Murinae	ANCESTRAL SPECIES	16	ENSGT00740000115687	ENSGT00940000159319 #8	ENSGT00990000203619.B #9	ENSGT00940000158925 #10	ENSGT00950000183202.b #11	ENSGT01040000240444.A.a.a.a.a #12	ENSGT00950000183115.b.a #13	ENSGT00390000012063 #14	ENSGT00390000003338 #15	ENSGT00390000010170.a.b #16	ENSGT01050000244937.a.a #17	ENSGT00390000011864 #18	ENSGT00940000159528 #19	ENSGT00940000160585 #20	ENSGT00710000106860 #21	ENSGT00950000183097.a.a.b #22	ENSGT00940000159160 #23	ENSGT00730000111163 #24	ENSGT00940000161772 #25	ENSGT00940000153137.a.b.b.a #26	ENSGT00940000153655.A.a	ENSGT00390000015682 #28	ENSGT00940000158961 #29	ENSGT00390000006051.a.b.b.c.b.c.a #30	ENSGT00390000016051 #31	ENSGT00940000159552 #32	ENSGT00390000012569.b #33	ENSGT00390000003758 #34	ENSGT00940000159144.B #35	ENSGT00940000162467.b #36	ENSGT00390000000693 #37
Mus	ANCESTRAL SPECIES	8	ENSGT00740000115687	ENSGT00940000159319 #8	ENSGT00990000203619.B #9	ENSGT00940000158925 #10	ENSGT00950000183202.b #11	ENSGT01040000240444.A.a.a.a.a #12	ENSGT00950000183115.b.a #13	ENSGT00390000012063 #14	ENSGT00390000003338 #15	ENSGT00390000010170.a.b #16	ENSGT01050000244937.a.a #17	ENSGT00390000011864 #18	ENSGT00940000159528 #19	ENSGT00940000160585 #20	ENSGT00710000106860 #21	ENSGT00950000183097.a.a.b #22	ENSGT00940000159160 #23	ENSGT00730000111163 #24	ENSGT00940000161772 #25	ENSGT00940000153137.a.b.b.a #26	ENSGT00940000153655.A.a	ENSGT00390000015682 #28	ENSGT00940000158961 #29	ENSGT00390000006051.a.b.b.c.b.c.a #30	ENSGT00390000016051 #31	ENSGT00940000159552 #32	ENSGT00390000012569.b #33	ENSGT00390000003758 #34	ENSGT00940000159144.B #35	ENSGT00940000162467.b #36	ENSGT00390000000693 #37
Mus_A	ANCESTRAL SPECIES	12	ENSGT00740000115687	ENSGT00940000159319 #8	ENSGT00990000203619.B #9	ENSGT00940000158925 #10	ENSGT00950000183202.b #11	ENSGT01040000240444.A.a.a.a.a #12	ENSGT00950000183115.b.a #13	ENSGT00390000012063 #14	ENSGT00390000003338 #15	ENSGT00390000010170.a.b #16	ENSGT01050000244937.a.a #17	ENSGT00390000011864 #18	ENSGT00940000159528 #19	ENSGT00940000160585 #20	ENSGT00710000106860 #21	ENSGT00950000183097.a.a.b #22	ENSGT00940000159160 #23	ENSGT00730000111163 #24	ENSGT00940000161772 #25	ENSGT00940000153137.a.b.b.a #26	ENSGT00940000153655.A.a	ENSGT00390000015682 #28	ENSGT00940000158961 #29	ENSGT00390000006051.a.b.b.c.b.c.a #30	ENSGT00390000016051 #31	ENSGT00940000159552 #32	ENSGT00390000012569.b #33	ENSGT00390000003758 #34	ENSGT00940000159144.B #35	ENSGT00940000162467.b #36	ENSGT00390000000693 #37
