Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183077.a.b #22
Gnathostomata	ANCESTRAL SPECIES	33								ENSGT00940000156027 #8	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000164549
Euteleostomi	ANCESTRAL SPECIES	9	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000154527.b	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000154527.b	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000162955
Amniota	ANCESTRAL SPECIES	22	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Mammalia	ANCESTRAL SPECIES	18	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.f	ENSGT00950000183041.A.e	ENSGT00390000014109	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Theria	ANCESTRAL SPECIES	28	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973 #27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Eutheria	ANCESTRAL SPECIES	14	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Primates	ANCESTRAL SPECIES	1	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132 #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.a.c #9	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266.a #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.d #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583.i
Hominidae	ANCESTRAL SPECIES	2	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.a.c #9	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266.a #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.d #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583.i
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.a.c #9	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266.a #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00940000153309.c.a.e.b #25	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.d #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37
Gorilla	MODERN SPECIES	16	SLC6A11 (ENSGGOG00000000379) #7	SLC6A1 (ENSGGOG00000000382) #8	ENSGGOG00000016573 #9	HRH1 (ENSGGOG00000038168) #10	ATG7 (ENSGGOG00000003493) #11	VGLL4 (ENSGGOG00000003500) #12	ENSGGOG00000039682 #13	SYN2 (ENSGGOG00000009751) #14	TIMP4 (ENSGGOG00000009761) #15	ENSGGOG00000038254 #16	ENSGGOG00000038928 #17	ENSGGOG00000043543 #18	PPARG (ENSGGOG00000013117) #19	TSEN2 (ENSGGOG00000012488) #20	ENSGGOG00000041526 #21	MKRN2 (ENSGGOG00000000429) #22	RAF1 (ENSGGOG00000023025) #23	TMEM40 (ENSGGOG00000028438) #24	ENSGGOG00000021954 #25	CAND2 (ENSGGOG00000001004) #26	RPL32 (ENSGGOG00000043568) #27	IQSEC1 (ENSGGOG00000001008) #28	NUP210 (ENSGGOG00000015096) #29	HDAC11 (ENSGGOG00000007735) #30	FBLN2 (ENSGGOG00000011561) #31	ENSGGOG00000042871 #32	WNT7A (ENSGGOG00000012654) #33	CHCHD4 (ENSGGOG00000024077) #34	TMEM43 (ENSGGOG00000016577) #35	XPC (ENSGGOG00000009997) #36	LSM3 (ENSGGOG00000010006) #37
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.a.c #9	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266.a #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00940000153309.c.a.e.b #25	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.d #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583.i
Human	MODERN SPECIES	15	ENSG00000289763	GHRL (ENSG00000157017)	SEC13 (ENSG00000157020)	ATP2B2 (ENSG00000157087)	SLC6A11 (ENSG00000132164) #7	SLC6A1 (ENSG00000157103) #8	HRH1 (ENSG00000196639) #10	ATG7 (ENSG00000197548) #11	VGLL4 (ENSG00000144560) #12	TAMM41 (ENSG00000144559) #13	SYN2 (ENSG00000157152) #14	TIMP4 (ENSG00000157150) #15	PPARG (ENSG00000132170) #19	TSEN2 (ENSG00000154743) #20	MKRN2OS (ENSG00000225526) #21	MKRN2 (ENSG00000075975) #22	RAF1 (ENSG00000132155) #23	TMEM40 (ENSG00000088726) #24	CAND2 (ENSG00000144712) #26	ENSG00000289809	RPL32 (ENSG00000144713) ##27	IQSEC1 (ENSG00000144711) #28	NUP210 (ENSG00000132182) #29	HDAC11 (ENSG00000163517) #30	FBLN2 (ENSG00000163520) #31	WNT7A (ENSG00000154764) #33	CHCHD4 (ENSG00000163528) #34	TMEM43 (ENSG00000170876) #35	XPC (ENSG00000154767) #36	LSM3 (ENSG00000170860) #37	SLC6A6 (ENSG00000131389)
Pan	ANCESTRAL SPECIES	2	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.a.c #9	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00910000148097 #18	ENSGT00940000158273 #19	ENSGT00390000013266.a #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00940000153309.c.a.e.b #25	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.d #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37
Bonobo	MODERN SPECIES	16	ENSPPAG00000029625	SLC6A11 (ENSPPAG00000039217) #7	SLC6A1 (ENSPPAG00000042842) #8	HRH1 (ENSPPAG00000023416) #10	ATG7 (ENSPPAG00000040386) #11	VGLL4 (ENSPPAG00000035709) #12	TAMM41 (ENSPPAG00000037692) #13	ENSPPAG00000040309	SYN2 (ENSPPAG00000038622) #14	TIMP4 (ENSPPAG00000036078) #15	ENSPPAG00000030837 #17	ENSPPAG00000028973 #18	PPARG (ENSPPAG00000029006) #19	TSEN2 (ENSPPAG00000035317) #20	MKRN2OS (ENSPPAG00000032216) #21	MKRN2 (ENSPPAG00000036523) #22	RAF1 (ENSPPAG00000035239) #23	ENSPPAG00000024005	TMEM40 (ENSPPAG00000019163) #24	ENSPPAG00000036413 #25	CAND2 (ENSPPAG00000004317) #26	RPL32 (ENSPPAG00000008188) ##27	IQSEC1 (ENSPPAG00000036448) #28	ENSPPAG00000028546	NUP210 (ENSPPAG00000037715) #29	HDAC11 (ENSPPAG00000037567) #30	FBLN2 (ENSPPAG00000015671) #31	WNT7A (ENSPPAG00000030187) #33	CHCHD4 (ENSPPAG00000032925) #34	TMEM43 (ENSPPAG00000000804) #35	XPC (ENSPPAG00000043453) #36
Chimpanzee	MODERN SPECIES	16	SLC6A11 (ENSPTRG00000014621) #7	SLC6A1 (ENSPTRG00000014622) #8	ENSPTRG00000050374 #9	HRH1 (ENSPTRG00000030304) #10	ATG7 (ENSPTRG00000014625) #11	VGLL4 (ENSPTRG00000014626) #12	TAMM41 (ENSPTRG00000014628) #13	ENSPTRG00000049448	SYN2 (ENSPTRG00000052430) #14	TIMP4 (ENSPTRG00000014630) #15	ENSPTRG00000043822 #17	ENSPTRG00000045342 #18	PPARG (ENSPTRG00000014632) #19	TSEN2 (ENSPTRG00000014633) #20	MKRN2OS (ENSPTRG00000046408) #21	MKRN2 (ENSPTRG00000014634) #22	RAF1 (ENSPTRG00000014635) #23	TMEM40 (ENSPTRG00000014636) #24	ENSPTRG00000051489 #25	CAND2 (ENSPTRG00000014637) #26	ENSPTRG00000050657 ##27	IQSEC1 (ENSPTRG00000014639) #28	ENSPTRG00000046540	NUP210 (ENSPTRG00000014640) #29	HDAC11 (ENSPTRG00000014641) #30	FBLN2 (ENSPTRG00000014642) #31	WNT7A (ENSPTRG00000046824) #33	CHCHD4 (ENSPTRG00000014647) #34	TMEM43 (ENSPTRG00000014648) #35	XPC (ENSPTRG00000014649) #36	LSM3 (ENSPTRG00000014650) #37
Orangutan	MODERN SPECIES	16	CLDND1 (ENSPPYG00000013614)	OR5K2 (ENSPPYG00000013615)	OR5K1 (ENSPPYG00000013616)	ENSPPYG00000013618	GABRR3 (ENSPPYG00000013620)	RIOX2 (ENSPPYG00000013621)	CRYBG3 (ENSPPYG00000033155)	ARL6 (ENSPPYG00000013623)	EPHA6 (ENSPPYG00000013624)	ENSPPYG00000013626	NSUN3 (ENSPPYG00000037583)	DHFR2 (ENSPPYG00000013628)	ARL13B (ENSPPYG00000013629)	STX19 (ENSPPYG00000013630)	ENSPPYG00000013631	MKRN2 (ENSPPYG00000013387) #22	RAF1 (ENSPPYG00000013388) #23	TMEM40 (ENSPPYG00000013389) #24	CAND2 (ENSPPYG00000013390) #26	ENSPPYG00000037343 ##27	IQSEC1 (ENSPPYG00000013393) #28	NUP210 (ENSPPYG00000013394) #29	HDAC11 (ENSPPYG00000013395) #30	FBLN2 (ENSPPYG00000013396) #31	WNT7A (ENSPPYG00000013397) #33	CHCHD4 (ENSPPYG00000025890) #34	TMEM43 (ENSPPYG00000013400) #35	XPC (ENSPPYG00000013401) #36	LSM3 (ENSPPYG00000013402) #37	SLC6A6 (ENSPPYG00000013403)	GRIP2 (ENSPPYG00000013404)
Gibbon	MODERN SPECIES	13	SEC13 (ENSNLEG00000004482)	ENSNLEG00000026798	SLC6A11 (ENSNLEG00000004525) #7	SLC6A1 (ENSNLEG00000026605) #8	ENSNLEG00000030870 #9	HRH1 (ENSNLEG00000018917) #10	ATG7 (ENSNLEG00000027005) #11	VGLL4 (ENSNLEG00000004535) #12	ENSNLEG00000004559 #13	TIMP4 (ENSNLEG00000004638) #15	ENSNLEG00000004578 #14	ENSNLEG00000029797	PPARG (ENSNLEG00000004650) #19	TSEN2 (ENSNLEG00000004696) #20	MKRN2OS (ENSNLEG00000030256) #21	MKRN2 (ENSNLEG00000004711) #22	RAF1 (ENSNLEG00000004732) #23	TMEM40 (ENSNLEG00000004755) #24	CAND2 (ENSNLEG00000004774) #26	ENSNLEG00000035616 ##27	ENSNLEG00000004798	IQSEC1 (ENSNLEG00000004793) #28	NUP210 (ENSNLEG00000004799) #29	HDAC11 (ENSNLEG00000004853) #30	FBLN2 (ENSNLEG00000004881) #31	ENSNLEG00000004941 #33	CHCHD4 (ENSNLEG00000029809) #34	TMEM43 (ENSNLEG00000004956) #35	XPC (ENSNLEG00000005000) #36	LSM3 (ENSNLEG00000005079) #37	SLC6A6 (ENSNLEG00000005084)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a.e.b ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.a.a.b.b	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a.d ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00910000147988 #32	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583
Drill	MODERN SPECIES	874											SYN2 (ENSMLEG00000030880) #14	TIMP4 (ENSMLEG00000040251) #15	PPARG (ENSMLEG00000043422) #19	TSEN2 (ENSMLEG00000038210) #20	MKRN2OS (ENSMLEG00000006675) #21	MKRN2 (ENSMLEG00000006880) #22	RAF1 (ENSMLEG00000029839) #23	ENSMLEG00000039626	TMEM40 (ENSMLEG00000039986) #24	CAND2 (ENSMLEG00000034596) #26	RPL32 (ENSMLEG00000033655) ##27	IQSEC1 (ENSMLEG00000035708) #28	NUP210 (ENSMLEG00000038717) #29	HDAC11 (ENSMLEG00000038310) #30	FBLN2 (ENSMLEG00000040866) #31	WNT7A (ENSMLEG00000042427) #33	ENSMLEG00000031201 #34	TMEM43 (ENSMLEG00000035818) #35	XPC (ENSMLEG00000041682) #36	LSM3 (ENSMLEG00000036162) #37	SLC6A6 (ENSMLEG00000040687)
Sooty mangabey	MODERN SPECIES	650	SLC6A11 (ENSCATG00000032556) #7	SLC6A1 (ENSCATG00000019250) #8	ENSCATG00000031939 ##34	HRH1 (ENSCATG00000000316) #10	ATG7 (ENSCATG00000034745) #11	VGLL4 (ENSCATG00000041543) #12	TAMM41 (ENSCATG00000033399) #13	ENSCATG00000031162	ENSCATG00000042881	SYN2 (ENSCATG00000031791) #14	TIMP4 (ENSCATG00000034145) #15	ENSCATG00000017268	PPARG (ENSCATG00000022947) #19	TSEN2 (ENSCATG00000031911) #20	MKRN2OS (ENSCATG00000040481) #21	MKRN2 (ENSCATG00000041591) #22	ENSCATG00000035852 #23	ENSCATG00000001547	ENSCATG00000031525	TMEM40 (ENSCATG00000027847) #24	CAND2 (ENSCATG00000038720) #26	RPL32 (ENSCATG00000038198) ##27	IQSEC1 (ENSCATG00000037864) #28	NUP210 (ENSCATG00000035260) #29	HDAC11 (ENSCATG00000026123) #30	FBLN2 (ENSCATG00000038061) #31	ENSCATG00000033105 #32	WNT7A (ENSCATG00000033711) #33	TMEM43 (ENSCATG00000038308) #35	XPC (ENSCATG00000036725) #36	ENSCATG00000039421 #37
Olive baboon	MODERN SPECIES	11	SEC13 (ENSPANG00000033927)	ATP2B2 (ENSPANG00000012883)	SLC6A11 (ENSPANG00000009913) #7	SLC6A1 (ENSPANG00000009643) #8	HRH1 (ENSPANG00000031157) #10	ATG7 (ENSPANG00000019142) #11	VGLL4 (ENSPANG00000024761) #12	TAMM41 (ENSPANG00000025444) #13	ENSPANG00000031360	ENSPANG00000045955	TIMP4 (ENSPANG00000001070) #15	SYN2 (ENSPANG00000024762) #14	PPARG (ENSPANG00000016461) #19	MKRN2OS (ENSPANG00000008481) #21	TSEN2 (ENSPANG00000013415) #20	MKRN2 (ENSPANG00000021307) #22	ENSPANG00000035680	RAF1 (ENSPANG00000008568) #23	TMEM40 (ENSPANG00000014208) #24	CAND2 (ENSPANG00000018464) #26	ENSPANG00000007693 ##27	IQSEC1 (ENSPANG00000006877) #28	NUP210 (ENSPANG00000006878) #29	HDAC11 (ENSPANG00000024163) #30	ENSPANG00000047403 #31	ENSPANG00000007694 #31	WNT7A (ENSPANG00000046909) #33	CHCHD4 (ENSPANG00000025946) #34	TMEM43 (ENSPANG00000012906) #35	XPC (ENSPANG00000004175) #36	LSM3 (ENSPANG00000009378) #37
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.a.a #27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.q.a.a #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615
Pig-tailed macaque	MODERN SPECIES	546	ATP2B2 (ENSMNEG00000040193)	SLC6A11 (ENSMNEG00000031997) #7	SLC6A1 (ENSMNEG00000031841) #8	ENSMNEG00000030516 ##34	HRH1 (ENSMNEG00000008240) #10	ATG7 (ENSMNEG00000028392) #11	VGLL4 (ENSMNEG00000039421) #12	TAMM41 (ENSMNEG00000040547) #13	ENSMNEG00000042157	ENSMNEG00000024024	SYN2 (ENSMNEG00000033226) #14	TIMP4 (ENSMNEG00000028992) #15	PPARG (ENSMNEG00000028217) #19	TSEN2 (ENSMNEG00000025898) #20	MKRN2OS (ENSMNEG00000034066) #21	MKRN2 (ENSMNEG00000031197) #22	RAF1 (ENSMNEG00000040519) #23	TMEM40 (ENSMNEG00000027829) #24	CAND2 (ENSMNEG00000044168) #26	RPL32 (ENSMNEG00000030893) #27	IQSEC1 (ENSMNEG00000042270) #28	ENSMNEG00000029455	NUP210 (ENSMNEG00000041495) #29	HDAC11 (ENSMNEG00000040546) #30	FBLN2 (ENSMNEG00000035537) #31	WNT7A (ENSMNEG00000037464) #33	ENSMNEG00000040402 #34	TMEM43 (ENSMNEG00000032802) #35	XPC (ENSMNEG00000038400) #36	ENSMNEG00000043632 #37	SLC6A6 (ENSMNEG00000040859)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.b.a.b.b.a.a.b.a.a	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a.e.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.r ##34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583
Rhesus	MODERN SPECIES	11	SEC13 (ENSMMUG00000019936)	ATP2B2 (ENSMMUG00000019938)	SLC6A11 (ENSMMUG00000005916) #7	SLC6A1 (ENSMMUG00000005917) #8	HRH1 (ENSMMUG00000056308) #10	ATG7 (ENSMMUG00000021804) #11	VGLL4 (ENSMMUG00000021806) #12	ENSMMUG00000062782	TAMM41 (ENSMMUG00000013372) #13	ENSMMUG00000055179	SYN2 (ENSMMUG00000001120) #14	TIMP4 (ENSMMUG00000001127) #15	PPARG (ENSMMUG00000007191) #19	TSEN2 (ENSMMUG00000007195) #20	MKRN2OS (ENSMMUG00000031993) #21	MKRN2 (ENSMMUG00000009536) #22	RAF1 (ENSMMUG00000007450) #23	TMEM40 (ENSMMUG00000010276) #24	CAND2 (ENSMMUG00000001339) #26	RPL32 (ENSMMUG00000001340) #27	IQSEC1 (ENSMMUG00000001342) #28	NUP210 (ENSMMUG00000015979) #29	ENSMMUG00000056487	HDAC11 (ENSMMUG00000001369) #30	FBLN2 (ENSMMUG00000017659) #31	WNT7A (ENSMMUG00000018445) #33	XPC (ENSMMUG00000023125) #36	TMEM43 (ENSMMUG00000023124) #35	SLC6A6 (ENSMMUG00000006340)	GRIP2 (ENSMMUG00000006342)	ENSMMUG00000062011
Crab-eating macaque	MODERN SPECIES	11	SEC13 (ENSMFAG00000037200)	ATP2B2 (ENSMFAG00000034151)	SLC6A11 (ENSMFAG00000034176) #7	SLC6A1 (ENSMFAG00000007438) #8	HRH1 (ENSMFAG00000030336) #10	ATG7 (ENSMFAG00000040779) #11	VGLL4 (ENSMFAG00000009745) #12	TAMM41 (ENSMFAG00000033931) #13	ENSMFAG00000059255	SYN2 (ENSMFAG00000041997) #14	ENSMFAG00000021078	TIMP4 (ENSMFAG00000052548) #15	PPARG (ENSMFAG00000034317) #19	TSEN2 (ENSMFAG00000038583) #20	MKRN2OS (ENSMFAG00000031892) #21	MKRN2 (ENSMFAG00000035845) #22	ENSMFAG00000051059	RAF1 (ENSMFAG00000038061) #23	TMEM40 (ENSMFAG00000039365) #24	CAND2 (ENSMFAG00000044298) #26	ENSMFAG00000045190 ##27	IQSEC1 (ENSMFAG00000043873) #28	NUP210 (ENSMFAG00000044461) #29	ENSMFAG00000058794	HDAC11 (ENSMFAG00000036363) #30	FBLN2 (ENSMFAG00000003835) #31	WNT7A (ENSMFAG00000044809) #33	ENSMFAG00000044351 ##34	TMEM43 (ENSMFAG00000047872) #35	XPC (ENSMFAG00000031847) #36	LSM3 (ENSMFAG00000063615) #37
Vervet Monkey	MODERN SPECIES	14	GHRL (ENSCSAG00000010031)	SEC13 (ENSCSAG00000010026)	ATP2B2 (ENSCSAG00000010018)	ENSCSAG00000010009	SLC6A11 (ENSCSAG00000009991) #7	SLC6A1 (ENSCSAG00000009912) #8	HRH1 (ENSCSAG00000018810) #10	ATG7 (ENSCSAG00000009887) #11	VGLL4 (ENSCSAG00000009873) #12	TAMM41 (ENSCSAG00000009866) #13	SYN2 (ENSCSAG00000009855) #14	TIMP4 (ENSCSAG00000009845) #15	PPARG (ENSCSAG00000009839) #19	TSEN2 (ENSCSAG00000009822) #20	MKRN2OS (ENSCSAG00000009764) #21	MKRN2 (ENSCSAG00000009754) #22	RAF1 (ENSCSAG00000009721) #23	TMEM40 (ENSCSAG00000009604) #24	CAND2 (ENSCSAG00000009557) #26	RPL32 (ENSCSAG00000009485) ##27	IQSEC1 (ENSCSAG00000009482) #28	NUP210 (ENSCSAG00000009474) #29	HDAC11 (ENSCSAG00000009462) #30	FBLN2 (ENSCSAG00000009449) #31	WNT7A (ENSCSAG00000009439) #33	CHCHD4 (ENSCSAG00000009431) #34	TMEM43 (ENSCSAG00000009426) #35	XPC (ENSCSAG00000009411) #36	SLC6A6 (ENSCSAG00000009391)	GRIP2 (ENSCSAG00000009353)	CCDC174 (ENSCSAG00000009294)
Rhinopithecus	ANCESTRAL SPECIES	113	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00910000148795	ENSGT00390000013132.q.b ##34	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00910000148924	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00390000016970.h	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273.r #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.bb #23
Black snub-nosed monkey	MODERN SPECIES	1833													PPARG (ENSRBIG00000042269) #19	TSEN2 (ENSRBIG00000033133) #20	MKRN2OS (ENSRBIG00000033018) #21	MKRN2 (ENSRBIG00000039128) #22	ENSRBIG00000029284 #23	ENSRBIG00000027349
Golden snub-nosed monkey	MODERN SPECIES	2016	SLC6A11 (ENSRROG00000031463) #7	SLC6A1 (ENSRROG00000040161) #8	ENSRROG00000044510 ##34	HRH1 (ENSRROG00000012382) #10	ATG7 (ENSRROG00000041008) #11	ENSRROG00000038335	VGLL4 (ENSRROG00000032842) #12	TAMM41 (ENSRROG00000034628) #13	ENSRROG00000042628	SYN2 (ENSRROG00000040768) #14	TIMP4 (ENSRROG00000043357) #15	PPARG (ENSRROG00000044807) #19	ENSRROG00000034587	TSEN2 (ENSRROG00000041156) #20	MKRN2OS (ENSRROG00000037999) #21	MKRN2 (ENSRROG00000033767) #22	ENSRROG00000041930 #23
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00940000153393.B.u.a	ENSGT00910000147252	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509.e #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000158890.q	ENSGT00940000153973.c.a.b.a.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.p #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000153393.B.u.a	ENSGT00910000147252	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509.e #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000158890.q	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.p #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583
Cebidae_a	ANCESTRAL SPECIES	47	ENSGT00940000153393.B.u.a	ENSGT00910000147252	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509.e #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000013132.p #34	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615
Capuchin	MODERN SPECIES	281	TATDN2 (ENSCCAG00000024974)	GHRL (ENSCCAG00000022227)	SEC13 (ENSCCAG00000026715)	ATP2B2 (ENSCCAG00000032907)	SLC6A11 (ENSCCAG00000030058) #7	SLC6A1 (ENSCCAG00000026677) #8	ATG7 (ENSCCAG00000035255) #11	VGLL4 (ENSCCAG00000032615) #12	TAMM41 (ENSCCAG00000025773) #13	TIMP4 (ENSCCAG00000035892) #15	SYN2 (ENSCCAG00000034848) #14	PPARG (ENSCCAG00000027364) #19	TSEN2 (ENSCCAG00000037851) #20	MKRN2OS (ENSCCAG00000031553) #21	ENSCCAG00000022711	MKRN2 (ENSCCAG00000019802) #22	RAF1 (ENSCCAG00000023070) #23	TMEM40 (ENSCCAG00000020743) #24	CAND2 (ENSCCAG00000032849) #26	RPL32 (ENSCCAG00000025373) ##27	IQSEC1 (ENSCCAG00000024388) #28
Bolivian squirrel monkey	MODERN SPECIES	62	GHRL (ENSSBOG00000005768)	ENSSBOG00000023709	ENSSBOG00000020409	ATP2B2 (ENSSBOG00000020057)	SLC6A11 (ENSSBOG00000029132) #7	SLC6A1 (ENSSBOG00000022090) #8	HRH1 (ENSSBOG00000015886) #10	ATG7 (ENSSBOG00000024304) #11	VGLL4 (ENSSBOG00000026167) #12	TAMM41 (ENSSBOG00000034374) #13	TIMP4 (ENSSBOG00000032293) #15	ENSSBOG00000030292 #14	PPARG (ENSSBOG00000005712) #19	TSEN2 (ENSSBOG00000035499) #20	MKRN2OS (ENSSBOG00000033896) #21	MKRN2 (ENSSBOG00000034434) #22	RAF1 (ENSSBOG00000015492) #23	ACAP2 (ENSSBOG00000029437)	XXYLT1 (ENSSBOG00000034641)	FAM43A (ENSSBOG00000018424)	LSG1 (ENSSBOG00000034938)	TMEM44 (ENSSBOG00000020794)	ATP13A3 (ENSSBOG00000005544)	LRRC15 (ENSSBOG00000031469)	CPN2 (ENSSBOG00000014283)	ENSSBOG00000033814	HES1 (ENSSBOG00000028215)	OPA1 (ENSSBOG00000021973)	ATP13A4 (ENSSBOG00000032487)	ATP13A5 (ENSSBOG00000030531)	PLAAT1 (ENSSBOG00000030423)
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	6	SLC6A1 (ENSCJAG00000016551) #8	ENSCJAG00000072589	ENSCJAG00000070697	ENSCJAG00000084863	HRH1 (ENSCJAG00000043961) #10	ATG7 (ENSCJAG00000016583) #11	ENSCJAG00000058577	VGLL4 (ENSCJAG00000016643) #12	SYN2 (ENSCJAG00000016647) #14	TIMP4 (ENSCJAG00000038791) #15	PPARG (ENSCJAG00000016687) #19	ENSCJAG00000086839	ENSCJAG00000075859	TSEN2 (ENSCJAG00000080511) #20	MKRN2OS (ENSCJAG00000040602) #21	ENSCJAG00000016733 #22	RAF1 (ENSCJAG00000016737) #23	TMEM40 (ENSCJAG00000016751) #24	CAND2 (ENSCJAG00000016770) #26	ENSCJAG00000061647	IQSEC1 (ENSCJAG00000016781) #28	NUP210 (ENSCJAG00000016795) #29	HDAC11 (ENSCJAG00000016844) #30	FBLN2 (ENSCJAG00000016873) #31	WNT7A (ENSCJAG00000040771) #33	TMEM43 (ENSCJAG00000016924) #35	ENSCJAG00000072125	ENSCJAG00000087072 #34	XPC (ENSCJAG00000016952) #36	ENSCJAG00000042664 #37	ENSCJAG00000079599
Marmoset	MODERN SPECIES	16	ENSCJAG00000073079	ENSCJAG00000062395	HACE1 (ENSCJAG00000001597)	LIN28B (ENSCJAG00000001671)	BVES (ENSCJAG00000001683)	POPDC3 (ENSCJAG00000001700)	ENSCJAG00000071190	PREP (ENSCJAG00000001710)	ENSCJAG00000074740	ENSCJAG00000085831	ATG5 (ENSCJAG00000006306)	ENSCJAG00000079207	PRDM1 (ENSCJAG00000006332)	ENSCJAG00000074624	CRYBG1 (ENSCJAG00000006246)	ENSCJAG00000079990 #22	RTN4IP1 (ENSCJAG00000006218)	QRSL1 (ENSCJAG00000006200)	ENSCJAG00000058620	ENSCJAG00000073856	MTRES1 (ENSCJAG00000046921)	BEND3 (ENSCJAG00000039628)	ENSCJAG00000080202	PDSS2 (ENSCJAG00000006153)	ENSCJAG00000076519	ENSCJAG00000084385	SOBP (ENSCJAG00000006119)	SCML4 (ENSCJAG00000006102)	SEC63 (ENSCJAG00000005998)	OSTM1 (ENSCJAG00000040617)	ENSCJAG00000070984
Mas night monkey	MODERN SPECIES	321	CRELD1 (ENSANAG00000026557)	ENSANAG00000021183	IL17RE (ENSANAG00000022892)	CIDEC (ENSANAG00000024285)	ENSANAG00000019292	HRH1 (ENSANAG00000031051) #10	ENSANAG00000032758 #11	ENSANAG00000012369	VGLL4 (ENSANAG00000038129) #12	TAMM41 (ENSANAG00000037740) #13	SYN2 (ENSANAG00000021892) #14	TIMP4 (ENSANAG00000032042) #15	PPARG (ENSANAG00000020115) #19	TSEN2 (ENSANAG00000026891) #20	MKRN2OS (ENSANAG00000026143) #21	MKRN2 (ENSANAG00000022646) #22	RAF1 (ENSANAG00000031934) #23	TMEM40 (ENSANAG00000036821) #24	CAND2 (ENSANAG00000020366) #26	ENSANAG00000020589 ##27	IQSEC1 (ENSANAG00000028368) #28	NUP210 (ENSANAG00000036448) #29	HDAC11 (ENSANAG00000035737) #30	FBLN2 (ENSANAG00000027135) #31	WNT7A (ENSANAG00000033071) #33	CHCHD4 (ENSANAG00000034814) #34	TMEM43 (ENSANAG00000036418) #35	XPC (ENSANAG00000021069) #36	LSM3 (ENSANAG00000034627) #37	SLC6A6 (ENSANAG00000025733)	GRIP2 (ENSANAG00000037475)
Tarsier	MODERN SPECIES	5029										PM20D2 (ENSTSYG00000027051)	GABRR1 (ENSTSYG00000033942)	PPARG (ENSTSYG00000006950) #19	TSEN2 (ENSTSYG00000010816) #20	MKRN2OS (ENSTSYG00000029616) #21	ENSTSYG00000030920	MKRN2 (ENSTSYG00000007429) #22	RAF1 (ENSTSYG00000007438) #23
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Lemuriformes	ANCESTRAL SPECIES	76	ENSGT00940000156915 #28	ENSGT00940000157312	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Mouse lemur	MODERN SPECIES	15	IQSEC1 (ENSMICG00000002633) #28	ACAD9 (ENSMICG00000007418)	ATP2B2 (ENSMICG00000002406)	SLC6A11 (ENSMICG00000033698) #7	SLC6A1 (ENSMICG00000003055) #8	ATG7 (ENSMICG00000016547) #11	ENSMICG00000035458	VGLL4 (ENSMICG00000016559) #12	TAMM41 (ENSMICG00000016586) #13	ENSMICG00000012731	SYN2 (ENSMICG00000003565) #14	TIMP4 (ENSMICG00000045817) #15	PPARG (ENSMICG00000016663) #19	TSEN2 (ENSMICG00000016672) #20	MKRN2OS (ENSMICG00000038087) #21	MKRN2 (ENSMICG00000012164) #22	RAF1 (ENSMICG00000012172) #23	ENSMICG00000033639	TMEM40 (ENSMICG00000003715) #24	CAND2 (ENSMICG00000041434) #26	ENSMICG00000034607 ##27	EFCAB12 (ENSMICG00000008010)	MBD4 (ENSMICG00000008022)	IFT122 (ENSMICG00000008033)	RHO (ENSMICG00000047910)	H1-8 (ENSMICG00000030377)	PLXND1 (ENSMICG00000008079)	ENSMICG00000028823	MSX2 (ENSMICG00000026941)	NSG2 (ENSMICG00000035993)	C5orf47 (ENSMICG00000047468)
