Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT00940000166730	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00390000018873	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b
Glires	ANCESTRAL SPECIES	10	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00390000018873	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00390000018873	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.a	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197.t	ENSGT00940000155075.a.b.`b
Marmotini	ANCESTRAL SPECIES	69	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22
Alpin marmot	MODERN SPECIES	49	DCX (ENSMMMG00000010313) #7	ENSMMMG00000010294 #8	SERTM2 (ENSMMMG00000010287) #9	ENSMMMG00000010283 #10	ENSMMMG00000010265 #11	ENSMMMG00000010246 #12	ENSMMMG00000010237 #13	TRPC5OS (ENSMMMG00000010228) #14	ENSMMMG00000010219 #15	RTL4 (ENSMMMG00000010207) #16	LHFPL1 (ENSMMMG00000010200) #17	AMOT (ENSMMMG00000010173) #18	HTR2C (ENSMMMG00000010115) #19	IL13RA2 (ENSMMMG00000010086) #20	LRCH2 (ENSMMMG00000010053) #21	PLS3 (ENSMMMG00000009838) #22	ENSMMMG00000009830 #23
Marmotini_b	ANCESTRAL SPECIES	93	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22
Arctic ground squirrel	MODERN SPECIES	475												HTR2C (ENSUPAG00010007041) #19	ENSUPAG00010007064	IL13RA2 (ENSUPAG00010007072) #20	LRCH2 (ENSUPAG00010007190) #21	PLS3 (ENSUPAG00010007229) #22
Squirrel	MODERN SPECIES	99	CHRDL1 (ENSSTOG00000005306)	PAK3 (ENSSTOG00000025028)	CAPN6 (ENSSTOG00000009478)	DCX (ENSSTOG00000023293) #7	ENSSTOG00000022208 ##8	SERTM2 (ENSSTOG00000033966) #9	ALG13 (ENSSTOG00000006799) #12	TRPC5 (ENSSTOG00000001320) #15	LHFPL1 (ENSSTOG00000005325) #17	AMOT (ENSSTOG00000024875) #18	ENSSTOG00000000807	HTR2C (ENSSTOG00000028990) #19	IL13RA2 (ENSSTOG00000016274) #20	LRCH2 (ENSSTOG00000008074) #21	ENSSTOG00000033383	PLS3 (ENSSTOG00000006476) #22
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005013685	LHFPL1 (ENSSVLG00005013627) #17	AMOT (ENSSVLG00005013525) #18	ENSSVLG00005019330	ENSSVLG00005019275	ENSSVLG00005019228	ENSSVLG00005019177	ENSSVLG00005019126	ENSSVLG00005019077	HTR2C (ENSSVLG00005018984) #19	ENSSVLG00005018928	IL13RA2 (ENSSVLG00005018862) #20	LRCH2 (ENSSVLG00005018464) #21	ENSSVLG00005018369	ENSSVLG00005018340	PLS3 (ENSSVLG00005018046) #22	ENSSVLG00005017980	AGTR2 (ENSSVLG00005017968)	ENSSVLG00005017948	ENSSVLG00005017904	SLC6A14 (ENSSVLG00005017746)	CT83 (ENSSVLG00005017691)	ENSSVLG00005017648	KLHL13 (ENSSVLG00005017370)	WDR44 (ENSSVLG00005017220)	DOCK11 (ENSSVLG00005016279)	IL13RA1 (ENSSVLG00005016116)	ENSSVLG00005016098	ENSSVLG00005016082	LONRF3 (ENSSVLG00005015856)	ENSSVLG00005015710