Ryukyu mouse	MODERN SPECIES	5	Gfra2 (MGP_CAROLIEiJ_G0019495) #7	Fndc3a (MGP_CAROLIEiJ_G0019496) #8	Cysltr2 (MGP_CAROLIEiJ_G0019497) #9	Rcbtb2 (MGP_CAROLIEiJ_G0019498) #10	Rb1 (MGP_CAROLIEiJ_G0019499) #11	Lpar6 (MGP_CAROLIEiJ_G0019500) #12	Itm2b (MGP_CAROLIEiJ_G0019501) #13	Med4 (MGP_CAROLIEiJ_G0019502) #14	Nudt15 (MGP_CAROLIEiJ_G0019503) #15	Sucla2 (MGP_CAROLIEiJ_G0019504) #16	Htr2a (MGP_CAROLIEiJ_G0019505) #17	Esd (MGP_CAROLIEiJ_G0019506) #18	Lrch1 (MGP_CAROLIEiJ_G0019507) #19	Rubcnl (MGP_CAROLIEiJ_G0019508) #20	Lrrc63 (MGP_CAROLIEiJ_G0019509) #21	Lcp1 (MGP_CAROLIEiJ_G0019510) #22	Cpb2 (MGP_CAROLIEiJ_G0019511) #23	Zc3h13 (MGP_CAROLIEiJ_G0019512) #24	Siah3 (MGP_CAROLIEiJ_G0019513) #25	Cby2 (MGP_CAROLIEiJ_G0019514) #26	MGP_CAROLIEiJ_G0019515 #27	Cog3 (MGP_CAROLIEiJ_G0019516) #28	Slc25a30 (MGP_CAROLIEiJ_G0019517) #29	Tpt1 (MGP_CAROLIEiJ_G0019518) #30	Gtf2f2 (MGP_CAROLIEiJ_G0019519) #31	Kctd4 (MGP_CAROLIEiJ_G0019520) #32	Gpalpp1 (MGP_CAROLIEiJ_G0019521) #33	Nufip1 (MGP_CAROLIEiJ_G0019522) #34	Tsc22d1 (MGP_CAROLIEiJ_G0019523) #35	Serp2 (MGP_CAROLIEiJ_G0019524) #36	MGP_CAROLIEiJ_G0019525 #37
Mus_B	ANCESTRAL SPECIES	11	ENSGT00740000115687	ENSGT00940000159319 #8	ENSGT00990000203619.B #9	ENSGT00940000158925 #10	ENSGT00950000183202.b #11	ENSGT01040000240444.A.a.a.a.a #12	ENSGT00950000183115.b.a #13	ENSGT00390000012063 #14	ENSGT00390000003338 #15	ENSGT00390000010170.a.b #16	ENSGT01050000244937.a.a #17	ENSGT00390000011864.db #18	ENSGT00940000159528 #19	ENSGT00940000160585 #20	ENSGT00710000106860 #21	ENSGT00950000183097.a.a.b #22	ENSGT00940000159160 #23	ENSGT00730000111163 #24	ENSGT00940000161772 #25	ENSGT00940000153137.a.b.b.a #26	ENSGT00940000153655.A.a	ENSGT00390000015682 #28	ENSGT00940000158961 #29	ENSGT00390000006051.a.b.b.c.b.c.a #30	ENSGT00390000016051 #31	ENSGT00940000159552 #32	ENSGT00390000012569.b #33	ENSGT00390000003758 #34	ENSGT00940000159144.B #35	ENSGT00940000162467.b #36	ENSGT00390000000693 #37
Mus_C	ANCESTRAL SPECIES	20	ENSGT00740000115687	ENSGT00940000159319 #8	ENSGT00990000203619.B #9	ENSGT00940000158925 #10	ENSGT00950000183202.b #11	ENSGT01040000240444.A.a.a.a.a #12	ENSGT00950000183115.b.a #13	ENSGT00390000012063 #14	ENSGT00390000003338 #15	ENSGT00390000010170.a.b #16	ENSGT01050000244937.a.a #17	ENSGT00390000011864.db #18	ENSGT00940000159528 #19	ENSGT00940000160585 #20	ENSGT00710000106860 #21	ENSGT00950000183097.a.a.b #22	ENSGT00940000159160 #23	ENSGT00730000111163 #24	ENSGT00940000161772 #25	ENSGT00940000153137.a.b.b.a #26	ENSGT00520000061084 #27	ENSGT00390000015682 #28	ENSGT00940000158961 #29	ENSGT00390000006051.a.b.b.c.b.c.a #30	ENSGT00390000016051 #31	ENSGT00940000159552 #32	ENSGT00390000012569.b #33	ENSGT00390000003758 #34	ENSGT00940000159144.B #35	ENSGT00940000162467.b #36	ENSGT00390000000693 #37
