Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #10	ENSGT00510000046470.a.a.a.d.b #11	ENSGT00940000157168 #13	ENSGT00940000156545 #15	ENSGT00940000159954 #16	ENSGT00940000155150.a #17	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162642 #20	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000154340.A #26	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140	ENSGT00940000158059
Sciuridae	ANCESTRAL SPECIES	43						ENSGT00940000160665 #10	ENSGT00510000046470.a.a.a.d.b #11	ENSGT00940000157168 #13	ENSGT00940000156545 #15	ENSGT00940000159954 #16	ENSGT00940000155150.a #17	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162642 #20	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000154340.A #26	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140	ENSGT00940000158059	ENSGT00950000182924.B.a.a
Marmotini	ANCESTRAL SPECIES	51						ENSGT00940000160665 #10	ENSGT00510000046470.a.a.a.d.b #11	ENSGT00940000157168 #13	ENSGT00940000156545 #15	ENSGT00940000159954 #16	ENSGT00940000155150.a #17	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162642 #20	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000154340.A #26	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140	ENSGT00940000158059	ENSGT00950000182924.B.a.a
Marmotini_b	ANCESTRAL SPECIES	164						ENSGT00940000160665 #10	ENSGT00510000046470.a.a.a.d.b #11	ENSGT00940000157168 #13	ENSGT00940000156545 #15	ENSGT00940000159954 #16	ENSGT00940000155150.a #17	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162642 #20	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000154340.A #26	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140	ENSGT00940000158059	ENSGT00950000182924.B.a.a
Arctic ground squirrel	MODERN SPECIES	71				NDST3 (ENSUPAG00010012624) #10	TRAM1L1 (ENSUPAG00010012695) #11	ENSUPAG00010012700 #12	NDST4 (ENSUPAG00010012709) #13	ENSUPAG00010012728 #14	UGT8 (ENSUPAG00010012741) #15	ARSJ (ENSUPAG00010012755) #16	CAMK2D (ENSUPAG00010012766) #17	ANK2 (ENSUPAG00010013870) #18	LARP7 (ENSUPAG00010014284) #19	ENSUPAG00010014334 #20	ENSUPAG00010014384 #21	NEUROG2 (ENSUPAG00010014395) #22	ALPK1 (ENSUPAG00010014402) #23	TIFA (ENSUPAG00010014430) #24	AP1AR (ENSUPAG00010014433) #25	FAM241A (ENSUPAG00010014462) #26
Squirrel	MODERN SPECIES	163						ENSSTOG00000034598 #14	NDST4 (ENSSTOG00000013994) #13	UGT8 (ENSSTOG00000005626) #15	ENSSTOG00000024888	ARSJ (ENSSTOG00000015417) #16	CAMK2D (ENSSTOG00000001689) #17	ANK2 (ENSSTOG00000001648) #18	LARP7 (ENSSTOG00000011789) #19	ENSSTOG00000025752 #20	ENSSTOG00000011761 #21	NEUROG2 (ENSSTOG00000011758) #22	ALPK1 (ENSSTOG00000023490) #23	TIFA (ENSSTOG00000024540) #24	AP1AR (ENSSTOG00000011726) #25	FAM241A (ENSSTOG00000026762) #26	ENSSTOG00000025728	ENPEP (ENSSTOG00000019984)	ELOVL6 (ENSSTOG00000013096)	LRIT3 (ENSSTOG00000019825)	RRH (ENSSTOG00000026445)	GAR1 (ENSSTOG00000005577)	CFI (ENSSTOG00000013356)	PLA2G12A (ENSSTOG00000007365)	CASP6 (ENSSTOG00000022572)	MCUB (ENSSTOG00000012419)	SEC24B (ENSSTOG00000025309)
Alpin marmot	MODERN SPECIES	14		NDST3 (ENSMMMG00000012053) #10	ENSMMMG00000012041	TRAM1L1 (ENSMMMG00000012035) #11	ENSMMMG00000012009 #14	NDST4 (ENSMMMG00000011995) #13	UGT8 (ENSMMMG00000011973) #15	ARSJ (ENSMMMG00000011955) #16	CAMK2D (ENSMMMG00000011571) #17	ENSMMMG00000011465	ENSMMMG00000011445 #18	ENSMMMG00000011375 #18	LARP7 (ENSMMMG00000011295) #19	ENSMMMG00000011252 #20	ENSMMMG00000011234 #21	NEUROG2 (ENSMMMG00000011232) #22	ALPK1 (ENSMMMG00000011177) #23	TIFA (ENSMMMG00000011166) #24	AP1AR (ENSMMMG00000011129) #25	ENSMMMG00000011118 #26	ENSMMMG00000011114	ENSMMMG00000011061	ENPEP (ENSMMMG00000011011)	ENSMMMG00000011001	ELOVL6 (ENSMMMG00000010968)	EGF (ENSMMMG00000010685)	ENSMMMG00000010673	LRIT3 (ENSMMMG00000010663)	RRH (ENSMMMG00000010634)	GAR1 (ENSMMMG00000010623)	CFI (ENSMMMG00000010613)