Lemuriformes_a	ANCESTRAL SPECIES	162	ENSGT00940000156915 #28	ENSGT00940000157312	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Coquerels sifaka	MODERN SPECIES	614	ENSPCOG00000026952	IQSEC1 (ENSPCOG00000022781) #28	ACAD9 (ENSPCOG00000028509)	ENSPCOG00000027035	ATP2B2 (ENSPCOG00000022973)	SLC6A11 (ENSPCOG00000012550) #7	SLC6A1 (ENSPCOG00000027376) #8	ATG7 (ENSPCOG00000021597) #11	VGLL4 (ENSPCOG00000016845) #12	TAMM41 (ENSPCOG00000021554) #13	TIMP4 (ENSPCOG00000025232) #15	SYN2 (ENSPCOG00000020181) #14	PPARG (ENSPCOG00000017510) #19	TSEN2 (ENSPCOG00000019328) #20	MKRN2OS (ENSPCOG00000027519) #21	MKRN2 (ENSPCOG00000013481) #22	RAF1 (ENSPCOG00000013436) #23	ENSPCOG00000024646	TMEM40 (ENSPCOG00000027785) #24	CAND2 (ENSPCOG00000020368) #26	ENSPCOG00000026378 ##27	EFCAB12 (ENSPCOG00000020532)	ENSPCOG00000018583	IFT122 (ENSPCOG00000023934)	RHO (ENSPCOG00000024236)	H1-8 (ENSPCOG00000024479)	PLXND1 (ENSPCOG00000027312)
Greater bamboo lemur	MODERN SPECIES	130					SLC6A11 (ENSPSMG00000025382) #7	SLC6A1 (ENSPSMG00000025445) #8	HRH1 (ENSPSMG00000000102) #10	ATG7 (ENSPSMG00000000247) #11	VGLL4 (ENSPSMG00000000320) #12	TAMM41 (ENSPSMG00000000346) #13	SYN2 (ENSPSMG00000000398) #14	TIMP4 (ENSPSMG00000000419) #15	PPARG (ENSPSMG00000000463) #19	TSEN2 (ENSPSMG00000000537) #20	MKRN2OS (ENSPSMG00000000584) #21	MKRN2 (ENSPSMG00000000636) #22	RAF1 (ENSPSMG00000000725) #23	TMEM40 (ENSPSMG00000000837) #24	ENSPSMG00000000888	CAND2 (ENSPSMG00000000926) #26	ENSPSMG00000000953 ##27	EFCAB12 (ENSPSMG00000000969)	MBD4 (ENSPSMG00000001016)	IFT122 (ENSPSMG00000001543)	RHO (ENSPSMG00000002457)	H1-8 (ENSPSMG00000002466)	ENSPSMG00000002470
Bushbaby	MODERN SPECIES	216					HRH1 (ENSOGAG00000016172) #10	ATG7 (ENSOGAG00000016175) #11	VGLL4 (ENSOGAG00000016184) #12	TAMM41 (ENSOGAG00000030657) #13	ENSOGAG00000031076	ENSOGAG00000006595	TIMP4 (ENSOGAG00000016704) #15	SYN2 (ENSOGAG00000016700) #14	PPARG (ENSOGAG00000002971) #19	ENSOGAG00000002976 #20	MKRN2OS (ENSOGAG00000031425) #21	MKRN2 (ENSOGAG00000003255) #22	RAF1 (ENSOGAG00000003256) #23	TMEM40 (ENSOGAG00000003261) #24	CAND2 (ENSOGAG00000028928) #26	RPL32 (ENSOGAG00000028498) #27	ENSOGAG00000010234	MBD4 (ENSOGAG00000010236)	IFT122 (ENSOGAG00000010245)	RHO (ENSOGAG00000010259)	PLXND1 (ENSOGAG00000010266)	ENSOGAG00000032612	TMCC1 (ENSOGAG00000010283)	ENSOGAG00000031381	TRH (ENSOGAG00000017199)	RBSN (ENSOGAG00000014042)	MRPS25 (ENSOGAG00000014041)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Tree shrew	MODERN SPECIES	2688															TSEN2 (ENSTBEG00000011740) #20	ENSTBEG00000012118 #22	RAF1 (ENSTBEG00000012253) #23
Glires	ANCESTRAL SPECIES	2	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Lagomorpha	ANCESTRAL SPECIES	105						ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Rabbit	MODERN SPECIES	20	LARS2 (ENSOCUG00000001964)	ENSOCUG00000024922	LIMD1 (ENSOCUG00000001984)	SACM1L (ENSOCUG00000026080)	SLC6A20 (ENSOCUG00000004216)	LZTFL1 (ENSOCUG00000010140)	SLC6A11 (ENSOCUG00000001627) #7	ENSOCUG00000025657 #8	ATG7 (ENSOCUG00000001908) #11	VGLL4 (ENSOCUG00000001911) #12	TIMP4 (ENSOCUG00000015952) #15	ENSOCUG00000015932 #14	PPARG (ENSOCUG00000013194) #19	TSEN2 (ENSOCUG00000013203) #20	MKRN2OS (ENSOCUG00000033126) #21	MKRN2 (ENSOCUG00000014171) #22	RAF1 (ENSOCUG00000014175) #23	ENSOCUG00000031173 #24	CAND2 (ENSOCUG00000009266) #26	ENSOCUG00000023407 ##27	ENSOCUG00000012999	MBD4 (ENSOCUG00000013006)	IFT122 (ENSOCUG00000013015)	RHO (ENSOCUG00000013036)	ENSOCUG00000029379	PLXND1 (ENSOCUG00000013049)	TMCC1 (ENSOCUG00000013071)	TRH (ENSOCUG00000006337)	RBSN (ENSOCUG00000006988)	MRPS25 (ENSOCUG00000006984)	NR2C2 (ENSOCUG00000006975)
Pika	MODERN SPECIES	1896											TAMM41 (ENSOPRG00000003357) #13	SYN2 (ENSOPRG00000003375) #14	TIMP4 (ENSOPRG00000003424) #15	PPARG (ENSOPRG00000003439) #19	TSEN2 (ENSOPRG00000003456) #20	MKRN2 (ENSOPRG00000003501) #22	RAF1 (ENSOPRG00000003522) #23	ENSOPRG00000003562 #26
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Hystricomorpha	ANCESTRAL SPECIES	48															ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00390000016951	ENSGT00940000160900	ENSGT00940000155189	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000155180.b	ENSGT00940000156857	ENSGT00440000033504.B	ENSGT00940000155867	ENSGT00940000161249	ENSGT00940000158225	ENSGT00950000182956.b.b.a.b	ENSGT00940000158155	ENSGT00390000003219	ENSGT00940000158804	ENSGT00390000006066	ENSGT00390000005378	ENSGT00940000157200	ENSGT00940000157312.h	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958
Guinea pig	MODERN SPECIES	109	APBB1IP (ENSCPOG00000004077)	GAD2 (ENSCPOG00000013724)	ENSCPOG00000039199	ENSCPOG00000013721	ENSCPOG00000034310	GPR158 (ENSCPOG00000001565)	ENSCPOG00000000291	ENKUR (ENSCPOG00000009590)	ARHGAP21 (ENSCPOG00000004505)	ENSCPOG00000031884	ENSCPOG00000005850	ITFG2 (ENSCPOG00000021230)	FKBP4 (ENSCPOG00000002453)	ENSCPOG00000009944	MKRN2OS (ENSCPOG00000032819) #21	MKRN2 (ENSCPOG00000001208) #22	RAF1 (ENSCPOG00000001210) #23	TMEM40 (ENSCPOG00000025632) #24	CAND2 (ENSCPOG00000023286) #26	RPL32 (ENSCPOG00000019967) ##27	ENSCPOG00000004970	IFT122 (ENSCPOG00000004975)	RHO (ENSCPOG00000004984)	PLXND1 (ENSCPOG00000004989)	TMCC1 (ENSCPOG00000009299)	RBSN (ENSCPOG00000003200)	MRPS25 (ENSCPOG00000020398)	NR2C2 (ENSCPOG00000001512)	FGD5 (ENSCPOG00000013157)	C3orf20 (ENSCPOG00000006783)	CCDC174 (ENSCPOG00000039402)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000155180.b	ENSGT00940000156857	ENSGT00440000033504.B	ENSGT00940000155867	ENSGT00940000161249	ENSGT00940000158225	ENSGT00950000182956.b.b.a.b	ENSGT00940000158155	ENSGT00390000003219	ENSGT00940000158804	ENSGT00390000006066	ENSGT00390000005378	ENSGT00940000157200	ENSGT00940000157312.h	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958
Degu	MODERN SPECIES	274	ENSODEG00000018801	HMCES (ENSODEG00000002476)	ENSODEG00000002503	TSEN2 (ENSODEG00000002629) #20	PPARG (ENSODEG00000002659) #19	ENSODEG00000001988 #14	TIMP4 (ENSODEG00000002023) #15	TAMM41 (ENSODEG00000002076) #13	ENSODEG00000018794	ENSODEG00000002124 #12	ATG7 (ENSODEG00000002299) #11	SLC6A1 (ENSODEG00000002644) #8	SLC6A11 (ENSODEG00000002665) #7	ENSODEG00000002676	MKRN2OS (ENSODEG00000002688) #21	MKRN2 (ENSODEG00000002702) #22	RAF1 (ENSODEG00000002734) #23	TMEM40 (ENSODEG00000002755) #24	CAND2 (ENSODEG00000002821) #26	ENSODEG00000002891 #27	ENSODEG00000002902	IFT122 (ENSODEG00000003013)	RHO (ENSODEG00000003304)	PLXND1 (ENSODEG00000003347)	TMCC1 (ENSODEG00000001710)	ENSODEG00000001772	ENSODEG00000001849	ENSODEG00000001861	NR2C2 (ENSODEG00000001892)	MRPS25 (ENSODEG00000001966)	RBSN (ENSODEG00000001991)
Long-tailed chinchilla	MODERN SPECIES	136	ACBD7 (ENSCLAG00000010962)	RPP38 (ENSCLAG00000010194)	NMT2 (ENSCLAG00000008204)	FAM171A1 (ENSCLAG00000009809)	ENSCLAG00000009091	ENSCLAG00000008194	TEAD4 (ENSCLAG00000012070)	TULP3 (ENSCLAG00000017345)	RHNO1 (ENSCLAG00000017326)	FOXM1 (ENSCLAG00000014183)	TEX52 (ENSCLAG00000013429)	ITFG2 (ENSCLAG00000016639)	FKBP4 (ENSCLAG00000013510)	ENSCLAG00000011764	MKRN2OS (ENSCLAG00000009109) #21	MKRN2 (ENSCLAG00000008755) #22	RAF1 (ENSCLAG00000010316) #23	TMEM40 (ENSCLAG00000009668) #24	CAND2 (ENSCLAG00000007541) #26	ENSCLAG00000007426 ##27	MBD4 (ENSCLAG00000008974)	IFT122 (ENSCLAG00000006170)	RHO (ENSCLAG00000006233)	PLXND1 (ENSCLAG00000012627)	TMCC1 (ENSCLAG00000014727)	RBSN (ENSCLAG00000011613)	MRPS25 (ENSCLAG00000008381)	NR2C2 (ENSCLAG00000011082)	FGD5 (ENSCLAG00000011953)	C3orf20 (ENSCLAG00000013841)	CCDC174 (ENSCLAG00000011014)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000000350 #7	ENSHGLG00000045274 #8	HRH1 (ENSHGLG00000044045) #10	ENSHGLG00000002369 #12	ENSHGLG00000000122	ENSHGLG00000000094	ENSHGLG00000037886	DNAJB8 (ENSHGLG00000046802)	GATA2 (ENSHGLG00000000985)	ENSHGLG00000000920	ENSHGLG00000039046	ENSHGLG00000019586	ENSHGLG00000032284	ENSHGLG00000045316	ENSHGLG00000017856 #21	ENSHGLG00000018194 #22	ENSHGLG00000018214 #23	ENSHGLG00000037560	ENSHGLG00000032617	ENSHGLG00000039038	ENSHGLG00000033042	ENSHGLG00000015498 #24	ENSHGLG00000015580 #26	ENSHGLG00000040769 ##27	ENSHGLG00000015777	MBD4 (ENSHGLG00000009034)	IFT122 (ENSHGLG00000009113)	RHO (ENSHGLG00000006668)	ENSHGLG00000040416	ENSHGLG00000040044	ENSHGLG00000000240
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Marmotini	ANCESTRAL SPECIES	49	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00960000190360	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Marmotini_b	ANCESTRAL SPECIES	62	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00960000190360	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Arctic ground squirrel	MODERN SPECIES	23	GHRL (ENSUPAG00010022997)	SEC13 (ENSUPAG00010022998)	ATP2B2 (ENSUPAG00010022999)	SLC6A11 (ENSUPAG00010023004) #7	SLC6A1 (ENSUPAG00010023006) #8	ENSUPAG00010023009	HRH1 (ENSUPAG00010023010) #10	ATG7 (ENSUPAG00010023011) #11	VGLL4 (ENSUPAG00010023024) #12	ENSUPAG00010023027 #13	SYN2 (ENSUPAG00010023028) #14	TIMP4 (ENSUPAG00010023029) #15	PPARG (ENSUPAG00010023031) #19	TSEN2 (ENSUPAG00010023034) #20	MKRN2OS (ENSUPAG00010023035) #21	MKRN2 (ENSUPAG00010023036) #22	RAF1 (ENSUPAG00010023038) #23	TMEM40 (ENSUPAG00010023040) #24	CAND2 (ENSUPAG00010023044) #26	ENSUPAG00010023046 ##27	EFCAB12 (ENSUPAG00010023049)	ENSUPAG00010023052	ENSUPAG00010023053	IFT122 (ENSUPAG00010023058)	RHO (ENSUPAG00010023066)	H1-8 (ENSUPAG00010023069)	PLXND1 (ENSUPAG00010000023)	TMCC1 (ENSUPAG00010000491)	TRH (ENSUPAG00010000545)	RBSN (ENSUPAG00010000555)	MRPS25 (ENSUPAG00010000567)
Squirrel	MODERN SPECIES	202	TATDN2 (ENSSTOG00000013999)	GHRL (ENSSTOG00000022095)	SEC13 (ENSSTOG00000014017)	ATP2B2 (ENSSTOG00000014026)	SLC6A11 (ENSSTOG00000028999) #7	SLC6A1 (ENSSTOG00000007598) #8	HRH1 (ENSSTOG00000015286) #10	ATG7 (ENSSTOG00000015288) #11	VGLL4 (ENSSTOG00000025247) #12	ENSSTOG00000028589	TIMP4 (ENSSTOG00000034531) #15	SYN2 (ENSSTOG00000011519) #14	PPARG (ENSSTOG00000012778) #19	TSEN2 (ENSSTOG00000000538) #20	MKRN2OS (ENSSTOG00000031428) #21	MKRN2 (ENSSTOG00000010520) #22	RAF1 (ENSSTOG00000025146) #23	CAND2 (ENSSTOG00000023136) #26	ENSSTOG00000026505 ##27	MBD4 (ENSSTOG00000020663)	IFT122 (ENSSTOG00000004353)	RHO (ENSSTOG00000028352)	PLXND1 (ENSSTOG00000024621)	TMCC1 (ENSSTOG00000019869)	TRH (ENSSTOG00000026247)	RBSN (ENSSTOG00000022986)	MRPS25 (ENSSTOG00000030962)	NR2C2 (ENSSTOG00000005250)	FGD5 (ENSSTOG00000005202)	C3orf20 (ENSSTOG00000002907)	CCDC174 (ENSSTOG00000027414)
Alpin marmot	MODERN SPECIES	40	ATP2B2 (ENSMMMG00000009587)	SLC6A11 (ENSMMMG00000009836) #7	SLC6A1 (ENSMMMG00000009856) #8	ENSMMMG00000009895	HRH1 (ENSMMMG00000009921) #10	ENSMMMG00000009925	ATG7 (ENSMMMG00000009966) #11	VGLL4 (ENSMMMG00000010304) #12	TAMM41 (ENSMMMG00000010322) #13	SYN2 (ENSMMMG00000010440) #14	ENSMMMG00000010687 #15	PPARG (ENSMMMG00000010840) #19	ENSMMMG00000010899 #20	ENSMMMG00000010907 #20	MKRN2OS (ENSMMMG00000010915) #21	MKRN2 (ENSMMMG00000010927) #22	ENSMMMG00000010950	RAF1 (ENSMMMG00000010957) #23	ENSMMMG00000010993 #26	ENSMMMG00000010997 ##27	EFCAB12 (ENSMMMG00000011023)	MBD4 (ENSMMMG00000011043)	IFT122 (ENSMMMG00000011068)	RHO (ENSMMMG00000011272)	ENSMMMG00000011299	ENSMMMG00000011319	TMCC1 (ENSMMMG00000011365)	TRH (ENSMMMG00000011424)	RBSN (ENSMMMG00000011435)	MRPS25 (ENSMMMG00000011452)	NR2C2 (ENSMMMG00000011464)
Eurasian red squirrel	MODERN SPECIES	10	GHRL (ENSSVLG00005023970)	SEC13 (ENSSVLG00005023877)	ATP2B2 (ENSSVLG00005022802)	SLC6A11 (ENSSVLG00005022396) #7	SLC6A1 (ENSSVLG00005021844) #8	HRH1 (ENSSVLG00005021749) #10	ATG7 (ENSSVLG00005021683) #11	VGLL4 (ENSSVLG00005021566) #12	ENSSVLG00005021494	TAMM41 (ENSSVLG00005021448) #13	TIMP4 (ENSSVLG00005021374) #15	SYN2 (ENSSVLG00005021130) #14	PPARG (ENSSVLG00005020780) #19	TSEN2 (ENSSVLG00005020543) #20	MKRN2OS (ENSSVLG00005020454) #21	MKRN2 (ENSSVLG00005020340) #22	ENSSVLG00005019978 #23	TMEM40 (ENSSVLG00005019760) #24	CAND2 (ENSSVLG00005019570) #26	ENSSVLG00005019450 #27	EFCAB12 (ENSSVLG00005019404)	MBD4 (ENSSVLG00005019308)	IFT122 (ENSSVLG00005018941)	RHO (ENSSVLG00005018827)	ENSSVLG00005018771	PLXND1 (ENSSVLG00005018384)	TMCC1 (ENSSVLG00005018250)	ENSSVLG00005018231	TRH (ENSSVLG00005018181)	RBSN (ENSSVLG00005018031)	MRPS25 (ENSSVLG00005017966)
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Muroidea	ANCESTRAL SPECIES	37	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716	ENSGT00940000158282	ENSGT00940000156111
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716	ENSGT00940000158282
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716	ENSGT00940000158282	ENSGT00940000156111
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	144	ENSCGRG00001017251	Ghrl (ENSCGRG00001018358)	Sec13 (ENSCGRG00001019327)	Atp2b2 (ENSCGRG00001021784)	Slc6a11 (ENSCGRG00001000475) #7	Slc6a1 (ENSCGRG00001006244) #8	Hrh1 (ENSCGRG00001015773) #10	Atg7 (ENSCGRG00001017070) #11	Vgll4 (ENSCGRG00001001705) #12	Tamm41 (ENSCGRG00001003506) #13	Syn2 (ENSCGRG00001007902) #14	Timp4 (ENSCGRG00001010158) #15	Pparg (ENSCGRG00001013849) #19	Tsen2 (ENSCGRG00001017681) #20	Mkrn2os (ENSCGRG00001018483) #21	ENSCGRG00001019373 #22	Raf1 (ENSCGRG00001020096) #23	Tmem40 (ENSCGRG00001022432) #24	Cand2 (ENSCGRG00001024197) #26	ENSCGRG00001000039 ##27	Efcab12 (ENSCGRG00001000767)	Mbd4 (ENSCGRG00001003507)	Ift122 (ENSCGRG00001012761)	Rho (ENSCGRG00001018161)	H1f8 (ENSCGRG00001024504)	Plxnd1 (ENSCGRG00001007901)	Tmcc1 (ENSCGRG00001016263)	Washc2 (ENSCGRG00001019572)	Zfand4 (ENSCGRG00001023303)	Marchf8 (ENSCGRG00001003616)	Alox5 (ENSCGRG00001010128)
Chinese hamster chok1gshd	MODERN SPECIES	401	Kcnv2 (ENSCGRG00001018140)	Pum3 (ENSCGRG00001016402)	Rfx3 (ENSCGRG00001021745)	Glis3 (ENSCGRG00001014233)	Slc1a1 (ENSCGRG00001022336)	ENSCGRG00001023585	Spata6l (ENSCGRG00001002881)	Plpp6 (ENSCGRG00001012981)	Cdc37l1 (ENSCGRG00001000264)	AK3 (ENSCGRG00001007296)	Rcl1 (ENSCGRG00001013748)	Jak2 (ENSCGRG00001015840)	Insl6 (ENSCGRG00001020673)	Plgrkt (ENSCGRG00001023695)	Cd274 (ENSCGRG00001024294)	ENSCGRG00001013276 #22	Pdcd1lg2 (ENSCGRG00001015183)	Ric1 (ENSCGRG00001016728)	Ermp1 (ENSCGRG00001021468)	Mlana (ENSCGRG00001024579)	9930021J03Rik (ENSCGRG00001008137)	Ranbp6 (ENSCGRG00001012447)	Il33 (ENSCGRG00001014000)	Trpd52l3 (ENSCGRG00001011832)	Uhrf2 (ENSCGRG00001019677)	Gldc (ENSCGRG00001023952)	Mbl2 (ENSCGRG00001015670)	Dkk1 (ENSCGRG00001016431)	Prkg1 (ENSCGRG00001023225)	Cstf2t (ENSCGRG00001003222)	A1cf (ENSCGRG00001017413)
Golden Hamster	MODERN SPECIES	622	Ghrl (ENSMAUG00000021031)	Sec13 (ENSMAUG00000012999)	Atp2b2 (ENSMAUG00000009448)	Slc6a11 (ENSMAUG00000008311) #7	Slc6a1 (ENSMAUG00000021551) #8	Hrh1 (ENSMAUG00000009874) #10	Atg7 (ENSMAUG00000003276) #11	Vgll4 (ENSMAUG00000011159) #12	Tamm41 (ENSMAUG00000017519) #13	ENSMAUG00000013097	Timp4 (ENSMAUG00000018049) #15	ENSMAUG00000020153 #14	ENSMAUG00000012323 #19	ENSMAUG00000013859 #20	Mkrn2os (ENSMAUG00000010492) #21	Mkrn2 (ENSMAUG00000014200) #22	Raf1 (ENSMAUG00000015447) #23	Tmem40 (ENSMAUG00000015454) #24	Cand2 (ENSMAUG00000005693) #26	ENSMAUG00000020260	Efcab12 (ENSMAUG00000010638)	ENSMAUG00000014245	Ift122 (ENSMAUG00000005778)	Rho (ENSMAUG00000002081)	H1f8 (ENSMAUG00000011359)	Plxnd1 (ENSMAUG00000021112)	ENSMAUG00000021669	Washc2 (ENSMAUG00000020725)	ENSMAUG00000008109	ENSMAUG00000021879	Alox5 (ENSMAUG00000018983)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716	ENSGT00940000158282	ENSGT00940000156111
Northern American deer mouse	MODERN SPECIES	16	Tatdn2 (ENSPEMG00000000467)	Ghrl (ENSPEMG00000001433)	Sec13 (ENSPEMG00000009433)	Atp2b2 (ENSPEMG00000000259)	Slc6a11 (ENSPEMG00000020194) #7	Slc6a1 (ENSPEMG00000011702) #8	Hrh1 (ENSPEMG00000028414) #10	Atg7 (ENSPEMG00000010473) #11	Vgll4 (ENSPEMG00000026845) #12	Tamm41 (ENSPEMG00000017033) #13	Syn2 (ENSPEMG00000016120) #14	Timp4 (ENSPEMG00000026166) #15	Pparg (ENSPEMG00000013545) #19	Tsen2 (ENSPEMG00000013175) #20	Mkrn2os (ENSPEMG00000012076) #21	Mkrn2 (ENSPEMG00000002776) #22	Raf1 (ENSPEMG00000012728) #23	Tmem40 (ENSPEMG00000002944) #24	ENSPEMG00000029699 ##26	ENSPEMG00000012965 ##27	Efcab12 (ENSPEMG00000012553)	Mbd4 (ENSPEMG00000006226)	Ift122 (ENSPEMG00000017389)	Rho (ENSPEMG00000008463)	H1f8 (ENSPEMG00000011381)	Plxnd1 (ENSPEMG00000008271)	ENSPEMG00000024601	Tmcc1 (ENSPEMG00000000449)	Washc2 (ENSPEMG00000017284)	Zfand4 (ENSPEMG00000008943)	Marchf8 (ENSPEMG00000015311)
Prairie vole	MODERN SPECIES	84	Sec13 (ENSMOCG00000020249)	Atp2b2 (ENSMOCG00000022399)	Slc6a11 (ENSMOCG00000010284) #7	Slc6a1 (ENSMOCG00000011689) #8	Hrh1 (ENSMOCG00000009133) #10	ENSMOCG00000016658	Atg7 (ENSMOCG00000009400) #11	Vgll4 (ENSMOCG00000012297) #12	Tamm41 (ENSMOCG00000020960) #13	Syn2 (ENSMOCG00000000368) #14	Timp4 (ENSMOCG00000013297) #15	ENSMOCG00000013854	Pparg (ENSMOCG00000017202) #19	Tsen2 (ENSMOCG00000020824) #20	Mkrn2os (ENSMOCG00000010265) #21	Mkrn2 (ENSMOCG00000015472) #22	Raf1 (ENSMOCG00000012403) #23	Tmem40 (ENSMOCG00000021932) #24	Cand2 (ENSMOCG00000012580) #26	ENSMOCG00000015206 ##27	Efcab12 (ENSMOCG00000020496)	ENSMOCG00000019929	ENSMOCG00000002466	Ift122 (ENSMOCG00000014549)	Rho (ENSMOCG00000022070)	H1f8 (ENSMOCG00000005594)	Plxnd1 (ENSMOCG00000014026)	Tmcc1 (ENSMOCG00000009713)	Washc2 (ENSMOCG00000018011)	ENSMOCG00000018066	ENSMOCG00000002394
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716	ENSGT00940000158282	ENSGT00940000156111
Mus	ANCESTRAL SPECIES	12	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716	ENSGT00940000158282	ENSGT00940000156111
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716.g	ENSGT00940000155716.h	ENSGT00940000158282
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716.g	ENSGT00940000155716.h
Mouse	MODERN SPECIES	15	ENSMUSG00000121578	Ghrl (ENSMUSG00000064177)	Sec13 (ENSMUSG00000030298)	Atp2b2 (ENSMUSG00000030302)	Slc6a11 (ENSMUSG00000030307) #7	Slc6a1 (ENSMUSG00000030310) #8	Hrh1 (ENSMUSG00000053004) #10	Atg7 (ENSMUSG00000030314) #11	Vgll4 (ENSMUSG00000030315) #12	Tamm41 (ENSMUSG00000030316) #13	Syn2 (ENSMUSG00000009394) #14	Timp4 (ENSMUSG00000030317) #15	Pparg (ENSMUSG00000000440) #19	Tsen2 (ENSMUSG00000042389) #20	Mkrn2os (ENSMUSG00000068011) #21	Mkrn2 (ENSMUSG00000000439) #22	Raf1 (ENSMUSG00000000441) #23	Tmem40 (ENSMUSG00000059900) #24	Cand2 (ENSMUSG00000030319) #26	Rpl32 (ENSMUSG00000057841) ##27	Efcab12 (ENSMUSG00000030321)	Mbd4 (ENSMUSG00000030322)	Ift122 (ENSMUSG00000030323)	Rho (ENSMUSG00000030324)	H1f8 (ENSMUSG00000042279)	Plxnd1 (ENSMUSG00000030123)	Tmcc1 (ENSMUSG00000030126)	Washc2 (ENSMUSG00000024104)	Zfand4 (ENSMUSG00000042213)	Marchf8 (ENSMUSG00000025702)	Alox5 (ENSMUSG00000025701)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a	ENSGT00940000155716.g	ENSGT00940000155716.h	ENSGT00940000158282
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3022						Atg7 (ENSMSIG00000031927) #11	ENSMSIG00000031929	ENSMSIG00000031930 #12	ENSMSIG00000031931 #13	Syn2 (ENSMSIG00000031932) #14	ENSMSIG00000031933	Timp4 (ENSMSIG00000031934) #15	Pparg (ENSMSIG00000031935) #19	Tsen2 (ENSMSIG00000031936) #20	Mkrn2os (ENSMSIG00000031937) #21	ENSMSIG00000031938 #22	Raf1 (ENSMSIG00000000188) #23	Tmem40 (ENSMSIG00000000359) #24	Cand2 (ENSMSIG00000000651) #26	Rpl32 (ENSMSIG00000000692) #27	Efcab12 (ENSMSIG00000000741)	Mbd4 (ENSMSIG00000000793)	Ift122 (ENSMSIG00000000881)	Rho (ENSMSIG00000001309)	ENSMSIG00000001359	H1f8 (ENSMSIG00000001367)	ENSMSIG00000001422	Tmcc1 (ENSMSIG00000001659)	ENSMSIG00000001776	Washc2 (ENSMSIG00000001796)	Zfand4 (ENSMSIG00000001904)
Steppe mouse	MODERN SPECIES	2895						ENSMSIG00000001198	Soga3 (ENSMSIG00000001173)	9330159F19Rik (ENSMSIG00000001137)	ENSMSIG00000001121	Rnf146 (ENSMSIG00000001088)	Rspo3 (ENSMSIG00000001044)	ENSMSIG00000001036	ENSMSIG00000001019	Cenpw (ENSMSIG00000000994)	ENSMSIG00000000980	ENSMSIG00000000946 #22	Trmt11 (ENSMSIG00000000873)
spretus	MODERN SPECIES	15	Ghrl (MGP_SPRETEiJ_G0029767)	Sec13 (MGP_SPRETEiJ_G0029768)	Atp2b2 (MGP_SPRETEiJ_G0029769)	Slc6a11 (MGP_SPRETEiJ_G0029770) #7	Slc6a1 (MGP_SPRETEiJ_G0029771) #8	Hrh1 (MGP_SPRETEiJ_G0029772) #10	Atg7 (MGP_SPRETEiJ_G0029773) #11	Vgll4 (MGP_SPRETEiJ_G0029774) #12	Tamm41 (MGP_SPRETEiJ_G0029775) #13	Syn2 (MGP_SPRETEiJ_G0029776) #14	MGP_SPRETEiJ_G0029777	Timp4 (MGP_SPRETEiJ_G0029778) #15	Pparg (MGP_SPRETEiJ_G0029779) #19	Tsen2 (MGP_SPRETEiJ_G0029780) #20	Mkrn2os (MGP_SPRETEiJ_G0029781) #21	Mkrn2 (MGP_SPRETEiJ_G0029782) #22	Raf1 (MGP_SPRETEiJ_G0029783) #23	Tmem40 (MGP_SPRETEiJ_G0029784) #24	Cand2 (MGP_SPRETEiJ_G0029785) #26	MGP_SPRETEiJ_G0029786 ##27	Efcab12 (MGP_SPRETEiJ_G0029787)	Mbd4 (MGP_SPRETEiJ_G0029788)	Ift122 (MGP_SPRETEiJ_G0029789)	Rho (MGP_SPRETEiJ_G0029790)	H1f8 (MGP_SPRETEiJ_G0029791)	Plxnd1 (MGP_SPRETEiJ_G0029792)	MGP_SPRETEiJ_G0029793	Washc2 (MGP_SPRETEiJ_G0029794)	Zfand4 (MGP_SPRETEiJ_G0029795)	MGP_SPRETEiJ_G0029796	Marchf8 (MGP_SPRETEiJ_G0029797)
Ryukyu mouse	MODERN SPECIES	15	Ghrl (MGP_CAROLIEiJ_G0028739)	Sec13 (MGP_CAROLIEiJ_G0028740)	Atp2b2 (MGP_CAROLIEiJ_G0028741)	Slc6a11 (MGP_CAROLIEiJ_G0028742) #7	Slc6a1 (MGP_CAROLIEiJ_G0028743) #8	Hrh1 (MGP_CAROLIEiJ_G0028744) #10	Atg7 (MGP_CAROLIEiJ_G0028745) #11	Vgll4 (MGP_CAROLIEiJ_G0028746) #12	Tamm41 (MGP_CAROLIEiJ_G0028747) #13	Syn2 (MGP_CAROLIEiJ_G0028748) #14	MGP_CAROLIEiJ_G0028749	Timp4 (MGP_CAROLIEiJ_G0028750) #15	Pparg (MGP_CAROLIEiJ_G0028751) #19	Tsen2 (MGP_CAROLIEiJ_G0028752) #20	Mkrn2os (MGP_CAROLIEiJ_G0028753) #21	Mkrn2 (MGP_CAROLIEiJ_G0028754) #22	Raf1 (MGP_CAROLIEiJ_G0028755) #23	MGP_CAROLIEiJ_G0028756 #24	Cand2 (MGP_CAROLIEiJ_G0028757) #26	MGP_CAROLIEiJ_G0028758 ##27	Efcab12 (MGP_CAROLIEiJ_G0028759)	Mbd4 (MGP_CAROLIEiJ_G0028760)	Ift122 (MGP_CAROLIEiJ_G0028761)	Rho (MGP_CAROLIEiJ_G0028762)	H1f8 (MGP_CAROLIEiJ_G0028763)	Plxnd1 (MGP_CAROLIEiJ_G0028764)	Tmcc1 (MGP_CAROLIEiJ_G0028765)	Washc2 (MGP_CAROLIEiJ_G0028766)	Zfand4 (MGP_CAROLIEiJ_G0028767)	MGP_CAROLIEiJ_G0028768	Marchf8 (MGP_CAROLIEiJ_G0028769)