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00390000010397.a	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00940000159922.b #12	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT00390000010165.i.b.b.a	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00390000018873	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000019946	ENSHGLG00000046647	ENSHGLG00000048878	LHFPL1 (ENSHGLG00000013759) #17	ENSHGLG00000012297	ENSHGLG00000013791 #18	ENSHGLG00000035431	ENSHGLG00000035102	ENSHGLG00000001226 #19	ENSHGLG00000041493	ENSHGLG00000001151	ENSHGLG00000001104 #20	LRCH2 (ENSHGLG00000001011) #21	ENSHGLG00000028563	ENSHGLG00000039724	ENSHGLG00000000853 #22	ENSHGLG00000019727	ENSHGLG00000044858	ENSHGLG00000040362	ENSHGLG00000043063	ENSHGLG00000001647	ENSHGLG00000051011	ENSHGLG00000042774	ENSHGLG00000002833	ENSHGLG00000002893	KLHL13 (ENSHGLG00000003690)	ENSHGLG00000046500	ENSHGLG00000003366	ENSHGLG00000033083	DOCK11 (ENSHGLG00000000806)	IL13RA1 (ENSHGLG00000001323)
Hystricomorpha_a	ANCESTRAL SPECIES	65	ENSGT00390000010397.a	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00940000159922.b #12	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT00390000010165.i.b.b.a	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00390000018873	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b
Guinea pig	MODERN SPECIES	46	TMEM164 (ENSCPOG00000040500)	AMMECR1 (ENSCPOG00000039179)	ENSCPOG00000005409	CHRDL1 (ENSCPOG00000006712)	PAK3 (ENSCPOG00000000651)	CAPN6 (ENSCPOG00000000652)	DCX (ENSCPOG00000000654) #7	SERTM2 (ENSCPOG00000032491) #9	ALG13 (ENSCPOG00000011983) #12	TRPC5 (ENSCPOG00000013454) #15	LHFPL1 (ENSCPOG00000001448) #17	AMOT (ENSCPOG00000004754) #18	HTR2C (ENSCPOG00000037536) #19	IL13RA2 (ENSCPOG00000004374) #20	LRCH2 (ENSCPOG00000037426) #21	PLS3 (ENSCPOG00000008293) #22	ENSCPOG00000027061	ENSCPOG00000023623	ENSCPOG00000001828	KLHL13 (ENSCPOG00000011268)	WDR44 (ENSCPOG00000012146)	DOCK11 (ENSCPOG00000005944)	IL13RA1 (ENSCPOG00000011050)	ENSCPOG00000011910	ENSCPOG00000038962	PGRMC1 (ENSCPOG00000012353)	ENSCPOG00000032552	SLC25A43 (ENSCPOG00000032548)	SLC25A5 (ENSCPOG00000009202)	STEEP1 (ENSCPOG00000023467)	ENSCPOG00000011908
Hystricomorpha_b	ANCESTRAL SPECIES	98	ENSGT00390000010397.a	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00940000159922.b #12	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22
Long-tailed chinchilla	MODERN SPECIES	197	RTL9 (ENSCLAG00000003840)	CHRDL1 (ENSCLAG00000003267)	PAK3 (ENSCLAG00000001085)	CAPN6 (ENSCLAG00000000830)	DCX (ENSCLAG00000000751) #7	SERTM2 (ENSCLAG00000017461) #9	ALG13 (ENSCLAG00000002938) #12	ENSCLAG00000002699 #14	TRPC5 (ENSCLAG00000001472) #15	LHFPL1 (ENSCLAG00000001375) #17	AMOT (ENSCLAG00000001284) #18	ENSCLAG00000001156	HTR2C (ENSCLAG00000000849) #19	IL13RA2 (ENSCLAG00000001035) #20	LRCH2 (ENSCLAG00000001130) #21	PLS3 (ENSCLAG00000001460) #22
