 (ENSG00000164256) #22 CDH10 (ENSG00000040731) CDH9 (ENSG00000113100) CDH6 (ENSG00000113361) DROSHA (ENSG00000113360) C5orf22 (ENSG00000082213) PDZD2 (ENSG00000133401) GOLPH3 (ENSG00000113384) MTMR12 (ENSG00000150712) ZFR (ENSG00000056097) SUB1 (ENSG00000113387) NPR3 (ENSG00000113389) TARS1 (ENSG00000113407) ADAMTS12 (ENSG00000151388) RXFP3 (ENSG00000182631) SLC45A2 (ENSG00000164175) Gibbon MODERN SPECIES 21 MARCHF11 (ENSNLEG00000032192) ZNF622 (ENSNLEG00000011876) ENSNLEG00000011893 RETREG1 (ENSNLEG00000030442) MYO10 (ENSNLEG00000011899) ENSNLEG00000018903 BASP1 (ENSNLEG00000011959) ENSNLEG00000031258 ENSNLEG00000035479 CDH18 (ENSNLEG00000011961) ENSNLEG00000029518 ENSNLEG00000032705 ENSNLEG00000011990 ENSNLEG00000032467 ENSNLEG00000032385 ENSNLEG00000031321 #22 CDH10 (ENSNLEG00000012000) CDH9 (ENSNLEG00000012011) ENSNLEG00000033215 ENSNLEG00000029200 CDH6 (ENSNLEG00000013944) DROSHA (ENSNLEG00000013963) C5orf22 (ENSNLEG00000014007) PDZD2 (ENSNLEG00000014024) GOLPH3 (ENSNLEG00000028554) ENSNLEG00000033362 MTMR12 (ENSNLEG00000014059) ZFR (ENSNLEG00000014098) ENSNLEG00000031879 SUB1 (ENSNLEG00000036068) ENSNLEG00000019201 Platyrrhini ANCESTRAL SPECIES ENSGT00940000163405 #22 Cebidae ANCESTRAL SPECIES ENSGT00940000163405 #22 Marmoset MODERN SPECIES 12 PRDM9 (ENSCJAG00000010419) #22 DBNDD1 (ENSCJAG00000010477) GAS8 (ENSCJAG00000010454) DEF8 (ENSCJAG00000010490) ENSCJAG00000073862 TUBB3 (ENSCJAG00000004826) MC1R (ENSCJAG00000046104) TCF25 (ENSCJAG00000010545) SPIRE2 (ENSCJAG00000076202) FANCA (ENSCJAG00000010686) ZNF276 (ENSCJAG00000010721) VPS9D1 (ENSCJAG00000010650) SPATA2L (ENSCJAG00000010745) CDK10 (ENSCJAG00000010752) SPATA33 (ENSCJAG00000069778) CHMP1A (ENSCJAG00000087370) Strepsirrhini ANCESTRAL SPECIES ENSGT00940000163405 #22 Lemuriformes ANCESTRAL SPECIES ENSGT00940000163405 #22 Mouse lemur MODERN SPECIES 12 ENSMICG00000027620 PRDM9 (ENSMICG00000037613) #22 ENSMICG00000037063 GAS8 (ENSMICG00000013982) DBNDD1 (ENSMICG00000028045) ENSMICG00000013953 DEF8 (ENSMICG00000013942) TUBB3 (ENSMICG00000000079) MC1R (ENSMICG00000044903) TCF25 (ENSMICG00000000078) SPIRE2 (ENSMICG00000000077) FANCA (ENSMICG00000003300) ENSMICG00000028777 ZNF276 (ENSMICG00000003291) VPS9D1 (ENSMICG00000003280) SPATA2L (ENSMICG00000035332) CDK10 (ENSMICG00000003270) Bushbaby MODERN SPECIES 169 BAG5 (ENSOGAG00000031671) TRMT61A (ENSOGAG00000027762) CKB (ENSOGAG00000026224) ENSOGAG00000027526 LGALS3 (ENSOGAG00000003473) MAPK1IP1L (ENSOGAG00000003471) SOCS4 (ENSOGAG00000003470) WDHD1 (ENSOGAG00000003465) GCH1 (ENSOGAG00000006341) SAMD4A (ENSOGAG00000009678) CGRRF1 (ENSOGAG00000009674) GMFB (ENSOGAG00000009669) CNIH1 (ENSOGAG00000024582) CDKN3 (ENSOGAG00000009667) BMP4 (ENSOGAG00000031354) ENSOGAG00000025273 #22 ENSOGAG00000017230 FERMT2 (ENSOGAG00000010017) GNPNAT1 (ENSOGAG00000010015) STYX (ENSOGAG00000010012) PSMC6 (ENSOGAG00000010011) ERO1A (ENSOGAG00000010005) GPR137C (ENSOGAG00000010004) TXNDC16 (ENSOGAG00000033702) PTGER2 (ENSOGAG00000024889) PTGDR (ENSOGAG00000024123) NID2 (ENSOGAG00000013237) RTRAF (ENSOGAG00000013232) GNG2 (ENSOGAG00000006566) FRMD6 (ENSOGAG00000007080) TMX1 (ENSOGAG00000006427) Atlantogenata ANCESTRAL SPECIES ENSGT00940000163405 #22 Xenarthra ANCESTRAL SPECIES ENSGT00940000163405 #22 Sloth DUPLICATION Sloth MODERN SPECIES 9205 ENSCHOG00000005861 #22 Sloth MODERN SPECIES 8147 ENSCHOG00000012879 #22 Afrotheria DUPLICATION Afrotheria DUPLICATION Afrotheria ANCESTRAL SPECIES ENSGT00940000163405.c.a #22 Tenrec DUPLICATION Tenrec MODERN SPECIES 8371 ENSETEG00000011954 #22 Tenrec MODERN SPECIES 14041 ENSETEG00000009281 #22 Afrotheria ANCESTRAL SPECIES ENSGT00940000163405.c.b #22 Afrotheria_a ANCESTRAL SPECIES ENSGT00940000163405.c.b #22 Elephant MODERN SPECIES 551 NPEPL1 (ENSLAFG00000030782) APCDD1L (ENSLAFG00000031497) VAPB (ENSLAFG00000006148) RAB22A (ENSLAFG00000003688) ENSLAFG00000006238 ENSLAFG00000014475 C20orf85 (ENSLAFG00000026523) PMEPA1 (ENSLAFG00000028967) ENSLAFG00000011094 PCK1 (ENSLAFG00000009266) CTCFL (ENSLAFG00000009261) RBM38 (ENSLAFG00000032066) RAE1 (ENSLAFG00000004501) SPO11 (ENSLAFG00000015320) BMP7 (ENSLAFG00000006468) ENSLAFG00000006475 #22 TFAP2C (ENSLAFG00000007788) ENSLAFG00000020518 GCNT7 (ENSLAFG00000031589) RTF2 (ENSLAFG00000008399) CASS4 (ENSLAFG00000008394) CSTF1 (ENSLAFG00000008393) AURKA (ENSLAFG00000008392) FAM210B (ENSLAFG00000008388) MC3R (ENSLAFG00000005954) CBLN4 (ENSLAFG00000004861) ENSLAFG00000031183 DOK5 (ENSLAFG00000030432) PFDN4 (ENSLAFG00000017064) CYP24A1 (ENSLAFG00000017059) BCAS1 (ENSLAFG00000002312) Tenrec MODERN SPECIES 11560 ENSETEG00000008803 #22 Afrotheria ANCESTRAL SPECIES ENSGT00940000163405.d #22 Tenrec MODERN SPECIES 8708 ENSETEG00000017770 #22 Afrotheria_a ANCESTRAL SPECIES ENSGT00940000163405.d #22 Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax MODERN SPECIES 10769 ENSPCAG00000016683 #22 Hyrax MODERN SPECIES 11527 ENSPCAG00000000157 #22 Hyrax MODERN SPECIES 10920 ENSPCAG00000016202 #22 Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax MODERN SPECIES 12191 ENSPCAG00000018768 #22 Hyrax MODERN SPECIES 10768 ENSPCAG00000018809 #22 Hyrax MODERN SPECIES 10508 ENSPCAG00000018815 #22 Hyrax MODERN SPECIES 10247 ENSPCAG00000013100 #22 Hyrax DUPLICATION Hyrax DUPLICATION Hyrax MODERN SPECIES 11270 ENSPCAG00000018892 #22 Hyrax MODERN SPECIES 9480 ENSPCAG00000018760 #22 Hyrax MODERN SPECIES 9943 ENSPCAG00000016820 #22 Hyrax DUPLICATION Hyrax MODERN SPECIES 9838 ENSPCAG00000013716 #22 Hyrax MODERN SPECIES 11439 ENSPCAG00000011112 #22 Hyrax DUPLICATION Hyrax DUPLICATION Hyrax DUPLICATION Hyrax MODERN SPECIES 10321 ENSPCAG00000006667 #22 Hyrax MODERN SPECIES 10548 ENSPCAG00000012277 #22 Hyrax MODERN SPECIES 8771 ENSPCAG00000005008 #22 Hyrax MODERN SPECIES 4745 ENSPCAG00000007623 #22 Hyrax MODERN SPECIES 11881 ENSPCAG00000011549 #22 Hyrax MODERN SPECIES 10249 ENSPCAG00000013379 #22 Hyrax MODERN SPECIES 7401 ENSPCAG00000012125 #22 Sauria ANCESTRAL SPECIES ENSGT00940000163405 #22 Archelosauria ANCESTRAL SPECIES ENSGT00940000163405 #22 Cryptodira ANCESTRAL SPECIES ENSGT00940000163405 #22 Testudinoidea ANCESTRAL SPECIES ENSGT00940000163405 #22 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES 102 ENSGT00520000055626.b ENSGT00940000161032 ENSGT00940000157457 ENSGT01100000263917 ENSGT00940000160435 ENSGT00940000154323.a ENSGT00390000002866.a ENSGT01100000263552.g.b.b.a.a.b.a.a ENSGT01100000263552.g.b.b.a.a.b.a.b ENSGT00390000000050 ENSGT00940000160533 ENSGT00940000164039.c ENSGT00390000009109 ENSGT00940000160447 ENSGT00940000163405.i #22 ENSGT00940000154715.b.k.b.a.b.b.b.a.b.b.a ENSGT01100000263552.g.b.b.b.d.b.b.b Three-toed box turtle MODERN SPECIES 404 ENSTMTG00000012035 PRR14 (ENSTMTG00000012022) ENSTMTG00000011968 SRCAP (ENSTMTG00000011122) ENSTMTG00000011019 PHKG2 (ENSTMTG00000010992) CFAP119 (ENSTMTG00000010940) RNF40 (ENSTMTG00000010884) ENSTMTG00000010869 ENSTMTG00000010810 RUSF1 (ENSTMTG00000010768) ENSTMTG00000010710 SLC5A2 (ENSTMTG00000010638) ARMC5 (ENSTMTG00000010622) TGFB1I1 (ENSTMTG00000010583) ENSTMTG00000010553 #22 ENSTMTG00000010538 ENSTMTG00000010525 ENSTMTG00000010509 ENSTMTG00000010491 ENSTMTG00000010473 ENSTMTG00000010348 ITGAL (ENSTMTG00000010225) ENSTMTG00000010206 ENSTMTG00000010118 ENSTMTG00000010085 ENSTMTG00000010065 ENSTMTG00000010058 ENSTMTG00000010045 ENSTMTG00000010029 ENSTMTG00000010011 painted turtle MODERN SPECIES 996 PRR14 (ENSCPBG00000013677) FBRS (ENSCPBG00000013682) SRCAP (ENSCPBG00000013714) ENSCPBG00000013784 PHKG2 (ENSCPBG00000013786) CFAP119 (ENSCPBG00000013788) RNF40 (ENSCPBG00000013790) ENSCPBG00000013792 ENSCPBG00000013793 RUSF1 (ENSCPBG00000013795) ENSCPBG00000013797 SLC5A2 (ENSCPBG00000013806) ENSCPBG00000013811 ENSCPBG00000013813 TGFB1I1 (ENSCPBG00000013816) ENSCPBG00000013818 #22 ENSCPBG00000013820 ENSCPBG00000013821 ENSCPBG00000013822 ENSCPBG00000013824 ENSCPBG00000013827 ENSCPBG00000013829 ITPA (ENSCPBG00000013830) ENSCPBG00000013832 ENSCPBG00000013833 ENSCPBG00000013835 Emydidae ANCESTRAL SPECIES ENSGT00940000163405.j #22 painted turtle MODERN SPECIES 976 GRIN1 (ENSCPBG00000000517) ENSCPBG00000000677 RNF224 (ENSCPBG00000000719) ENSCPBG00000000736 ENSCPBG00000000745 #22 ENSCPBG00000000756 RNF208 (ENSCPBG00000000767) ENSCPBG00000000779 ENSCPBG00000000793 NDOR1 (ENSCPBG00000000805) TPRN (ENSCPBG00000000829) ANAPC2 (ENSCPBG00000000861) ENSCPBG00000000889 TOR4A (ENSCPBG00000000899) ENSCPBG00000000907 ENSCPBG00000000931 ENSCPBG00000000984 TUBB4B (ENSCPBG00000001005) Lepidosauria ANCESTRAL SPECIES ENSGT00940000163405 #22 Episquamata ANCESTRAL SPECIES ENSGT00940000163405 #22 Toxicofera ANCESTRAL SPECIES ENSGT00940000163405 #22 Elapidae ANCESTRAL SPECIES ENSGT00940000163405 #22 Indian cobra MODERN SPECIES 1 