Glires ANCESTRAL SPECIES 22 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00390000015396 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000163647 Rodentia ANCESTRAL SPECIES 22 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00390000015396 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000163647 Rodentia_B ANCESTRAL SPECIES 25 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000163647 ENSGT00940000162467.b #37 Myomorpha ANCESTRAL SPECIES 32 ENSGT00940000159259.b ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000163647 ENSGT00940000162467.b #37 Muroidea ANCESTRAL SPECIES 25 ENSGT00940000159259.b ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000163647 ENSGT00940000162467.b #37 Muroidea_A ANCESTRAL SPECIES 10 ENSGT00740000115687 ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Murinae ANCESTRAL SPECIES 16 ENSGT00740000115687 ENSGT00940000159319 ENSGT00990000203619.B ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b.c.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Mus ANCESTRAL SPECIES 8 ENSGT00740000115687 ENSGT00940000159319 ENSGT00990000203619.B ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b.c.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Mus_A ANCESTRAL SPECIES 12 ENSGT00740000115687 ENSGT00940000159319 ENSGT00990000203619.B ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b.c.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Mus_B ANCESTRAL SPECIES 11 ENSGT00740000115687 ENSGT00940000159319 ENSGT00990000203619.B ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864.db #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b.c.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Mus_C ANCESTRAL SPECIES 20 ENSGT00740000115687 ENSGT00940000159319 ENSGT00990000203619.B ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864.db #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00520000061084 #27 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b.c.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Steppe mouse MODERN SPECIES 3340 ENSMSIG00000020528 #8 Itm2b (ENSMSIG00000020537) #9 ENSMSIG00000020558 #10 Med4 (ENSMSIG00000020566) #11 Nudt15 (ENSMSIG00000020586) #12 Sucla2 (ENSMSIG00000020594) #13 ENSMSIG00000020657 #14 ENSMSIG00000020679 #15 Htr2a (ENSMSIG00000020690) #16 Esd (ENSMSIG00000020709) #17 Lrch1 (ENSMSIG00000020905) #18 ENSMSIG00000021013 #19 Rubcnl (ENSMSIG00000021027) #20 Lrrc63 (ENSMSIG00000021056) #21 Lcp1 (ENSMSIG00000021079) #22 Cpb2 (ENSMSIG00000021306) #23 Zc3h13 (ENSMSIG00000021317) #24 Siah3 (ENSMSIG00000021424) #25 Cby2 (ENSMSIG00000021441) #26 ENSMSIG00000021463 #27 Cog3 (ENSMSIG00000021489) #28 ENSMSIG00000021594 #29 ENSMSIG00000021620 #30 Gtf2f2 (ENSMSIG00000021660) #31 ENSMSIG00000021679 #32 Kctd4 (ENSMSIG00000021688) #33 Gpalpp1 (ENSMSIG00000021703) #34 Nufip1 (ENSMSIG00000021714) #35 Tsc22d1 (ENSMSIG00000021724) #36 ENSMSIG00000021792 #37 spretus MODERN SPECIES 5 MGP_SPRETEiJ_G0020390 Cysltr2 (MGP_SPRETEiJ_G0020391) Rcbtb2 (MGP_SPRETEiJ_G0020392) Rb1 (MGP_SPRETEiJ_G0020393) Lpar6 (MGP_SPRETEiJ_G0020394) Itm2b (MGP_SPRETEiJ_G0020395) #9 Med4 (MGP_SPRETEiJ_G0020396) #11 MGP_SPRETEiJ_G0020397 #12 MGP_SPRETEiJ_G0020398 #12 Sucla2 (MGP_SPRETEiJ_G0020399) #13 Htr2a (MGP_SPRETEiJ_G0020400) #16 Esd (MGP_SPRETEiJ_G0020401) #17 Lrch1 (MGP_SPRETEiJ_G0020402) #18 Rubcnl (MGP_SPRETEiJ_G0020403) #20 Lrrc63 (MGP_SPRETEiJ_G0020404) #21 Lcp1 (MGP_SPRETEiJ_G0020405) #22 Cpb2 (MGP_SPRETEiJ_G0020406) #23 Zc3h13 (MGP_SPRETEiJ_G0020407) #24 MGP_SPRETEiJ_G0020408 Siah3 (MGP_SPRETEiJ_G0020409) #25 Cby2 (MGP_SPRETEiJ_G0020410) #26 MGP_SPRETEiJ_G0020411 #27 Cog3 (MGP_SPRETEiJ_G0020412) #28 Slc25a30 (MGP_SPRETEiJ_G0020413) #29 Tpt1 (MGP_SPRETEiJ_G0020414) ##30 Gtf2f2 (MGP_SPRETEiJ_G0020415) #31 Kctd4 (MGP_SPRETEiJ_G0020416) #33 Gpalpp1 (MGP_SPRETEiJ_G0020417) #34 Nufip1 (MGP_SPRETEiJ_G0020418) #35 Tsc22d1 (MGP_SPRETEiJ_G0020419) #36 Serp2 (MGP_SPRETEiJ_G0020420) #37 Mouse MODERN SPECIES 5 Gm9195 (ENSMUSG00000109446) Fndc3a (ENSMUSG00000033487) Cysltr2 (ENSMUSG00000033470) Rcbtb2 (ENSMUSG00000022106) Rb1 (ENSMUSG00000022105) Lpar6 (ENSMUSG00000033446) Itm2b (ENSMUSG00000022108) #9 Med4 (ENSMUSG00000022109) #11 Nudt15 (ENSMUSG00000033405) #12 Sucla2 (ENSMUSG00000022110) #13 Htr2a (ENSMUSG00000034997) #16 Esd (ENSMUSG00000021996) #17 Lrch1 (ENSMUSG00000068015) #18 Rubcnl (ENSMUSG00000034959) #20 Lrrc63 (ENSMUSG00000021997) #21 Lcp1 (ENSMUSG00000021998) #22 Cpb2 (ENSMUSG00000021999) #23 Zc3h13 (ENSMUSG00000022000) #24 Siah3 (ENSMUSG00000091722) #25 Cby2 (ENSMUSG00000034913) #26 Erich6b (ENSMUSG00000022002) Cog3 (ENSMUSG00000034893) #28 Slc25a30 (ENSMUSG00000022003) #29 Tpt1 (ENSMUSG00000060126) ##30 Gtf2f2 (ENSMUSG00000067995) #31 Kctd4 (ENSMUSG00000046523) #33 Gpalpp1 (ENSMUSG00000022008) #34 Nufip1 (ENSMUSG00000022009) #35 Tsc22d1 (ENSMUSG00000022010) #36 Serp2 (ENSMUSG00000052584) #37 Lacc1 (ENSMUSG00000044350) Ryukyu mouse MODERN SPECIES 5 Gfra2 (MGP_CAROLIEiJ_G0019495) Fndc3a (MGP_CAROLIEiJ_G0019496) Cysltr2 (MGP_CAROLIEiJ_G0019497) Rcbtb2 (MGP_CAROLIEiJ_G0019498) Rb1 (MGP_CAROLIEiJ_G0019499) Lpar6 (MGP_CAROLIEiJ_G0019500) Itm2b (MGP_CAROLIEiJ_G0019501) #9 Med4 (MGP_CAROLIEiJ_G0019502) #11 Nudt15 (MGP_CAROLIEiJ_G0019503) #12 Sucla2 (MGP_CAROLIEiJ_G0019504) #13 Htr2a (MGP_CAROLIEiJ_G0019505) #16 Esd (MGP_CAROLIEiJ_G0019506) #17 Lrch1 (MGP_CAROLIEiJ_G0019507) #18 Rubcnl (MGP_CAROLIEiJ_G0019508) #20 Lrrc63 (MGP_CAROLIEiJ_G0019509) #21 Lcp1 (MGP_CAROLIEiJ_G0019510) #22 Cpb2 (MGP_CAROLIEiJ_G0019511) #23 Zc3h13 (MGP_CAROLIEiJ_G0019512) #24 Siah3 (MGP_CAROLIEiJ_G0019513) #25 Cby2 (MGP_CAROLIEiJ_G0019514) #26 MGP_CAROLIEiJ_G0019515 #27 Cog3 (MGP_CAROLIEiJ_G0019516) #28 Slc25a30 (MGP_CAROLIEiJ_G0019517) #29 Tpt1 (MGP_CAROLIEiJ_G0019518) ##30 Gtf2f2 (MGP_CAROLIEiJ_G0019519) #31 Kctd4 (MGP_CAROLIEiJ_G0019520) #33 Gpalpp1 (MGP_CAROLIEiJ_G0019521) #34 Nufip1 (MGP_CAROLIEiJ_G0019522) #35 Tsc22d1 (MGP_CAROLIEiJ_G0019523) #36 Serp2 (MGP_CAROLIEiJ_G0019524) #37 MGP_CAROLIEiJ_G0019525 Shrew mouse MODERN SPECIES 21 Fndc3a (MGP_PahariEiJ_G0030513) Cysltr2 (MGP_PahariEiJ_G0030514) Rcbtb2 (MGP_PahariEiJ_G0030515) Rb1 (MGP_PahariEiJ_G0030516) Lpar6 (MGP_PahariEiJ_G0030517) Itm2b (MGP_PahariEiJ_G0030518) #9 Med4 (MGP_PahariEiJ_G0030519) #11 MGP_PahariEiJ_G0030520 #12 MGP_PahariEiJ_G0030521 #12 Sucla2 (MGP_PahariEiJ_G0030522) #13 Htr2a (MGP_PahariEiJ_G0030523) #16 Esd (MGP_PahariEiJ_G0030524) #17 Lrch1 (MGP_PahariEiJ_G0030525) #18 