Shrew mouse	MODERN SPECIES	11	Ghrl (MGP_PahariEiJ_G0022490)	Sec13 (MGP_PahariEiJ_G0022491)	Atp2b2 (MGP_PahariEiJ_G0022492)	Slc6a11 (MGP_PahariEiJ_G0022493) #7	Slc6a1 (MGP_PahariEiJ_G0022494) #8	Hrh1 (MGP_PahariEiJ_G0022495) #10	Atg7 (MGP_PahariEiJ_G0022496) #11	Vgll4 (MGP_PahariEiJ_G0022497) #12	Tamm41 (MGP_PahariEiJ_G0022498) #13	Syn2 (MGP_PahariEiJ_G0022499) #14	MGP_PahariEiJ_G0022500	Timp4 (MGP_PahariEiJ_G0022501) #15	Pparg (MGP_PahariEiJ_G0022502) #19	Tsen2 (MGP_PahariEiJ_G0022503) #20	Mkrn2os (MGP_PahariEiJ_G0022504) #21	Mkrn2 (MGP_PahariEiJ_G0022505) #22	Raf1 (MGP_PahariEiJ_G0022506) #23	Tmem40 (MGP_PahariEiJ_G0022507) #24	Cand2 (MGP_PahariEiJ_G0022508) #26	MGP_PahariEiJ_G0022509 ##27	Efcab12 (MGP_PahariEiJ_G0022510)	MGP_PahariEiJ_G0022511	Ift122 (MGP_PahariEiJ_G0022512)	Rho (MGP_PahariEiJ_G0022513)	H1f8 (MGP_PahariEiJ_G0022514)	Plxnd1 (MGP_PahariEiJ_G0022515)	Tmcc1 (MGP_PahariEiJ_G0022516)	Washc2 (MGP_PahariEiJ_G0022517)	MGP_PahariEiJ_G0022518	MGP_PahariEiJ_G0022519	Marchf8 (MGP_PahariEiJ_G0022520)
Rat	MODERN SPECIES	14	Slc6a1 (ENSRNOG00000006527) #8	Hrh1 (ENSRNOG00000007420) #10	LOC120102367 (ENSRNOG00000067090)	ENSRNOG00000069624	Atg7 (ENSRNOG00000007486) #11	Vgll4 (ENSRNOG00000007822) #12	Tamm41 (ENSRNOG00000007874) #13	Syn2 (ENSRNOG00000008157) #14	ENSRNOG00000067395	AC128901.1 (ENSRNOG00000028826)	ENSRNOG00000069227	Timp4 (ENSRNOG00000007955) #15	Pparg (ENSRNOG00000008839) #19	Tsen2 (ENSRNOG00000060175) #20	Mkrn2os (ENSRNOG00000070957) #21	Mkrn2 (ENSRNOG00000009176) #22	Raf1 (ENSRNOG00000010153) #23	Tmem40 (ENSRNOG00000010430) #24	Cand2 (ENSRNOG00000010473) #26	Rpl32 (ENSRNOG00000010746) ##27	Efcab12 (ENSRNOG00000026176)	Mbd4 (ENSRNOG00000010919)	Ift122 (ENSRNOG00000010952)	Rho (ENSRNOG00000011144)	H1f8 (ENSRNOG00000025251)	Plxnd1 (ENSRNOG00000025209)	AABR07061825.2 (ENSRNOG00000059964)	Tmcc1 (ENSRNOG00000011614)	LOC680385 (ENSRNOG00000011606)	Washc2c (ENSRNOG00000011653)	Zfand4 (ENSRNOG00000011791)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707	Tatdn2 (ENSNGAG00000011523)	Ghrl (ENSNGAG00000022045)	Sec13 (ENSNGAG00000003425)	Atp2b2 (ENSNGAG00000015473)	Slc6a11 (ENSNGAG00000013842) #7	Slc6a1 (ENSNGAG00000015663) #8	Hrh1 (ENSNGAG00000021456) #10	ENSNGAG00000003030	Vgll4 (ENSNGAG00000013946) #12	Tamm41 (ENSNGAG00000013592) #13	Syn2 (ENSNGAG00000022266) #14	Timp4 (ENSNGAG00000021746) #15	Pparg (ENSNGAG00000014683) #19	ENSNGAG00000013561 #20	Mkrn2os (ENSNGAG00000019573) #21	Mkrn2 (ENSNGAG00000012579) #22	Raf1 (ENSNGAG00000019548) #23	Tmem40 (ENSNGAG00000021850) #24	Cand2 (ENSNGAG00000024002) #26	ENSNGAG00000024001 ##27	Efcab12 (ENSNGAG00000008314)	ENSNGAG00000017381	Ift122 (ENSNGAG00000022462)	Rho (ENSNGAG00000020656)	H1f8 (ENSNGAG00000023630)	Plxnd1 (ENSNGAG00000020476)	Tmcc1 (ENSNGAG00000010573)	Trh (ENSNGAG00000022332)	Rbsn (ENSNGAG00000022967)	Mrps25 (ENSNGAG00000021861)	Nr2c2 (ENSNGAG00000022501)
Lesser Egyptian jerboa	MODERN SPECIES	45	Sec13 (ENSJJAG00000023600)	Atp2b2 (ENSJJAG00000009628)	Slc6a11 (ENSJJAG00000008690) #7	Slc6a1 (ENSJJAG00000013717) #8	Hrh1 (ENSJJAG00000012905) #10	Atg7 (ENSJJAG00000021264) #11	Vgll4 (ENSJJAG00000017532) #12	Tamm41 (ENSJJAG00000015841) #13	Timp4 (ENSJJAG00000015654) #15	ENSJJAG00000015072 #14	ENSJJAG00000012036	Pparg (ENSJJAG00000023734) #19	ENSJJAG00000002861 #20	ENSJJAG00000015646	Mkrn2os (ENSJJAG00000022652) #21	Mkrn2 (ENSJJAG00000019765) #22	ENSJJAG00000016961 #23	Tmem40 (ENSJJAG00000009444) #24	Cand2 (ENSJJAG00000018247) #26	ENSJJAG00000021233 ##27	ENSJJAG00000016695	Ift122 (ENSJJAG00000020288)	Rho (ENSJJAG00000022285)	ENSJJAG00000014828	Plxnd1 (ENSJJAG00000014069)	ENSJJAG00000020659	Tmcc1 (ENSJJAG00000019999)	ENSJJAG00000023012	Rbsn (ENSJJAG00000024360)	Mrps25 (ENSJJAG00000013413)	Nr2c2 (ENSJJAG00000016580)
Kangaroo rat	MODERN SPECIES	331	Irak2 (ENSDORG00000012277)	Tatdn2 (ENSDORG00000012279)	Ghrl (ENSDORG00000012281)	Sec13 (ENSDORG00000015327)	Atp2b2 (ENSDORG00000015330)	Slc6a11 (ENSDORG00000016390) #7	Slc6a1 (ENSDORG00000016380) #8	Atg7 (ENSDORG00000004380) #11	Vgll4 (ENSDORG00000004378) #12	Tamm41 (ENSDORG00000002091) #13	Timp4 (ENSDORG00000009509) #15	ENSDORG00000009507 #14	Pparg (ENSDORG00000003445) #19	Tsen2 (ENSDORG00000003395) #20	Mkrn2os (ENSDORG00000028573) #21	Mkrn2 (ENSDORG00000015621) #22	Raf1 (ENSDORG00000015622) #23	ENSDORG00000023579 #24	Cand2 (ENSDORG00000008424) #26	Rpl32 (ENSDORG00000008426) ##27	ENSDORG00000000902	Ift122 (ENSDORG00000000906)	Rho (ENSDORG00000000911)	ENSDORG00000026967	Plxnd1 (ENSDORG00000000912)	Tmcc1 (ENSDORG00000026595)	Rbsn (ENSDORG00000009815)	Mrps25 (ENSDORG00000026838)	Nr2c2 (ENSDORG00000007038)	Fgd5 (ENSDORG00000016297)	4930590J08Rik (ENSDORG00000007329)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183077.a.b #22
Hedgehog	MODERN SPECIES	7890																MKRN2 (ENSEEUG00000002217) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.a.b ##27	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Ursus	ANCESTRAL SPECIES	43	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.c.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000012138.a.a.j.s.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
American black bear	MODERN SPECIES	4165															ENSUAMG00000023642	MKRN2 (ENSUAMG00000023641) #22	ENSUAMG00000022973 #23
Polar bear	MODERN SPECIES	210	TATDN2 (ENSUMAG00000018632)	GHRL (ENSUMAG00000018619)	SEC13 (ENSUMAG00000018614)	ATP2B2 (ENSUMAG00000018280)	SLC6A11 (ENSUMAG00000018214) #7	SLC6A1 (ENSUMAG00000017999) #8	HRH1 (ENSUMAG00000017957) #10	ATG7 (ENSUMAG00000017892) #11	VGLL4 (ENSUMAG00000017868) #12	TAMM41 (ENSUMAG00000017859) #13	TIMP4 (ENSUMAG00000017853) #15	SYN2 (ENSUMAG00000017656) #14	PPARG (ENSUMAG00000017617) #19	TSEN2 (ENSUMAG00000017610) #20	MKRN2OS (ENSUMAG00000017608) #21	MKRN2 (ENSUMAG00000017606) #22	RAF1 (ENSUMAG00000017600) #23	TMEM40 (ENSUMAG00000017596) #24	CAND2 (ENSUMAG00000017566) #26	RPL32 (ENSUMAG00000017557) #27	EFCAB12 (ENSUMAG00000017549)	ENSUMAG00000017544	MBD4 (ENSUMAG00000017542)	IFT122 (ENSUMAG00000017522)	RHO (ENSUMAG00000017511)	PLXND1 (ENSUMAG00000017372)	TMCC1 (ENSUMAG00000017322)	TRH (ENSUMAG00000017316)	RBSN (ENSUMAG00000017308)	MRPS25 (ENSUMAG00000017301)	NR2C2 (ENSUMAG00000017295)
Giant Panda	MODERN SPECIES	14	TATDN2 (ENSAMEG00000016012)	GHRL (ENSAMEG00000016009)	SEC13 (ENSAMEG00000015994)	ATP2B2 (ENSAMEG00000015866)	SLC6A11 (ENSAMEG00000013958) #7	SLC6A1 (ENSAMEG00000028234) #8	HRH1 (ENSAMEG00000019211) #10	ATG7 (ENSAMEG00000013130) #11	VGLL4 (ENSAMEG00000011011) #12	TAMM41 (ENSAMEG00000010999) #13	SYN2 (ENSAMEG00000004794) #14	TIMP4 (ENSAMEG00000004836) #15	PPARG (ENSAMEG00000004774) #19	TSEN2 (ENSAMEG00000004748) #20	MKRN2OS (ENSAMEG00000004745) #21	MKRN2 (ENSAMEG00000004720) #22	RAF1 (ENSAMEG00000004650) #23	ENSAMEG00000025362	TMEM40 (ENSAMEG00000004646) #24	CAND2 (ENSAMEG00000004596) #26	RPL32 (ENSAMEG00000004583) ##27	ENSAMEG00000004574	MBD4 (ENSAMEG00000004562)	ENSAMEG00000030948	IFT122 (ENSAMEG00000004471)	RHO (ENSAMEG00000004453)	H1-8 (ENSAMEG00000004448)	PLXND1 (ENSAMEG00000004387)	TMCC1 (ENSAMEG00000004384)	TRH (ENSAMEG00000025033)	ENSAMEG00000004361
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
American mink	MODERN SPECIES	287										SYN2 (ENSNVIG00000008362) #14	ENSNVIG00000008402	TIMP4 (ENSNVIG00000008416) #15	PPARG (ENSNVIG00000008444) #19	TSEN2 (ENSNVIG00000008550) #20	MKRN2OS (ENSNVIG00000008607) #21	MKRN2 (ENSNVIG00000008629) #22	RAF1 (ENSNVIG00000008700) #23	ENSNVIG00000008812	TMEM40 (ENSNVIG00000008852) #24	CAND2 (ENSNVIG00000008985) #26	ENSNVIG00000009040 ##27	EFCAB12 (ENSNVIG00000009088)	MBD4 (ENSNVIG00000009126)	IFT122 (ENSNVIG00000009217)	RHO (ENSNVIG00000009693)	H1-8 (ENSNVIG00000009706)	PLXND1 (ENSNVIG00000009720)	TMCC1 (ENSNVIG00000009775)	TRH (ENSNVIG00000009787)	RBSN (ENSNVIG00000009795)	MRPS25 (ENSNVIG00000009805)
Ferret	MODERN SPECIES	163	TATDN2 (ENSMPUG00000017160)	SEC13 (ENSMPUG00000017161)	ATP2B2 (ENSMPUG00000017163)	ENSMPUG00000017167	SLC6A11 (ENSMPUG00000017168) #7	SLC6A1 (ENSMPUG00000017170) #8	HRH1 (ENSMPUG00000020115) #10	ATG7 (ENSMPUG00000017171) #11	VGLL4 (ENSMPUG00000017174) #12	TAMM41 (ENSMPUG00000017175) #13	SYN2 (ENSMPUG00000017176) #14	TIMP4 (ENSMPUG00000017178) #15	PPARG (ENSMPUG00000017181) #19	TSEN2 (ENSMPUG00000017182) #20	MKRN2OS (ENSMPUG00000017183) #21	MKRN2 (ENSMPUG00000017184) #22	RAF1 (ENSMPUG00000017185) #23	TMEM40 (ENSMPUG00000017187) #24	CAND2 (ENSMPUG00000017188) #26	ENSMPUG00000017189 ##27	EFCAB12 (ENSMPUG00000017190)	MBD4 (ENSMPUG00000017195)	IFT122 (ENSMPUG00000017197)	RHO (ENSMPUG00000017225)	ENSMPUG00000017237	PLXND1 (ENSMPUG00000017238)	ENSMPUG00000017241	TMCC1 (ENSMPUG00000017243)	TRH (ENSMPUG00000017246)	RBSN (ENSMPUG00000017247)	MRPS25 (ENSMPUG00000017248)
Canidae	ANCESTRAL SPECIES		ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00940000162517.e.b.b	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.a.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00940000162517.e.b.b	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.a.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00950000183087.A.a.a.b.p.a.a	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Dingo	MODERN SPECIES	236	SEC13 (ENSCAFG00020008342)	ATP2B2 (ENSCAFG00020007890)	SLC6A11 (ENSCAFG00020007842) #7	SLC6A1 (ENSCAFG00020007634) #8	HRH1 (ENSCAFG00020007622) #10	ATG7 (ENSCAFG00020007592) #11	VGLL4 (ENSCAFG00020007573) #12	ENSCAFG00020007566	TAMM41 (ENSCAFG00020007562) #13	TIMP4 (ENSCAFG00020007541) #15	SYN2 (ENSCAFG00020007281) #14	PPARG (ENSCAFG00020007261) #19	TSEN2 (ENSCAFG00020007250) #20	MKRN2OS (ENSCAFG00020007247) #21	ENSCAFG00020007244	MKRN2 (ENSCAFG00020007243) #22	RAF1 (ENSCAFG00020007230) #23	TMEM40 (ENSCAFG00020007225) #24	CAND2 (ENSCAFG00020007135) #26	RPL32 (ENSCAFG00020007109) ##27	EFCAB12 (ENSCAFG00020007096)	MBD4 (ENSCAFG00020007082)	IFT122 (ENSCAFG00020006537)	RHO (ENSCAFG00020006492)	H1-8 (ENSCAFG00020006486)	PLXND1 (ENSCAFG00020006389)	ENSCAFG00020006372	ENSCAFG00020006362	ENSCAFG00020006358	ENSCAFG00020006352	TRH (ENSCAFG00020006350)
Dog	MODERN SPECIES	12	SEC13 (ENSCAFG00845007748)	ATP2B2 (ENSCAFG00845007221)	SLC6A11 (ENSCAFG00845006781) #7	SLC6A1 (ENSCAFG00845006668) #8	HRH1 (ENSCAFG00845006605) #10	ATG7 (ENSCAFG00845006288) #11	VGLL4 (ENSCAFG00845006044) #12	ENSCAFG00845005976	TAMM41 (ENSCAFG00845005937) #13	TIMP4 (ENSCAFG00845029189) #15	SYN2 (ENSCAFG00845029109) #14	PPARG (ENSCAFG00845029007) #19	TSEN2 (ENSCAFG00845028923) #20	MKRN2OS (ENSCAFG00845028857) #21	ENSCAFG00845028837	MKRN2 (ENSCAFG00845028765) #22	ENSCAFG00845028720	RAF1 (ENSCAFG00845028676) #23	TMEM40 (ENSCAFG00845028589) #24	CAND2 (ENSCAFG00845028524) #26	RPL32 (ENSCAFG00845028446) ##27	ENSCAFG00845028379	MBD4 (ENSCAFG00845028304)	IFT122 (ENSCAFG00845027707)	RHO (ENSCAFG00845027581)	H1-8 (ENSCAFG00845027541)	PLXND1 (ENSCAFG00845026992)	RPL26 (ENSCAFG00845026761)	TMCC1 (ENSCAFG00845026698)	ENSCAFG00845026667	TRH (ENSCAFG00845026628)
Red fox	MODERN SPECIES	130	HRH1 (ENSVVUG00000015819) #10	ATG7 (ENSVVUG00000015693) #11	VGLL4 (ENSVVUG00000015675) #12	ENSVVUG00000015670	TAMM41 (ENSVVUG00000015667) #13	ENSVVUG00000015666	TIMP4 (ENSVVUG00000015655) #15	SYN2 (ENSVVUG00000015294) #14	ENSVVUG00000015270	PPARG (ENSVVUG00000015266) #19	TSEN2 (ENSVVUG00000015253) #20	ENSVVUG00000015251 #21	ENSVVUG00000015247	ENSVVUG00000015244	ENSVVUG00000015242	MKRN2 (ENSVVUG00000015240) #22	RAF1 (ENSVVUG00000015233) #23	ENSVVUG00000015228	CAND2 (ENSVVUG00000014272) #26	RPL32 (ENSVVUG00000014231) ##27	EFCAB12 (ENSVVUG00000014226)	MBD4 (ENSVVUG00000014222)	IFT122 (ENSVVUG00000014184)	RHO (ENSVVUG00000014149)	H1-8 (ENSVVUG00000014145)	PLXND1 (ENSVVUG00000013916)	TMCC1 (ENSVVUG00000013886)	TRH (ENSVVUG00000013865)	RBSN (ENSVVUG00000013853)	MRPS25 (ENSVVUG00000013846)	ENSVVUG00000013842
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Cat	MODERN SPECIES	1	GHRL (ENSFCAG00000011244)	SEC13 (ENSFCAG00000011245)	ATP2B2 (ENSFCAG00000011247)	SLC6A11 (ENSFCAG00000006043) #7	SLC6A1 (ENSFCAG00000004345) #8	HRH1 (ENSFCAG00000034897) #10	ATG7 (ENSFCAG00000003263) #11	VGLL4 (ENSFCAG00000003266) #12	TAMM41 (ENSFCAG00000030835) #13	SYN2 (ENSFCAG00000006229) #14	TIMP4 (ENSFCAG00000028966) #15	PPARG (ENSFCAG00000006231) #19	TSEN2 (ENSFCAG00000025500) #20	MKRN2OS (ENSFCAG00000046813) #21	ENSFCAG00000049119	MKRN2 (ENSFCAG00000007979) #22	RAF1 (ENSFCAG00000026299) #23	TMEM40 (ENSFCAG00000037003) #24	ENSFCAG00000052196	CAND2 (ENSFCAG00000008340) #26	RPL32 (ENSFCAG00000030450) ##27	EFCAB12 (ENSFCAG00000000081)	MBD4 (ENSFCAG00000000083)	IFT122 (ENSFCAG00000000086)	RHO (ENSFCAG00000000092)	H1-8 (ENSFCAG00000000094)	PLXND1 (ENSFCAG00000000095)	TMCC1 (ENSFCAG00000027586)	TRH (ENSFCAG00000029423)	RBSN (ENSFCAG00000025901)	MRPS25 (ENSFCAG00000027687)
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Tiger	MODERN SPECIES	57	TATDN2 (ENSPTIG00000021381)	GHRL (ENSPTIG00000020903)	SEC13 (ENSPTIG00000019088)	ATP2B2 (ENSPTIG00000016845)	SLC6A11 (ENSPTIG00000016056) #7	SLC6A1 (ENSPTIG00000015454) #8	HRH1 (ENSPTIG00000005327) #10	ATG7 (ENSPTIG00000012782) #11	VGLL4 (ENSPTIG00000011766) #12	TAMM41 (ENSPTIG00000009439) #13	TIMP4 (ENSPTIG00000009274) #15	SYN2 (ENSPTIG00000005386) #14	PPARG (ENSPTIG00000021339) #19	TSEN2 (ENSPTIG00000021018) #20	MKRN2OS (ENSPTIG00000020689) #21	MKRN2 (ENSPTIG00000020261) #22	RAF1 (ENSPTIG00000019431) #23	TMEM40 (ENSPTIG00000016867) #24	CAND2 (ENSPTIG00000014551) #26	RPL32 (ENSPTIG00000013290) ##27	EFCAB12 (ENSPTIG00000012496)	ENSPTIG00000012068	IFT122 (ENSPTIG00000017825)	RHO (ENSPTIG00000016846)	H1-8 (ENSPTIG00000016687)	ENSPTIG00000016640	ENSPTIG00000016501
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
lion	MODERN SPECIES	2	GHRL (ENSPLOG00000000147)	SEC13 (ENSPLOG00000000172)	ATP2B2 (ENSPLOG00000000482)	SLC6A11 (ENSPLOG00000000895) #7	SLC6A1 (ENSPLOG00000001048) #8	HRH1 (ENSPLOG00000001150) #10	ATG7 (ENSPLOG00000001203) #11	ENSPLOG00000001305	VGLL4 (ENSPLOG00000001346) #12	TAMM41 (ENSPLOG00000001396) #13	SYN2 (ENSPLOG00000001422) #14	TIMP4 (ENSPLOG00000001454) #15	PPARG (ENSPLOG00000001496) #19	TSEN2 (ENSPLOG00000001594) #20	MKRN2OS (ENSPLOG00000001659) #21	MKRN2 (ENSPLOG00000001691) #22	RAF1 (ENSPLOG00000001743) #23	TMEM40 (ENSPLOG00000001779) #24	CAND2 (ENSPLOG00000001847) #26	RPL32 (ENSPLOG00000001870) ##27	EFCAB12 (ENSPLOG00000001903)	MBD4 (ENSPLOG00000002021)	IFT122 (ENSPLOG00000002159)	RHO (ENSPLOG00000002405)	H1-8 (ENSPLOG00000002423)	PLXND1 (ENSPLOG00000002460)	TMCC1 (ENSPLOG00000002518)	TRH (ENSPLOG00000002548)	RBSN (ENSPLOG00000002563)	MRPS25 (ENSPLOG00000002725)	NR2C2 (ENSPLOG00000002757)
leopard	MODERN SPECIES	154															MKRN2OS (ENSPPRG00000021987) #21	MKRN2 (ENSPPRG00000021887) #22	RAF1 (ENSPPRG00000021390) #23	TMEM40 (ENSPPRG00000018566) #24	CAND2 (ENSPPRG00000017246) #26	RPL32 (ENSPPRG00000016964) ##27	EFCAB12 (ENSPPRG00000016816)	MBD4 (ENSPPRG00000016480)	IFT122 (ENSPPRG00000015865)	ENSPPRG00000014504	RHO (ENSPPRG00000014471)	H1-8 (ENSPPRG00000014444)	PLXND1 (ENSPPRG00000014283)	TMCC1 (ENSPPRG00000014113)	TRH (ENSPPRG00000013952)	RBSN (ENSPPRG00000013941)	MRPS25 (ENSPPRG00000013901)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Equus	ANCESTRAL SPECIES	5	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084.ab.a.b #23	ENSGT00950000186178	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Horse	MODERN SPECIES	7	ATP2B2 (ENSECAG00000023528)	SLC6A11 (ENSECAG00000004220) #7	SLC6A1 (ENSECAG00000000699) #8	HRH1 (ENSECAG00000004544) #10	ENSECAG00000057850	ENSECAG00000048096	ATG7 (ENSECAG00000022756) #11	VGLL4 (ENSECAG00000039947) #12	TAMM41 (ENSECAG00000013860) #13	TIMP4 (ENSECAG00000011609) #15	SYN2 (ENSECAG00000049642) #14	PPARG (ENSECAG00000016664) #19	ENSECAG00000039510	TSEN2 (ENSECAG00000012813) #20	MKRN2OS (ENSECAG00000012416)	MKRN2 (ENSECAG00000024404) #22	RAF1 (ENSECAG00000011807) #23	ENSECAG00000033555	TMEM40 (ENSECAG00000008940) #24	RPL32 (ENSECAG00000049946) ##27	CAND2 (ENSECAG00000010515) #26	MBD4 (ENSECAG00000022106)	IFT122 (ENSECAG00000015360)	RHO (ENSECAG00000013709)	H1-8 (ENSECAG00000013614)	PLXND1 (ENSECAG00000009159)	TMCC1 (ENSECAG00000006725)	TRH (ENSECAG00000006178)	RBSN (ENSECAG00000021486)	MRPS25 (ENSECAG00000020841)	NR2C2 (ENSECAG00000003791)
Donkey	MODERN SPECIES	13	ATP2B2 (ENSEASG00005014293)	ENSEASG00005034257	SLC6A11 (ENSEASG00005014295) #7	SLC6A1 (ENSEASG00005014296) #8	HRH1 (ENSEASG00005025266) #10	ATG7 (ENSEASG00005014298) #11	ENSEASG00005027051	VGLL4 (ENSEASG00005014301) #12	TAMM41 (ENSEASG00005014302) #13	SYN2 (ENSEASG00005014311) #14	TIMP4 (ENSEASG00005030754) #15	PPARG (ENSEASG00005014732) #19	TSEN2 (ENSEASG00005014763) #20	ENSEASG00005014772	MKRN2OS (ENSEASG00005035083) #21	MKRN2 (ENSEASG00005014776) #22	ENSEASG00005014777 #23	TMEM40 (ENSEASG00005033260) #24	ENSEASG00005025405	CAND2 (ENSEASG00005014788) #26	ENSEASG00005014792 ##27	MBD4 (ENSEASG00005014800)	IFT122 (ENSEASG00005014840)	RHO (ENSEASG00005015347)	H1-8 (ENSEASG00005025925)	PLXND1 (ENSEASG00005015351)	TMCC1 (ENSEASG00005015373)	ENSEASG00005015376	ENSEASG00005015384	ENSEASG00005015419	NR2C2 (ENSEASG00005015422)
Chiroptera	ANCESTRAL SPECIES	54	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Megabat	MODERN SPECIES	1499															TSEN2 (ENSPVAG00000005820) #20	MKRN2 (ENSPVAG00000005822) #22	RAF1 (ENSPVAG00000005823) #23	TMEM40 (ENSPVAG00000005825) #24	CAND2 (ENSPVAG00000005826) #26
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Greater horseshoe bat	MODERN SPECIES	8	TATDN2 (ENSRFEG00010010704)	ENSRFEG00010010629	ENSRFEG00010010425	ATP2B2 (ENSRFEG00010019414)	SLC6A11 (ENSRFEG00010019331) #7	SLC6A1 (ENSRFEG00010019187) #8	HRH1 (ENSRFEG00010019159) #10	ATG7 (ENSRFEG00010019096) #11	VGLL4 (ENSRFEG00010019005) #12	TAMM41 (ENSRFEG00010018912) #13	TIMP4 (ENSRFEG00010018875) #15	SYN2 (ENSRFEG00010018840) #14	PPARG (ENSRFEG00010018692) #19	TSEN2 (ENSRFEG00010018592) #20	MKRN2OS (ENSRFEG00010018565) #21	MKRN2 (ENSRFEG00010018469) #22	RAF1 (ENSRFEG00010018423) #23	TMEM40 (ENSRFEG00010018278) #24	CAND2 (ENSRFEG00010018212) #26	RPL32 (ENSRFEG00010018162) ##27	EFCAB12 (ENSRFEG00010018070)	MBD4 (ENSRFEG00010018007)	IFT122 (ENSRFEG00010017745)	RHO (ENSRFEG00010017659)	PLXND1 (ENSRFEG00010017592)	TMCC1 (ENSRFEG00010017473)	ENSRFEG00010017442	TRH (ENSRFEG00010017403)	RBSN (ENSRFEG00010017337)	MRPS25 (ENSRFEG00010017280)	ENSRFEG00010017258
Microbat	MODERN SPECIES	945	TATDN2 (ENSMLUG00000004584)	GHRL (ENSMLUG00000012014)	SEC13 (ENSMLUG00000004901)	ATP2B2 (ENSMLUG00000001467)	ENSMLUG00000009590 #7	SLC6A1 (ENSMLUG00000002027) #8	HRH1 (ENSMLUG00000010552) #10	ATG7 (ENSMLUG00000010572) #11	VGLL4 (ENSMLUG00000010597) #12	TAMM41 (ENSMLUG00000015063) #13	TIMP4 (ENSMLUG00000006263) #15	SYN2 (ENSMLUG00000006253) #14	PPARG (ENSMLUG00000017638) #19	TSEN2 (ENSMLUG00000017641) #20	MKRN2OS (ENSMLUG00000024734) #21	MKRN2 (ENSMLUG00000017643) #22	RAF1 (ENSMLUG00000017645) #23	TMEM40 (ENSMLUG00000002835) #24	CAND2 (ENSMLUG00000006333) #26	RPL32 (ENSMLUG00000022528) ##27	ENSMLUG00000014759	MBD4 (ENSMLUG00000014766)	IFT122 (ENSMLUG00000014771)	RHO (ENSMLUG00000014786)	ENSMLUG00000025226	PLXND1 (ENSMLUG00000014790)	TMCC1 (ENSMLUG00000016755)	TRH (ENSMLUG00000007249)	RBSN (ENSMLUG00000010088)	ENSMLUG00000017504	NR2C2 (ENSMLUG00000010062)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00940000175447	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Arabian camel	MODERN SPECIES	8	TATDN2 (ENSCDRG00005015003)	GHRL (ENSCDRG00005015107)	SEC13 (ENSCDRG00005015206)	ATP2B2 (ENSCDRG00005015469)	SLC6A11 (ENSCDRG00005015983) #7	SLC6A1 (ENSCDRG00005016134) #8	HRH1 (ENSCDRG00005016405) #10	ATG7 (ENSCDRG00005016438) #11	VGLL4 (ENSCDRG00005016647) #12	TAMM41 (ENSCDRG00005016988) #13	SYN2 (ENSCDRG00005017059) #14	TIMP4 (ENSCDRG00005017087) #15	PPARG (ENSCDRG00005017141) #19	TSEN2 (ENSCDRG00005017293) #20	MKRN2OS (ENSCDRG00005017382) #21	MKRN2 (ENSCDRG00005017406) #22	RAF1 (ENSCDRG00005017576) #23	TMEM40 (ENSCDRG00005017673) #24	CAND2 (ENSCDRG00005017872) #26	ENSCDRG00005018038 ##27	EFCAB12 (ENSCDRG00005018119)	MBD4 (ENSCDRG00005018206)	IFT122 (ENSCDRG00005018267)	RHO (ENSCDRG00005018442)	ENSCDRG00005018477	ENSCDRG00005018504	ENSCDRG00005018533	PLXND1 (ENSCDRG00005018551)	TMCC1 (ENSCDRG00005018594)	TRH (ENSCDRG00005003364)	RBSN (ENSCDRG00005003390)
Alpaca	MODERN SPECIES	1304												ENSVPAG00000011052 #14	TIMP4 (ENSVPAG00000011058) #15	PPARG (ENSVPAG00000011059) #19	ENSVPAG00000011061 #20	MKRN2 (ENSVPAG00000011064) #22	RAF1 (ENSVPAG00000011066) #23	TMEM40 (ENSVPAG00000011071) #24
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Pecora	ANCESTRAL SPECIES	17	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Yarkand deer	MODERN SPECIES	16	XPC (ENSCHYG00000023838) #36	LSM3 (ENSCHYG00000023916) #37	SLC6A6 (ENSCHYG00000023942)	GRIP2 (ENSCHYG00000024067)	ENSCHYG00000024372	C3orf20 (ENSCHYG00000024531)	FGD5 (ENSCHYG00000024639)	NR2C2 (ENSCHYG00000024864)	ENSCHYG00000025047	RBSN (ENSCHYG00000025089)	ENSCHYG00000025128 #14	TIMP4 (ENSCHYG00000025170) #15	PPARG (ENSCHYG00000025198) #19	TSEN2 (ENSCHYG00000025333) #20	MKRN2OS (ENSCHYG00000025406) #21	MKRN2 (ENSCHYG00000025428) #22	RAF1 (ENSCHYG00000025496) #23	ENSCHYG00000013805	TMEM40 (ENSCHYG00000013848) #24	CAND2 (ENSCHYG00000014141) #26	ENSCHYG00000014472	ENSCHYG00000014488 ##27	EFCAB12 (ENSCHYG00000014606)	MBD4 (ENSCHYG00000014755)	IFT122 (ENSCHYG00000015047)	RHO (ENSCHYG00000017188)	H1-8 (ENSCHYG00000017241)	ENSCHYG00000017294	TMCC1 (ENSCHYG00000017484)	TRH (ENSCHYG00000017738)	TAMM41 (ENSCHYG00000017796) #13
Percora_a	ANCESTRAL SPECIES	19	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Siberian musk deer	MODERN SPECIES	1221	TMEM42 (ENSMMSG00000018480)	ENSMMSG00000018446	SEC13 (ENSMMSG00000018353)	ATP2B2 (ENSMMSG00000015764)	SLC6A11 (ENSMMSG00000015601) #7	SLC6A1 (ENSMMSG00000015486) #8	HRH1 (ENSMMSG00000015454) #10	ATG7 (ENSMMSG00000015338) #11	VGLL4 (ENSMMSG00000015264) #12	TAMM41 (ENSMMSG00000015235) #13	TIMP4 (ENSMMSG00000015209) #15	SYN2 (ENSMMSG00000015141) #14	PPARG (ENSMMSG00000015004) #19	TSEN2 (ENSMMSG00000014963) #20	MKRN2OS (ENSMMSG00000014926) #21	MKRN2 (ENSMMSG00000014895) #22	RAF1 (ENSMMSG00000024157) #23	TMEM40 (ENSMMSG00000024144) #24	CAND2 (ENSMMSG00000024132) #26	RPL32 (ENSMMSG00000024124) ##27	EFCAB12 (ENSMMSG00000024116)	MBD4 (ENSMMSG00000024114)	IFT122 (ENSMMSG00000024092)	RHO (ENSMMSG00000024086)	ENSMMSG00000024082	PLXND1 (ENSMMSG00000024073)	TMCC1 (ENSMMSG00000024064)	ENSMMSG00000024063	TRH (ENSMMSG00000024061)	RBSN (ENSMMSG00000024056)	MRPS25 (ENSMMSG00000024052)