ENSNNAG00000011172 ENSNNAG00000011162 ENSNNAG00000011139 ENSNNAG00000011123 ENSNNAG00000011107 ENSNNAG00000011021 ENSNNAG00000010991 ENSNNAG00000010942 ENSNNAG00000010891 ENSNNAG00000010877 ENSNNAG00000010856 ENSNNAG00000010843 ENSNNAG00000010825 ENSNNAG00000010802 ENSNNAG00000010780 ENSNNAG00000010755 #22 ENSNNAG00000010734 ENSNNAG00000010716 ENSNNAG00000010702 ENSNNAG00000010681 ENSNNAG00000010654 ENSNNAG00000010631 ENSNNAG00000010553 ENSNNAG00000010539 ENSNNAG00000010520 ENSNNAG00000010502 ENSNNAG00000010477 ENSNNAG00000010467 ENSNNAG00000010408 ENSNNAG00000010356 ENSNNAG00000010334 Anura ANCESTRAL SPECIES ENSGT00940000163405 #22 Leishan spiny toad MODERN SPECIES 6 ENSLLEG00000021058 ADGRL1 (ENSLLEG00000019002) ENSLLEG00000018851 ENSLLEG00000018637 ENSLLEG00000018616 DDX39A (ENSLLEG00000018368) ENSLLEG00000018002 ENSLLEG00000017384 GIPC1 (ENSLLEG00000017163) ENSLLEG00000017025 ENSLLEG00000017003 ENSLLEG00000016988 TECR (ENSLLEG00000016511) ENSLLEG00000016466 LPAR2 (ENSLLEG00000016371) ENSLLEG00000016342 #22 ENSLLEG00000016327 ENSLLEG00000015562 NXNL1 (ENSLLEG00000015485) PGLS (ENSLLEG00000015431) ENSLLEG00000015409 COLGALT1 (ENSLLEG00000015197) ENSLLEG00000015169 ENSLLEG00000015150 ATP13A1 (ENSLLEG00000014861) CHCHD5 (ENSLLEG00000014784) ENSLLEG00000014715 ENSLLEG00000014664 ENSLLEG00000014649 ENSLLEG00000014580 ENSLLEG00000014408 Actinopterygii ANCESTRAL SPECIES ENSGT00940000163405 #22 Neopterygii ANCESTRAL SPECIES ENSGT00940000163405 #22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00940000163405 #22 Clupeocephala ANCESTRAL SPECIES ENSGT00940000163405 #22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000163405 #22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00940000163405 #22 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00940000163405.k #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000163405.k #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000163405.k #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000163405.k #22 Coho salmon MODERN SPECIES 546 ENSOKIG00005041296 #22 ENSOKIG00005041309 ENSOKIG00005041322 ENSOKIG00005041333 ENSOKIG00005041340 ENSOKIG00005041349 Rainbow trout MODERN SPECIES 4 ENSOMYG00000070647 ENSOMYG00000004131 ENSOMYG00000039838 ENSOMYG00000004145 ENSOMYG00000004041 ENSOMYG00000004033 ENSOMYG00000071759 ENSOMYG00000003880 ENSOMYG00000067520 ENSOMYG00000003714 ENSOMYG00000061235 ENSOMYG00000003547 ENSOMYG00000003687 ENSOMYG00000024317 ENSOMYG00000029924 ENSOMYG00000045743 #22 ENSOMYG00000035809 ENSOMYG00000003470 ENSOMYG00000063549 ENSOMYG00000003401 ENSOMYG00000073026 ENSOMYG00000073898 ENSOMYG00000070839 ENSOMYG00000004689 ENSOMYG00000062996 ENSOMYG00000045764 ENSOMYG00000058477 ENSOMYG00000063931 ENSOMYG00000074520 ENSOMYG00000061145 ENSOMYG00000045653 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00940000163405.l.a #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000163405.l.a #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000163405.l.a #22 Rainbow trout MODERN SPECIES 4 ENSOMYG00000049117 ENSOMYG00000057153 ENSOMYG00000038211 ENSOMYG00000065553 ENSOMYG00000033694 ENSOMYG00000076043 ENSOMYG00000066033 ENSOMYG00000048129 ENSOMYG00000058078 ENSOMYG00000070143 ENSOMYG00000054379 ENSOMYG00000015347 ENSOMYG00000015320 ENSOMYG00000076941 ENSOMYG00000055523 ENSOMYG00000015249 #22 ENSOMYG00000065939 ENSOMYG00000015242 ENSOMYG00000072050 ENSOMYG00000071089 ENSOMYG00000049784 ENSOMYG00000067117 THUMPD1 (ENSOMYG00000056954) ENSOMYG00000075393 ENSOMYG00000071858 ENSOMYG00000063838 ENSOMYG00000075416 ENSOMYG00000048917 ENSOMYG00000052314 ENSOMYG00000077569 ENSOMYG00000073673 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000163405.l.a #22 Chinook salmon MODERN SPECIES 1266 ENSOTSG00005039337 #22 ENSOTSG00005039342 ENSOTSG00005039348 Huchen MODERN SPECIES 11815 ENSHHUG00000019414 #22 Salmoninae ANCESTRAL SPECIES ENSGT00940000163405.l.b #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000163405.l.b #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000163405.l.b #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000163405.l.b #22 Chinook salmon MODERN SPECIES 25 baiap2l2b (ENSOTSG00005044957) vasna (ENSOTSG00005044956) ENSOTSG00005044955 ENSOTSG00005044954 crtac1a (ENSOTSG00005044946) golga7ba (ENSOTSG00005044944) zfyve27 (ENSOTSG00005044942) ENSOTSG00005044941 ENSOTSG00005044939 ENSOTSG00005044937 ENSOTSG00005044935 ENSOTSG00005044934 ENSOTSG00005044933 ENSOTSG00005044932 ENSOTSG00005044928 ENSOTSG00005044921 #22 ENSOTSG00005044920 ENSOTSG00005044918 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000163405 #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000163405 #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00940000163405 #22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000163405 #22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000163405 #22 Atherinomorphae ANCESTRAL SPECIES ENSGT00940000163405 #22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00940000163405 #22 Aplocheiloidei ANCESTRAL SPECIES ENSGT00940000163405 #22 Mangrove rivulus MODERN SPECIES 574 ccr12a (ENSKMAG00000002593) ENSKMAG00000002606 #22 ENSKMAG00000002641 Reedfish MODERN SPECIES ENSECRG00000001320 ENSECRG00000001288 ENSECRG00000001255 ENSECRG00000001244 ENSECRG00000001237 ENSECRG00000001223 ENSECRG00000001189 ENSECRG00000001174 ENSECRG00000001166 ENSECRG00000001154 ENSECRG00000001146 ENSECRG00000001133 ENSECRG00000001113 ENSECRG00000001099 ENSECRG00000001045 ENSECRG00000001016 #22 ENSECRG00000000999 ENSECRG00000000975 si:ch73-130a3.4 (ENSECRG00000000959) ENSECRG00000000943 ENSECRG00000000930 ENSECRG00000000910 ENSECRG00000000879 ENSECRG00000000837 ENSECRG00000000796 ENSECRG00000000767 ENSECRG00000000750 ENSECRG00000000742 ENSECRG00000000728 ENSECRG00000000711 ENSECRG00000000692