Degu	MODERN SPECIES	158	LHFPL1 (ENSODEG00000012333) #17	AMOT (ENSODEG00000011962) #18	ENSODEG00000012271	ENSODEG00000011733	ENSODEG00000012804	ENSODEG00000012999	ENSODEG00000012702	ENSODEG00000011755	HTR2C (ENSODEG00000012130) #19	ENSODEG00000011935	IL13RA2 (ENSODEG00000014962) #20	ENSODEG00000013562	LRCH2 (ENSODEG00000011349) #21	ENSODEG00000020187	ENSODEG00000012403	PLS3 (ENSODEG00000011831) #22	ENSODEG00000011300
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b.d	ENSGT00390000002197
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b.d	ENSGT00390000002197
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00910000145143	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b.d.b	ENSGT00390000002197
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00910000145143	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658.`b	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b.d.b	ENSGT00390000002197
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658.`b	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b.d.b	ENSGT00390000002197
Chinese hamster chok1gshd	MODERN SPECIES	16	Dcx (ENSCGRG00001011905) #7	A730046J19Rik (ENSCGRG00001002453) #9	Glt28d2 (ENSCGRG00001017525) #11	Trpc5os (ENSCGRG00001011623) #14	Trpc5 (ENSCGRG00001002419) #15	Rtl4 (ENSCGRG00001001788) #16	Lhfpl1 (ENSCGRG00001022195) #17	Amot (ENSCGRG00001022119) #18	ENSCGRG00001021667	ENSCGRG00001019270	ENSCGRG00001012570	Htr2c (ENSCGRG00001017187) #19	Il13ra2 (ENSCGRG00001001265) #20	Lrch2 (ENSCGRG00001020464) #21	ENSCGRG00001004444	Pls3 (ENSCGRG00001011289) #22	ENSCGRG00001019114	ENSCGRG00001017952	Agtr2 (ENSCGRG00001009526)	ENSCGRG00001015787	Slc6a14 (ENSCGRG00001016499)	ENSCGRG00001010136	ENSCGRG00001015227	Klhl13 (ENSCGRG00001021812)	Wdr44 (ENSCGRG00001022218)	Dock11 (ENSCGRG00001021213)	Il13ra1 (ENSCGRG00001020150)	Zcchc12 (ENSCGRG00001011149)	Lonrf3 (ENSCGRG00001002226)	ENSCGRG00001000825	Pgrmc1 (ENSCGRG00001019069)
Golden Hamster	MODERN SPECIES	876																Pls3 (ENSMAUG00000000484) #22	Agtr2 (ENSMAUG00000000833)	Slc6a14 (ENSMAUG00000000247)
Cricetidae_B	ANCESTRAL SPECIES	51	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT00390000018248 #14	ENSGT01060000248594.e.a #15	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00910000145143	ENSGT00950000183097.a.a.a #22
Northern American deer mouse	MODERN SPECIES	475	A730046J19Rik (ENSPEMG00000013845) #9	Glt28d2 (ENSPEMG00000028682) #11	ENSPEMG00000026719 #12	Trpc5os (ENSPEMG00000024453) #14	Trpc5 (ENSPEMG00000016666) #15	Rtl4 (ENSPEMG00000014794) #16	ENSPEMG00000026774	ENSPEMG00000026868	Lhfpl1 (ENSPEMG00000031060) #17	Amot (ENSPEMG00000009135) #18	ENSPEMG00000029369	ENSPEMG00000027327	ENSPEMG00000029813 #20	Lrch2 (ENSPEMG00000023427) #21	ENSPEMG00000025081	Pls3 (ENSPEMG00000000739) #22	ENSPEMG00000027345	ENSPEMG00000029359	ENSPEMG00000017550	ENSPEMG00000025608	ENSPEMG00000002101	ENSPEMG00000026490	ENSPEMG00000013786	ENSPEMG00000017846	Zbtb33 (ENSPEMG00000023331)	Tmem255a (ENSPEMG00000020511)	Atp1b4 (ENSPEMG00000026754)	Tex13c3 (ENSPEMG00000006117)	ENSPEMG00000030809	Cul4b (ENSPEMG00000008902)	Mcts1 (ENSPEMG00000014914)