Bovidae	ANCESTRAL SPECIES	19	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000000616.k #13	ENSGT00390000003282.B #12	ENSGT00390000017509 #11
Caprinae	ANCESTRAL SPECIES	15	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000000616.k #13	ENSGT00390000003282.B #12	ENSGT00390000017509 #11
Rambouillet Sheep	MODERN SPECIES	10	CHCHD4 (ENSOARG00020025962) #34	TMEM43 (ENSOARG00020025957) #35	ENSOARG00020025950 #37	SLC6A6 (ENSOARG00020025943)	GRIP2 (ENSOARG00020025919)	CCDC174 (ENSOARG00020025904)	C3orf20 (ENSOARG00020025893)	NR2C2 (ENSOARG00020025878)	MRPS25 (ENSOARG00020025871)	RBSN (ENSOARG00020025862)	ENSOARG00020025856 #15	SYN2 (ENSOARG00020025846) #14	PPARG (ENSOARG00020025834) #19	TSEN2 (ENSOARG00020025828) #20	MKRN2OS (ENSOARG00020025824) #21	MKRN2 (ENSOARG00020025818) #22	RAF1 (ENSOARG00020025810) #23	TMEM40 (ENSOARG00020025803) #24	CAND2 (ENSOARG00020025794) #26	RPL32 (ENSOARG00020025785) ##27	EFCAB12 (ENSOARG00020025775)	MBD4 (ENSOARG00020025769)	IFT122 (ENSOARG00020025765)	RHO (ENSOARG00020025763)	ENSOARG00020025760	PLXND1 (ENSOARG00020025735)	TMCC1 (ENSOARG00020025721)	TRH (ENSOARG00020025716)	TAMM41 (ENSOARG00020025710) #13	ENSOARG00020025707	VGLL4 (ENSOARG00020025701) #12
Goat	MODERN SPECIES	14	LSM3 (ENSCHIG00000024650) #37	SLC6A6 (ENSCHIG00000024785)	GRIP2 (ENSCHIG00000016620)	CCDC174 (ENSCHIG00000008286)	C3orf20 (ENSCHIG00000009719)	FGD5 (ENSCHIG00000023792)	NR2C2 (ENSCHIG00000008676)	MRPS25 (ENSCHIG00000009931)	RBSN (ENSCHIG00000019361)	ENSCHIG00000027078 #13	TIMP4 (ENSCHIG00000017995) #15	SYN2 (ENSCHIG00000024912) #14	PPARG (ENSCHIG00000015877) #19	TSEN2 (ENSCHIG00000013772) #20	MKRN2OS (ENSCHIG00000013445) #21	MKRN2 (ENSCHIG00000021098) #22	RAF1 (ENSCHIG00000006954) #23	CAND2 (ENSCHIG00000017799) #26	RPL32 (ENSCHIG00000011099) ##27	EFCAB12 (ENSCHIG00000024180)	MBD4 (ENSCHIG00000009760)	IFT122 (ENSCHIG00000018009)	RHO (ENSCHIG00000019086)	H1-8 (ENSCHIG00000015286)	PLXND1 (ENSCHIG00000008763)	ENSCHIG00000016746	ENSCHIG00000015861	TRH (ENSCHIG00000025325)	ENSCHIG00000002443 #13	VGLL4 (ENSCHIG00000019976) #12	ATG7 (ENSCHIG00000018813) #11
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000000616.k #13
Bos	ANCESTRAL SPECIES	16	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000000616.k #13
Bos_a	ANCESTRAL SPECIES	9	ENSGT00390000009671 #35	ENSGT00390000005194 #36	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000000616.k #13	ENSGT00390000003282.B #12
Wild yak	MODERN SPECIES	1473												ENSBMUG00000011252 #15	SYN2 (ENSBMUG00000011214) #14	PPARG (ENSBMUG00000011177) #19	MKRN2OS (ENSBMUG00000011070) #21	MKRN2 (ENSBMUG00000011049) #22	RAF1 (ENSBMUG00000011029) #23	ENSBMUG00000010983	TMEM40 (ENSBMUG00000010953) #24	CAND2 (ENSBMUG00000010855) #26	RPL32 (ENSBMUG00000010768) ##27	EFCAB12 (ENSBMUG00000010745)	MBD4 (ENSBMUG00000010711)	IFT122 (ENSBMUG00000010042)	RHO (ENSBMUG00000009767)	ENSBMUG00000009729	ENSBMUG00000009719	TMCC1 (ENSBMUG00000009638)	ENSBMUG00000009609	TRH (ENSBMUG00000009602)
Domestic yak	MODERN SPECIES	14	TMEM43 (ENSBGRG00000018668) #35	XPC (ENSBGRG00000018846) #36	ENSBGRG00000019432 #37	SLC6A6 (ENSBGRG00000019545)	GRIP2 (ENSBGRG00000020144)	CCDC174 (ENSBGRG00000021048)	C3orf20 (ENSBGRG00000021321)	FGD5 (ENSBGRG00000021386)	NR2C2 (ENSBGRG00000021614)	MRPS25 (ENSBGRG00000021676)	RBSN (ENSBGRG00000021762)	SYN2 (ENSBGRG00000021920) #14	TIMP4 (ENSBGRG00000022226) #15	ENSBGRG00000022315 #19	MKRN2OS (ENSBGRG00000022696) #21	MKRN2 (ENSBGRG00000022735) #22	RAF1 (ENSBGRG00000022891) #23	TMEM40 (ENSBGRG00000023210) #24	CAND2 (ENSBGRG00000023333) #26	RPL32 (ENSBGRG00000023548) ##27	EFCAB12 (ENSBGRG00000023675)	MBD4 (ENSBGRG00000023851)	IFT122 (ENSBGRG00000023990)	RHO (ENSBGRG00000024373)	ENSBGRG00000024409	ENSBGRG00000024437	ENSBGRG00000024462	TMCC1 (ENSBGRG00000024493)	ENSBGRG00000024583	TRH (ENSBGRG00000024598)	TAMM41 (ENSBGRG00000024630) #13
Bos_b	ANCESTRAL SPECIES	17	ENSGT00390000013951 #37	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.d ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000000616.k #13	ENSGT00390000003282.B #12	ENSGT00390000017509 #11
Hybrid Bos Indicus	MODERN SPECIES	14	LSM3 (ENSBIXG00005027836) #37	SLC6A6 (ENSBIXG00005027782)	GRIP2 (ENSBIXG00005027668)	ENSBIXG00005027488	ENSBIXG00005027475	CCDC174 (ENSBIXG00005027454)	C3orf20 (ENSBIXG00005027421)	FGD5 (ENSBIXG00005027347)	NR2C2 (ENSBIXG00005026766)	MRPS25 (ENSBIXG00005026733)	RBSN (ENSBIXG00005026693)	SYN2 (ENSBIXG00005026582) #14	TIMP4 (ENSBIXG00005026516) #15	ENSBIXG00005026465 #19	MKRN2OS (ENSBIXG00005026155) #21	MKRN2 (ENSBIXG00005026143) #22	RAF1 (ENSBIXG00005004450) #23	TMEM40 (ENSBIXG00005026020) #24	CAND2 (ENSBIXG00005025955) #26	RPL32 (ENSBIXG00005025898) ##27	MBD4 (ENSBIXG00005025831)	IFT122 (ENSBIXG00005025735)	RHO (ENSBIXG00005025616)	ENSBIXG00005025593	PLXND1 (ENSBIXG00005025560)	TMCC1 (ENSBIXG00005025216)	ENSBIXG00005025137	ENSBIXG00005025108	TRH (ENSBIXG00005025098)	ENSBIXG00005025048 #12	ATG7 (ENSBIXG00005024877) #11
Cow	MODERN SPECIES	14	LSM3 (ENSBTAG00000007363) #37	SLC6A6 (ENSBTAG00000011088)	GRIP2 (ENSBTAG00000011896)	CCDC174 (ENSBTAG00000038298)	C22H3orf20 (ENSBTAG00000040133)	FGD5 (ENSBTAG00000006789)	NR2C2 (ENSBTAG00000013716)	MRPS25 (ENSBTAG00000013723)	RBSN (ENSBTAG00000013725)	ENSBTAG00000031115 #13	TIMP4 (ENSBTAG00000020263) #15	SYN2 (ENSBTAG00000020260) #14	PPARG (ENSBTAG00000001333) #19	TSEN2 (ENSBTAG00000037980) #20	MKRN2OS (ENSBTAG00000024991) #21	MKRN2 (ENSBTAG00000004512) #22	RAF1 (ENSBTAG00000045748) #23	TMEM40 (ENSBTAG00000000161) #24	CAND2 (ENSBTAG00000015273) #26	RPL32 (ENSBTAG00000015283) ##27	EFCAB12 (ENSBTAG00000021643)	MBD4 (ENSBTAG00000021645)	IFT122 (ENSBTAG00000019121)	RHO (ENSBTAG00000001310)	H1-8 (ENSBTAG00000001812)	PLXND1 (ENSBTAG00000001814)	TMCC1 (ENSBTAG00000006614)	TRH (ENSBTAG00000005306)	TAMM41 (ENSBTAG00000003328) #13	VGLL4 (ENSBTAG00000018600) #12	ATG7 (ENSBTAG00000035827) #11
American bison	MODERN SPECIES	3340	TMEM43 (ENSBBBG00000010956) #35	XPC (ENSBBBG00000001954) #36	LSM3 (ENSBBBG00000007967) #37	SLC6A6 (ENSBBBG00000010987)	GRIP2 (ENSBBBG00000011088)	CCDC174 (ENSBBBG00000002003)	C3orf20 (ENSBBBG00000011153)	NR2C2 (ENSBBBG00000011226)	MRPS25 (ENSBBBG00000011234)	RBSN (ENSBBBG00000011250)	TIMP4 (ENSBBBG00000011264) #15	SYN2 (ENSBBBG00000011280) #14	PPARG (ENSBBBG00000011336) #19	TSEN2 (ENSBBBG00000002087) #20	MKRN2OS (ENSBBBG00000006934) #21	MKRN2 (ENSBBBG00000011440) #22	RAF1 (ENSBBBG00000011493) #23	TMEM40 (ENSBBBG00000011569) #24	CAND2 (ENSBBBG00000002144) #26	RPL32 (ENSBBBG00000002148) ##27	EFCAB12 (ENSBBBG00000011681)	MBD4 (ENSBBBG00000011698)	IFT122 (ENSBBBG00000002240)	RHO (ENSBBBG00000012003)	ENSBBBG00000012007	ENSBBBG00000012012	TMCC1 (ENSBBBG00000012034)	ENSBBBG00000012036	TRH (ENSBBBG00000012040)	TAMM41 (ENSBBBG00000012063) #13	VGLL4 (ENSBBBG00000012100) #12
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558.n
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558.n	ENSGT00940000158393
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558.n	ENSGT00940000158393
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558.n	ENSGT00940000158393
Beluga whale	MODERN SPECIES	66	IRAK2 (ENSDLEG00000014959)	ENSDLEG00000014979	ENSDLEG00000014986	GHRL (ENSDLEG00000015002)	SEC13 (ENSDLEG00000015045)	ATP2B2 (ENSDLEG00000015650)	SLC6A11 (ENSDLEG00000021059) #7	SLC6A1 (ENSDLEG00000021420) #8	HRH1 (ENSDLEG00000021424) #10	ATG7 (ENSDLEG00000021427) #11	TAMM41 (ENSDLEG00000021438) #13	SYN2 (ENSDLEG00000021448) #14	TIMP4 (ENSDLEG00000021450) #15	ENSDLEG00000021458 #19	ENSDLEG00000021477	MKRN2 (ENSDLEG00000021478) #22	RAF1 (ENSDLEG00000007956) #23	TMEM40 (ENSDLEG00000008007) #24	CAND2 (ENSDLEG00000008059) #26	RPL32 (ENSDLEG00000008175) ##27	ENSDLEG00000008201	MBD4 (ENSDLEG00000008239)	IFT122 (ENSDLEG00000008304)	RHO (ENSDLEG00000008470)	H1-8 (ENSDLEG00000008521)	PLXND1 (ENSDLEG00000008614)	TMCC1 (ENSDLEG00000008842)	TRH (ENSDLEG00000008893)	RBSN (ENSDLEG00000008914)	ENSDLEG00000008956	ENSDLEG00000008967
Narwhal	MODERN SPECIES	310	GHRL (ENSMMNG00015011143)	SEC13 (ENSMMNG00015011196)	ATP2B2 (ENSMMNG00015011282)	ENSMMNG00015011333	SLC6A11 (ENSMMNG00015011359) #7	SLC6A1 (ENSMMNG00015011419) #8	HRH1 (ENSMMNG00015011469) #10	ATG7 (ENSMMNG00015011505) #11	VGLL4 (ENSMMNG00015011616) #12	TAMM41 (ENSMMNG00015011672) #13	SYN2 (ENSMMNG00015011708) #14	TIMP4 (ENSMMNG00015011737) #15	PPARG (ENSMMNG00015011771) #19	TSEN2 (ENSMMNG00015011810) #20	MKRN2OS (ENSMMNG00015011881) #21	MKRN2 (ENSMMNG00015011904) #22	RAF1 (ENSMMNG00015011951) #23	TMEM40 (ENSMMNG00015012000) #24	CAND2 (ENSMMNG00015012039) #26	RPL32 (ENSMMNG00015012118) ##27	EFCAB12 (ENSMMNG00015012144)	MBD4 (ENSMMNG00015012156)	IFT122 (ENSMMNG00015012203)	RHO (ENSMMNG00015012293)	H1-8 (ENSMMNG00015012313)	PLXND1 (ENSMMNG00015012370)	TMCC1 (ENSMMNG00015012483)	TRH (ENSMMNG00015012517)	RBSN (ENSMMNG00015012525)	ENSMMNG00015012540	NR2C2 (ENSMMNG00015012595)
Vaquita	MODERN SPECIES	2	TATDN2 (ENSPSNG00000016441)	GHRL (ENSPSNG00000016272)	ENSPSNG00000015998	ATP2B2 (ENSPSNG00000013827)	SLC6A11 (ENSPSNG00000013275) #7	SLC6A1 (ENSPSNG00000012418) #8	HRH1 (ENSPSNG00000012320) #10	ATG7 (ENSPSNG00000011678) #11	VGLL4 (ENSPSNG00000011411) #12	TAMM41 (ENSPSNG00000011313) #13	TIMP4 (ENSPSNG00000011214) #15	SYN2 (ENSPSNG00000010964) #14	PPARG (ENSPSNG00000010554) #19	TSEN2 (ENSPSNG00000010460) #20	MKRN2OS (ENSPSNG00000010409) #21	MKRN2 (ENSPSNG00000010288) #22	RAF1 (ENSPSNG00000010184) #23	TMEM40 (ENSPSNG00000010002) #24	CAND2 (ENSPSNG00000009832) #26	RPL32 (ENSPSNG00000022724) ##27	EFCAB12 (ENSPSNG00000022723)	MBD4 (ENSPSNG00000022722)	IFT122 (ENSPSNG00000022721)	RHO (ENSPSNG00000022720)	H1-8 (ENSPSNG00000022719)	PLXND1 (ENSPSNG00000022718)	ENSPSNG00000022717	ENSPSNG00000022714	TRH (ENSPSNG00000022713)	RBSN (ENSPSNG00000022712)	ENSPSNG00000022711
Sperm whale	MODERN SPECIES	9	ENSPCTG00005007736	IRAK2 (ENSPCTG00005007701)	TATDN2 (ENSPCTG00005007678)	GHRL (ENSPCTG00005007648)	SEC13 (ENSPCTG00005007576)	SLC6A11 (ENSPCTG00005007501) #7	SLC6A1 (ENSPCTG00005006885) #8	HRH1 (ENSPCTG00005006823) #10	ATG7 (ENSPCTG00005006565) #11	VGLL4 (ENSPCTG00005006432) #12	TAMM41 (ENSPCTG00005006384) #13	TIMP4 (ENSPCTG00005006355) #15	SYN2 (ENSPCTG00005006330) #14	PPARG (ENSPCTG00005006236) #19	MKRN2OS (ENSPCTG00005006199) #21	MKRN2 (ENSPCTG00005006141) #22	RAF1 (ENSPCTG00005006081) #23	ENSPCTG00005006042 #26	ENSPCTG00005006016 ##27	EFCAB12 (ENSPCTG00005005960)	MBD4 (ENSPCTG00005005918)	IFT122 (ENSPCTG00005005825)	RHO (ENSPCTG00005005781)	H1-8 (ENSPCTG00005005747)	ENSPCTG00005005647	ENSPCTG00005005684	TRH (ENSPCTG00005005621)	ENSPCTG00005005601	TMCC1 (ENSPCTG00005005558)	RBSN (ENSPCTG00005005519)	MRPS25 (ENSPCTG00005005475)
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		ENSBMSG00010001698	IFFO2 (ENSBMSG00010001679)	ALDH4A1 (ENSBMSG00010001659)	TAS1R2 (ENSBMSG00010001618)	PAX7 (ENSBMSG00010001523)	KLHDC7A (ENSBMSG00010001507)	IGSF21 (ENSBMSG00010001491)	ACTL8 (ENSBMSG00010001478)	ARHGEF10L (ENSBMSG00010001332)	RCC2 (ENSBMSG00010001248)	PADI6 (ENSBMSG00010001172)	PADI4 (ENSBMSG00010001111)	PADI1 (ENSBMSG00010001060)	PADI2 (ENSBMSG00010001016)	ENSBMSG00010000986	ENSBMSG00010000977 #22	SDHB (ENSBMSG00010000950)	ENSBMSG00010000692	MFAP2 (ENSBMSG00010000626)	CROCC (ENSBMSG00010000545)	NECAP2 (ENSBMSG00010000450)	SPATA21 (ENSBMSG00010000388)	SZRD1 (ENSBMSG00010000357)	FBXO42 (ENSBMSG00010000326)	CPLANE2 (ENSBMSG00010000300)	ARHGEF19 (ENSBMSG00010000217)	EPHA2 (ENSBMSG00010000136)	FAM131C (ENSBMSG00010000090)	ENSBMSG00010000048	HSPB7 (ENSBMSG00010000026)	SRARP (ENSBMSG00010000016)
Blue whale	MODERN SPECIES	2	SEC13 (ENSBMSG00010008420)	ATP2B2 (ENSBMSG00010008618)	SLC6A11 (ENSBMSG00010009702) #7	SLC6A1 (ENSBMSG00010009806) #8	ENSBMSG00010009900	HRH1 (ENSBMSG00010009905) #10	ATG7 (ENSBMSG00010009931) #11	ENSBMSG00010009994 #12	ENSBMSG00010010031	TAMM41 (ENSBMSG00010010044) #13	SYN2 (ENSBMSG00010010076) #14	TIMP4 (ENSBMSG00010010106) #15	PPARG (ENSBMSG00010010135) #19	TSEN2 (ENSBMSG00010010317) #20	MKRN2OS (ENSBMSG00010010343) #21	MKRN2 (ENSBMSG00010010365) #22	RAF1 (ENSBMSG00010010408) #23	TMEM40 (ENSBMSG00010010438) #24	CAND2 (ENSBMSG00010010467) #26	RPL32 (ENSBMSG00010010483) ##27	EFCAB12 (ENSBMSG00010010503)	ENSBMSG00010010533	ENSBMSG00010010542	IFT122 (ENSBMSG00010010593)	RHO (ENSBMSG00010010727)	ENSBMSG00010010803	PLXND1 (ENSBMSG00010010833)	TMCC1 (ENSBMSG00010010919)	TRH (ENSBMSG00010010946)	RBSN (ENSBMSG00010010963)	MRPS25 (ENSBMSG00010010976)
Suina	ANCESTRAL SPECIES	1	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Chacoan peccary	MODERN SPECIES	950	SEC13 (ENSCWAG00000021789)	ENSCWAG00000011861	ATP2B2 (ENSCWAG00000012003)	SLC6A11 (ENSCWAG00000015415) #7	SLC6A1 (ENSCWAG00000015592) #8	HRH1 (ENSCWAG00000016580) #10	ATG7 (ENSCWAG00000016602) #11	VGLL4 (ENSCWAG00000016758) #12	ENSCWAG00000016872	TAMM41 (ENSCWAG00000016892) #13	SYN2 (ENSCWAG00000016935) #14	TIMP4 (ENSCWAG00000017007) #15	PPARG (ENSCWAG00000017057) #19	TSEN2 (ENSCWAG00000017441) #20	ENSCWAG00000017774	MKRN2 (ENSCWAG00000017797) #22	RAF1 (ENSCWAG00000017888) #23	TMEM40 (ENSCWAG00000017953) #24	CAND2 (ENSCWAG00000018031) #26	RPL32 (ENSCWAG00000018094) ##27	EFCAB12 (ENSCWAG00000018153)	ENSCWAG00000018222	ENSCWAG00000018236	ENSCWAG00000018255	IFT122 (ENSCWAG00000018289)	RHO (ENSCWAG00000018568)	H1-8 (ENSCWAG00000018609)	PLXND1 (ENSCWAG00000018660)	TMCC1 (ENSCWAG00000018870)	TRH (ENSCWAG00000018918)	RBSN (ENSCWAG00000018943)
Pig	MODERN SPECIES	4	GHRL (ENSSSCG00000011568)	SEC13 (ENSSSCG00000011572)	ATP2B2 (ENSSSCG00000023084)	SLC6A11 (ENSSSCG00000039850) #7	SLC6A1 (ENSSSCG00000011577) #8	HRH1 (ENSSSCG00000011576) #10	ATG7 (ENSSSCG00000011575) #11	VGLL4 (ENSSSCG00000030581) #12	TAMM41 (ENSSSCG00000011578) #13	SYN2 (ENSSSCG00000023225) #14	TIMP4 (ENSSSCG00000033000) #15	PPARG (ENSSSCG00000011579) #19	TSEN2 (ENSSSCG00000011580) #20	MKRN2OS (ENSSSCG00000011581) #21	ENSSSCG00000045850	MKRN2 (ENSSSCG00000029877) #22	RAF1 (ENSSSCG00000024453) #23	ENSSSCG00000056163	TMEM40 (ENSSSCG00000011583) #24	CAND2 (ENSSSCG00000011582) #26	RPL32 (ENSSSCG00000035811) ##27	EFCAB12 (ENSSSCG00000011587)	MBD4 (ENSSSCG00000033303)	IFT122 (ENSSSCG00000011589)	RHO (ENSSSCG00000011590)	H1-8 (ENSSSCG00000011591)	PLXND1 (ENSSSCG00000011592)	TMCC1 (ENSSSCG00000011593)	ENSSSCG00000040441	ENSSSCG00000044894	TRH (ENSSSCG00000055507)
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00940000153973.c.a.b.b ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Tenrec	MODERN SPECIES	7278																MKRN2 (ENSETEG00000003970) #22	RAF1 (ENSETEG00000003974) #23
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973.c.a.a ##27	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Hyrax	MODERN SPECIES	10043																MKRN2 (ENSPCAG00000016175) #22	RAF1 (ENSPCAG00000016080) #23
Elephant	MODERN SPECIES	49	IRAK2 (ENSLAFG00000002546)	TATDN2 (ENSLAFG00000028812)	GHRL (ENSLAFG00000014068)	SEC13 (ENSLAFG00000014598)	ATP2B2 (ENSLAFG00000014604)	SLC6A11 (ENSLAFG00000016494) #7	SLC6A1 (ENSLAFG00000022374) #8	HRH1 (ENSLAFG00000017128) #10	ATG7 (ENSLAFG00000017130) #11	VGLL4 (ENSLAFG00000017133) #12	TAMM41 (ENSLAFG00000011239) #13	TIMP4 (ENSLAFG00000004660) #15	SYN2 (ENSLAFG00000004657) #14	PPARG (ENSLAFG00000030870) #19	TSEN2 (ENSLAFG00000009300) #20	MKRN2 (ENSLAFG00000011601) #22	RAF1 (ENSLAFG00000011608) #23	TMEM40 (ENSLAFG00000010230) #24	CAND2 (ENSLAFG00000017706) #26	ENSLAFG00000032737 ##27	EFCAB12 (ENSLAFG00000010605)	MBD4 (ENSLAFG00000010609)	IFT122 (ENSLAFG00000010612)	RHO (ENSLAFG00000001359)	PLXND1 (ENSLAFG00000003012)	TMCC1 (ENSLAFG00000013730)	TRH (ENSLAFG00000015165)	RBSN (ENSLAFG00000004227)	MRPS25 (ENSLAFG00000022178)	NR2C2 (ENSLAFG00000010224)	FGD5 (ENSLAFG00000010491)
Xenarthra	ANCESTRAL SPECIES	662											ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017740.a.b #26
Sloth	MODERN SPECIES	7323																MKRN2 (ENSCHOG00000005438) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1334											SYN2 (ENSDNOG00000012852) #14	TIMP4 (ENSDNOG00000012868) #15	PPARG (ENSDNOG00000018641) #19	TSEN2 (ENSDNOG00000038504) #20	MKRN2OS (ENSDNOG00000042709) #21	ENSDNOG00000017476 #22	RAF1 (ENSDNOG00000009252) #23	CAND2 (ENSDNOG00000040049) #26
Armadillo	MODERN SPECIES	3990									ENSDNOG00000046250	ENSDNOG00000038909	ENSDNOG00000017670	ENSDNOG00000037191	ENSDNOG00000041414	ENSDNOG00000041622	ENSDNOG00000036350	ENSDNOG00000040494 #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973 #27	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Opossum	MODERN SPECIES	5	ENSMODG00000039480	SEC13 (ENSMODG00000005505)	ATP2B2 (ENSMODG00000005537)	SLC6A11 (ENSMODG00000005602) #7	SLC6A1 (ENSMODG00000005984) #8	HRH1 (ENSMODG00000006000) #10	ENSMODG00000006043	ATG7 (ENSMODG00000006136) #11	VGLL4 (ENSMODG00000006145) #12	ENSMODG00000006153 #13	SYN2 (ENSMODG00000006159) #14	TIMP4 (ENSMODG00000006199) #15	PPARG (ENSMODG00000006233) #19	TSEN2 (ENSMODG00000006249) #20	MKRN2OS (ENSMODG00000006265) #21	MKRN2 (ENSMODG00000006280) #22	RAF1 (ENSMODG00000006307) #23	ENSMODG00000025518 #24	CAND2 (ENSMODG00000006377) #26	RPL32 (ENSMODG00000037211) #27	ENSMODG00000006335	ENSMODG00000006399	ENSMODG00000042737	IFT122 (ENSMODG00000006462)	RHO (ENSMODG00000006488)	ENSMODG00000028422	PLXND1 (ENSMODG00000006963)	TMCC1 (ENSMODG00000006987)	ENSMODG00000044035	ENSMODG00000042057	ENSMODG00000028708
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973 #27	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973 #27	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
Wallaby	MODERN SPECIES	9824																MKRN2 (ENSMEUG00000004347) #22	RAF1 (ENSMEUG00000004360) #23
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000017530 #24	ENSGT00390000017740.a.b #26	ENSGT00940000153973 #27	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393
koala	MODERN SPECIES	10	GHRL (ENSPCIG00000021917)	ENSPCIG00000021918	ATP2B2 (ENSPCIG00000024350)	SLC6A11 (ENSPCIG00000011028) #7	SLC6A1 (ENSPCIG00000011049) #8	HRH1 (ENSPCIG00000011053) #10	ENSPCIG00000011056	ATG7 (ENSPCIG00000011062) #11	VGLL4 (ENSPCIG00000011097) #12	TAMM41 (ENSPCIG00000036857) #13	SYN2 (ENSPCIG00000002007) #14	TIMP4 (ENSPCIG00000002040) #15	PPARG (ENSPCIG00000002060) #19	TSEN2 (ENSPCIG00000002191) #20	MKRN2OS (ENSPCIG00000002201) #21	MKRN2 (ENSPCIG00000031653) #22	RAF1 (ENSPCIG00000009694) #23	TMEM40 (ENSPCIG00000002215) #24	CAND2 (ENSPCIG00000002229) #26	RPL32 (ENSPCIG00000036095) #27	ENSPCIG00000002263	ENSPCIG00000002276	ENSPCIG00000035263	IFT122 (ENSPCIG00000002304)	RHO (ENSPCIG00000002359)	PLXND1 (ENSPCIG00000002459)	TMCC1 (ENSPCIG00000002496)	ENSPCIG00000023527	RBSN (ENSPCIG00000023528)	ENSPCIG00000023530	NR2C2 (ENSPCIG00000023531)
Common wonbat	MODERN SPECIES	1012	GHRL (ENSVURG00010011569)	ENSVURG00010011601	SLC6A11 (ENSVURG00010011698) #7	ENSVURG00010011722	SLC6A1 (ENSVURG00010011767) #8	HRH1 (ENSVURG00010012968) #10	ATG7 (ENSVURG00010012989) #11	VGLL4 (ENSVURG00010013026) #12	TAMM41 (ENSVURG00010013046) #13	ENSVURG00010013071 #14	TIMP4 (ENSVURG00010013076) #15	ENSVURG00010013080 #14	PPARG (ENSVURG00010013093) #19	TSEN2 (ENSVURG00010013138) #20	MKRN2OS (ENSVURG00010013158) #21	MKRN2 (ENSVURG00010013169) #22	RAF1 (ENSVURG00010013196) #23	TMEM40 (ENSVURG00010013215) #24	CAND2 (ENSVURG00010013279) #26	ENSVURG00010014192 #27	ENSVURG00010014212	ENSVURG00010014225	IFT122 (ENSVURG00010014263)	RHO (ENSVURG00010014434)	PLXND1 (ENSVURG00010014456)	TMCC1 (ENSVURG00010014518)	RBSN (ENSVURG00010014533)	MRPS25 (ENSVURG00010014548)	NR2C2 (ENSVURG00010014575)	ENSVURG00010014858	FGD5 (ENSVURG00010014863)
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES		SEC13 (ENSSHAG00000016558)	ENSSHAG00000017272	SLC6A11 (ENSSHAG00000026964) #7	ENSSHAG00000018140 #8	HRH1 (ENSSHAG00000028397) #10	ATG7 (ENSSHAG00000022602) #11	ENSSHAG00000031478	ENSSHAG00000027506	ENSSHAG00000018702 #12	TAMM41 (ENSSHAG00000018802) #13	SYN2 (ENSSHAG00000006422) #14	TIMP4 (ENSSHAG00000006738) #15	PPARG (ENSSHAG00000008610) #19	TSEN2 (ENSSHAG00000010530) #20	MKRN2OS (ENSSHAG00000010787) #21	ENSSHAG00000011021 #22	RAF1 (ENSSHAG00000011099) #23	TMEM40 (ENSSHAG00000012194) #24	CAND2 (ENSSHAG00000012567) #26	ENSSHAG00000012782 #27	ENSSHAG00000012822	MBD4 (ENSSHAG00000012953)	IFT122 (ENSSHAG00000013078)	RHO (ENSSHAG00000013534)	ENSSHAG00000029482	PLXND1 (ENSSHAG00000013651)	TMCC1 (ENSSHAG00000014733)	ENSSHAG00000026312	ENSSHAG00000015988	NR2C2 (ENSSHAG00000016078)	ENSSHAG00000024996
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000018284	ENSSHAG00000018331	E2F8 (ENSSHAG00000018372)	ENSSHAG00000028087	ENSSHAG00000008439	DBX1 (ENSSHAG00000011774)	HTATIP2 (ENSSHAG00000028422)	PRMT3 (ENSSHAG00000012761)	SLC6A5 (ENSSHAG00000013820)	NELL1 (ENSSHAG00000030702)	ENSSHAG00000008387	ANO5 (ENSSHAG00000012452)	SLC17A6 (ENSSHAG00000031119)	ENSSHAG00000023873	GAS2 (ENSSHAG00000014709)	ENSSHAG00000015939 #22	LUZP2 (ENSSHAG00000023207)	ENSSHAG00000029103	ANO3 (ENSSHAG00000007618)	SLC5A12 (ENSSHAG00000009558)	FIBIN (ENSSHAG00000023983)	BBOX1 (ENSSHAG00000011451)	ENSSHAG00000012905	LGR4 (ENSSHAG00000013104)	LIN7C (ENSSHAG00000013710)	BDNF (ENSSHAG00000014528)	KIF18A (ENSSHAG00000015625)	ENSSHAG00000015956	KCNA4 (ENSSHAG00000031255)	FSHB (ENSSHAG00000009491)	ARL14EP (ENSSHAG00000025815)
Platypus	MODERN SPECIES	83			NAE1 (ENSOANG00000001061)	ENSOANG00000030932	ENSOANG00000032301	ENSOANG00000030783	ENSOANG00000029079	ENSOANG00000031931	CA7 (ENSOANG00000012209)	PDP2 (ENSOANG00000015274)	ENSOANG00000042386	RRAD (ENSOANG00000013935)	CIAO2B (ENSOANG00000045690)	ENSOANG00000011648 #20	MKRN2OS (ENSOANG00000039177) #21	MKRN2 (ENSOANG00000038817) #22	RAF1 (ENSOANG00000005684) #23	ENSOANG00000045625	ISY1 (ENSOANG00000013141)	PPARG (ENSOANG00000046286) #19	SYN2 (ENSOANG00000020050) #14	SEMA3G (ENSOANG00000013236)	LINGO3 (ENSOANG00000003705)	ENSOANG00000030064	OAZ1 (ENSOANG00000000654)	ENSOANG00000036300	DOT1L (ENSOANG00000010015)	ENSOANG00000050388	MOB3A (ENSOANG00000040976)	MKNK2 (ENSOANG00000048798)	ENSOANG00000036327