Rubcnl (MGP_PahariEiJ_G0030526) #20 Lrrc63 (MGP_PahariEiJ_G0030527) #21 Lcp1 (MGP_PahariEiJ_G0030528) #22 Cpb2 (MGP_PahariEiJ_G0030529) #23 Zc3h13 (MGP_PahariEiJ_G0030530) #24 Siah3 (MGP_PahariEiJ_G0030531) #25 Cby2 (MGP_PahariEiJ_G0030532) #26 MGP_PahariEiJ_G0030533 #27 Cog3 (MGP_PahariEiJ_G0030534) #28 Slc25a30 (MGP_PahariEiJ_G0030535) #29 Tpt1 (MGP_PahariEiJ_G0030536) ##30 Gtf2f2 (MGP_PahariEiJ_G0030537) #31 Kctd4 (MGP_PahariEiJ_G0030538) #33 Gpalpp1 (MGP_PahariEiJ_G0030539) #34 Nufip1 (MGP_PahariEiJ_G0030540) #35 Tsc22d1 (MGP_PahariEiJ_G0030541) #36 Serp2 (MGP_PahariEiJ_G0030542) #37 Lacc1 (MGP_PahariEiJ_G0030543) Rat MODERN SPECIES 6 Cysltr2 (ENSRNOG00000067464) ENSRNOG00000067330 Rcbtb2 (ENSRNOG00000015054) Rb1 (ENSRNOG00000016029) Lpar6 (ENSRNOG00000015577) Itm2b (ENSRNOG00000016271) #9 Med4 (ENSRNOG00000017170) #11 Nudt15 (ENSRNOG00000025239) #12 Sucla2 (ENSRNOG00000017481) #13 Htr2a (ENSRNOG00000010063) #16 Esd (ENSRNOG00000009512) #17 Lrch1 (ENSRNOG00000009412) #18 Rubcnl (ENSRNOG00000022760) #20 Lrrc63 (ENSRNOG00000038291) #21 Esco2-ps2 (ENSRNOG00000029520) Lcp1 (ENSRNOG00000010319) #22 Cpb2 (ENSRNOG00000010935) #23 Zc3h13 (ENSRNOG00000011237) #24 Siah3 (ENSRNOG00000043061) #25 Cby2 (ENSRNOG00000047413) #26 Cog3 (ENSRNOG00000000155) #28 Slc25a30 (ENSRNOG00000001052) #29 Tpt1 (ENSRNOG00000001049) ##30 Gtf2f2 (ENSRNOG00000029316) #31 Kctd4 (ENSRNOG00000050996) #33 Gpalpp1 (ENSRNOG00000001037) #34 Nufip1 (ENSRNOG00000001033) #35 ENSRNOG00000070802 Tsc22d1 (ENSRNOG00000001030) #36 Serp2 (ENSRNOG00000038228) #37 Lacc1 (ENSRNOG00000022094) Cricetidae ANCESTRAL SPECIES 15 ENSGT00740000115687 ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b.a #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 ENSGT00390000005130 Cricetinae ANCESTRAL SPECIES 18 ENSGT00740000115687 ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b ##30 ENSGT00940000159552 #33 ENSGT00390000016051 #31 ENSGT00390000012569.b.a #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 ENSGT00390000005130 Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 642 Gfra2 (ENSMAUG00000003686) Gm9195 (ENSMAUG00000017114) Fndc3a (ENSMAUG00000011429) ENSMAUG00000008735 Rcbtb2 (ENSMAUG00000013502) Lpar6 (ENSMAUG00000006841) Rb1 (ENSMAUG00000020865) Itm2b (ENSMAUG00000017281) #9 Med4 (ENSMAUG00000021269) #11 Nudt15 (ENSMAUG00000018405) #12 Sucla2 (ENSMAUG00000008374) #13 Htr2a (ENSMAUG00000011880) #16 Esd (ENSMAUG00000021229) #17 Lrch1 (ENSMAUG00000001816) #18 Lrrc63 (ENSMAUG00000017212) #21 ENSMAUG00000017813 #22 Cpb2 (ENSMAUG00000011270) #23 ENSMAUG00000005243 Siah3 (ENSMAUG00000016684) #25 Cby2 (ENSMAUG00000021027) #26 Cog3 (ENSMAUG00000018785) #28 Slc25a30 (ENSMAUG00000012973) #29 Tpt1 (ENSMAUG00000014012) ##30 Kctd4 (ENSMAUG00000005135) #33 Gtf2f2 (ENSMAUG00000018898) #31 Gpalpp1 (ENSMAUG00000021389) #34 Nufip1 (ENSMAUG00000021413) #35 ENSMAUG00000014274 Serp2 (ENSMAUG00000019897) #37 Lacc1 (ENSMAUG00000018912) ENSMAUG00000013996 Golden Hamster MODERN SPECIES 741 Spp2 (ENSMAUG00000019000) Sh3bp4 (ENSMAUG00000015955) Agap1 (ENSMAUG00000013197) Gbx2 (ENSMAUG00000021102) Asb18 (ENSMAUG00000011343) Iqca (ENSMAUG00000012478) Ackr3 (ENSMAUG00000001290) Cops8 (ENSMAUG00000016566) Col6a3 (ENSMAUG00000018474) Mlph (ENSMAUG00000012730) Prlh (ENSMAUG00000007380) Rab17 (ENSMAUG00000000642) ENSMAUG00000008054 Rbm44 (ENSMAUG00000022041) Ramp1 (ENSMAUG00000013655) ENSMAUG00000011807 #22 Ube2f (ENSMAUG00000016797) Scly (ENSMAUG00000015726) Espnl (ENSMAUG00000004027) Klhl30 (ENSMAUG00000020235) Erfe (ENSMAUG00000013436) ENSMAUG00000006511 Hes6 (ENSMAUG00000020931) Per2 (ENSMAUG00000012363) Traf3ip1 (ENSMAUG00000017577) Asb1 (ENSMAUG00000016956) ENSMAUG00000002516 Twist2 (ENSMAUG00000003118) Hdac4 (ENSMAUG00000021483) ENSMAUG00000015249 Or6b2b (ENSMAUG00000002845) Chinese hamster chok1gshd MODERN SPECIES 3 Gm9195 (ENSCGRG00001003097) Fndc3a (ENSCGRG00001020347) ENSCGRG00001010401 Rcbtb2 (ENSCGRG00001016446) Rb1 (ENSCGRG00001022172) Lpar6 (ENSCGRG00001011474) Itm2b (ENSCGRG00001015807) #9 Med4 (ENSCGRG00001018208) #11 Nudt15 (ENSCGRG00001001521) #12 SUCLA2 (ENSCGRG00001009190) #13 HTR2A (ENSCGRG00001000307) #16 ENSCGRG00001015731 #17 Lrch1 (ENSCGRG00001021051) #18 Rubcnl (ENSCGRG00001015225) #20 Lrrc63 (ENSCGRG00001021365) #21 Lcp1 (ENSCGRG00001021099) #22 Cpb2 (ENSCGRG00001000100) #23 Zc3h13 (ENSCGRG00001014490) #24 Siah3 (ENSCGRG00001022985) #25 Cby2 (ENSCGRG00001019775) #26 Cog3 (ENSCGRG00001023420) #28 Slc25a30 (ENSCGRG00001009475) #29 Tpt1 (ENSCGRG00001019454) ##30 Gtf2f2 (ENSCGRG00001015200) #31 Kctd4 (ENSCGRG00001001160) #33 Gpalpp1 (ENSCGRG00001020996) #34 Nufip1 (ENSCGRG00001012209) #35 Tsc22d1 (ENSCGRG00001001346) #36 Serp2 (ENSCGRG00001003518) #37 Lacc1 (ENSCGRG00001020034) Ccdc122 (ENSCGRG00001006861) Cricetidae_B ANCESTRAL SPECIES 11 ENSGT00740000115687 ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.b.c.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b.a #34 ENSGT00390000003758 #35 ENSGT00940000163647 ENSGT00940000162467.b #37 ENSGT00390000000693 ENSGT00390000005130 Prairie vole MODERN SPECIES 4 Gm9195 (ENSMOCG00000022806) Fndc3a (ENSMOCG00000018330) ENSMOCG00000007313 Rcbtb2 (ENSMOCG00000018787) Rb1 (ENSMOCG00000010218) Lpar6 (ENSMOCG00000007205) Itm2b (ENSMOCG00000021655) #9 Med4 (ENSMOCG00000002608) #11 Nudt15 (ENSMOCG00000003875) #12 ENSMOCG00000011477 #13 Htr2a (ENSMOCG00000012645) #16 ENSMOCG00000016070 #17 Lrch1 (ENSMOCG00000017560) #18 Rubcnl (ENSMOCG00000003331) #20 Lrrc63 (ENSMOCG00000018528) #21 Lcp1 (ENSMOCG00000010746) #22 Cpb2 (ENSMOCG00000006393) #23 ENSMOCG00000001346 Siah3 (ENSMOCG00000009347) #25 Cby2 (ENSMOCG00000014959) #26 Cog3 (ENSMOCG00000002598) #28 Slc25a30 (ENSMOCG00000010410) #29 ENSMOCG00000016698 ##30 Gtf2f2 (ENSMOCG00000020515) #31 Kctd4 (ENSMOCG00000008795) #33 ENSMOCG00000009812 #34 Nufip1 (ENSMOCG00000008223) #35 ENSMOCG00000018072 Serp2 (ENSMOCG00000022234) #37 Lacc1 (ENSMOCG00000011112) Enox1 (ENSMOCG00000012930) Northern American deer mouse MODERN SPECIES 22 ENSPEMG00000031384 ENSPEMG00000006635 Rb1 (ENSPEMG00000020245) Lpar6 (ENSPEMG00000012942) ENSPEMG00000029678 Itm2b (ENSPEMG00000020178) #9 Med4 (ENSPEMG00000000371) #11 Nudt15 (ENSPEMG00000013922) #12 Sucla2 (ENSPEMG00000020269) #13 ENSPEMG00000024389 Htr2a (ENSPEMG00000019339) #16 Esd (ENSPEMG00000019972) #17 Lrch1 (ENSPEMG00000019644) #18 Rubcnl (ENSPEMG00000008281) #20 Lrrc63 (ENSPEMG00000020509) #21 Lcp1 (ENSPEMG00000009810) #22 Cpb2 (ENSPEMG00000021086) #23 Zc3h13 (ENSPEMG00000021979) #24 Siah3 (ENSPEMG00000028254) #25 Cby2 (ENSPEMG00000020758) #26 Cog3 (ENSPEMG00000020827) #28 Slc25a30 (ENSPEMG00000022181) #29 Tpt1 (ENSPEMG00000001813) ##30 Gtf2f2 (ENSPEMG00000027889) #31 Kctd4 (ENSPEMG00000006357) #33 Gpalpp1 (ENSPEMG00000000218) #34 Nufip1 (ENSPEMG00000023639) #35 ENSPEMG00000012421 Tsc22d1 (ENSPEMG00000022760) #36 ENSPEMG00000024909 Lacc1 (ENSPEMG00000011166) Upper Galilee mountains blind mole rat MODERN SPECIES 1865 Atp12a (ENSNGAG00000019943) Fndc3a (ENSNGAG00000010472) ENSNGAG00000018220 Rcbtb2 (ENSNGAG00000001130) Rb1 (ENSNGAG00000018650) Lpar6 (ENSNGAG00000020986) Itm2b (ENSNGAG00000001145) #9 ENSNGAG00000019721 Med4 (ENSNGAG00000016010) #11 Nudt15 (ENSNGAG00000017219) #12 Sucla2 (ENSNGAG00000018304) #13 Htr2a (ENSNGAG00000003790) #16 Esd (ENSNGAG00000010945) #17 Lrch1 (ENSNGAG00000018822) #18 Lrrc63 (ENSNGAG00000020059) #21 Lcp1 (ENSNGAG00000000826) #22 Cpb2 (ENSNGAG00000014141) #23 Zc3h13 (ENSNGAG00000002157) #24 Siah3 (ENSNGAG00000012014) #25 ENSNGAG00000013989 Cby2 (ENSNGAG00000015369) #26 Lesser Egyptian jerboa MODERN SPECIES 126 Fndc3a (ENSJJAG00000014349) Cysltr2 (ENSJJAG00000012101) Rcbtb2 (ENSJJAG00000013527) Lpar6 (ENSJJAG00000013010) Rb1 (ENSJJAG00000011981) Itm2b (ENSJJAG00000010530) #9 Med4 (ENSJJAG00000010462) #11 ENSJJAG00000010126 #13 ENSJJAG00000009879 ENSJJAG00000012033 ENSJJAG00000006493 Htr2a (ENSJJAG00000005538) #16 Esd (ENSJJAG00000004979) #17 Lrch1 (ENSJJAG00000000346) #18 Rubcnl (ENSJJAG00000021497) #20 Lcp1 (ENSJJAG00000021331) #22 Cpb2 (ENSJJAG00000020705) #23 Zc3h13 (ENSJJAG00000019971) #24 ENSJJAG00000019522 Siah3 (ENSJJAG00000019440) #25 Cby2 (ENSJJAG00000019147) #26 Cog3 (ENSJJAG00000018271) #28 Slc25a30 (ENSJJAG00000017335) #29 ENSJJAG00000016940 ENSJJAG00000016541 ##30 Kctd4 (ENSJJAG00000012151) #33 Gtf2f2 (ENSJJAG00000015891) #31 Gpalpp1 (ENSJJAG00000015544) #34 Nufip1 (ENSJJAG00000015369) #35 ENSJJAG00000015078 Serp2 (ENSJJAG00000021557) #37 Kangaroo rat MODERN SPECIES 320 Fndc3a (ENSDORG00000000383) ENSDORG00000029762 ENSDORG00000016215 Rcbtb2 (ENSDORG00000013999) Lpar6 (ENSDORG00000013998) Rb1 (ENSDORG00000013995) Itm2b (ENSDORG00000025543) #9 Med4 (ENSDORG00000024480) #11 Nudt15 (ENSDORG00000003751) #12 Sucla2 (ENSDORG00000010319) #13 Htr2a (ENSDORG00000029019) #16 Esd (ENSDORG00000013997) #17 Lrch1 (ENSDORG00000013992) #18 ENSDORG00000024657 Rubcnl (ENSDORG00000014634) #20 Lcp1 (ENSDORG00000000603) #22 Cpb2 (ENSDORG00000000602) #23 Zc3h13 (ENSDORG00000000600) #24 Siah3 (ENSDORG00000024143) #25 Cby2 (ENSDORG00000026204) #26 Cog3 (ENSDORG00000002499) #28 Slc25a30 (ENSDORG00000004865) #29 Tpt1 (ENSDORG00000008518) ##30 Kctd4 (ENSDORG00000003773) #33 Gtf2f2 (ENSDORG00000002860) #31 Gpalpp1 (ENSDORG00000003360) #34 Nufip1 (ENSDORG00000003359) #35 ENSDORG00000025839 Serp2 (ENSDORG00000028153) #37 Lacc1 (ENSDORG00000015240) Ccdc122 (ENSDORG00000015236) Rodentia_A ANCESTRAL SPECIES 22 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00390000015396 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.a.a ##30 ENSGT00390000006051.b.f ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT01060000249039 Hystricomorpha ANCESTRAL SPECIES 25 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864.y #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00390000015396 ENSGT00940000158961 #29 ENSGT00390000006051.b.f.