Prairie vole	MODERN SPECIES	117															ENSMOCG00000000044	Pls3 (ENSMOCG00000000114) #22	ENSMOCG00000000168	Lrch2 (ENSMOCG00000000896) #21	Il13ra2 (ENSMOCG00000001933) #20	Htr2c (ENSMOCG00000002901) #19	ENSMOCG00000003749	Amot (ENSMOCG00000007506) #18	Lhfpl1 (ENSMOCG00000011160) #17
Murinae	ANCESTRAL SPECIES	14	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00950000183232 #9	ENSGT00510000047493 #11	ENSGT00940000159922.b #12	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00940000163925 #16	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00910000145143	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00940000159688	ENSGT00860000135780	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00940000170289	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b.d.a.a
Mus	ANCESTRAL SPECIES	9	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000154342.C	ENSGT00720000109445	ENSGT00940000158553.b.a	ENSGT00530000063484.b.b	ENSGT00940000162825	ENSGT00940000159699	ENSGT00940000163515.i	ENSGT00940000158538	ENSGT00940000163515.j	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183097.a.a.a #22	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a	ENSGT00530000063808.a
Mus_A	ANCESTRAL SPECIES	15	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000154342.C	ENSGT00720000109445	ENSGT00940000158553.b.a	ENSGT00530000063484.b.b	ENSGT00940000162825	ENSGT00940000159699	ENSGT00940000163515.i	ENSGT00940000158538	ENSGT00940000163515.j	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183097.a.a.a #22	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j
Mus_B	ANCESTRAL SPECIES	14	ENSGT00720000109445	ENSGT00940000158553.b.a	ENSGT00530000063484.b.b	ENSGT00940000162825	ENSGT00940000159699	ENSGT00940000163515.i	ENSGT00940000158538	ENSGT00940000163515.j	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.b.a.e.a	ENSGT00950000183097.a.a.a #22	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b.o.a	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a
Mus_C	ANCESTRAL SPECIES	27													ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.b.a.e.a	ENSGT00950000183097.a.a.a #22	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a	ENSGT00530000063808.a	ENSGT00530000063435.a.o