Sauria	ANCESTRAL SPECIES	13	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955
Cryptodira	ANCESTRAL SPECIES	41	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00390000011897	ENSGT00390000004860.nb	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955
Emydidae	ANCESTRAL SPECIES	9	ENSGT00390000011897	ENSGT00390000004860.nb	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
painted turtle	MODERN SPECIES	14	CENPP (ENSCPBG00000006781)	NOL8 (ENSCPBG00000006773)	IARS1 (ENSCPBG00000001174)	ENSCPBG00000000579	SLC6A11 (ENSCPBG00000000487) #7	ENSCPBG00000000450	SLC6A1 (ENSCPBG00000000431) #8	HRH1 (ENSCPBG00000000415) #10	ATG7 (ENSCPBG00000000334) #11	TAMM41 (ENSCPBG00000000254) #13	TIMP4 (ENSCPBG00000026368) #15	SYN2 (ENSCPBG00000026365) #14	PPARG (ENSCPBG00000026361) #19	TSEN2 (ENSCPBG00000026359) #20	MKRN2OS (ENSCPBG00000026357) #21	MKRN2 (ENSCPBG00000026356) #22	RAF1 (ENSCPBG00000026352) #23	ENSCPBG00000026349	ENSCPBG00000026348	ISY1 (ENSCPBG00000026346)	ENSCPBG00000026344	RAB43 (ENSCPBG00000026343)	ENSCPBG00000026342
Three-toed box turtle	MODERN SPECIES	107	ENSTMTG00000016992	ENSTMTG00000016954	IARS1 (ENSTMTG00000016725)	ENSTMTG00000016217	SLC6A11 (ENSTMTG00000016054) #7	SLC6A1 (ENSTMTG00000015874) #8	HRH1 (ENSTMTG00000015850) #10	ATG7 (ENSTMTG00000015759) #11	VGLL4 (ENSTMTG00000015729) #12	TAMM41 (ENSTMTG00000015707) #13	TIMP4 (ENSTMTG00000015688) #15	SYN2 (ENSTMTG00000015621) #14	PPARG (ENSTMTG00000015596) #19	TSEN2 (ENSTMTG00000015573) #20	ENSTMTG00000015561	MKRN2 (ENSTMTG00000015544) #22	RAF1 (ENSTMTG00000015520) #23	ENSTMTG00000015505	ISY1 (ENSTMTG00000015483)	ENSTMTG00000015448	RAB43 (ENSTMTG00000015431)	GP9 (ENSTMTG00000010971)	EFCC1 (ENSTMTG00000010945)	CFAP92 (ENSTMTG00000010898)	ACAD9 (ENSTMTG00000010840)	IQSEC1 (ENSTMTG00000010796) #28
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00390000011897	ENSGT00390000004860.nb.c	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.c.b	ENSGT00940000167251	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005015160	ENSGEVG00005015198	IARS1 (ENSGEVG00005015240)	ATP2B2 (ENSGEVG00005015471)	SLC6A11 (ENSGEVG00005017116) #7	SLC6A1 (ENSGEVG00005017316) #8	HRH1 (ENSGEVG00005017663) #10	ATG7 (ENSGEVG00005017701) #11	VGLL4 (ENSGEVG00005017769) #12	TAMM41 (ENSGEVG00005017797) #13	SYN2 (ENSGEVG00005017832) #14	TIMP4 (ENSGEVG00005017900) #15	PPARG (ENSGEVG00005017941) #19	TSEN2 (ENSGEVG00005017977) #20	MKRN2OS (ENSGEVG00005017994) #21	MKRN2 (ENSGEVG00005018003) #22	RAF1 (ENSGEVG00005018027) #23	ENSGEVG00005018078	ENSGEVG00005005307	ENSGEVG00005005367	ENSGEVG00005005430	RAB43 (ENSGEVG00005005485)	GP9 (ENSGEVG00005005510)	ENSGEVG00005005535	ENSGEVG00005005602	ACAD9 (ENSGEVG00005005630)	IQSEC1 (ENSGEVG00005005708) #28	NUP210 (ENSGEVG00005005766) #29	HDAC11 (ENSGEVG00005005930) #30	ENSGEVG00005005963	FBLN2 (ENSGEVG00005005981) #31
Abingdon island giant tortoise	MODERN SPECIES	252										TIMP4 (ENSCABG00000022127) #15	SYN2 (ENSCABG00000022126) #14	PPARG (ENSCABG00000022125) #19	ENSCABG00000022124	TSEN2 (ENSCABG00000022123) #20	ENSCABG00000022122	MKRN2 (ENSCABG00000022121) #22	RAF1 (ENSCABG00000022083) #23
Chinese turtle	MODERN SPECIES	660			ENSPSIG00000015446	ENSPSIG00000015328	ENSPSIG00000015319	USP4 (ENSPSIG00000014081)	HRH1 (ENSPSIG00000000512) #10	ATG7 (ENSPSIG00000012300) #11	VGLL4 (ENSPSIG00000012119) #12	TAMM41 (ENSPSIG00000012037) #13	TIMP4 (ENSPSIG00000011745) #15	SYN2 (ENSPSIG00000011238) #14	PPARG (ENSPSIG00000011100) #19	ENSPSIG00000010669 #20	MKRN2OS (ENSPSIG00000010665) #21	MKRN2 (ENSPSIG00000010483) #22	RAF1 (ENSPSIG00000009677) #23	ENSPSIG00000009556	ISY1 (ENSPSIG00000009384)
Archosauria	ANCESTRAL SPECIES	24	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955
Australian saltwater crocodile	MODERN SPECIES	37	OMD (ENSCPRG00005019193)	OGN (ENSCPRG00005019192)	IARS1 (ENSCPRG00005019188)	ENSCPRG00005019186	SLC6A11 (ENSCPRG00005019185) #7	SLC6A1 (ENSCPRG00005019184) #8	HRH1 (ENSCPRG00005019183) #10	ATG7 (ENSCPRG00005019181) #11	VGLL4 (ENSCPRG00005019180) #12	TAMM41 (ENSCPRG00005019178) #13	TIMP4 (ENSCPRG00005019177) #15	SYN2 (ENSCPRG00005019176) #14	PPARG (ENSCPRG00005019174) #19	TSEN2 (ENSCPRG00005019173) #20	MKRN2OS (ENSCPRG00005019172) #21	MKRN2 (ENSCPRG00005019171) #22	RAF1 (ENSCPRG00005019170) #23	ENSCPRG00005019169	ISY1 (ENSCPRG00005019167)	ENSCPRG00005019166	RAB43 (ENSCPRG00005019165)	ENSCPRG00005019163	GP9 (ENSCPRG00005019162)	ENSCPRG00005019161	CFAP92 (ENSCPRG00005019160)	ACAD9 (ENSCPRG00005019159)	IQSEC1 (ENSCPRG00005019158) #28	NUP210 (ENSCPRG00005019156) #29	HDAC11 (ENSCPRG00005019154) #30	FBLN2 (ENSCPRG00005019153) #31	WNT7A (ENSCPRG00005019151) #33
Aves	ANCESTRAL SPECIES	29	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00960000189495
African ostrich	MODERN SPECIES	1066	OGN (ENSSCUG00000014870)	NOL8 (ENSSCUG00000014881)	IARS1 (ENSSCUG00000014894)	ATP2B2 (ENSSCUG00000014930)	SLC6A11 (ENSSCUG00000014961) #7	SLC6A1 (ENSSCUG00000014975) #8	HRH1 (ENSSCUG00000014994) #10	ATG7 (ENSSCUG00000015003) #11	VGLL4 (ENSSCUG00000015010) #12	TAMM41 (ENSSCUG00000015017) #13	TIMP4 (ENSSCUG00000015038) #15	SYN2 (ENSSCUG00000015041) #14	PPARG (ENSSCUG00000015050) #19	TSEN2 (ENSSCUG00000015062) #20	MKRN2OS (ENSSCUG00000015069) #21	MKRN2 (ENSSCUG00000015071) #22	RAF1 (ENSSCUG00000015081) #23	ENSSCUG00000015086	ISY1 (ENSSCUG00000015087)	ENSSCUG00000015094	RAB43 (ENSSCUG00000015101)	GP9 (ENSSCUG00000015105)	CFAP92 (ENSSCUG00000015116)	ACAD9 (ENSSCUG00000015133)	NUP210 (ENSSCUG00000015147) #29	HDAC11 (ENSSCUG00000015163) #30	FBLN2 (ENSSCUG00000015170) #31	WNT7A (ENSSCUG00000015175) #33	ENSSCUG00000015181	PTPDC1 (ENSSCUG00000015185)	PHF2 (ENSSCUG00000015198)
Neognathae	ANCESTRAL SPECIES	27	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00960000189495
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00960000189495
Anatidae	ANCESTRAL SPECIES	54	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33
Pink-footed goose	MODERN SPECIES	110							HRH1 (ENSABRG00000009830) #10	ATG7 (ENSABRG00000009797) #11	VGLL4 (ENSABRG00000009786) #12	TAMM41 (ENSABRG00000009773) #13	TIMP4 (ENSABRG00000009748) #15	SYN2 (ENSABRG00000009741) #14	PPARG (ENSABRG00000009733) #19	TSEN2 (ENSABRG00000009724) #20	ENSABRG00000009722	MKRN2 (ENSABRG00000009708) #22	RAF1 (ENSABRG00000009695) #23	ENSABRG00000009679	ISY1 (ENSABRG00000009673)	ENSABRG00000009510	RAB43 (ENSABRG00000009489)	GP9 (ENSABRG00000009470)	EFCC1 (ENSABRG00000009460)	CFAP92 (ENSABRG00000009441)	ACAD9 (ENSABRG00000008890)	IQSEC1 (ENSABRG00000008262) #28	NUP210 (ENSABRG00000007910) #29	HDAC11 (ENSABRG00000007799) #30	FBLN2 (ENSABRG00000007418) #31	WNT7A (ENSABRG00000007393) #33	ENSABRG00000007383
Duck	MODERN SPECIES	4	ENSAPLG00000030112	ATP2B2 (ENSAPLG00000006083)	SLC6A11 (ENSAPLG00000006803) #7	SLC6A1 (ENSAPLG00000010815) #8	ENSAPLG00000024336	HRH1 (ENSAPLG00000011710) #10	ATG7 (ENSAPLG00000010216) #11	VGLL4 (ENSAPLG00000010053) #12	TAMM41 (ENSAPLG00000009828) #13	ENSAPLG00000028592	TIMP4 (ENSAPLG00000027938) #15	SYN2 (ENSAPLG00000009144) #14	PPARG (ENSAPLG00000009031) #19	ENSAPLG00000014992 #20	ENSAPLG00000017751	MKRN2 (ENSAPLG00000014833) #22	RAF1 (ENSAPLG00000014376) #23	ENSAPLG00000014227	ISY1 (ENSAPLG00000014136)	RAB43 (ENSAPLG00000026304)	GP9 (ENSAPLG00000001853)	ENSAPLG00000013971	ENSAPLG00000013916	ACAD9 (ENSAPLG00000013493)	IQSEC1 (ENSAPLG00000013323) #28	NUP210 (ENSAPLG00000012355) #29	HDAC11 (ENSAPLG00000012032) #30	FBLN2 (ENSAPLG00000014027) #31	WNT7A (ENSAPLG00000013876) #33	ENSAPLG00000026214	PTPDC1 (ENSAPLG00000013824)
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Chicken	MODERN SPECIES	3	NOL8 (ENSGALG00010027207)	ENSGALG00010028201	IARS1 (ENSGALG00010027218)	ATP2B2 (ENSGALG00010027231)	SLC6A11 (ENSGALG00010027234) #7	SLC6A1 (ENSGALG00010027240) #8	HRH1 (ENSGALG00010027243) #10	ATG7 (ENSGALG00010027247) #11	VGLL4 (ENSGALG00010027253) #12	TAMM41 (ENSGALG00010027263) #13	SYN2 (ENSGALG00010027905) #14	TIMP4 (ENSGALG00010027909) #15	PPARG (ENSGALG00010027917) #19	TSEN2 (ENSGALG00010027919) #20	MKRN2OS (ENSGALG00010027921) #21	MKRN2 (ENSGALG00010027925) #22	RAF1 (ENSGALG00010027930) #23	CNBP (ENSGALG00010027934)	ISY1 (ENSGALG00010027935)	ENSGALG00010027938	RAB43 (ENSGALG00010027943)	GP9 (ENSGALG00010027947)	ENSGALG00010027958	CFAP92 (ENSGALG00010027954)	ACAD9 (ENSGALG00010027965)	IQSEC1 (ENSGALG00010027975) #28	NUP210 (ENSGALG00010027980) #29	HDAC11 (ENSGALG00010027988) #30	FBLN2 (ENSGALG00010027649) #31	WNT7A (ENSGALG00010027653) #33	PTPDC1 (ENSGALG00010027667)
Turkey	MODERN SPECIES	5	NOL8 (ENSMGAG00000004495)	IARS1 (ENSMGAG00000004555)	ENSMGAG00000004661	SLC6A11 (ENSMGAG00000004717) #7	SLC6A1 (ENSMGAG00000004819) #8	HRH1 (ENSMGAG00000004868) #10	ATG7 (ENSMGAG00000004873) #11	ENSMGAG00000019207	VGLL4 (ENSMGAG00000004921) #12	TAMM41 (ENSMGAG00000004937) #13	ENSMGAG00000021149	SYN2 (ENSMGAG00000004944) #14	TIMP4 (ENSMGAG00000004964) #15	PPARG (ENSMGAG00000004981) #19	TSEN2 (ENSMGAG00000005015) #20	MKRN2 (ENSMGAG00000005057) #22	RAF1 (ENSMGAG00000005082) #23	ENSMGAG00000005152	ISY1 (ENSMGAG00000005181)	ENSMGAG00000005131	ENSMGAG00000005141	GP9 (ENSMGAG00000015506)	ENSMGAG00000005211	ACAD9 (ENSMGAG00000005216)	IQSEC1 (ENSMGAG00000005294) #28	NUP210 (ENSMGAG00000005324) #29	HDAC11 (ENSMGAG00000005351) #30	FBLN2 (ENSMGAG00000005381) #31	WNT7A (ENSMGAG00000005423) #33	PTPDC1 (ENSMGAG00000005445)	PHF2 (ENSMGAG00000005454)
Japanese quail	MODERN SPECIES	3	OMD (ENSCJPG00005012246)	OGN (ENSCJPG00005012247)	ENSCJPG00005012248	IARS1 (ENSCJPG00005012250)	ENSCJPG00005012303	SLC6A11 (ENSCJPG00005012307) #7	SLC6A1 (ENSCJPG00005012319) #8	HRH1 (ENSCJPG00005012860) #10	ATG7 (ENSCJPG00005012861) #11	VGLL4 (ENSCJPG00005012862) #12	TAMM41 (ENSCJPG00005012865) #13	SYN2 (ENSCJPG00005012866) #14	TIMP4 (ENSCJPG00005012867) #15	PPARG (ENSCJPG00005012868) #19	TSEN2 (ENSCJPG00005012869) #20	MKRN2 (ENSCJPG00005012870) #22	MKRN2OS (ENSCJPG00005012871) #21	RAF1 (ENSCJPG00005012872) #23	ENSCJPG00005012873	ISY1 (ENSCJPG00005012874)	ENSCJPG00005012875	RAB43 (ENSCJPG00005012876)	GP9 (ENSCJPG00005012877)	ENSCJPG00005012878	ENSCJPG00005012879	ACAD9 (ENSCJPG00005012880)	IQSEC1 (ENSCJPG00005012881) #28	NUP210 (ENSCJPG00005012882) #29	HDAC11 (ENSCJPG00005012883) #30	FBLN2 (ENSCJPG00005012884) #31	WNT7A (ENSCJPG00005012887) #33
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113	ENSGT00940000160218
Great tit	DUPLICATION
Great tit	MODERN SPECIES	4	ADAMTS2 (ENSPMJG00000008215)	RUFY1 (ENSPMJG00000008200)	ENSPMJG00000008198	ENSPMJG00000008197	ENSPMJG00000008196	CANX (ENSPMJG00000008194)	MAML1 (ENSPMJG00000008193)	ENSPMJG00000008192	MGAT4B (ENSPMJG00000008191)	SQSTM1 (ENSPMJG00000008190)	ENSPMJG00000008189	TBC1D9B (ENSPMJG00000008188)	RNF130 (ENSPMJG00000008163)	FLT4 (ENSPMJG00000008144)	ENSPMJG00000008142	ENSPMJG00000008140 #22	HMGXB3 (ENSPMJG00000008137)	CSF1R (ENSPMJG00000008134)	PDGFRB (ENSPMJG00000008128)	ENSPMJG00000008125	SLC6A7 (ENSPMJG00000008124)	ENSPMJG00000008123	ARSI (ENSPMJG00000008122)	ENSPMJG00000008121	CD74 (ENSPMJG00000008120)	RPS14 (ENSPMJG00000008117)	NDST1 (ENSPMJG00000008113)	SYNPO (ENSPMJG00000008111)	MYOZ3 (ENSPMJG00000008108)	RBM22 (ENSPMJG00000008107)	DCTN4 (ENSPMJG00000008104)
Great tit	MODERN SPECIES	3	PTPDC1 (ENSPMJG00000004327)	IARS1 (ENSPMJG00000004334)	ATP2B2 (ENSPMJG00000004350)	SLC6A11 (ENSPMJG00000004374) #7	SLC6A1 (ENSPMJG00000004995) #8	HRH1 (ENSPMJG00000005006) #10	ATG7 (ENSPMJG00000005007) #11	VGLL4 (ENSPMJG00000005038) #12	TAMM41 (ENSPMJG00000005039) #13	ENSPMJG00000005042 #14	TIMP4 (ENSPMJG00000005043) #15	ENSPMJG00000005053 #14	PPARG (ENSPMJG00000005054) #19	TSEN2 (ENSPMJG00000005055) #20	MKRN2OS (ENSPMJG00000005056) #21	ENSPMJG00000005058 #22	RAF1 (ENSPMJG00000005061) #23	ENSPMJG00000005065	ENSPMJG00000005069	ISY1 (ENSPMJG00000005074)	ENSPMJG00000005079	RAB43 (ENSPMJG00000005081)	GP9 (ENSPMJG00000005082)	ENSPMJG00000005084	ENSPMJG00000005086	ENSPMJG00000005087	CENPP (ENSPMJG00000005088)	OGN (ENSPMJG00000005089)	OMD (ENSPMJG00000005090)	ASPN (ENSPMJG00000005091)	ECM2 (ENSPMJG00000005093)
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Flycatcher	MODERN SPECIES	3	ENSFALG00000009075	ENSFALG00000023030	IARS1 (ENSFALG00000010261)	ENSFALG00000000003	ENSFALG00000028800	SLC6A11 (ENSFALG00000000004) #7	SLC6A1 (ENSFALG00000000005) #8	HRH1 (ENSFALG00000014152) #10	ATG7 (ENSFALG00000000006) #11	VGLL4 (ENSFALG00000000007) #12	TAMM41 (ENSFALG00000000008) #13	TIMP4 (ENSFALG00000023921) #15	SYN2 (ENSFALG00000000009) #14	PPARG (ENSFALG00000028484) #19	TSEN2 (ENSFALG00000000012) #20	MKRN2 (ENSFALG00000000015) #22	RAF1 (ENSFALG00000000018) #23	ENSFALG00000014288	ENSFALG00000025948	ENSFALG00000000023	ENSFALG00000000024	ENSFALG00000028736	ENSFALG00000000026	ENSFALG00000000031	IQSEC1 (ENSFALG00000000034) #28	NUP210 (ENSFALG00000000036) #29	HDAC11 (ENSFALG00000023220) #30	ENSFALG00000026076	FBLN2 (ENSFALG00000009172) #31	ENSFALG00000026079	WNT7A (ENSFALG00000024842) #33
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Zebra finch	MODERN SPECIES	3	IARS1 (ENSTGUG00000004410)	ATP2B2 (ENSTGUG00000004296)	SLC6A11 (ENSTGUG00000004225) #7	SLC6A1 (ENSTGUG00000004182) #8	HRH1 (ENSTGUG00000004180) #10	ATG7 (ENSTGUG00000004145) #11	VGLL4 (ENSTGUG00000004136) #12	TAMM41 (ENSTGUG00000004121) #13	SYN2 (ENSTGUG00000004093) #14	ENSTGUG00000025121	TIMP4 (ENSTGUG00000019602) #15	PPARG (ENSTGUG00000004069) #19	ENSTGUG00000025620	TSEN2 (ENSTGUG00000004044) #20	MKRN2OS (ENSTGUG00000028016) #21	MKRN2 (ENSTGUG00000004017) #22	RAF1 (ENSTGUG00000004006) #23	ENSTGUG00000004001	ENSTGUG00000003998	ENSTGUG00000003984	RAB43 (ENSTGUG00000021700)	GP9 (ENSTGUG00000003978)	ENSTGUG00000023307	ACAD9 (ENSTGUG00000003909)	IQSEC1 (ENSTGUG00000003876) #28	ENSTGUG00000003823 #29	ENSTGUG00000003803 #30	FBLN2 (ENSTGUG00000003758) #31	ENSTGUG00000022371	WNT7A (ENSTGUG00000003752) #33	PTPDC1 (ENSTGUG00000003741)
Common canary	MODERN SPECIES	15	CENPP (ENSSCAG00000012700)	ENSSCAG00000012697	IARS1 (ENSSCAG00000012686)	ATP2B2 (ENSSCAG00000012674)	SLC6A11 (ENSSCAG00000012356) #7	SLC6A1 (ENSSCAG00000011359) #8	HRH1 (ENSSCAG00000011131) #10	ATG7 (ENSSCAG00000011122) #11	VGLL4 (ENSSCAG00000011116) #12	TAMM41 (ENSSCAG00000011113) #13	TIMP4 (ENSSCAG00000011112) #15	SYN2 (ENSSCAG00000011108) #14	PPARG (ENSSCAG00000011103) #19	TSEN2 (ENSSCAG00000011099) #20	MKRN2OS (ENSSCAG00000011095) #21	MKRN2 (ENSSCAG00000011091) #22	RAF1 (ENSSCAG00000011068) #23	ENSSCAG00000011058	ENSSCAG00000011053	ISY1 (ENSSCAG00000011046)	ENSSCAG00000010990	RAB43 (ENSSCAG00000010955)	GP9 (ENSSCAG00000010953)	ENSSCAG00000010950	ENSSCAG00000010945	ENSSCAG00000010943	ACAD9 (ENSSCAG00000010788)	IQSEC1 (ENSSCAG00000010741) #28	NUP210 (ENSSCAG00000010702) #29	HDAC11 (ENSSCAG00000010687) #30	FBLN2 (ENSSCAG00000010640) #31
Medium ground finch	MODERN SPECIES	321													SYN2 (ENSGFOG00000010635) #14	PPARG (ENSGFOG00000010112) #19	TSEN2 (ENSGFOG00000009700) #20	MKRN2 (ENSGFOG00000010465) #22	RAF1 (ENSGFOG00000010417) #23	ENSGFOG00000010404	ENSGFOG00000010397	ENSGFOG00000010387	ENSGFOG00000010368	RAB43 (ENSGFOG00000010361)	GP9 (ENSGFOG00000010358)
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00390000004113
Golden eagle	MODERN SPECIES	12	ENSACCG00020010204	ENSACCG00020010173	IARS1 (ENSACCG00020010143)	ATP2B2 (ENSACCG00020010108)	SLC6A11 (ENSACCG00020010066) #7	SLC6A1 (ENSACCG00020010053) #8	HRH1 (ENSACCG00020010042) #10	ATG7 (ENSACCG00020010015) #11	VGLL4 (ENSACCG00020009982) #12	TAMM41 (ENSACCG00020009963) #13	TIMP4 (ENSACCG00020009945) #15	SYN2 (ENSACCG00020009920) #14	PPARG (ENSACCG00020009885) #19	TSEN2 (ENSACCG00020009874) #20	MKRN2OS (ENSACCG00020009863) #21	MKRN2 (ENSACCG00020009843) #22	RAF1 (ENSACCG00020009762) #23	ENSACCG00020009718	ISY1 (ENSACCG00020009699)	ENSACCG00020009638	RAB43 (ENSACCG00020009539)	GP9 (ENSACCG00020009526)	ENSACCG00020009517	CFAP92 (ENSACCG00020009502)	ACAD9 (ENSACCG00020009474)	IQSEC1 (ENSACCG00020009446) #28	NUP210 (ENSACCG00020009416) #29	HDAC11 (ENSACCG00020009388) #30	FBLN2 (ENSACCG00020009352) #31	WNT7A (ENSACCG00020011302) #33	PTPDC1 (ENSACCG00020011283)
Kakapo	MODERN SPECIES	3	ENSSHBG00005010656	ENSSHBG00005010633	IARS1 (ENSSHBG00005009904)	ATP2B2 (ENSSHBG00005009663)	SLC6A11 (ENSSHBG00005009639) #7	SLC6A1 (ENSSHBG00005009619) #8	HRH1 (ENSSHBG00005009603) #10	ATG7 (ENSSHBG00005008229) #11	VGLL4 (ENSSHBG00005008062) #12	TAMM41 (ENSSHBG00005008045) #13	TIMP4 (ENSSHBG00005008034) #15	SYN2 (ENSSHBG00005008017) #14	PPARG (ENSSHBG00005008004) #19	TSEN2 (ENSSHBG00005007982) #20	MKRN2OS (ENSSHBG00005007967) #21	MKRN2 (ENSSHBG00005007960) #22	RAF1 (ENSSHBG00005007932) #23	ENSSHBG00005007914	ISY1 (ENSSHBG00005007896)	ENSSHBG00005007853	RAB43 (ENSSHBG00005007820)	GP9 (ENSSHBG00005007812)	ENSSHBG00005007802	CFAP92 (ENSSHBG00005007781)	ACAD9 (ENSSHBG00005007759)	IQSEC1 (ENSSHBG00005007655) #28	NUP210 (ENSSHBG00005007487) #29	HDAC11 (ENSSHBG00005007414) #30	ENSSHBG00005007405	FBLN2 (ENSSHBG00005007366) #31	WNT7A (ENSSHBG00005007337) #33
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
tuatara	MODERN SPECIES	1318										TAMM41 (ENSSPUG00000018148) #13	TIMP4 (ENSSPUG00000018140) #15	SYN2 (ENSSPUG00000018134) #14	PPARG (ENSSPUG00000018117) #19	TSEN2 (ENSSPUG00000018099) #20	MKRN2OS (ENSSPUG00000018090) #21	MKRN2 (ENSSPUG00000018086) #22	RAF1 (ENSSPUG00000018074) #23	ENSSPUG00000018059	ISY1 (ENSSPUG00000018050)	ENSSPUG00000017987	RAB43 (ENSSPUG00000017960)	PREX1 (ENSSPUG00000017929)
Episquamata	ANCESTRAL SPECIES	4	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
Laterata	ANCESTRAL SPECIES	1	ENSGT00390000004860.gb	ENSGT00390000004860.fb	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000012475	ATP2B2 (ENSPMRG00000012496)	SLC6A11 (ENSPMRG00000012549) #7	SLC6A1 (ENSPMRG00000012556) #8	ENSPMRG00000012565	HRH1 (ENSPMRG00000012568) #10	ATG7 (ENSPMRG00000012572) #11	VGLL4 (ENSPMRG00000012585) #12	TAMM41 (ENSPMRG00000012590) #13	SYN2 (ENSPMRG00000012608) #14	TIMP4 (ENSPMRG00000012664) #15	ENSPMRG00000012669	PPARG (ENSPMRG00000012674) #19	TSEN2 (ENSPMRG00000012682) #20	MKRN2OS (ENSPMRG00000012689) #21	MKRN2 (ENSPMRG00000012692) #22	RAF1 (ENSPMRG00000012698) #23	ENSPMRG00000012709	ISY1 (ENSPMRG00000012711)	ENSPMRG00000012718	RAB43 (ENSPMRG00000012725)	ENSPMRG00000012727	GP9 (ENSPMRG00000012730)	ENSPMRG00000012736	ENSPMRG00000012740	EFCC1 (ENSPMRG00000012744)	CFAP92 (ENSPMRG00000012752)	ACAD9 (ENSPMRG00000012761)	IQSEC1 (ENSPMRG00000012774) #28	NUP210 (ENSPMRG00000012830) #29	FBLN2 (ENSPMRG00000013185) #31
Argentine black and white tegu	MODERN SPECIES	8	ENSSMRG00000014853	RPL29 (ENSSMRG00000014854)	IARS1 (ENSSMRG00000014856)	ENSSMRG00000014887	SLC6A11 (ENSSMRG00000019567) #7	SLC6A1 (ENSSMRG00000019568) #8	HRH1 (ENSSMRG00000019569) #10	ATG7 (ENSSMRG00000019571) #11	VGLL4 (ENSSMRG00000019572) #12	TAMM41 (ENSSMRG00000019573) #13	SYN2 (ENSSMRG00000019575) #14	TIMP4 (ENSSMRG00000019576) #15	PPARG (ENSSMRG00000019578) #19	TSEN2 (ENSSMRG00000019579) #20	MKRN2OS (ENSSMRG00000019580) #21	MKRN2 (ENSSMRG00000019581) #22	RAF1 (ENSSMRG00000019582) #23	ENSSMRG00000019583	ISY1 (ENSSMRG00000019584)	ENSSMRG00000019585	RAB43 (ENSSMRG00000019586)	ENSSMRG00000019587	GP9 (ENSSMRG00000019588)	ENSSMRG00000019589	ENSSMRG00000019590	ACAD9 (ENSSMRG00000019591)	IQSEC1 (ENSSMRG00000019592) #28	NUP210 (ENSSMRG00000019594) #29	FBLN2 (ENSSMRG00000019596) #31	ENSSMRG00000019598	WNT7A (ENSSMRG00000019599) #33
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062.k #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
Indian cobra	MODERN SPECIES	1	ENSNNAG00000000435	IARS1 (ENSNNAG00000018371)	ENSNNAG00000018337	ATP2B2 (ENSNNAG00000018213)	SLC6A11 (ENSNNAG00000018147) #7	SLC6A1 (ENSNNAG00000018109) #8	HRH1 (ENSNNAG00000018100) #10	ATG7 (ENSNNAG00000018034) #11	VGLL4 (ENSNNAG00000018012) #12	TAMM41 (ENSNNAG00000018006) #13	ENSNNAG00000018001 #15	SYN2 (ENSNNAG00000017991) #14	PPARG (ENSNNAG00000017984) #19	TSEN2 (ENSNNAG00000017971) #20	MKRN2OS (ENSNNAG00000017966) #21	MKRN2 (ENSNNAG00000017961) #22	RAF1 (ENSNNAG00000017955) #23	ENSNNAG00000017950	ENSNNAG00000017946	ISY1 (ENSNNAG00000017943)	ENSNNAG00000017924	RAB43 (ENSNNAG00000017921)	ENSNNAG00000017919	ENSNNAG00000017916	EFCC1 (ENSNNAG00000017915)	CFAP92 (ENSNNAG00000017912)	ACAD9 (ENSNNAG00000017867)	IQSEC1 (ENSNNAG00000017851) #28	NUP210 (ENSNNAG00000017830) #29	ENSNNAG00000017810	FBLN2 (ENSNNAG00000017789) #31
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062.k #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062.k #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156047 #31	ENSGT00940000158523 #33	ENSGT00940000162955	ENSGT00960000189495
Mainland tiger snake	MODERN SPECIES	2												ENSNSUG00000020113 #14	PPARG (ENSNSUG00000020114) #19	TSEN2 (ENSNSUG00000020115) #20	ENSNSUG00000020116	MKRN2 (ENSNSUG00000020117) #22	RAF1 (ENSNSUG00000020119) #23	ENSNSUG00000020120	ISY1 (ENSNSUG00000020121)	ENSNSUG00000020122	RAB43 (ENSNSUG00000020123)	ENSNSUG00000020124	GP9 (ENSNSUG00000020125)	ENSNSUG00000020128	ACAD9 (ENSNSUG00000020129)	IQSEC1 (ENSNSUG00000020130) #28	ENSNSUG00000020131	NUP210 (ENSNSUG00000020136) #29	FBLN2 (ENSNSUG00000020149) #31	WNT7A (ENSNSUG00000020150) #33	ENSNSUG00000020151
Eastern brown snake	MODERN SPECIES	3	OGN (ENSPTXG00000009501)	NOL8 (ENSPTXG00000009500)	IARS1 (ENSPTXG00000009498)	ATP2B2 (ENSPTXG00000007129)	SLC6A11 (ENSPTXG00000007128) #7	SLC6A1 (ENSPTXG00000007090) #8	HRH1 (ENSPTXG00000007087) #10	ATG7 (ENSPTXG00000007086) #11	VGLL4 (ENSPTXG00000007085) #12	TAMM41 (ENSPTXG00000007075) #13	ENSPTXG00000007073 #15	SYN2 (ENSPTXG00000007068) #14	PPARG (ENSPTXG00000007067) #19	TSEN2 (ENSPTXG00000007066) #20	MKRN2OS (ENSPTXG00000007065) #21	MKRN2 (ENSPTXG00000007064) #22	RAF1 (ENSPTXG00000007063) #23	ENSPTXG00000007062	ISY1 (ENSPTXG00000007061)	ENSPTXG00000007055	RAB43 (ENSPTXG00000007054)	ENSPTXG00000007053	GP9 (ENSPTXG00000007052)	EFCC1 (ENSPTXG00000007051)	CFAP92 (ENSPTXG00000007050)	ACAD9 (ENSPTXG00000007049)	IQSEC1 (ENSPTXG00000006860) #28	NUP210 (ENSPTXG00000006850) #29	FBLN2 (ENSPTXG00000006820) #31	WNT7A (ENSPTXG00000006810) #33	ENSPTXG00000006808