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000166021 ENSGT00940000163647 ENSGT00940000162467.b #37 Naked mole-rat female MODERN SPECIES 2 RB1 (ENSHGLG00000003581) ENSHGLG00000012986 ENSHGLG00000013614 #9 MED4 (ENSHGLG00000013271) #11 NUDT15 (ENSHGLG00000037073) #12 ENSHGLG00000006869 #13 ENSHGLG00000006924 ENSHGLG00000019880 ##30 ENSHGLG00000044798 HTR2A (ENSHGLG00000041937) #16 ENSHGLG00000002764 #17 LRCH1 (ENSHGLG00000003678) #18 ENSHGLG00000005637 RUBCNL (ENSHGLG00000043639) #20 ENSHGLG00000043742 #21 LCP1 (ENSHGLG00000002813) #22 CPB2 (ENSHGLG00000003312) #23 ZC3H13 (ENSHGLG00000006309) #24 SIAH3 (ENSHGLG00000008529) #25 CBY2 (ENSHGLG00000009737) #26 ENSHGLG00000002801 #28 ENSHGLG00000043699 ENSHGLG00000003289 #29 ENSHGLG00000003878 ENSHGLG00000005278 ##30 ENSHGLG00000007884 #31 KCTD4 (ENSHGLG00000008886) #33 ENSHGLG00000041102 #34 NUFIP1 (ENSHGLG00000046882) #35 TSC22D1 (ENSHGLG00000009007) #36 ENSHGLG00000038690 Hystricomorpha_a ANCESTRAL SPECIES 21 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864.y #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.a.a.p ##30 ENSGT00940000159552 #33 ENSGT00390000016051 #31 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT01060000249039 ENSGT00390000000693 ENSGT00390000005130 Guinea pig MODERN SPECIES 6 CDADC1 (ENSCPOG00000003715) FNDC3A (ENSCPOG00000003704) CYSLTR2 (ENSCPOG00000001597) RCBTB2 (ENSCPOG00000008702) LPAR6 (ENSCPOG00000036002) RB1 (ENSCPOG00000008683) ITM2B (ENSCPOG00000039088) #9 MED4 (ENSCPOG00000039834) #11 ENSCPOG00000015058 #12 ENSCPOG00000038770 #12 SUCLA2 (ENSCPOG00000014961) #13 HTR2A (ENSCPOG00000038918) #16 ESD (ENSCPOG00000011089) #17 LRCH1 (ENSCPOG00000011077) #18 RUBCNL (ENSCPOG00000008458) #20 LCP1 (ENSCPOG00000001937) #22 CPB2 (ENSCPOG00000000649) #23 ZC3H13 (ENSCPOG00000000646) #24 SIAH3 (ENSCPOG00000033748) #25 CBY2 (ENSCPOG00000036575) #26 COG3 (ENSCPOG00000009924) #28 SLC25A30 (ENSCPOG00000031582) #29 ENSCPOG00000009278 ##30 KCTD4 (ENSCPOG00000009346) #33 GTF2F2 (ENSCPOG00000009342) #31 ENSCPOG00000026022 #34 NUFIP1 (ENSCPOG00000005828) #35 TSC22D1 (ENSCPOG00000000560) #36 ENSCPOG00000031530 LACC1 (ENSCPOG00000011253) CCDC122 (ENSCPOG00000003514) Hystricomorpha_b ANCESTRAL SPECIES 44 ENSGT00940000156894 ENSGT00940000155454 ENSGT00940000155219 ENSGT00480000042679.b.b ENSGT00390000013700 ENSGT00940000157039.b ENSGT00390000013956 ENSGT00940000155175.A ENSGT00940000156877 ENSGT00950000183174.B.b ENSGT00390000011709 ENSGT00390000006601 ENSGT00940000158106 ENSGT00940000153313.B ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.b.f.a ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT01060000249039 ENSGT00390000000693 ENSGT00390000005130 Long-tailed chinchilla MODERN SPECIES 225 KBTBD7 (ENSCLAG00000017423) MTRF1 (ENSCLAG00000000582) NAA16 (ENSCLAG00000000566) RGCC (ENSCLAG00000000799) VWA8 (ENSCLAG00000001287) DGKH (ENSCLAG00000000480) AKAP11 (ENSCLAG00000000420) LRRC63 (ENSCLAG00000000306) #21 LCP1 (ENSCLAG00000000191) #22 ENSCLAG00000000122 