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005014191	NDST3 (ENSSVLG00005014258) #10	ENSSVLG00005014381	TRAM1L1 (ENSSVLG00005014438) #11	ENSSVLG00005014482	NDST4 (ENSSVLG00005014540) #13	UGT8 (ENSSVLG00005014683) #15	ENSSVLG00005014762	ARSJ (ENSSVLG00005014811) #16	ENSSVLG00005014849	CAMK2D (ENSSVLG00005014926) #17	ANK2 (ENSSVLG00005021727) #18	ENSSVLG00005025975	ENSSVLG00005025976 #19	ZGRF1 (ENSSVLG00005025978) #20	NEUROG2 (ENSSVLG00005025979) #22	ALPK1 (ENSSVLG00005025980) #23	ENSSVLG00005025981 #24	ENSSVLG00005025982 #25	FAM241A (ENSSVLG00005025983) #26	ENSSVLG00005025985	ENSSVLG00005025987	ENPEP (ENSSVLG00005025988)	ENSSVLG00005025989	ENSSVLG00005025991	ELOVL6 (ENSSVLG00005025992)	EGF (ENSSVLG00005025994)	LRIT3 (ENSSVLG00005025995)	RRH (ENSSVLG00005025996)	GAR1 (ENSSVLG00005025997)	CFI (ENSSVLG00005025998)
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #10	ENSGT00510000046470.a.a.a.d.b #11	ENSGT00940000157168 #13	ENSGT00940000156545 #15	ENSGT00940000159954 #16	ENSGT00940000159769.b	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162642 #20	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000162789	ENSGT00940000168645	ENSGT00940000154340.A #26	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #10	ENSGT00510000046470.a.a.a.d.b #11	ENSGT00940000157168 #13	ENSGT00940000156545 #15	ENSGT00940000159954 #16	ENSGT00940000159769.b	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000162789	ENSGT00940000168645	ENSGT00940000154340.A #26	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00940000156449	ENSGT00940000153534.A.t.a	ENSGT00940000154319.v	ENSGT00860000133854	ENSGT00940000158239.b	ENSGT00940000159606	ENSGT00940000159383	ENSGT00390000017123.b	ENSGT00940000158075	ENSGT00550000074935	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00940000155279.C #18	ENSGT00940000154949.b #19	ENSGT00940000162335 #21	ENSGT00940000162895 #22	ENSGT00940000159753 #23	ENSGT00940000154589.b #24	ENSGT00390000002219 #25	ENSGT00940000168645	ENSGT00940000154340.A #26	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042	ENSGT00390000008798.c	ENSGT00940000155140
Long-tailed chinchilla	MODERN SPECIES	164	KIAA2012 (ENSCLAG00000004402)	FZD7 (ENSCLAG00000017729)	CDK15 (ENSCLAG00000003400)	THAP1 (ENSCLAG00000003969)	RNF170 (ENSCLAG00000004208)	HOOK3 (ENSCLAG00000009006)	FNTA (ENSCLAG00000013021)	POMK (ENSCLAG00000011102)	HGSNAT (ENSCLAG00000011347)	ENSCLAG00000013776	ENSCLAG00000003872	ENSCLAG00000004196	ANK2 (ENSCLAG00000011230) #18	LARP7 (ENSCLAG00000005894) #19	ENSCLAG00000003383 #21	NEUROG2 (ENSCLAG00000006433) #22	ALPK1 (ENSCLAG00000005257) #23	TIFA (ENSCLAG00000005429) #24	AP1AR (ENSCLAG00000005533) #25	PITX2 (ENSCLAG00000006555)	ENSCLAG00000007968
Degu	MODERN SPECIES	57	BMPR2 (ENSODEG00000011132)	NOP58 (ENSODEG00000010151)	ENSODEG00000012987	FZD7 (ENSODEG00000010108)	CDK15 (ENSODEG00000009574)	ENSODEG00000009593	RNF170 (ENSODEG00000009838)	HOOK3 (ENSODEG00000010474)	ENSODEG00000010592	POMK (ENSODEG00000011123)	ENSODEG00000009832 #18	ENSODEG00000011100 #18	LARP7 (ENSODEG00000011121) #19	ENSODEG00000019792	ENSODEG00000010327 #21	NEUROG2 (ENSODEG00000019918) #22	ENSODEG00000009949	ENSODEG00000019796	ENSODEG00000010616	FAM241A (ENSODEG00000011489) #26	ENSODEG00000019979	PITX2 (ENSODEG00000010082)	ENSODEG00000010195	ENSODEG00000011196	ENSODEG00000009818	ENSODEG00000010355	LRIT3 (ENSODEG00000014302)	RRH (ENSODEG00000010773)	GAR1 (ENSODEG00000011083)	CFI (ENSODEG00000010069)	ENSODEG00000011603
Naked mole-rat female	MODERN SPECIES	19	ENPEP (ENSHGLG00000002965)	ELOVL6 (ENSHGLG00000037368)	ENSHGLG00000034086	ENSHGLG00000002404	RRH (ENSHGLG00000004643)	GAR1 (ENSHGLG00000000493)	PLA2G12A (ENSHGLG00000000692)	CASP6 (ENSHGLG00000000729)	ENSHGLG00000000975	ENSHGLG00000001432	ENSHGLG00000003109 #18	ENSHGLG00000036692 #20	ENSHGLG00000046553 #21	ENSHGLG00000001486	LARP7 (ENSHGLG00000002716) #19	NEUROG2 (ENSHGLG00000044856) #22	ENSHGLG00000020125	ALPK1 (ENSHGLG00000019570) #23	TIFA (ENSHGLG00000033392) #24	ENSHGLG00000002634 #25	ENSHGLG00000035535	ENSHGLG00000048412 #26	ENSHGLG00000037923	ENSHGLG00000042048	ENSHGLG00000032857	ENSHGLG00000034419	ENSHGLG00000048161	ENSHGLG00000045519	ENSHGLG00000048714	ENSHGLG00000037613	ENSHGLG00000043305