Blue-lipped sea krait	MODERN SPECIES	9066																MKRN2 (ENSLLTG00000012312) #22	RAF1 (ENSLLTG00000012297) #23
Lizard	MODERN SPECIES	1	SLC6A1 (ENSACAG00000010020) #8	ENSACAG00000035306	ENSACAG00000036621	ENSACAG00000043799	HRH1 (ENSACAG00000010219) #10	ATG7 (ENSACAG00000010224) #11	VGLL4 (ENSACAG00000010299) #12	TAMM41 (ENSACAG00000010318) #13	SYN2 (ENSACAG00000013404) #14	ENSACAG00000028862	TIMP4 (ENSACAG00000013457) #15	PPARG (ENSACAG00000013360) #19	TSEN2 (ENSACAG00000013345) #20	MKRN2OS (ENSACAG00000029532) #21	RAF1 (ENSACAG00000013194) #23	MKRN2 (ENSACAG00000013310) #22	ENSACAG00000038503	ISY1 (ENSACAG00000013166)	ENSACAG00000013142	ENSACAG00000013126	ENSACAG00000013124	GP9 (ENSACAG00000022777)	ENSACAG00000013121	ENSACAG00000013119	ACAD9 (ENSACAG00000012998)	ENSACAG00000012926 #28	ENSACAG00000045372	ENSACAG00000043082	ENSACAG00000043115	ENSACAG00000044780	ENSACAG00000036925
Anura	ANCESTRAL SPECIES	338													ENSGT00390000014109	ENSGT00390000013266 #20	ENSGT00390000003839 #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A
Leishan spiny toad	MODERN SPECIES	11	SLC25A6 (ENSLLEG00000028913)	ENSLLEG00000028726	ENSLLEG00000028682	ENSLLEG00000028673	IVNS1ABP (ENSLLEG00000028612)	GLRX2 (ENSLLEG00000028565)	CDC73 (ENSLLEG00000028448)	ENSLLEG00000028405	MITF (ENSLLEG00000028151)	ENSLLEG00000028107	RAB43 (ENSLLEG00000028054)	ENSLLEG00000028000	ISY1 (ENSLLEG00000027932)	ENSLLEG00000027826 #20	MKRN2OS (ENSLLEG00000027800) #21	MKRN2 (ENSLLEG00000027692) #22	ENSLLEG00000027659	RAF1 (ENSLLEG00000027363) #23	ENSLLEG00000027044	ARL6IP5 (ENSLLEG00000026982)	LMOD3 (ENSLLEG00000026945)	ENSLLEG00000026927	FRMD4B (ENSLLEG00000026638)	ENSLLEG00000026610	ENSLLEG00000026565	ENSLLEG00000026482	GP9 (ENSLLEG00000026438)	ENSLLEG00000026375	ENSLLEG00000026113	ACAD9 (ENSLLEG00000025523)	IQSEC1 (ENSLLEG00000024615) #28
Frog	MODERN SPECIES	4			STAB1 (ENSXETG00000044486)	NT5DC2 (ENSXETG00000047019)	pbrm1 (ENSXETG00000013671)	ENSXETG00000043218	ENSXETG00000049370	glt8d1 (ENSXETG00000042897)	spcs1 (ENSXETG00000013668)	gnl3 (ENSXETG00000013669)	nek4 (ENSXETG00000006888)	ENSXETG00000046560	itih3 (ENSXETG00000006887)	ENSXETG00000042890	mkrn2os (ENSXETG00000041950) #21	mkrn2 (ENSXETG00000043301) #22	raf1 (ENSXETG00000020163) #23	pparg (ENSXETG00000017422) #19	ENSXETG00000038805	ENSXETG00000042389	ENSXETG00000043200	ENSXETG00000045029	nisch (ENSXETG00000021467)	uqcrc1 (ENSXETG00000021470)	ENSXETG00000045653	ENSXETG00000045682	ENSXETG00000049123	XB5944457 [provisional] (ENSXETG00000012105) #8	ENSXETG00000041612	ENSXETG00000024197 #7	wnt7a (ENSXETG00000042176) #33
Coelacanth	MODERN SPECIES	1258											ENSLACG00000011638 #14	TIMP4 (ENSLACG00000010983) #15	ENSLACG00000010251 #14	PPARG (ENSLACG00000009212) #19	TSEN2 (ENSLACG00000008466) #20	MKRN2 (ENSLACG00000007834) #22	RAF1 (ENSLACG00000007082) #23	ENSLACG00000006992	cnbpb (ENSLACG00000005327)	ISY1 (ENSLACG00000004490)	zgc:77375 (ENSLACG00000003572)	RAB43 (ENSLACG00000002676)	ENSLACG00000000602
Actinopterygii	ANCESTRAL SPECIES	14	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000156062 #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31
Neopterygii	ANCESTRAL SPECIES	38	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027 #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062 #14	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #28	ENSGT00390000009491.d #29	ENSGT00940000156308 #30	ENSGT00940000156047 #31
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000156062.m #14	ENSGT00940000159798 #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.b	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00990000205530	ENSGT00940000157312	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000183077.a.b.o #22
P. kingsleyae	MODERN SPECIES	1429																mkrn2 (ENSPKIG00000024352) #22
Osteoglossiformes	ANCESTRAL SPECIES	57	ENSGT00550000074921	ENSGT00940000166500.k	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000159798.a.b #15	ENSGT00940000156062.m #14	ENSGT00940000159798.b #15	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b.p #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.b	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a #31	ENSGT00940000158523.d #33	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b
P. kingsleyae	MODERN SPECIES	60	iars1 (ENSPKIG00000025011)	ENSPKIG00000024988	atp2b2 (ENSPKIG00000024938)	SLC6A11 (ENSPKIG00000024908) #7	slc6a1b (ENSPKIG00000024901) #8	HRH1 (ENSPKIG00000024898) #10	ATG7 (ENSPKIG00000024886) #11	vgll4b (ENSPKIG00000024872) #12	tamm41 (ENSPKIG00000024860) #13	TIMP4 (ENSPKIG00000024854) #15	SYN2 (ENSPKIG00000024841) #14	PPARG (ENSPKIG00000024820) #19	tsen2 (ENSPKIG00000024801) #20	MKRN2OS (ENSPKIG00000024791) #21	ENSPKIG00000024788 #21	MKRN2 (ENSPKIG00000024724) #22	raf1b (ENSPKIG00000024636) #23	cnbpb (ENSPKIG00000024603)	isy1 (ENSPKIG00000024592)	ENSPKIG00000024576	rab43 (ENSPKIG00000024563)	nuf2 (ENSPKIG00000024545)	ENSPKIG00000024532	ENSPKIG00000024519	ENSPKIG00000024509	ENSPKIG00000024498	ENSPKIG00000024490	ENSPKIG00000024482	TULP1 (ENSPKIG00000024476)	TEAD3 (ENSPKIG00000024423)	ENSPKIG00000024382
Asian bonytongue	MODERN SPECIES	14	iars1 (ENSSFOG00015001874)	atp2b2 (ENSSFOG00015001733)	SLC6A11 (ENSSFOG00015001655) #7	slc6a1b (ENSSFOG00015001593) #8	HRH1 (ENSSFOG00015001587) #10	ATG7 (ENSSFOG00015001550) #11	vgll4b (ENSSFOG00015027191) #12	tamm41 (ENSSFOG00015001457) #13	SYN2 (ENSSFOG00015001391) #14	TIMP4 (ENSSFOG00015029651) #15	PPARG (ENSSFOG00015001328) #19	ENSSFOG00015001374	tsen2 (ENSSFOG00015001309) #20	ENSSFOG00015001275	ENSSFOG00015001244	mkrn2 (ENSSFOG00015001191) #22	raf1b (ENSSFOG00015001166) #23	cnbpb (ENSSFOG00015031332)	isy1 (ENSSFOG00015001127)	ENSSFOG00015001099	rab43 (ENSSFOG00015032863)	nuf2 (ENSSFOG00015001011)	ENSSFOG00015000953	ENSSFOG00015000944	acad9 (ENSSFOG00015000925)	IQSEC1 (ENSSFOG00015014615) #28	ENSSFOG00015024488	hdac11 (ENSSFOG00015025218) #30	FBLN2 (ENSSFOG00015014730) #31	WNT7A (ENSSFOG00015014849) #33	ptpdc1a (ENSSFOG00015014883)
Clupeocephala	ANCESTRAL SPECIES	20	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000156062.m #14	ENSGT00940000159798 #15	ENSGT00940000167517	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199
Otophysi	ANCESTRAL SPECIES	247	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062.m #14	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897
Channel catfish	MODERN SPECIES	13	gdf11 (ENSIPUG00000012483)	iars (ENSIPUG00000012333)	atp2b2 (ENSIPUG00000012098)	slc6a11 (ENSIPUG00000012021) #7	slc6a1 (ENSIPUG00000011974) #8	hrh1 (ENSIPUG00000011966) #10	atg7 (ENSIPUG00000011898) #11	vgll4 (ENSIPUG00000011872) #12	tamm41 (ENSIPUG00000011765) #13	timp4 (ENSIPUG00000011732) #15	syn2 (ENSIPUG00000011716)	PPARG (ENSIPUG00000011668) #19	tsen2 (ENSIPUG00000011651) #20	MKRN2OS (ENSIPUG00000011647) #21	ENSIPUG00000011635 #21	mkrn2 (ENSIPUG00000011589) #22	raf1 (ENSIPUG00000011435) #23	ENSIPUG00000011418	Isy1 (ENSIPUG00000011379)	zgc:77375 (ENSIPUG00000011342)	RAB43 (ENSIPUG00000011323)	nuf2 (ENSIPUG00000011256)	shisa5 (ENSIPUG00000011229)	atrip (ENSIPUG00000011138)	si:dkey-42i9.4 (ENSIPUG00000011123)	ippk (ENSIPUG00000011110)	ecm2 (ENSIPUG00000011082)	aspn (ENSIPUG00000011058)	OMD (ENSIPUG00000011045)	ogn (ENSIPUG00000011040)	cenpp (ENSIPUG00000010997)
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000156062.m #14	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860
Characoidei	ANCESTRAL SPECIES	38	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166043	ENSGT00390000002944	ENSGT00940000159517	ENSGT00950000183188.A.a.a	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000159798 #15	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a
Red-bellied piranha	MODERN SPECIES	103	atp2b2 (ENSPNAG00000008513)	iars1 (ENSPNAG00000008441)	gdf11 (ENSPNAG00000008415)	sarnp (ENSPNAG00000000975)	cdk2 (ENSPNAG00000008407)	pmela (ENSPNAG00000008382)	MMP19 (ENSPNAG00000000896)	ENSPNAG00000000887	timeless (ENSPNAG00000008298)	syn2b (ENSPNAG00000000793)	timp4.3 (ENSPNAG00000008221) #15	PPARG (ENSPNAG00000008214) #19	tsen2 (ENSPNAG00000008203) #20	MKRN2OS (ENSPNAG00000008194) #21	ENSPNAG00000000758 #21	mkrn2 (ENSPNAG00000008184) #22	raf1b (ENSPNAG00000008167) #23	ENSPNAG00000008143	isy1 (ENSPNAG00000000703)	zgc:77375 (ENSPNAG00000008127)	rab43 (ENSPNAG00000000692)	nuf2 (ENSPNAG00000000683)	shisa10.1 (ENSPNAG00000000671)	atrip (ENSPNAG00000008094)	si:dkey-42i9.4 (ENSPNAG00000008076)	ippk (ENSPNAG00000008073)	cenpp (ENSPNAG00000000629)	ECM2 (ENSPNAG00000008055)	aspn (ENSPNAG00000008046)	OMD (ENSPNAG00000006585)	ogna (ENSPNAG00000029996)
Mexicana tetra	MODERN SPECIES	14	ENSAMXG00000041363	iars1 (ENSAMXG00000036265)	gdf11 (ENSAMXG00000039058)	sarnp (ENSAMXG00000004834)	cdk2 (ENSAMXG00000030741)	pmela (ENSAMXG00000006095)	MMP19 (ENSAMXG00000006031)	ENSAMXG00000036008	timeless (ENSAMXG00000005979)	timp4.3 (ENSAMXG00000042051) #15	syn2b (ENSAMXG00000032883)	PPARG (ENSAMXG00000043041) #19	tsen2 (ENSAMXG00000043484) #20	MKRN2OS (ENSAMXG00000005712) #21	ENSAMXG00000038911 #21	mkrn2 (ENSAMXG00000005535) #22	raf1b (ENSAMXG00000005440) #23	ENSAMXG00000005433	isy1 (ENSAMXG00000005423)	zgc:77375 (ENSAMXG00000029468)	rab43 (ENSAMXG00000032172)	nuf2 (ENSAMXG00000005348)	shisa10.1 (ENSAMXG00000039145)	atrip (ENSAMXG00000005302)	si:dkey-42i9.4 (ENSAMXG00000005289)	ENSAMXG00000041795	ippk (ENSAMXG00000033401)	ENSAMXG00000034242	grm2b (ENSAMXG00000006790)	rrp9 (ENSAMXG00000006788)	ENSAMXG00000032725
Electric eel	MODERN SPECIES	753								vgll4b (ENSEEEG00000014673) #12	tamm41 (ENSEEEG00000014672) #13	timp4.3 (ENSEEEG00000014670) #15	SYN2 (ENSEEEG00000014669) #14	ENSEEEG00000014668	PPARG (ENSEEEG00000014631) #19	tsen2 (ENSEEEG00000014628) #20	MKRN2OS (ENSEEEG00000014625) #21	mkrn2 (ENSEEEG00000014624) #22
Cyprinoidei	ANCESTRAL SPECIES	131	ENSGT00940000166500	ENSGT00940000157569.l #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000156062.m #14	ENSGT00940000159798.g #15	ENSGT00940000159798.h #15	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980.i.a	ENSGT00390000004199
Cyprininae	ANCESTRAL SPECIES	504	ENSGT00940000166500.a	ENSGT00940000157569.l.a #7	ENSGT00940000156027.b.a #8	ENSGT00940000160690 #10	ENSGT00390000017509.b #11	ENSGT00390000003282.B.f.d #12	ENSGT00390000000616 #13	ENSGT00390000017509.a #11	ENSGT00390000003282.B.f.c #12	ENSGT00940000156062.m #14	ENSGT00940000159798.g #15	ENSGT00940000159798.h #15	ENSGT00940000167517.d	ENSGT00940000158273.b #19	ENSGT00390000013266 #20	ENSGT00950000183077.a.b #22	ENSGT00940000156084.s.b #23	ENSGT00950000183041.A.a.b.e.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980.i.a
Cyprininae_a	ANCESTRAL SPECIES	268	ENSGT00940000157262.m.a.d	ENSGT00390000007084.l	ENSGT00550000074921.a	ENSGT00940000166500.b	ENSGT00940000157569.k #7	ENSGT00940000160690 #10	ENSGT00390000017509.b #11	ENSGT00390000003282.B.f.d.a #12	ENSGT00390000000616 #13	ENSGT00940000159798.g.b #15	ENSGT00940000159798.h.a.b #15	ENSGT00940000167517.d	ENSGT00940000159798.h.b #15	ENSGT00940000158273.b #19	ENSGT00390000013266 #20	ENSGT00950000183077.a.b #22	ENSGT00940000156084.s.b #23	ENSGT00950000183041.A.a.b.e.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980.i.a
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1558											ENSSGRG00000012198	ENSSGRG00000012199 #15	TIMP4 (ENSSGRG00000012200) #15	syn2b (ENSSGRG00000012203)	PPARG (ENSSGRG00000012207) #19	mkrn2 (ENSSGRG00000012290) #22	mkrn2 (ENSSGRG00000012291) #22	raf1b (ENSSGRG00000012292) #23	ENSSGRG00000012293 #23	ENSSGRG00000012294 #23	cnbpb (ENSSGRG00000012295)	isy1 (ENSSGRG00000012296)	RAB43 (ENSSGRG00000012301)
Golden-line barbel	MODERN SPECIES	1558										ENSSGRG00000012198	ENSSGRG00000012199 #15	TIMP4 (ENSSGRG00000012200) #15	syn2b (ENSSGRG00000012203)	PPARG (ENSSGRG00000012207) #19	mkrn2 (ENSSGRG00000012290) #22	mkrn2 (ENSSGRG00000012291) #22	raf1b (ENSSGRG00000012292) #23	ENSSGRG00000012293 #23	ENSSGRG00000012294 #23	cnbpb (ENSSGRG00000012295)	isy1 (ENSSGRG00000012296)	RAB43 (ENSSGRG00000012301)
Golden-line barbel	MODERN SPECIES	919					HRH1 (ENSSGRG00000036658) #10	ATG7 (ENSSGRG00000036655) #11	vgll4b (ENSSGRG00000036647) #12	tamm41 (ENSSGRG00000036638) #13	TIMP4 (ENSSGRG00000036637) #15	TIMP4 (ENSSGRG00000036636) #15	syn2b (ENSSGRG00000036635)	PPARG (ENSSGRG00000036484) #19	ENSSGRG00000036469	ENSSGRG00000036468 #21	ENSSGRG00000036467	mkrn2 (ENSSGRG00000036465) #22	raf1b (ENSSGRG00000035606) #23	cnbpb (ENSSGRG00000035512)	isy1 (ENSSGRG00000035398)	zgc:77375 (ENSSGRG00000035392)	rab43 (ENSSGRG00000035390)
Common carp reference	MODERN SPECIES	42	atp2b2 (ENSCCRG00000044404)	SLC6A11 (ENSCCRG00000016659) #7	slc6a1b (ENSCCRG00000016189) #8	ENSCCRG00000075579	ENSCCRG00000072366	ENSCCRG00000068512	HRH1 (ENSCCRG00000082749) #10	ATG7 (ENSCCRG00000073737) #11	VGLL4 (ENSCCRG00000039243) #12	tamm41 (ENSCCRG00000036889) #13	ENSCCRG00000039284	TIMP4 (ENSCCRG00000069980) #15	TIMP4 (ENSCCRG00000060473) #15	PPARG (ENSCCRG00000029641) #19	tsen2 (ENSCCRG00000029639) #20	mkrn2 (ENSCCRG00000029638) #22	raf1b (ENSCCRG00000029621) #23	cnbpb (ENSCCRG00000071758)	isy1 (ENSCCRG00000053267)	zgc:77375 (ENSCCRG00000078156)	rab43 (ENSCCRG00000023130)	znf831 (ENSCCRG00000021373)	pdrg1 (ENSCCRG00000025072)	ENSCCRG00000081475	phactr3b (ENSCCRG00000001436)	acot8 (ENSCCRG00000079671)	srsf6b (ENSCCRG00000073658)	ift52 (ENSCCRG00000038783)	mybl2b (ENSCCRG00000004062)	ENSCCRG00000018170	ENSCCRG00000068236
Goldfish	MODERN SPECIES	29	ENSCARG00000021281	ENSCARG00000021300	ENSCARG00000021306	ENSCARG00000021318	npffl (ENSCARG00000021332)	SLC11A2 (ENSCARG00000021353)	avil (ENSCARG00000021483)	HRH1 (ENSCARG00000021671) #10	ATG7 (ENSCARG00000021718) #11	vgll4b (ENSCARG00000022145) #12	tamm41 (ENSCARG00000022168) #13	syn2b (ENSCARG00000022229)	TIMP4 (ENSCARG00000023678) #15	PPARG (ENSCARG00000023697) #19	tsen2 (ENSCARG00000023895) #20	mkrn2 (ENSCARG00000023910) #22	raf1b (ENSCARG00000023947) #23	cnbpb (ENSCARG00000023990)	isy1 (ENSCARG00000024022)	zgc:77375 (ENSCARG00000024081)	rab43 (ENSCARG00000024098)	ENSCARG00000024104	ttll7 (ENSCARG00000024108)	prkacba (ENSCARG00000024140)	samd13 (ENSCARG00000024207)	uox (ENSCARG00000024219)	rpf1 (ENSCARG00000024311)	SPATA1 (ENSCARG00000024838)	ctbs (ENSCARG00000024868)	agtrap (ENSCARG00000024891)	PANK4 (ENSCARG00000024915)
Zebrafish	MODERN SPECIES	2	iars1 (ENSDARG00000007955)	atp2b2 (ENSDARG00000063433)	SLC6A11 (ENSDARG00000087981) #7	slc6a1b (ENSDARG00000039647) #8	ATG7 (ENSDARG00000102893) #11	tamm41 (ENSDARG00000100157) #13	vgll4b (ENSDARG00000103730) #12	timp4.3 (ENSDARG00000100795) #15	timp4.2 (ENSDARG00000102617) #15	TIMP4 (ENSDARG00000111805) #15	syn2b (ENSDARG00000101054)	pparg (ENSDARG00000031848)	tsen2 (ENSDARG00000091851) #20	MKRN2OS (ENSDARG00000100728) #21	ENSDARG00000086655 #21	mkrn2 (ENSDARG00000007630) #22	ENSDARG00000105417	raf1b (ENSDARG00000059406) #23	cnbpb (ENSDARG00000070922)	isy1 (ENSDARG00000063466)	zgc:77375 (ENSDARG00000004282)	rab43 (ENSDARG00000059404)	nuf2 (ENSDARG00000034624)	znf831 (ENSDARG00000074906)	ENSDARG00000109591	pdrg1 (ENSDARG00000045017)	cyp27b1 (ENSDARG00000045015)	POC1A (ENSDARG00000078533)	mettl1 (ENSDARG00000076518)	slc11a2 (ENSDARG00000024295)	npffl (ENSDARG00000045016)
Clupeiformes	ANCESTRAL SPECIES	214	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000159798 #15	ENSGT00940000167517	ENSGT00940000158273 #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00940000156084 #23	ENSGT00950000183041.A.a.a
Atlantic herring	MODERN SPECIES	21	tnnc1a (ENSCHAG00000019978)	iars1 (ENSCHAG00000019757)	atp2b2 (ENSCHAG00000019399)	SLC6A11 (ENSCHAG00000018702) #7	slc6a1b (ENSCHAG00000017782) #8	HRH1 (ENSCHAG00000017743) #10	ATG7 (ENSCHAG00000017457) #11	vgll4b (ENSCHAG00000017431) #12	tamm41 (ENSCHAG00000017413) #13	timp4.2 (ENSCHAG00000017406) #15	syn2b (ENSCHAG00000015897)	PPARG (ENSCHAG00000015643) #19	tsen2 (ENSCHAG00000015557) #20	MKRN2OS (ENSCHAG00000015545) #21	ENSCHAG00000015536 #21	mkrn2 (ENSCHAG00000015498) #22	raf1b (ENSCHAG00000015158) #23	ENSCHAG00000014985	gng8 (ENSCHAG00000014964)	tmem45b (ENSCHAG00000014956)	emc3 (ENSCHAG00000014853)	ENSCHAG00000010466	ENSCHAG00000010316	fancd2 (ENSCHAG00000009730)	tex264a (ENSCHAG00000009710)	GRM2 (ENSCHAG00000009645)	parp3 (ENSCHAG00000009559)	ENSCHAG00000009554	ENSCHAG00000009548	CAV3 (ENSCHAG00000009540)	oxtra (ENSCHAG00000009498)
Denticle herring	MODERN SPECIES	3	iars1 (ENSDCDG00000034943)	atp2b2 (ENSDCDG00000034974)	SLC6A11 (ENSDCDG00000035032) #7	slc6a1b (ENSDCDG00000035164) #8	HRH1 (ENSDCDG00000035297) #10	ATG7 (ENSDCDG00000035327) #11	vgll4b (ENSDCDG00000035408) #12	tamm41 (ENSDCDG00000035411) #13	syn2b (ENSDCDG00000035419)	tamm41 (ENSDCDG00000016077) #13	timp4.2 (ENSDCDG00000016082) #15	PPARG (ENSDCDG00000016087) #19	tsen2 (ENSDCDG00000016127) #20	MKRN2OS (ENSDCDG00000016136) #21	ENSDCDG00000016138 #21	mkrn2 (ENSDCDG00000016143) #22	raf1b (ENSDCDG00000016216) #23	ENSDCDG00000016645	emc3 (ENSDCDG00000016651)	ENSDCDG00000016718	gpx1a (ENSDCDG00000020953)	ENSDCDG00000020954	fancd2 (ENSDCDG00000020972)	tex264a (ENSDCDG00000021219)	GRM2 (ENSDCDG00000021222)	stk35l (ENSDCDG00000021227)	bin2b (ENSDCDG00000021235)	ITGA5 (ENSDCDG00000021357)	slc48a1b (ENSDCDG00000026820)	ENSDCDG00000026821	HDAC7 (ENSDCDG00000026829)
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #7	ENSGT00940000156027.b #8	ENSGT00940000160690 #10	ENSGT00390000017509 #11	ENSGT00390000003282.B.f #12	ENSGT00390000000616 #13	ENSGT00940000156062.m #14	ENSGT00940000159798 #15	ENSGT00940000167517	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218
Protacanthopterygii	ANCESTRAL SPECIES	95										ENSGT00940000167517.a	ENSGT00940000159798 #15	ENSGT00940000156062.m #14	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00390000004199	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	400												ENSGT00940000158273.n #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b.s #22	ENSGT00940000156084.b #23	ENSGT00950000183041.A.a.a.a	ENSGT00390000014109	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a.b #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218.i	ENSGT00940000158148.e
Salmoninae_a	ANCESTRAL SPECIES	78											ENSGT00940000158273.n #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b.s #22	ENSGT00940000156084.b #23	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a.a.a #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218.i	ENSGT00940000158148.e	ENSGT00530000063168.a.a.a.e
Salmo	ANCESTRAL SPECIES	61												ENSGT00940000158273.n #19	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b.s #22	ENSGT00940000156084.b #23	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a.b #31	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218.i	ENSGT00940000158148.e	ENSGT00530000063168.a.a.a.e	ENSGT00950000183008.a.a.a.a
River trout	MODERN SPECIES	7												PPARG (ENSSTUG00000034013) #19	tsen2 (ENSSTUG00000034204) #20	ENSSTUG00000034229	MKRN2OS (ENSSTUG00000034234) #21	mkrn2 (ENSSTUG00000034245) #22	raf1b (ENSSTUG00000034296) #23	ENSSTUG00000034948	zgc:77375 (ENSSTUG00000034964)	rab43 (ENSSTUG00000034972)	ENSSTUG00000034973	ENSSTUG00000034976	ENSSTUG00000034980	EFCC1 (ENSSTUG00000034995)	ENSSTUG00000035002	IQSEC1 (ENSSTUG00000035075) #28	hdac11 (ENSSTUG00000035494) #30	ENSSTUG00000035774	ENSSTUG00000035792 #31	wnt7aa (ENSSTUG00000036082) #33	ENSSTUG00000036095
Atlantic salmon	MODERN SPECIES	14													PPARG (ENSSSAG00000029040) #19	tsen2 (ENSSSAG00000028772) #20	mkrn2os (ENSSSAG00000028619) #21	mkrn2 (ENSSSAG00000028437) #22	raf1b (ENSSSAG00000015667) #23	ENSSSAG00000008850	zgc:77375 (ENSSSAG00000084248)	rab43 (ENSSSAG00000117714)	ENSSSAG00000008818	ENSSSAG00000091562	ENSSSAG00000008800	IQSEC1 (ENSSSAG00000009162) #28	ENSSSAG00000121382	hdac11 (ENSSSAG00000008746) #30	FBLN2 (ENSSSAG00000008760) #31	ENSSSAG00000064612 #33	ptpdc1a (ENSSSAG00000008674)	barx1 (ENSSSAG00000114886)	ENSSSAG00000083877
Oncorhynchus	ANCESTRAL SPECIES	81												ENSGT00940000158273.n #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b.s #22	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a.b #31	ENSGT01040000241044	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218.i	ENSGT00940000158148.e	ENSGT00530000063168.a.a.a.f.a	ENSGT00950000183008.a.a.a.a
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000068585	barx1 (ENSOMYG00000006021)	ptpdc1a (ENSOMYG00000006063)	ENSOMYG00000071314 #33	ENSOMYG00000074785	ENSOMYG00000058266	FBLN2 (ENSOMYG00000056000) #31	HDAC11 (ENSOMYG00000006191) #30	IQSEC1 (ENSOMYG00000006284) #28	ENSOMYG00000052537	ENSOMYG00000062142	PPARG (ENSOMYG00000006827) #19	ENSOMYG00000053804	ENSOMYG00000006513	ENSOMYG00000006499 #21	mkrn2 (ENSOMYG00000006467) #22	ENSOMYG00000006436	ENSOMYG00000059639	zgc:77375 (ENSOMYG00000006359)	ENSOMYG00000066321	rab43 (ENSOMYG00000006335)	ENSOMYG00000023229	ENSOMYG00000006946
Oncorhynchus_a	ANCESTRAL SPECIES	95												ENSGT00940000158273.n #19	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b.s #22	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000156915.f.b #28	ENSGT00940000156308 #30	ENSGT00940000156047.a.b #31	ENSGT01040000241044	ENSGT00940000158523.c.b #33	ENSGT00940000164549.a.b	ENSGT00940000160218.i	ENSGT00940000158148.e	ENSGT00530000063168.a.a.a.f.a	ENSGT01010000229826
Coho salmon	MODERN SPECIES	25										ENSOKIG00005000199	PPARG (ENSOKIG00005000160) #19	ENSOKIG00005000081	TSEN2 (ENSOKIG00005000064) #20	MKRN2OS (ENSOKIG00005000038) #21	ENSOKIG00005028181	mkrn2 (ENSOKIG00005028154) #22	ENSOKIG00005028124	zgc:77375 (ENSOKIG00005028061)	rab43 (ENSOKIG00005028040)	ENSOKIG00005028031	ENSOKIG00005027979	IQSEC1 (ENSOKIG00005027932) #28	hdac11 (ENSOKIG00005027857) #30	FBLN2 (ENSOKIG00005027579) #31	ENSOKIG00005027544	WNT7A (ENSOKIG00005027513) #33	ptpdc1a (ENSOKIG00005027491)	barx1 (ENSOKIG00005027461)	ENSOKIG00005027442	ENSOKIG00005027435	ENSOKIG00005027400