Steppe mouse	MODERN SPECIES	3340		ENSMSIG00000020528	Itm2b (ENSMSIG00000020537) #13	ENSMSIG00000020558	Med4 (ENSMSIG00000020566) #14	Nudt15 (ENSMSIG00000020586) #15	Sucla2 (ENSMSIG00000020594) #16	ENSMSIG00000020657	ENSMSIG00000020679	Htr2a (ENSMSIG00000020690) #17	Esd (ENSMSIG00000020709) #18	Lrch1 (ENSMSIG00000020905) #19	ENSMSIG00000021013	Rubcnl (ENSMSIG00000021027) #20	Lrrc63 (ENSMSIG00000021056) #21	Lcp1 (ENSMSIG00000021079) #22	Cpb2 (ENSMSIG00000021306) #23	Zc3h13 (ENSMSIG00000021317) #24	Siah3 (ENSMSIG00000021424) #25	Cby2 (ENSMSIG00000021441) #26	ENSMSIG00000021463 #27	Cog3 (ENSMSIG00000021489) #28	ENSMSIG00000021594 #29	ENSMSIG00000021620 ##30	Gtf2f2 (ENSMSIG00000021660) #31	ENSMSIG00000021679	Kctd4 (ENSMSIG00000021688) #32	Gpalpp1 (ENSMSIG00000021703) #33	Nufip1 (ENSMSIG00000021714) #34	Tsc22d1 (ENSMSIG00000021724) #35	ENSMSIG00000021792 #36
spretus	MODERN SPECIES	5	MGP_SPRETEiJ_G0020390	Cysltr2 (MGP_SPRETEiJ_G0020391) #9	Rcbtb2 (MGP_SPRETEiJ_G0020392) #10	Rb1 (MGP_SPRETEiJ_G0020393) #11	Lpar6 (MGP_SPRETEiJ_G0020394) #12	Itm2b (MGP_SPRETEiJ_G0020395) #13	Med4 (MGP_SPRETEiJ_G0020396) #14	MGP_SPRETEiJ_G0020397 #15	MGP_SPRETEiJ_G0020398 #15	Sucla2 (MGP_SPRETEiJ_G0020399) #16	Htr2a (MGP_SPRETEiJ_G0020400) #17	Esd (MGP_SPRETEiJ_G0020401) #18	Lrch1 (MGP_SPRETEiJ_G0020402) #19	Rubcnl (MGP_SPRETEiJ_G0020403) #20	Lrrc63 (MGP_SPRETEiJ_G0020404) #21	Lcp1 (MGP_SPRETEiJ_G0020405) #22	Cpb2 (MGP_SPRETEiJ_G0020406) #23	Zc3h13 (MGP_SPRETEiJ_G0020407) #24	MGP_SPRETEiJ_G0020408	Siah3 (MGP_SPRETEiJ_G0020409) #25	Cby2 (MGP_SPRETEiJ_G0020410) #26	MGP_SPRETEiJ_G0020411 #27	Cog3 (MGP_SPRETEiJ_G0020412) #28	Slc25a30 (MGP_SPRETEiJ_G0020413) #29	Tpt1 (MGP_SPRETEiJ_G0020414) #30	Gtf2f2 (MGP_SPRETEiJ_G0020415) #31	Kctd4 (MGP_SPRETEiJ_G0020416) #32	Gpalpp1 (MGP_SPRETEiJ_G0020417) #33	Nufip1 (MGP_SPRETEiJ_G0020418) #34	Tsc22d1 (MGP_SPRETEiJ_G0020419) #35	Serp2 (MGP_SPRETEiJ_G0020420) #36
Mouse	MODERN SPECIES	5	Gm9195 (ENSMUSG00000109446)	Fndc3a (ENSMUSG00000033487) #8	Cysltr2 (ENSMUSG00000033470) #9	Rcbtb2 (ENSMUSG00000022106) #10	Rb1 (ENSMUSG00000022105) #11	Lpar6 (ENSMUSG00000033446) #12	Itm2b (ENSMUSG00000022108) #13	Med4 (ENSMUSG00000022109) #14	Nudt15 (ENSMUSG00000033405) #15	Sucla2 (ENSMUSG00000022110) #16	Htr2a (ENSMUSG00000034997) #17	Esd (ENSMUSG00000021996) #18	Lrch1 (ENSMUSG00000068015) #19	Rubcnl (ENSMUSG00000034959) #20	Lrrc63 (ENSMUSG00000021997) #21	Lcp1 (ENSMUSG00000021998) #22	Cpb2 (ENSMUSG00000021999) #23	Zc3h13 (ENSMUSG00000022000) #24	Siah3 (ENSMUSG00000091722) #25	Cby2 (ENSMUSG00000034913) #26	Erich6b (ENSMUSG00000022002)	Cog3 (ENSMUSG00000034893) #28	Slc25a30 (ENSMUSG00000022003) #29	Tpt1 (ENSMUSG00000060126) #30	Gtf2f2 (ENSMUSG00000067995) #31	Kctd4 (ENSMUSG00000046523) #32	Gpalpp1 (ENSMUSG00000022008) #33	Nufip1 (ENSMUSG00000022009) #34	Tsc22d1 (ENSMUSG00000022010) #35	Serp2 (ENSMUSG00000052584) #36	Lacc1 (ENSMUSG00000044350) #37
Shrew mouse	MODERN SPECIES	21	Fndc3a (MGP_PahariEiJ_G0030513) #8	Cysltr2 (MGP_PahariEiJ_G0030514) #9	Rcbtb2 (MGP_PahariEiJ_G0030515) #10	Rb1 (MGP_PahariEiJ_G0030516) #11	Lpar6 (MGP_PahariEiJ_G0030517) #12	Itm2b (MGP_PahariEiJ_G0030518) #13	Med4 (MGP_PahariEiJ_G0030519) #14	MGP_PahariEiJ_G0030520 #15	MGP_PahariEiJ_G0030521 #15	Sucla2 (MGP_PahariEiJ_G0030522) #16	Htr2a (MGP_PahariEiJ_G0030523) #17	Esd (MGP_PahariEiJ_G0030524) #18	Lrch1 (MGP_PahariEiJ_G0030525) #19	Rubcnl (MGP_PahariEiJ_G0030526) #20	Lrrc63 (MGP_PahariEiJ_G0030527) #21	Lcp1 (MGP_PahariEiJ_G0030528) #22	Cpb2 (MGP_PahariEiJ_G0030529) #23	Zc3h13 (MGP_PahariEiJ_G0030530) #24	Siah3 (MGP_PahariEiJ_G0030531) #25	Cby2 (MGP_PahariEiJ_G0030532) #26	MGP_PahariEiJ_G0030533 #27	Cog3 (MGP_PahariEiJ_G0030534) #28	Slc25a30 (MGP_PahariEiJ_G0030535) #29	Tpt1 (MGP_PahariEiJ_G0030536) ##30	Gtf2f2 (MGP_PahariEiJ_G0030537) #31	Kctd4 (MGP_PahariEiJ_G0030538) #32	Gpalpp1 (MGP_PahariEiJ_G0030539) #33	Nufip1 (MGP_PahariEiJ_G0030540) #34	Tsc22d1 (MGP_PahariEiJ_G0030541) #35	Serp2 (MGP_PahariEiJ_G0030542) #36	Lacc1 (MGP_PahariEiJ_G0030543) #37
Rat	MODERN SPECIES	6	Cysltr2 (ENSRNOG00000067464) #9	ENSRNOG00000067330	Rcbtb2 (ENSRNOG00000015054) #10	Rb1 (ENSRNOG00000016029) #11	Lpar6 (ENSRNOG00000015577) #12	Itm2b (ENSRNOG00000016271) #13	Med4 (ENSRNOG00000017170) #14	Nudt15 (ENSRNOG00000025239) #15	Sucla2 (ENSRNOG00000017481) #16	Htr2a (ENSRNOG00000010063) #17	Esd (ENSRNOG00000009512) #18	Lrch1 (ENSRNOG00000009412) #19	Rubcnl (ENSRNOG00000022760) #20	Lrrc63 (ENSRNOG00000038291) #21	Esco2-ps2 (ENSRNOG00000029520)	Lcp1 (ENSRNOG00000010319) #22	Cpb2 (ENSRNOG00000010935) #23	Zc3h13 (ENSRNOG00000011237) #24	Siah3 (ENSRNOG00000043061) #25	Cby2 (ENSRNOG00000047413) #26	Cog3 (ENSRNOG00000000155) #28	Slc25a30 (ENSRNOG00000001052) #29	Tpt1 (ENSRNOG00000001049) #30	Gtf2f2 (ENSRNOG00000029316) #31	Kctd4 (ENSRNOG00000050996) #32	Gpalpp1 (ENSRNOG00000001037) #33	Nufip1 (ENSRNOG00000001033) #34	ENSRNOG00000070802	Tsc22d1 (ENSRNOG00000001030) #35	Serp2 (ENSRNOG00000038228) #36	Lacc1 (ENSRNOG00000022094) #37