ENSCLAG00000000776 CPB2 (ENSCLAG00000000655) #23 ZC3H13 (ENSCLAG00000000610) #24 SIAH3 (ENSCLAG00000000493) #25 CBY2 (ENSCLAG00000000430) #26 COG3 (ENSCLAG00000000745) #28 SLC25A30 (ENSCLAG00000000339) #29 KCTD4 (ENSCLAG00000000309) #33 ENSCLAG00000000205 #31 ENSCLAG00000000164 #34 NUFIP1 (ENSCLAG00000000114) #35 TSC22D1 (ENSCLAG00000001734) #36 ENSCLAG00000001695 LACC1 (ENSCLAG00000001645) Degu DUPLICATION Degu MODERN SPECIES 163 ELF1 (ENSODEG00000005272) ENSODEG00000005378 WBP4 (ENSODEG00000005811) ENSODEG00000004948 KBTBD7 (ENSODEG00000019293) MTRF1 (ENSODEG00000005782) ENSODEG00000006513 RGCC (ENSODEG00000005723) VWA8 (ENSODEG00000006290) ENSODEG00000005696 ENSODEG00000019364 ENSODEG00000019318 ENSODEG00000006776 DGKH (ENSODEG00000006365) AKAP11 (ENSODEG00000006558) ENSODEG00000007562 #22 CPB2 (ENSODEG00000005426) #23 ZC3H13 (ENSODEG00000005178) #24 SIAH3 (ENSODEG00000006861) #25 CBY2 (ENSODEG00000007190) #26 COG3 (ENSODEG00000006373) #28 SLC25A30 (ENSODEG00000005522) #29 ENSODEG00000005658 ##30 GTF2F2 (ENSODEG00000006595) #31 KCTD4 (ENSODEG00000019362) #33 ENSODEG00000006647 ENSODEG00000005907 #34 ENSODEG00000006393 NUFIP1 (ENSODEG00000006473) #35 ENSODEG00000005705 ENSODEG00000006384 Degu MODERN SPECIES 188 STXBP5L (ENSODEG00000007458) POLQ (ENSODEG00000007851) FBXO40 (ENSODEG00000008932) ENSODEG00000008646 #22 HCLS1 (ENSODEG00000009049) GOLGB1 (ENSODEG00000007972) IQCB1 (ENSODEG00000007907) EAF2 (ENSODEG00000007603) SLC15A2 (ENSODEG00000010727) ILDR1 (ENSODEG00000007516) ENSODEG00000019503 CASR (ENSODEG00000009812) CSTA (ENSODEG00000007909) ENSODEG00000008197 FAM162A (ENSODEG00000008867) WDR5B (ENSODEG00000019471) ENSODEG00000019490 KPNA1 (ENSODEG00000008059) PARP9 (ENSODEG00000010249) Sciuridae ANCESTRAL SPECIES 34 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT01040000240444.A.a.a.a.a ENSGT00950000183202.b ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.a.a ##30 ENSGT00390000006051.b.f ##30 ENSGT00390000016051.u.b #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000162467.b #37 ENSGT00390000000693 Marmotini ANCESTRAL SPECIES 29 ENSGT01100000263484.C.a ENSGT00940000159319 ENSGT01100000263536.B.c.a ENSGT00940000158925 ENSGT00950000183202.b ENSGT01040000240444.A.a.a.a.a ENSGT00950000183115.b.a #9 ENSGT00390000012063 #11 ENSGT00390000003338 #12 ENSGT00390000010170.a.b #13 ENSGT01050000244937.a.a #16 ENSGT00390000011864 #17 ENSGT00940000159528 #18 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.a.a ##30 ENSGT00390000006051.b.f ##30 ENSGT00390000016051.u.b #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT00940000163647 ENSGT00940000162467.b #37 Marmotini_b ANCESTRAL SPECIES 219 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.b.f ##30 ENSGT00390000016051.u.b #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000159144.B #36 ENSGT01060000249039 Arctic ground squirrel MODERN SPECIES 822 LCP1 (ENSUPAG00010010673) #22 CPB2 (ENSUPAG00010010691) #23 ZC3H13 (ENSUPAG00010010699) #24 Squirrel MODERN SPECIES 456 LCP1 (ENSSTOG00000011735) #22 CPB2 (ENSSTOG00000010700) #23 ZC3H13 (ENSSTOG00000029682) #24 SIAH3 (ENSSTOG00000021529) #25 CBY2 (ENSSTOG00000003207) #26 COG3 (ENSSTOG00000003137) #28 SLC25A30 (ENSSTOG00000003168) #29 Alpin marmot MODERN SPECIES 13 ENSMMMG00000023108 FNDC3A (ENSMMMG00000023109) CYSLTR2 (ENSMMMG00000023126) RCBTB2 (ENSMMMG00000023136) RB1 (ENSMMMG00000023141) LPAR6 (ENSMMMG00000023147) ITM2B (ENSMMMG00000023154) #9 MED4 (ENSMMMG00000023156) #11 NUDT15 (ENSMMMG00000023158) #12 SUCLA2 (ENSMMMG00000023163) #13 HTR2A (ENSMMMG00000023175) #16 ESD (ENSMMMG00000023189) #17 LRCH1 (ENSMMMG00000023214) #18 RUBCNL (ENSMMMG00000023314) #20 LRRC63 (ENSMMMG00000023317) #21 LCP1 (ENSMMMG00000023327) #22 CPB2 (ENSMMMG00000023337) #23 ZC3H13 (ENSMMMG00000023343) #24 SIAH3 (ENSMMMG00000023403) #25 CBY2 (ENSMMMG00000023405) #26 COG3 (ENSMMMG00000023415) #28 SLC25A30 (ENSMMMG00000023425) #29 ENSMMMG00000023427 ##30 ENSMMMG00000023432 #31 KCTD4 (ENSMMMG00000023434) #33 ENSMMMG00000023435 ENSMMMG00000023437 #34 NUFIP1 (ENSMMMG00000023439) #35 TSC22D1 (ENSMMMG00000023448) #36 LACC1 (ENSMMMG00000023463) CCDC122 (ENSMMMG00000023465) Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005002047 ITM2B (ENSSVLG00005002020) #9 MED4 (ENSSVLG00005001989) #11 ENSSVLG00005001974 #12 SUCLA2 (ENSSVLG00005001944) #13 ENSSVLG00005001859 #16 ENSSVLG00005001827 #17 LRCH1 (ENSSVLG00005001766) #18 RUBCNL (ENSSVLG00005001693) #20 ENSSVLG00005001657 #16 ENSSVLG00005001636 ENSSVLG00005001618 ENSSVLG00005001599 ENSSVLG00005001588 LRRC63 (ENSSVLG00005001547) #21 LCP1 (ENSSVLG00005001488) #22 CPB2 (ENSSVLG00005001440) #23 ZC3H13 (ENSSVLG00005001347) #24 SIAH3 (ENSSVLG00005001312) #25 CBY2 (ENSSVLG00005001296) #26 ENSSVLG00005001222 #28 SLC25A30 (ENSSVLG00005001187) #29 ENSSVLG00005001160 ENSSVLG00005001144 ENSSVLG00005001090 ##30 KCTD4 (ENSSVLG00005001062) #33 ENSSVLG00005001046 #31 ENSSVLG00005001028 ENSSVLG00005001012 ENSSVLG00005000987 #34 NUFIP1 (ENSSVLG00005000955) #35 Lagomorpha ANCESTRAL SPECIES 56 ENSGT00940000160585 #20 ENSGT00710000106860 #21 ENSGT00950000183097.a.a.b #22 ENSGT00940000159160 #23 ENSGT00730000111163 #24 ENSGT00940000161772 #25 ENSGT00940000153137.a.b.b.a #26 ENSGT00940000153655.A.a ENSGT00390000015682 #28 ENSGT00940000158961 #29 ENSGT00390000006051.a.b.a.b ##30 ENSGT00390000016051 #31 ENSGT00940000159552 #33 ENSGT00390000012569.b #34 ENSGT00390000003758 #35 ENSGT00940000163647 ENSGT00940000162467.b #37 ENSGT00390000014262 Rabbit MODERN SPECIES 19 GJB6 (ENSOCUG00000026851) ENSOCUG00000035218 GJB2 (ENSOCUG00000010156) GJA3 (ENSOCUG00000003931) ZMYM2 (ENSOCUG00000017086) ZMYM5 (ENSOCUG00000013877) PSPC1 (ENSOCUG00000006153) MPHOSPH8 (ENSOCUG00000000429) PARP4 (ENSOCUG00000014529) CENPJ (ENSOCUG00000007405) RNF17 (ENSOCUG00000007384) ATP12A (ENSOCUG00000007374) ENSOCUG00000017323 RUBCNL (ENSOCUG00000009941) #20 LRRC63 (ENSOCUG00000014059) #21 LCP1 (ENSOCUG00000017943) #22 CPB2 (ENSOCUG00000017940) #23 ENSOCUG00000031267 ZC3H13 (ENSOCUG00000015173) #24 ENSOCUG00000024639 SIAH3 (ENSOCUG00000029756) #25 CBY2 (ENSOCUG00000014037) #26 ENSOCUG00000002490 COG3 (ENSOCUG00000002476) #28 SLC25A30 (ENSOCUG00000008419) #29 ENSOCUG00000023692 ##30 GTF2F2 (ENSOCUG00000003537) #31 KCTD4 (ENSOCUG00000013829) #33 ENSOCUG00000007277 #34 NUFIP1 (ENSOCUG00000007273) #35 ENSOCUG00000027968 Pika MODERN SPECIES 4456 LCP1 (ENSOPRG00000000423) #22 CPB2 (ENSOPRG00000000418) #23