Chinook salmon	MODERN SPECIES	736																mkrn2 (ENSOTSG00005038617) #22	ENSOTSG00005038616	zgc:77375 (ENSOTSG00005038615)	rab43 (ENSOTSG00005038614)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183077.a.b.t #22
Salmoninae_a	ANCESTRAL SPECIES	182				ENSGT00940000157562.q.a.b.b.a.b	ENSGT00940000161921.e.a.a	ENSGT00940000154543.d	ENSGT00940000161664	ENSGT00910000144253	ENSGT00940000158148.f.b	ENSGT00940000158148.f.a.b	ENSGT00940000160218.j	ENSGT00940000157312	ENSGT00390000004199	ENSGT00950000183041.A.a.a.a.a	ENSGT00390000014109	ENSGT00950000183077.a.b.t #22
Oncorhynchus	ANCESTRAL SPECIES	154							ENSGT00940000154543.d	ENSGT00940000161664	ENSGT00910000144253	ENSGT00940000158148.f.a.b	ENSGT00940000160218.j	ENSGT00940000157312	ENSGT00390000004199	ENSGT00950000183041.A.a.a.a.a	ENSGT00390000014109	ENSGT00950000183077.a.b.t #22	ENSGT00940000159798 #15	ENSGT00940000156062.m #14
Oncorhynchus_a	ANCESTRAL SPECIES	200							ENSGT00940000154543.d	ENSGT00940000161664	ENSGT00910000144253	ENSGT00940000158148.f.a.b	ENSGT00940000160218.j	ENSGT00940000157312	ENSGT00390000004199	ENSGT00950000183041.A.a.a.a.a	ENSGT00390000014109	ENSGT00950000183077.a.b.t #22	ENSGT00940000159798 #15	ENSGT00940000156062.m #14
Coho salmon	MODERN SPECIES					ENSOKIG00005000082	ENSOKIG00005000092	ENSOKIG00005000104	cstf1 (ENSOKIG00005000120)	ENSOKIG00005000131	phf2 (ENSOKIG00005000186)	barx1 (ENSOKIG00005000224)	acad9 (ENSOKIG00005000286)	ENSOKIG00005000370	nuf2 (ENSOKIG00005000381)	ENSOKIG00005000403	isy1 (ENSOKIG00005000418)	mkrn2 (ENSOKIG00005000432) #22	ENSOKIG00005000445	SYN2 (ENSOKIG00005000511) #14	TIMP4 (ENSOKIG00005000693) #15	HRH1 (ENSOKIG00005000701) #10	SLC6A1 (ENSOKIG00005000721) #8	ENSOKIG00005000824	ENSOKIG00005000924	ENSOKIG00005000930	ENSOKIG00005000931	DUSP7 (ENSOKIG00005000938)	alas1 (ENSOKIG00005000942)	ENSOKIG00005000951	ENSOKIG00005000953	ippk (ENSOKIG00005000957)	ECM2 (ENSOKIG00005000970)
Chinook salmon	MODERN SPECIES	2988														ENSOTSG00005032519	isy1 (ENSOTSG00005032518)	mkrn2 (ENSOTSG00005032516) #22	TIMP4 (ENSOTSG00005032515) #15	ENSOTSG00005032514 #14
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000006447	ENSOMYG00000054602	ENSOMYG00000062813	ENSOMYG00000068603	ENSOMYG00000069337	ENSOMYG00000007439	ENSOMYG00000048657	ENSOMYG00000059887	ENSOMYG00000007491	ENSOMYG00000062213	ENSOMYG00000064348	ENSOMYG00000007669	ENSOMYG00000007354	ENSOMYG00000007339	ENSOMYG00000007313	ENSOMYG00000007246 #22	ENSOMYG00000007232 #15	ENSOMYG00000006901 #14	ENSOMYG00000006350	ENSOMYG00000006375	il10b (ENSOMYG00000071035)	ENSOMYG00000076915	ENSOMYG00000006266	ENSOMYG00000006110	pdhb (ENSOMYG00000006083)	kctd6a (ENSOMYG00000050807)	ccdc71 (ENSOMYG00000006044)	ENSOMYG00000070695	stab1 (ENSOMYG00000005799)	ENSOMYG00000048480	OGN (ENSOMYG00000005564)
Salmo	ANCESTRAL SPECIES	124	ENSGT00390000003224.A	ENSGT00940000157660.k.b	ENSGT00950000183124.A.g	ENSGT00390000004207	ENSGT00940000157562.q.a.a.a	ENSGT00940000161921.e.a.a	ENSGT00940000154543.d	ENSGT00940000161664	ENSGT00910000144253	ENSGT00940000158148.f.b	ENSGT00940000160218.j	ENSGT00940000157312	ENSGT00390000004199	ENSGT00950000183041.A.a.a.a.a	ENSGT00390000014109	ENSGT00950000183077.a.b.t #22	ENSGT00940000156062.m #14	ENSGT00940000159798 #15
River trout	MODERN SPECIES	5	acot8 (ENSSTUG00000002194)	ENSSTUG00000002210	phactr3b (ENSSTUG00000002219)	PPP1R3D (ENSSTUG00000002222)	ENSSTUG00000002235	ENSSTUG00000002241	ENSSTUG00000002247	cstf1 (ENSSTUG00000002259)	phf2 (ENSSTUG00000002295)	ENSSTUG00000002653	barx1 (ENSSTUG00000002661)	acad9 (ENSSTUG00000002696)	nuf2 (ENSSTUG00000002880)	ENSSTUG00000002897	isy1 (ENSSTUG00000002939)	mkrn2 (ENSSTUG00000002950) #22	ENSSTUG00000002981	ENSSTUG00000002984	ENSSTUG00000003006	SYN2 (ENSSTUG00000003068) #14	TIMP4 (ENSSTUG00000003488) #15	ube2j2 (ENSSTUG00000003500)	ENSSTUG00000003537	ENSSTUG00000003558	IP6K1 (ENSSTUG00000003604)	lmcd1 (ENSSTUG00000003651)	AMIGO3 (ENSSTUG00000003671)	ENSSTUG00000003676	GRM7 (ENSSTUG00000003695)	dag1 (ENSSTUG00000003927)	ENSSTUG00000003934
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000111615	ENSSSAG00000094320	ENSSSAG00000060326	phactr3b (ENSSSAG00000086139)	ENSSSAG00000068209	ENSSSAG00000098714	ENSSSAG00000084297	cstf1 (ENSSSAG00000068210)	ENSSSAG00000090909	ENSSSAG00000092711	ENSSSAG00000113943	ENSSSAG00000082361	ENSSSAG00000039665	ENSSSAG00000083469	ENSSSAG00000091386	ENSSSAG00000039252 #22	ENSSSAG00000039204	ENSSSAG00000100229	ENSSSAG00000038561 #14	ENSSSAG00000090363 #15
Huchen	MODERN SPECIES	5701																mkrn2 (ENSHHUG00000031482) #22
Northern pike	MODERN SPECIES	1										syn2b (ENSELUG00000013135)	timp4.3 (ENSELUG00000028743) #15	PPARG (ENSELUG00000013192) #19	tsen2 (ENSELUG00000013262) #20	MKRN2OS (ENSELUG00000013278) #21	ENSELUG00000013290 #21	mkrn2 (ENSELUG00000013320) #22	raf1b (ENSELUG00000013381) #23	ENSELUG00000013402	isy1 (ENSELUG00000000489)	zgc:77375 (ENSELUG00000013454)	rab43 (ENSELUG00000013468)	nuf2 (ENSELUG00000013487)	ENSELUG00000013517	ENSELUG00000013547	acad9 (ENSELUG00000013607)	IQSEC1 (ENSELUG00000013644) #28	hdac11 (ENSELUG00000026940) #30	ENSELUG00000030211	FBLN2 (ENSELUG00000013779) #31	wnt7aa (ENSELUG00000013813) #33	ptpdc1a (ENSELUG00000013847)
Acanthomorphata	ANCESTRAL SPECIES	299											ENSGT00940000178764	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b
Euacanthomorphacea	ANCESTRAL SPECIES	95						ENSGT00940000165482	ENSGT00940000160586	ENSGT00940000162210	ENSGT00940000160611	ENSGT00940000155740	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT01100000264229	ENSGT00550000074997	ENSGT00880000138014.b	ENSGT01100000263545.a.b.d.b
Percomorphaceae	ANCESTRAL SPECIES	33	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000178492	ENSGT00940000171658	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547	ENSGT00940000160663	ENSGT00940000176933
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00940000178764	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000171658	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00940000178764	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000171658	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Atherinomorphae	ANCESTRAL SPECIES	29	ENSGT00940000158222	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00940000178764	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000171658	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000158222	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00940000178764	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00970000193381.a.a.a.a.a.a.a.c	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547
Aplocheiloidei	ANCESTRAL SPECIES	131	ENSGT00940000160093.a	ENSGT00700000104550.a.i	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263
Mangrove rivulus	MODERN SPECIES	1430																mkrn2 (ENSKMAG00000001201) #22
Turquoise killifish	MODERN SPECIES	1619	AMIGO3 (ENSNFUG00015006745)	ALDH4A1 (ENSNFUG00015006811)	ASCL5 (ENSNFUG00015007429)	ENSNFUG00015007435	polr2j (ENSNFUG00015007439)	DNTTIP1 (ENSNFUG00015007451)	PCIF1 (ENSNFUG00015007469)	HDHD5 (ENSNFUG00015007526)	isy1 (ENSNFUG00015007544)	si:ch211-15p9.2 (ENSNFUG00015007591)	rbm39a (ENSNFUG00015007623)	ENSNFUG00015007827	ENSNFUG00015007831 #20	ENSNFUG00015007840	ENSNFUG00015007845	MKRN2 (ENSNFUG00015007849) #22	FAM107A (ENSNFUG00015007856)	PIK3C2B (ENSNFUG00015008056)	ube2c (ENSNFUG00015010008)	zgc:109913 (ENSNFUG00015010026)	CABZ01041604.1 (ENSNFUG00015010036)	ENSNFUG00015010053	SNRPB (ENSNFUG00015010061)	ctsa (ENSNFUG00015010162)	KCNQ2 (ENSNFUG00015010920)	ddx27 (ENSNFUG00015012929)	ENSNFUG00015013012	ENSNFUG00015013016	KHK (ENSNFUG00015013047)	ENSNFUG00015013163	SH2D5 (ENSNFUG00015013175)
Cyprinodontoidei	ANCESTRAL SPECIES	46	ENSGT00940000169138	ENSGT00940000158222	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00940000178764	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547
NAME_4	ANCESTRAL SPECIES	174	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00940000178764	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781.d	ENSGT00950000183146.b.b	ENSGT00940000155781.c	ENSGT01030000234648.a.a.c.a
Mummichog	MODERN SPECIES	503	ctsa (ENSFHEG00000006517)	ENSFHEG00000006534	ENSFHEG00000006541	zgc:109913 (ENSFHEG00000006579)	ube2c (ENSFHEG00000006609)	polr2j (ENSFHEG00000006625)	DNTTIP1 (ENSFHEG00000006633)	pcif1 (ENSFHEG00000006684)	ENSFHEG00000006713	ENSFHEG00000006722	isy1 (ENSFHEG00000006776)	si:ch211-15p9.2 (ENSFHEG00000006787)	rbm39a (ENSFHEG00000006810)	ENSFHEG00000006845 #20	ENSFHEG00000006865 #21	mkrn2 (ENSFHEG00000006905) #22	FAM107A (ENSFHEG00000006916)	PIK3C2B (ENSFHEG00000006934)	ENSFHEG00000006939	ENSFHEG00000006950	aldh4a1 (ENSFHEG00000006971)	RNF123 (ENSFHEG00000007126)	AMIGO3 (ENSFHEG00000007168)	RNF123 (ENSFHEG00000007212)
Sheepshead minnow	MODERN SPECIES	1562	ENSCVAG00000014186	SNRPN (ENSCVAG00000014193)	ENSCVAG00000014201	zgc:109913 (ENSCVAG00000014207)	ube2c (ENSCVAG00000014248)	polr2j (ENSCVAG00000014267)	DNTTIP1 (ENSCVAG00000014288)	pcif1 (ENSCVAG00000014332)	HDHD5 (ENSCVAG00000014343)	isy1 (ENSCVAG00000000650)	si:ch211-15p9.2 (ENSCVAG00000014360)	rbm39a (ENSCVAG00000014408)	tsen2 (ENSCVAG00000014431) #20	ENSCVAG00000014442	ENSCVAG00000014450 #21	mkrn2 (ENSCVAG00000014456) #22
Poeciliinae	ANCESTRAL SPECIES	31	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g.c	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547
Poecilia	ANCESTRAL SPECIES	25	ENSGT00700000104550.a.i	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000171658	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g.c	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.a.b.b	ENSGT00940000160561
NAME_6	ANCESTRAL SPECIES	313			ENSGT00700000104550.a.i	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00940000169528
Sailfin molly	MODERN SPECIES	2157	ctsa (ENSPLAG00000014159)	snrpb (ENSPLAG00000014130)	ENSPLAG00000014116	zgc:109913 (ENSPLAG00000014104)	ube2c (ENSPLAG00000014090)	polr2j (ENSPLAG00000014075)	DNTTIP1 (ENSPLAG00000014059)	ENSPLAG00000014051	gjb9a (ENSPLAG00000000325)	pcif1 (ENSPLAG00000014011)	HDHD5 (ENSPLAG00000014001)	si:ch211-15p9.2 (ENSPLAG00000013942)	rbm39a (ENSPLAG00000013925)	tsen2 (ENSPLAG00000013787) #20	MKRN2OS (ENSPLAG00000013778) #21	mkrn2 (ENSPLAG00000013770) #22	ENSPLAG00000013755
Amazon molly	MODERN SPECIES	973			ENSPFOG00000023022	ctsa (ENSPFOG00000011676)	snrpb (ENSPFOG00000011802)	ENSPFOG00000011876	zgc:109913 (ENSPFOG00000011902)	ube2c (ENSPFOG00000011928)	polr2j (ENSPFOG00000012001)	DNTTIP1 (ENSPFOG00000012022)	pcif1 (ENSPFOG00000012161)	si:ch211-15p9.2 (ENSPFOG00000012286)	rbm39a (ENSPFOG00000012350)	tsen2 (ENSPFOG00000012459) #20	MKRN2OS (ENSPFOG00000012536) #21	mkrn2 (ENSPFOG00000012571) #22
Guppy	MODERN SPECIES	457				ahcy (ENSPREG00000020799)	CHMP4B (ENSPREG00000020817)	ENSPREG00000020839	ENSPREG00000020850	ENSPREG00000020864	mych (ENSPREG00000020875)	ergic3 (ENSPREG00000020899)	romo1 (ENSPREG00000020948)	smpd4 (ENSPREG00000020995)	rbm39a (ENSPREG00000021088)	ENSPREG00000021166	MKRN2OS (ENSPREG00000021189) #21	mkrn2 (ENSPREG00000021199) #22	FAM107A (ENSPREG00000021220)	PIK3C2B (ENSPREG00000021267)	ENSPREG00000021293	ASCL5 (ENSPREG00000021303)	aldh4a1 (ENSPREG00000021317)	ENSPREG00000021340	ENSPREG00000021351	ENSPREG00000021366	AMIGO3 (ENSPREG00000021377)	ENSPREG00000021406	GRM7 (ENSPREG00000021434)	ENSPREG00000021445	ENSPREG00000021448	ENSPREG00000021456	nicn1 (ENSPREG00000021466)
Platyfish	MODERN SPECIES	12	ctsa (ENSXMAG00000012347)	snrpb (ENSXMAG00000028767)	ENSXMAG00000012378	ENSXMAG00000021148	zgc:109913 (ENSXMAG00000012402)	ube2c (ENSXMAG00000012406)	polr2j (ENSXMAG00000012422)	DNTTIP1 (ENSXMAG00000023667)	pcif1 (ENSXMAG00000012427)	ENSXMAG00000012443	isy1 (ENSXMAG00000012452)	si:ch211-15p9.2 (ENSXMAG00000012458)	rbm39a (ENSXMAG00000012463)	tsen2 (ENSXMAG00000012479) #20	MKRN2OS (ENSXMAG00000012504) #21	mkrn2 (ENSXMAG00000012508) #22	ENSXMAG00000028757	FAM107A (ENSXMAG00000012529)	PIK3C2B (ENSXMAG00000012532)	ENSXMAG00000027726	ASCL5 (ENSXMAG00000024316)	aldh4a1 (ENSXMAG00000012583)	AMIGO3 (ENSXMAG00000010901)	RNF123 (ENSXMAG00000012608)	ENSXMAG00000026990	ENSXMAG00000028609	GRM7 (ENSXMAG00000015698)	nicn1 (ENSXMAG00000024537)	dag1 (ENSXMAG00000012250)	pcbp4 (ENSXMAG00000015709)	GDF5 (ENSXMAG00000012227)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000153456.b.b	ENSGT00590000083094.a.a.c.a.a	ENSGT00940000160100	ENSGT00940000155048.d.a	ENSGT00390000018852	ENSGT00940000157446	ENSGT00940000165995	ENSGT01020000230394.e.a.a.b.a.a.b.a.a	ENSGT00940000158854	ENSGT01030000234623.a.a.a.a.a	ENSGT00390000004199	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951 #37	ENSGT00940000166055	ENSGT00940000158934	ENSGT00940000164258	ENSGT00940000160913	ENSGT00940000154543.d	ENSGT00390000013253	ENSGT00950000183053.C.a	ENSGT00940000161664	ENSGT00910000144253
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000153456.b.b	ENSGT00590000083094.a.a.c.a.a	ENSGT00940000160100	ENSGT00940000155048.d.a	ENSGT00390000018852	ENSGT00940000157446	ENSGT00940000165995	ENSGT01020000230394.e.a.a.b.a.a.b.a.a	ENSGT00940000158854	ENSGT01030000234623.a.a.a.a.a	ENSGT00390000004199	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951 #37	ENSGT00940000166055	ENSGT00940000158934	ENSGT00940000164258	ENSGT00940000160913	ENSGT00940000154543.d	ENSGT00390000013253	ENSGT00950000183053.C.a	ENSGT00940000161664	ENSGT00910000144253
Chinese medaka	MODERN SPECIES	957	LDLRAD2 (ENSOSIG00000023668)	nampt2 (ENSOSIG00000023651)	ENSOSIG00000023057	fezf2 (ENSOSIG00000022742)	ptprga (ENSOSIG00000022739)	MTMR14 (ENSOSIG00000022711)	ENSOSIG00000022648	si:dkey-19e4.5 (ENSOSIG00000022644)	ENSOSIG00000022563	SERINC3 (ENSOSIG00000022334)	nuf2 (ENSOSIG00000022287)	si:ch211-15p9.2 (ENSOSIG00000022285)	rbm39a (ENSOSIG00000022280)	ENSOSIG00000022276 #20	MKRN2OS (ENSOSIG00000022275) #21	mkrn2 (ENSOSIG00000022273) #22	ENSOSIG00000022271	FAM107A (ENSOSIG00000022270)	PTPRT (ENSOSIG00000017976)	zgc:171566 (ENSOSIG00000017642)	GRIP2 (ENSOSIG00000017297)	slc6a6b (ENSOSIG00000012583)	LSM3 (ENSOSIG00000012559) #37	ENSOSIG00000012557	RIMS4 (ENSOSIG00000012556)	ENSOSIG00000012555	aldh1l1 (ENSOSIG00000007822)	ENSOSIG00000007789	pdrg1 (ENSOSIG00000007788)	ENSOSIG00000007784	ENSOSIG00000007783
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000010190	fezf2 (ENSORLG00000010156)	ENSORLG00000023114	ptprga (ENSORLG00000010143)	MTMR14 (ENSORLG00000010139)	ENSORLG00000010116	si:dkey-19e4.5 (ENSORLG00000010093)	ENSORLG00000010071	ENSORLG00000009973	SERINC3 (ENSORLG00000009959)	nuf2 (ENSORLG00000009929)	si:ch211-15p9.2 (ENSORLG00000022741)	rbm39a (ENSORLG00000009919)	ENSORLG00000026661 #20	MKRN2OS (ENSORLG00000025591) #21	mkrn2 (ENSORLG00000009824) #22	ENSORLG00000023811	PTPRT (ENSORLG00000009770)	zgc:171566 (ENSORLG00000009641)	ENSORLG00000025197	GRIP2 (ENSORLG00000009623)	ENSORLG00000009579	LSM3 (ENSORLG00000025900) #37	ENSORLG00000009523	ENSORLG00000009518	ENSORLG00000009508	aldh1l1 (ENSORLG00000009492)	ENSORLG00000030548	pdrg1 (ENSORLG00000021999)	ENSORLG00000027924	ENSORLG00000027242
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00590000083094.a.a.c.a.a	ENSGT00940000160100	ENSGT00940000155048.d.a	ENSGT00390000018852	ENSGT00940000157446	ENSGT00940000165995	ENSGT01020000230394.e.a.a.b.a.a.b.a.a	ENSGT00940000158854	ENSGT00940000172289	ENSGT01030000234623.a.a.a.a.a	ENSGT00390000004199	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951 #37	ENSGT00940000166055	ENSGT00940000158934	ENSGT00940000164258	ENSGT00940000160913	ENSGT00940000154543.d	ENSGT00390000013253	ENSGT00950000183053.C.a	ENSGT00940000161664	ENSGT00910000144253
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000018501	fezf2 (ENSOJAG00000019416)	ptprga (ENSOJAG00000019432)	MTMR14 (ENSOJAG00000019586)	ENSOJAG00000020540	si:dkey-19e4.5 (ENSOJAG00000020554)	ENSOJAG00000020618	ENSOJAG00000021007	SERINC3 (ENSOJAG00000021032)	ENSOJAG00000021378	nuf2 (ENSOJAG00000021383)	si:ch211-15p9.2 (ENSOJAG00000021403)	rbm39a (ENSOJAG00000021406)	tsen2 (ENSOJAG00000021525) #20	MKRN2OS (ENSOJAG00000021535) #21	mkrn2 (ENSOJAG00000021537) #22	ENSOJAG00000021557	ENSOJAG00000021558	FAM107A (ENSOJAG00000021577)	PTPRT (ENSOJAG00000021654)	zgc:171566 (ENSOJAG00000022369)	GRIP2 (ENSOJAG00000022415)	slc6a6b (ENSOJAG00000022599)	LSM3 (ENSOJAG00000022940) #37	ENSOJAG00000022946	RIMS4 (ENSOJAG00000022948)	ENSOJAG00000022957	aldh1l1 (ENSOJAG00000022974)	ENSOJAG00000023054	pdrg1 (ENSOJAG00000023058)	ENSOJAG00000023064
Indian medaka	MODERN SPECIES	8	ENSOMEG00000001533	fezf2 (ENSOMEG00000001553)	ptprga (ENSOMEG00000001562)	MTMR14 (ENSOMEG00000001585)	ENSOMEG00000001605	si:dkey-19e4.5 (ENSOMEG00000001615)	ENSOMEG00000001639	ENSOMEG00000001653	ENSOMEG00000001657	SERINC3 (ENSOMEG00000001667)	nuf2 (ENSOMEG00000001674)	si:ch211-15p9.2 (ENSOMEG00000001677)	rbm39a (ENSOMEG00000001685)	tsen2 (ENSOMEG00000001692) #20	MKRN2OS (ENSOMEG00000001696) #21	mkrn2 (ENSOMEG00000001704) #22	FAM107A (ENSOMEG00000001711)	PTPRT (ENSOMEG00000001773)	zgc:171566 (ENSOMEG00000001809)	GRIP2 (ENSOMEG00000001874)	ENSOMEG00000001898	slc6a6b (ENSOMEG00000001907)	LSM3 (ENSOMEG00000001915) #37	ENSOMEG00000001927	RIMS4 (ENSOMEG00000001933)	ENSOMEG00000001945	aldh1l1 (ENSOMEG00000001957)	pdrg1 (ENSOMEG00000001971)	ENSOMEG00000001978	znf831 (ENSOMEG00000001982)	cstf1 (ENSOMEG00000001993)
Ovalentaria_B	ANCESTRAL SPECIES	30	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000171658	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT01030000234583.a.a.c.b.a.a.b.a.b.a.b	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561
Cichlidae	ANCESTRAL SPECIES	39	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	50	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Haplochromini	ANCESTRAL SPECIES	55	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Haplochromini_A	ANCESTRAL SPECIES	61	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00940000181725	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Haplochromini_B	ANCESTRAL SPECIES	74	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00940000181725	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Eastern happy	MODERN SPECIES	17	ENSACLG00000014728	snrpb (ENSACLG00000014707)	ENSACLG00000014682	zgc:109913 (ENSACLG00000014668)	ube2c (ENSACLG00000014635)	polr2j (ENSACLG00000014564)	DNTTIP1 (ENSACLG00000014543)	pcif1 (ENSACLG00000014471)	ENSACLG00000014458	isy1 (ENSACLG00000014430)	ENSACLG00000014402	si:ch211-15p9.2 (ENSACLG00000014394)	rbm39a (ENSACLG00000014339)	tsen2 (ENSACLG00000014303) #20	MKRN2OS (ENSACLG00000014293) #21	mkrn2 (ENSACLG00000014256) #22	FAM107A (ENSACLG00000014232)	ENSACLG00000014216	ENSACLG00000014134	ASCL5 (ENSACLG00000014120)	aldh4a1 (ENSACLG00000014062)	ENSACLG00000014039	AMIGO3 (ENSACLG00000014028)	RNF123 (ENSACLG00000013912)	ENSACLG00000013900	ENSACLG00000013891	ENSACLG00000013886	GRM7 (ENSACLG00000013783)	ENSACLG00000013707	nicn1 (ENSACLG00000013534)	ENSACLG00000013525
Zebra mbuna	MODERN SPECIES	476														ENSMZEG00005023977	MKRN2OS (ENSMZEG00005023976) #21	mkrn2 (ENSMZEG00005023975) #22	FAM107A (ENSMZEG00005023974)	ENSMZEG00005023973
P. nyererei	MODERN SPECIES	810									ENSPNYG00000011196	ENSPNYG00000011186	DNTTIP1 (ENSPNYG00000011127)	ENSPNYG00000011089	rbm39a (ENSPNYG00000010982)	ENSPNYG00000010948	MKRN2OS (ENSPNYG00000010925) #21	mkrn2 (ENSPNYG00000010905) #22
Burton s mouthbrooder	MODERN SPECIES	859	KCNQ2 (ENSHBUG00000008259)	ctsa (ENSHBUG00000008291)	ENSHBUG00000008323	snrpb (ENSHBUG00000008369)	ENSHBUG00000008401	zgc:109913 (ENSHBUG00000008459)	ube2c (ENSHBUG00000008447)	polr2j (ENSHBUG00000008467)	DNTTIP1 (ENSHBUG00000008832)	pcif1 (ENSHBUG00000008883)	ENSHBUG00000008903	ENSHBUG00000008922	si:ch211-15p9.2 (ENSHBUG00000008942)	rbm39a (ENSHBUG00000009017)	tsen2 (ENSHBUG00000009039) #20	mkrn2 (ENSHBUG00000009078) #22	ENSHBUG00000009088
Lyretail cichlid	MODERN SPECIES	374	ENSNBRG00000006497	ENSNBRG00000006517	zgc:109913 (ENSNBRG00000006543)	ube2c (ENSNBRG00000006560)	polr2j (ENSNBRG00000006580)	ENSNBRG00000006661	pcif1 (ENSNBRG00000006865)	pcif1 (ENSNBRG00000006900)	ENSNBRG00000006938	isy1 (ENSNBRG00000006974)	ENSNBRG00000006996	si:ch211-15p9.2 (ENSNBRG00000007016)	rbm39a (ENSNBRG00000007057)	tsen2 (ENSNBRG00000007105) #20	MKRN2OS (ENSNBRG00000007129) #21	mkrn2 (ENSNBRG00000007146) #22	ENSNBRG00000007180	PIK3C2B (ENSNBRG00000007196)	ENSNBRG00000007273	ENSNBRG00000007286	aldh4a1 (ENSNBRG00000007308)	ENSNBRG00000007338	AMIGO3 (ENSNBRG00000007350)	ENSNBRG00000007363	ENSNBRG00000007377	ENSNBRG00000007381	ENSNBRG00000007394	dag1 (ENSNBRG00000007446)	pcbp4 (ENSNBRG00000007475)	rbm15b (ENSNBRG00000007512)	manf (ENSNBRG00000007537)
Nile tilapia	MODERN SPECIES	17	zgc:109913 (ENSONIG00000000252)	ube2c (ENSONIG00000028821)	polr2j (ENSONIG00000000259)	ENSONIG00000028562	pcif1 (ENSONIG00000000261)	ENSONIG00000000263	ENSONIG00000042201	ENSONIG00000039382	ENSONIG00000032978	isy1 (ENSONIG00000000267)	ENSONIG00000033174	si:ch211-15p9.2 (ENSONIG00000000272)	rbm39a (ENSONIG00000000274)	tsen2 (ENSONIG00000000278) #20	ENSONIG00000000280	mkrn2 (ENSONIG00000000281) #22	ENSONIG00000042490	ENSONIG00000041988	FAM107A (ENSONIG00000000289)	ENSONIG00000029056	ASCL5 (ENSONIG00000039187)	aldh4a1 (ENSONIG00000000298)	RNF123 (ENSONIG00000000304)	AMIGO3 (ENSONIG00000020715)	ENSONIG00000043088	ENSONIG00000035000	GRM7 (ENSONIG00000000308)	ENSONIG00000033125	ENSONIG00000028696	ENSONIG00000032897	nicn1 (ENSONIG00000018549)
Midas cichlid	MODERN SPECIES	681													rbm39a (ENSACIG00000022910)	tsen2 (ENSACIG00000022861) #20	MKRN2OS (ENSACIG00000022850) #21	mkrn2 (ENSACIG00000022839) #22	FAM107A (ENSACIG00000022815)	PIK3C2B (ENSACIG00000022606)	cand2 (ENSACIG00000022514) #26	sec13 (ENSACIG00000022500)	dnase1l4.2 (ENSACIG00000022468)	ENSACIG00000022447	grm8b (ENSACIG00000022439)
Pomacentridae	ANCESTRAL SPECIES	125	ENSGT00940000169138	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a
Pomacentridae_A	ANCESTRAL SPECIES	131	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a
Amphiprion	ANCESTRAL SPECIES	219	ENSGT00880000138014.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a
Clown anemonefish	MODERN SPECIES	1246	ctsa (ENSAOCG00000024524)	ENSAOCG00000006868	snrpb (ENSAOCG00000006876)	ENSAOCG00000006889	zgc:109913 (ENSAOCG00000000355)	ube2c (ENSAOCG00000002648)	polr2j (ENSAOCG00000006937)	DNTTIP1 (ENSAOCG00000006955)	pcif1 (ENSAOCG00000007011)	ENSAOCG00000001904	isy1 (ENSAOCG00000007147)	si:ch211-15p9.2 (ENSAOCG00000007205)	rbm39a (ENSAOCG00000007223)	tsen2 (ENSAOCG00000007248) #20	MKRN2OS (ENSAOCG00000007255) #21	mkrn2 (ENSAOCG00000007297) #22	FAM107A (ENSAOCG00000007309)
Orange clownfish	MODERN SPECIES	20	ctsa (ENSAPEG00000021535)	snrpb (ENSAPEG00000021585)	ENSAPEG00000021623	ENSAPEG00000021651	zgc:109913 (ENSAPEG00000021662)	ube2c (ENSAPEG00000021682)	polr2j (ENSAPEG00000021761)	ENSAPEG00000021737	pcif1 (ENSAPEG00000021778)	ENSAPEG00000021832	isy1 (ENSAPEG00000021883)	si:ch211-15p9.2 (ENSAPEG00000021920)	rbm39a (ENSAPEG00000021927)	tsen2 (ENSAPEG00000021947) #20	MKRN2OS (ENSAPEG00000021959) #21	mkrn2 (ENSAPEG00000021987) #22	ENSAPEG00000022016	ENSAPEG00000022054	ENSAPEG00000022073	khk (ENSAPEG00000022116)	pltp (ENSAPEG00000022254)	ddx27 (ENSAPEG00000022281)	ccdc71 (ENSAPEG00000022297)	ENSAPEG00000022339	ENSAPEG00000022368	ENSAPEG00000022397	ENSAPEG00000022416	hgh1 (ENSAPEG00000022424)	zgc:153675 (ENSAPEG00000022448)	rbbp5 (ENSAPEG00000022468)	DCAF1 (ENSAPEG00000022532)
Spiny chromis	MODERN SPECIES	2747															MKRN2OS (ENSAPOG00000014856) #21	mkrn2 (ENSAPOG00000014842) #22	FAM107A (ENSAPOG00000014651)
Bicolor damselfish	MODERN SPECIES	924	ENSSPAG00000021975	zgc:109913 (ENSSPAG00000021969)	ube2c (ENSSPAG00000021961)	polr2j (ENSSPAG00000021953)	DNTTIP1 (ENSSPAG00000021948)	pcif1 (ENSSPAG00000021921)	ENSSPAG00000021911	isy1 (ENSSPAG00000021900)	ENSSPAG00000021850	si:ch211-15p9.2 (ENSSPAG00000021816)	rbm39a (ENSSPAG00000021798)	ENSSPAG00000021789	ENSSPAG00000021777	ENSSPAG00000021756 #20	ENSSPAG00000021741 #21	mkrn2 (ENSSPAG00000021715) #22	FAM107A (ENSSPAG00000021701)	wnt7aa (ENSSPAG00000021691) #33	FBLN2 (ENSSPAG00000021662) #31	hdac11 (ENSSPAG00000021638) #30
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Anabantaria	ANCESTRAL SPECIES		ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT01030000235208	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000160093.a	ENSGT00880000138014.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000154468.tb.a	ENSGT00960000191447	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00390000018547
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	18	ENSATEG00000009807	ENSATEG00000009791	ube2c (ENSATEG00000009751)	ENSATEG00000027254	ENSATEG00000028967	ENSATEG00000028604	ENSATEG00000009619	ENSATEG00000009541	ENSATEG00000009521	ENSATEG00000009504	ENSATEG00000009461	ENSATEG00000009443	ENSATEG00000026035	ENSATEG00000028083 #21	ENSATEG00000029135 #21	mkrn2 (ENSATEG00000009352) #22	ENSATEG00000009337	ENSATEG00000009229	ENSATEG00000009210	ENSATEG00000009200	ENSATEG00000009148	ENSATEG00000009115	ENSATEG00000008817	ENSATEG00000026741	ENSATEG00000008775	ENSATEG00000008739	ENSATEG00000008720	ENSATEG00000025280	ENSATEG00000008680	ENSATEG00000008577	pcbp4 (ENSATEG00000008529)
Climbing perch	MODERN SPECIES	34													ENSATEG00000007196	ENSATEG00000007187	ENSATEG00000028685	ENSATEG00000007074 #22	ENSATEG00000027891	ENSATEG00000025784	ENSATEG00000007013
Siamese fighting fish	MODERN SPECIES	16	snrpb (ENSBSLG00000004016)	ENSBSLG00000003989	ENSBSLG00000003983	zgc:109913 (ENSBSLG00000003962)	ube2c (ENSBSLG00000003919)	polr2j (ENSBSLG00000003900)	DNTTIP1 (ENSBSLG00000003860)	pcif1 (ENSBSLG00000003799)	ENSBSLG00000003723	isy1 (ENSBSLG00000003665)	ENSBSLG00000003633	rbm39a (ENSBSLG00000003071)	ENSBSLG00000003068	ENSBSLG00000003061	ENSBSLG00000003059	mkrn2 (ENSBSLG00000003043) #22	ENSBSLG00000003042	FAM107A (ENSBSLG00000003040)	PIK3C2B (ENSBSLG00000002809)	ENSBSLG00000002751	ASCL5 (ENSBSLG00000002744)	aldh4a1 (ENSBSLG00000002311)	AMIGO3 (ENSBSLG00000002132)	GRM7 (ENSBSLG00000001476)	nicn1 (ENSBSLG00000001438)	dag1 (ENSBSLG00000001431)	pcbp4 (ENSBSLG00000001415)	pcbp4 (ENSBSLG00000001408)	rbm15b (ENSBSLG00000001399)	manf (ENSBSLG00000001389)	oser1 (ENSBSLG00000001381)
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000009294	ENSMAMG00000025668	ENSMAMG00000009308	zgc:109913 (ENSMAMG00000009336)	ube2c (ENSMAMG00000009347)	ENSMAMG00000009374	ENSMAMG00000009388	pcif1 (ENSMAMG00000009401)	ENSMAMG00000009469	ENSMAMG00000009501	ENSMAMG00000009547	ENSMAMG00000009666	ENSMAMG00000009683	ENSMAMG00000009733 #20	ENSMAMG00000024966	ENSMAMG00000009756 #22	ENSMAMG00000027632	ENSMAMG00000009790	ENSMAMG00000009865	ENSMAMG00000009874	ENSMAMG00000028140	ENSMAMG00000027797	ENSMAMG00000009949	ENSMAMG00000010030	ENSMAMG00000010034	ENSMAMG00000010042	ENSMAMG00000010071	ENSMAMG00000010098	nicn1 (ENSMAMG00000028280)	ENSMAMG00000010144	pcbp4 (ENSMAMG00000010163)
Carangaria	ANCESTRAL SPECIES	34	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000178492	ENSGT00560000077335	ENSGT00940000154404.b	ENSGT00940000163864
Carangaria_A	ANCESTRAL SPECIES	81	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864
Seriola	ANCESTRAL SPECIES	69	ENSGT00940000155052	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00390000003839.b #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00970000193381.a.b.b.c.b.b.a.a.a	ENSGT00940000163190.g.a	ENSGT00940000163190.h.a.b.ab	ENSGT00940000163190.h.a.b.`b	ENSGT00560000077335	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00970000193381.a.b.b.c.b.b.a.a.b	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b
Yellowtail amberjack	MODERN SPECIES	2784	snrpb (ENSSLDG00000022391)	ENSSLDG00000022379	zgc:109913 (ENSSLDG00000022371)	ube2c (ENSSLDG00000022361)	polr2j (ENSSLDG00000022354)	ENSSLDG00000022332	pcif1 (ENSSLDG00000022277)	ENSSLDG00000022265	isy1 (ENSSLDG00000022252)	ENSSLDG00000022237	si:ch211-15p9.2 (ENSSLDG00000022216)	rbm39a (ENSSLDG00000022188)	ENSSLDG00000022171 #20	ENSSLDG00000022152 #21	ENSSLDG00000022143 #21	mkrn2 (ENSSLDG00000022136) #22	FAM107A (ENSSLDG00000022117)	ENSSLDG00000022106	PIK3C2B (ENSSLDG00000022056)	ENSSLDG00000022032	ASCL5 (ENSSLDG00000022029)	ENSSLDG00000022021	ENSSLDG00000022012	ENSSLDG00000022006	ENSSLDG00000021996	aldh4a1 (ENSSLDG00000021961)	AMIGO3 (ENSSLDG00000021955)	RNF123 (ENSSLDG00000021901)	ENSSLDG00000021892
Greater amberjack	MODERN SPECIES	25	snrpb (ENSSDUG00000018539)	ENSSDUG00000018530	zgc:109913 (ENSSDUG00000018521)	ube2c (ENSSDUG00000018505)	polr2j (ENSSDUG00000018490)	DNTTIP1 (ENSSDUG00000018467)	pcif1 (ENSSDUG00000018400)	ENSSDUG00000018317	isy1 (ENSSDUG00000018291)	ENSSDUG00000018275	si:ch211-15p9.2 (ENSSDUG00000018226)	rbm39a (ENSSDUG00000018191)	tsen2 (ENSSDUG00000018175) #20	MKRN2OS (ENSSDUG00000018163) #21	ENSSDUG00000018155 #21	mkrn2 (ENSSDUG00000018142) #22	FAM107A (ENSSDUG00000018125)	PIK3C2B (ENSSDUG00000018064)	ENSSDUG00000018049	ASCL5 (ENSSDUG00000018046)	ENSSDUG00000018040	ENSSDUG00000018032	ENSSDUG00000018027	ENSSDUG00000018013	ENSSDUG00000018009	ENSSDUG00000018007	ENSSDUG00000017993	ENSSDUG00000017981	aldh4a1 (ENSSDUG00000017947)	AMIGO3 (ENSSDUG00000017937)	RNF123 (ENSSDUG00000017867)
Barramundi perch	MODERN SPECIES	440	snrpb (ENSLCAG00010023468)	ENSLCAG00010023456	zgc:109913 (ENSLCAG00010023453)	ube2c (ENSLCAG00010023448)	polr2j (ENSLCAG00010023436)	ENSLCAG00010023427	pcif1 (ENSLCAG00010023409)	ENSLCAG00010023383	isy1 (ENSLCAG00010023375)	ENSLCAG00010023348	si:ch211-15p9.2 (ENSLCAG00010023339)	rbm39a (ENSLCAG00010023335)	tsen2 (ENSLCAG00010023322) #20	ENSLCAG00010023318	ENSLCAG00010023317 #21	mkrn2 (ENSLCAG00010023314) #22	ENSLCAG00010023309	ENSLCAG00010023306	ENSLCAG00010023304	PIK3C2B (ENSLCAG00010023268)	ENSLCAG00010023255	ASCL5 (ENSLCAG00010023252)	ENSLCAG00010023249	aldh4a1 (ENSLCAG00010023227)	ENSLCAG00010023206	ENSLCAG00010023204	AMIGO3 (ENSLCAG00010023202)	RNF123 (ENSLCAG00010022972)
Pleuronectoidei	ANCESTRAL SPECIES	31	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Tongue sole	MODERN SPECIES	2	snrpb (ENSCSEG00000020328)	ENSCSEG00000020335	ENSCSEG00000020339	ENSCSEG00000020342	ube2c (ENSCSEG00000020347)	polr2j (ENSCSEG00000020352)	DNTTIP1 (ENSCSEG00000020357)	pcif1 (ENSCSEG00000020360)	ENSCSEG00000020371	isy1 (ENSCSEG00000020382)	ENSCSEG00000020388	si:ch211-15p9.2 (ENSCSEG00000020393)	rbm39a (ENSCSEG00000020394)	tsen2 (ENSCSEG00000020407) #20	MKRN2OS (ENSCSEG00000020411) #21	mkrn2 (ENSCSEG00000020415) #22	ENSCSEG00000020423	PIK3C2B (ENSCSEG00000020431)	ENSCSEG00000020442	CHST15 (ENSCSEG00000020445)	aldh4a1 (ENSCSEG00000020448)	RNF123 (ENSCSEG00000020456)	AMIGO3 (ENSCSEG00000020465)	psmf1 (ENSCSEG00000020469)	tma7 (ENSCSEG00000020472)	slmapa (ENSCSEG00000020484)	ENSCSEG00000020757	mcm2 (ENSCSEG00000020768)	cyc1 (ENSCSEG00000020779)	smpd4 (ENSCSEG00000020794)	pigu (ENSCSEG00000000428)
Turbot	MODERN SPECIES	18	ENSSMAG00000023950	zgc:109913 (ENSSMAG00000006745)	ube2c (ENSSMAG00000006707)	ENSSMAG00000006729	ENSSMAG00000006679	pcif1 (ENSSMAG00000006634)	ENSSMAG00000006615	ENSSMAG00000006601	ENSSMAG00000006593	ENSSMAG00000023429	ENSSMAG00000006527	ENSSMAG00000006499	ENSSMAG00000006440	ENSSMAG00000006406 #20	ENSSMAG00000006394 #21	ENSSMAG00000006350 #22	ENSSMAG00000033433	ENSSMAG00000006226	ENSSMAG00000006185	ENSSMAG00000006159	ENSSMAG00000024919	ENSSMAG00000023613	ENSSMAG00000006132	ENSSMAG00000005990	ENSSMAG00000005933	nicn1 (ENSSMAG00000005914)	ENSSMAG00000022100	ENSSMAG00000025744	ENSSMAG00000027780	ENSSMAG00000034605	ENSSMAG00000005893
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g
Tetraodontidae	ANCESTRAL SPECIES	179										ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004922	ENSTNIG00000004915	ARFGEF2 (ENSTNIG00000004914)	bcl2l1 (ENSTNIG00000004913)	ENSTNIG00000004900	ENSTNIG00000004899	ENSTNIG00000004893	zgc:112001 (ENSTNIG00000004892)	LRFN2 (ENSTNIG00000004891)	atp1a2a (ENSTNIG00000004890)	ENSTNIG00000004889	ENSTNIG00000004888	fli1rs (ENSTNIG00000004887)	ENSTNIG00000004886	DOCK3 (ENSTNIG00000004884)	mkrn2 (ENSTNIG00000004883) #22	FAM107A (ENSTNIG00000004882)	ENSTNIG00000000772	ENSTNIG00000004881	smpd4 (ENSTNIG00000004880)	DCAF1 (ENSTNIG00000004879)	CTNNA2 (ENSTNIG00000004878)	tmem167b (ENSTNIG00000004877)	MAPK14 (ENSTNIG00000004876)	ENSTNIG00000004875	ENSTNIG00000004873	ENSTNIG00000004871	ENSTNIG00000003241	ENSTNIG00000005340	ENSTNIG00000004860	smarca4a (ENSTNIG00000004859)
Fugu	MODERN SPECIES	10	zgc:109913 (ENSTRUG00000001475)	ENSTRUG00000026594	polr2j (ENSTRUG00000032405)	DNTTIP1 (ENSTRUG00000000728)	ENSTRUG00000026947	ENSTRUG00000021720	ENSTRUG00000033298	ENSTRUG00000027760	ENSTRUG00000032566	MKRN2OS (ENSTRUG00000031839) #21	ENSTRUG00000004124 #20	ENSTRUG00000031743	rbm39a (ENSTRUG00000021378)	ENSTRUG00000031224 #20	MKRN2OS (ENSTRUG00000029635) #21	mkrn2 (ENSTRUG00000003156) #22	ENSTRUG00000020229	ENSTRUG00000026378	ENSTRUG00000003638	ENSTRUG00000026113	ENSTRUG00000028895	ENSTRUG00000028985	ENSTRUG00000030913	ENSTRUG00000033445	matn4 (ENSTRUG00000000492)	RBPJL (ENSTRUG00000030033)	ENSTRUG00000033248	KCNS1 (ENSTRUG00000032761)	ENSTRUG00000000941	cox6c (ENSTRUG00000001090)	ENSTRUG00000021176
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g
Eupecaria_C	ANCESTRAL SPECIES	41	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	47	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00940000169528	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561
European seabass	MODERN SPECIES	42	ENSDLAG00005029211	zgc:109913 (ENSDLAG00005026801)	ube2c (ENSDLAG00005019745)	ENSDLAG00005029053	pcif1 (ENSDLAG00005015241)	ENSDLAG00005016873	ENSDLAG00005026960	ENSDLAG00005027529	ENSDLAG00005028434	ENSDLAG00005030993	ENSDLAG00005026833	ENSDLAG00005026968 #20	ENSDLAG00005028761 #21	ENSDLAG00005034482	ENSDLAG00005027455	ENSDLAG00005003526 #22
Large yellow croaker	MODERN SPECIES	478	SDC4 (ENSLCRG00005004798)	oser1 (ENSLCRG00005004797)	ENSLCRG00005004796	rbm15b (ENSLCRG00005004794)	manf (ENSLCRG00005004793)	pcbp4 (ENSLCRG00005004788)	dag1 (ENSLCRG00005004787)	ENSLCRG00005004784	ENSLCRG00005004781	ENSLCRG00005004778	nicn1 (ENSLCRG00005004775)	ENSLCRG00005004770	GRM7 (ENSLCRG00005004674)	ENSLCRG00005004672	ENSLCRG00005004671	mkrn2 (ENSLCRG00005004669) #22	ENSLCRG00005004668	PIK3C2B (ENSLCRG00005004388)	ENSLCRG00005004379	ASCL5 (ENSLCRG00005004377)	AMIGO3 (ENSLCRG00005004375)	RNF123 (ENSLCRG00005001426)	si:ch211-15p9.2 (ENSLCRG00005001330)	tsen2 (ENSLCRG00005001328) #20	ENSLCRG00005001327	isy1 (ENSLCRG00005001325)	ENSLCRG00005001323	ENSLCRG00005001320	pcif1 (ENSLCRG00005001245)	DNTTIP1 (ENSLCRG00005001231)	polr2j (ENSLCRG00005001228)
Gilthead seabream	MODERN SPECIES	20	snrpb (ENSSAUG00010009296)	ENSSAUG00010009300	ENSSAUG00010009302	ENSSAUG00010009305	zgc:109913 (ENSSAUG00010009306)	ube2c (ENSSAUG00010009309)	polr2j (ENSSAUG00010009313)	DNTTIP1 (ENSSAUG00010009314)	pcif1 (ENSSAUG00010009318)	ENSSAUG00010009335	isy1 (ENSSAUG00010009336)	si:ch211-15p9.2 (ENSSAUG00010009338)	rbm39a (ENSSAUG00010009342)	ENSSAUG00010009670 #20	ENSSAUG00010009672	mkrn2 (ENSSAUG00010009678) #22	FAM107A (ENSSAUG00010009681)	PIK3C2B (ENSSAUG00010009714)	ENSSAUG00010012206	ENSSAUG00010012207	aldh4a1 (ENSSAUG00010012211)	RNF123 (ENSSAUG00010012258)	AMIGO3 (ENSSAUG00010013828)	ENSSAUG00010013829	ENSSAUG00010013830	ENSSAUG00010013831	ENSSAUG00010013832	nicn1 (ENSSAUG00010013835)	dag1 (ENSSAUG00010013837)	ENSSAUG00010013840	ENSSAUG00010013846
Perciformes	ANCESTRAL SPECIES		ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00940000154856.A.b.e.b	ENSGT00390000010760.e.a	ENSGT00390000008429.e.a	ENSGT00940000159711.g	ENSGT00940000160561	ENSGT00390000007160.a.a
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156368.a	ENSGT00940000154468.tb.a	ENSGT00390000013266 #20	ENSGT00390000003839.a #21	ENSGT01030000235208	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00940000163190.h.a.b	ENSGT00940000155326.b	ENSGT00940000160937	ENSGT00940000158986	ENSGT00940000153717.a.b	ENSGT00390000014105	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00390000014941	ENSGT00390000012257	ENSGT00950000183202.a.a
Lumpfish	MODERN SPECIES	20	ENSCLMG00005003835	ENSCLMG00005003838	zgc:109913 (ENSCLMG00005003839)	ube2c (ENSCLMG00005003843)	polr2j (ENSCLMG00005003876)	DNTTIP1 (ENSCLMG00005003877)	pcif1 (ENSCLMG00005003882)	ENSCLMG00005003886	isy1 (ENSCLMG00005003889)	ENSCLMG00005003891	si:ch211-15p9.2 (ENSCLMG00005003892)	ENSCLMG00005003893	tsen2 (ENSCLMG00005004006) #20	ENSCLMG00005004007 #21	ENSCLMG00005004008	mkrn2 (ENSCLMG00005004009) #22	ENSCLMG00005004010	PIK3C2B (ENSCLMG00005003083)	ENSCLMG00005007758	ASCL5 (ENSCLMG00005007759)	ENSCLMG00005007760	aldh4a1 (ENSCLMG00005007771)	PTPRT (ENSCLMG00005008937)	ENSCLMG00005009208	rspo4 (ENSCLMG00005009209)	CHD6 (ENSCLMG00005009283)	ENSCLMG00005018887	ENSCLMG00005018889	blcap (ENSCLMG00005018891)	mcm2 (ENSCLMG00005018892)	pigu (ENSCLMG00005018982)
Stickleback	MODERN SPECIES	17	ENSGACG00000003210	ctsa (ENSGACG00000003218)	snrpb (ENSGACG00000003262)	ENSGACG00000003282	zgc:109913 (ENSGACG00000003284)	ube2c (ENSGACG00000003290)	polr2j (ENSGACG00000003310)	DNTTIP1 (ENSGACG00000003311)	pcif1 (ENSGACG00000003325)	ENSGACG00000003330	isy1 (ENSGACG00000003342)	si:ch211-15p9.2 (ENSGACG00000003371)	rbm39a (ENSGACG00000003376)	tsen2 (ENSGACG00000003387) #20	MKRN2OS (ENSGACG00000003394) #21	mkrn2 (ENSGACG00000003396) #22	ENSGACG00000003413	ENSGACG00000003417	ENSGACG00000003419	hoxb13a (ENSGACG00000003421)	aldh4a1 (ENSGACG00000003426)	ENSGACG00000003484	LSM3 (ENSGACG00000003488) #37	slc6a6b (ENSGACG00000003490)	GRIP2 (ENSGACG00000003495)	RIMS4 (ENSGACG00000003513)	YWHAB (ENSGACG00000003522)	ENSGACG00000003551	ENSGACG00000003555	dnase1l4.1 (ENSGACG00000003559)	ENSGACG00000003568
Perciformes_a	ANCESTRAL SPECIES	89													ENSGT00390000014109	ENSGT00940000154468.tb.a	ENSGT00390000003839.a #21	ENSGT00950000183077.a.b #22	ENSGT00390000011228.b.a.e.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000163864	ENSGT00560000077335	ENSGT00940000155781	ENSGT00950000183146.b.b
Pike perch	MODERN SPECIES	301													isy1 (ENSSLUG00000021098)	rbm39a (ENSSLUG00000020924)	MKRN2OS (ENSSLUG00000020903) #21	mkrn2 (ENSSLUG00000020895) #22	ENSSLUG00000020890	PIK3C2B (ENSSLUG00000019973)	ENSSLUG00000019917	ASCL5 (ENSSLUG00000019913)	ENSSLUG00000019910	ENSSLUG00000019907	ENSSLUG00000019903	aldh4a1 (ENSSLUG00000019076)	RNF123 (ENSSLUG00000018767)	AMIGO3 (ENSSLUG00000018731)
Tiger tail seahorse	MODERN SPECIES	295	snrpb (ENSHCOG00000014888)	ENSHCOG00000014879	zgc:109913 (ENSHCOG00000014860)	ube2c (ENSHCOG00000014848)	DNTTIP1 (ENSHCOG00000014830)	polr2j (ENSHCOG00000014827)	pcif1 (ENSHCOG00000014823)	HDHD5 (ENSHCOG00000014795)	isy1 (ENSHCOG00000014775)	ENSHCOG00000014737	si:ch211-15p9.2 (ENSHCOG00000014721)	rbm39a (ENSHCOG00000014668)	ENSHCOG00000014632 #20	ENSHCOG00000014625 #21	ENSHCOG00000014610	mkrn2 (ENSHCOG00000014604) #22	FAM107A (ENSHCOG00000014565)	PIK3C2B (ENSHCOG00000000710)	ENSHCOG00000014417	aldh4a1 (ENSHCOG00000014399)	RNF123 (ENSHCOG00000014368)	AMIGO3 (ENSHCOG00000014318)	ENSHCOG00000014312	dag1 (ENSHCOG00000014265)	rbm15b (ENSHCOG00000014262)	manf (ENSHCOG00000014258)	ENSHCOG00000014246	sdc4 (ENSHCOG00000014227)	uqcc1 (ENSHCOG00000014217)	ENSHCOG00000014129	eif6 (ENSHCOG00000014120)
Pinecone sodierfish	MODERN SPECIES	19	trib3 (ENSMMDG00005010013)	pnp4a (ENSMMDG00005010023)	REM1 (ENSMMDG00005010198)	st3gal8 (ENSMMDG00005010238)	ENSMMDG00005010247	HTD2 (ENSMMDG00005010249)	ENSMMDG00005010251	cpne1 (ENSMMDG00005010269)	rbm12 (ENSMMDG00005011245)	nfs1 (ENSMMDG00005011282)	si:ch211-15p9.2 (ENSMMDG00005013091)	rbm39a (ENSMMDG00005013094)	ENSMMDG00005013237	ENSMMDG00005013239	ENSMMDG00005013242 #21	mkrn2 (ENSMMDG00005013246) #22	ENSMMDG00005013255	isy1 (ENSMMDG00005013257)	ENSMMDG00005013263	pcif1 (ENSMMDG00005013278)	ENSMMDG00005013309	polr2j (ENSMMDG00005013312)	ube2c (ENSMMDG00005013313)	zgc:109913 (ENSMMDG00005013317)	ENSMMDG00005013318	snrpb (ENSMMDG00005013323)	ENSMMDG00005013325	ddx27 (ENSMMDG00005013342)	pltp (ENSMMDG00005013687)	ctsa (ENSMMDG00005013692)	KCNQ2 (ENSMMDG00005014475)
Cod	MODERN SPECIES	4	pcif1 (ENSGMOG00000018230)	ENSGMOG00000018215	ENSGMOG00000023449	ube2c (ENSGMOG00000018194)	zgc:109913 (ENSGMOG00000018184)	ENSGMOG00000027984	ENSGMOG00000018161	ENSGMOG00000029077	ENSGMOG00000016662	ENSGMOG00000030222	ENSGMOG00000032377	tsen2 (ENSGMOG00000024153) #20	ENSGMOG00000022525 #21	ENSGMOG00000023593	ENSGMOG00000035527 #21	mkrn2 (ENSGMOG00000018490) #22	ENSGMOG00000007798	isy1 (ENSGMOG00000005635)	ENSGMOG00000009106	ENSGMOG00000029915	RBM39 (ENSGMOG00000017567)	ENSGMOG00000009599	CPNE1 (ENSGMOG00000011530)	GLUT1 (ENSGMOG00000011678)	ENSGMOG00000022253	ENSGMOG00000025779	ENSGMOG00000010859	ENSGMOG00000000101	SPDEF (ENSGMOG00000000105)	pacsin1b (ENSGMOG00000000108)	nudt3b (ENSGMOG00000031793)
Spotted gar	MODERN SPECIES	671	nol8 (ENSLOCG00000013864)	ENSLOCG00000013869	iars1 (ENSLOCG00000013871)	atp2b2 (ENSLOCG00000013890)	SLC6A11 (ENSLOCG00000013904) #7	slc6a1a (ENSLOCG00000013915) #8	HRH1 (ENSLOCG00000013921) #10	ATG7 (ENSLOCG00000013924) #11	vgll4b (ENSLOCG00000013927) #12	tamm41 (ENSLOCG00000013931) #13	syn2a (ENSLOCG00000013941) #14	timp4.2 (ENSLOCG00000013951) #15	PPARG (ENSLOCG00000013954) #19	tsen2 (ENSLOCG00000013958) #20	MKRN2OS (ENSLOCG00000013968) #21	mkrn2 (ENSLOCG00000013970) #22	raf1b (ENSLOCG00000013974) #23	cnbpb (ENSLOCG00000013985)	isy1 (ENSLOCG00000013988)	zgc:77375 (ENSLOCG00000013994)	rab43 (ENSLOCG00000014001)	nuf2 (ENSLOCG00000014004)	nuf2 (ENSLOCG00000014009)	ENSLOCG00000018261	GP9 (ENSLOCG00000018262)	ENSLOCG00000014014	ENSLOCG00000014017	acad9 (ENSLOCG00000014020)	IQSEC1 (ENSLOCG00000014026) #28	NUP210 (ENSLOCG00000014031) #29	hdac11 (ENSLOCG00000014033) #30
Reedfish	MODERN SPECIES	9	nol8 (ENSECRG00000018962)	iars1 (ENSECRG00000019013)	ENSECRG00000019049	ENSECRG00000019113	SLC6A11 (ENSECRG00000019456) #7	slc6a1a (ENSECRG00000019515) #8	HRH1 (ENSECRG00000019568) #10	ATG7 (ENSECRG00000019598) #11	vgll4b (ENSECRG00000019720) #12	tamm41 (ENSECRG00000020546) #13	syn2a (ENSECRG00000020574) #14	timp4.2 (ENSECRG00000020586) #15	PPARG (ENSECRG00000020604) #19	TSEN2 (ENSECRG00000020616) #20	MKRN2OS (ENSECRG00000020632) #21	mkrn2 (ENSECRG00000020646) #22	raf1b (ENSECRG00000020686) #23	cnbpb (ENSECRG00000020753)	isy1 (ENSECRG00000020784)	zgc:77375 (ENSECRG00000020811)	rab43 (ENSECRG00000020826)	nuf2 (ENSECRG00000020838)	ENSECRG00000020870	GP9 (ENSECRG00000020886)	EFCC1 (ENSECRG00000020895)	ENSECRG00000020909	acad9 (ENSECRG00000020941)	IQSEC1 (ENSECRG00000020985) #28	NUP210 (ENSECRG00000021042) #29	NUP210 (ENSECRG00000021120) #29	hdac11 (ENSECRG00000021200) #30
Elephant shark	MODERN SPECIES	1592											syn2a (ENSCMIG00000010866) #14	TIMP4 (ENSCMIG00000010881) #15	PPARG (ENSCMIG00000010883) #19	tsen2 (ENSCMIG00000010886) #20	mkrn2os (ENSCMIG00000010887) #21	mkrn2 (ENSCMIG00000010891) #22	raf1b (ENSCMIG00000010901) #23	cnbpb (ENSCMIG00000010936)	isy1 (ENSCMIG00000010938)	zgc:77375 (ENSCMIG00000010950)	rab43 (ENSCMIG00000010951)	ENSCMIG00000010954	ENSCMIG00000010960	EFCC1 (ENSCMIG00000010962)	ENSCMIG00000010964	acad9 (ENSCMIG00000010969)	IQSEC1 (ENSCMIG00000010972) #28	NUP210 (ENSCMIG00000011053) #29	hdac11 (ENSCMIG00000011388) #30	FBLN2 (ENSCMIG00000011392) #31	wnt7aa (ENSCMIG00000011404) #33
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000183077.a.b #22
Hagfish	MODERN SPECIES	513	ENSEBUG00000013385	wls (ENSEBUG00000009888)	ENSEBUG00000004452	kcnv2b (ENSEBUG00000006677)	osbpl9 (ENSEBUG00000010125)	ENSEBUG00000001165	ENSEBUG00000001991	ENSEBUG00000007732	ENSEBUG00000016490	ENSEBUG00000009219	ENSEBUG00000016051	ENSEBUG00000008087	ENSEBUG00000010533	ENSEBUG00000001288	ENSEBUG00000012213	mkrn2 (ENSEBUG00000004539) #22	ENSEBUG00000010960	ENSEBUG00000011208	ENSEBUG00000002509	ENSEBUG00000016624	ENSEBUG00000010621	ENSEBUG00000004390	ENSEBUG00000012616	ENSEBUG00000014465	ENSEBUG00000014881	ENSEBUG00000001451	ENSEBUG00000015427	ENSEBUG00000011649	GJD3 (ENSEBUG00000007303)	ENSEBUG00000008213
Lamprey	MODERN SPECIES	1839																ENSPMAG00000001072 #22	ENSPMAG00000001073	hsp90b1 (ENSPMAG00000001077)	uqcc6 (ENSPMAG00000001120)	UQCC5 (ENSPMAG00000001121)