spretus	MODERN SPECIES	19	Tmem47 (MGP_SPRETEiJ_G0034376)	MGP_SPRETEiJ_G0034375	Fam47c (MGP_SPRETEiJ_G0034374)	Prrg1 (MGP_SPRETEiJ_G0034373)	4930480E11Rik (MGP_SPRETEiJ_G0034372)	MGP_SPRETEiJ_G0034371	MGP_SPRETEiJ_G0034370	MGP_SPRETEiJ_G0034369	Prkx (MGP_SPRETEiJ_G0034368)	Tbl1x (MGP_SPRETEiJ_G0034367)	Cldn34d (MGP_SPRETEiJ_G0034366)	Cldn34b4 (MGP_SPRETEiJ_G0034365)	MGP_SPRETEiJ_G0034364	MGP_SPRETEiJ_G0034363	MGP_SPRETEiJ_G0034362	Pls3 (MGP_SPRETEiJ_G0034361) #22	Rab39b (MGP_SPRETEiJ_G0034360)	Vbp1 (MGP_SPRETEiJ_G0034359)	Brcc3 (MGP_SPRETEiJ_G0034358)	Mtcp1 (MGP_SPRETEiJ_G0034357)	Cmc4 (MGP_SPRETEiJ_G0034356)	Fundc2 (MGP_SPRETEiJ_G0034355)	F8 (MGP_SPRETEiJ_G0034354)	Smim9 (MGP_SPRETEiJ_G0034353)	Mpp1 (MGP_SPRETEiJ_G0034352)	Dkc1 (MGP_SPRETEiJ_G0034351)	MGP_SPRETEiJ_G0034348	MGP_SPRETEiJ_G0034347	Or13ae2 (MGP_SPRETEiJ_G0034346)	Or7r1 (MGP_SPRETEiJ_G0034345)	MGP_SPRETEiJ_G0034344
Mouse	MODERN SPECIES	37	Fam47c (ENSMUSG00000078315)	Prrg1 (ENSMUSG00000047996)	4930480E11Rik (ENSMUSG00000035651)	Gm14743 (ENSMUSG00000079519)	Obp1b (ENSMUSG00000067679)	Gm5938 (ENSMUSG00000079521)	Obp1a (ENSMUSG00000067684)	5430402E10Rik (ENSMUSG00000044121)	Gm14744 (ENSMUSG00000079522)	Pbsn (ENSMUSG00000000003)	Prkx (ENSMUSG00000035725)	Tbl1x (ENSMUSG00000025246)	Cldn34d (ENSMUSG00000079525)	Cldn34b4 (ENSMUSG00000073085)	Cldn34b3 (ENSMUSG00000071738)	Pls3 (ENSMUSG00000016382) #22	Rab39b (ENSMUSG00000031202)	Vbp1 (ENSMUSG00000031197)	Brcc3 (ENSMUSG00000031201)	Mtcp1 (ENSMUSG00000031200)	Cmc4 (ENSMUSG00000090110)	Fundc2 (ENSMUSG00000031198)	F8 (ENSMUSG00000031196)	Smim9 (ENSMUSG00000073094)	Mpp1 (ENSMUSG00000031402)	Dkc1 (ENSMUSG00000031403)	Gab3 (ENSMUSG00000032750)	Pwwp4d (ENSMUSG00000079531)	Ctag2l2 (ENSMUSG00000079532)	Pwwp4c (ENSMUSG00000079534)	Or13ae2 (ENSMUSG00000051706)
Ryukyu mouse	MODERN SPECIES	19	MGP_CAROLIEiJ_G0033214	Dmd (MGP_CAROLIEiJ_G0033213)	MGP_CAROLIEiJ_G0033212	Tmem47 (MGP_CAROLIEiJ_G0033211)	Mageb16 (MGP_CAROLIEiJ_G0033210)	MGP_CAROLIEiJ_G0033209	Fam47c (MGP_CAROLIEiJ_G0033208)	Prrg1 (MGP_CAROLIEiJ_G0033207)	MGP_CAROLIEiJ_G0033205	MGP_CAROLIEiJ_G0033206	Pbsn (MGP_CAROLIEiJ_G0033204)	Prkx (MGP_CAROLIEiJ_G0033203)	Tbl1x (MGP_CAROLIEiJ_G0033202)	Cldn34d (MGP_CAROLIEiJ_G0033201)	Cldn34b4 (MGP_CAROLIEiJ_G0033200)	Pls3 (MGP_CAROLIEiJ_G0033199) #22	MGP_CAROLIEiJ_G0033198	Mtcp1 (MGP_CAROLIEiJ_G0033197)	Cmc4 (MGP_CAROLIEiJ_G0033196)	Fundc2 (MGP_CAROLIEiJ_G0033195)	F8 (MGP_CAROLIEiJ_G0033194)	Smim9 (MGP_CAROLIEiJ_G0033193)	Mpp1 (MGP_CAROLIEiJ_G0033192)	Dkc1 (MGP_CAROLIEiJ_G0033191)	Or13ae2 (MGP_CAROLIEiJ_G0033190)	Or7r1 (MGP_CAROLIEiJ_G0033189)	G6pdx (MGP_CAROLIEiJ_G0033188)	Ikbkg (MGP_CAROLIEiJ_G0033187)	Fam3a (MGP_CAROLIEiJ_G0033186)	Slc10a3 (MGP_CAROLIEiJ_G0033185)	Ubl4a (MGP_CAROLIEiJ_G0033184)
Shrew mouse	MODERN SPECIES	23	MGP_PahariEiJ_G0031758	Fthl17a (MGP_PahariEiJ_G0031757)	Dmd (MGP_PahariEiJ_G0031756)	4930595M18Rik (MGP_PahariEiJ_G0031755)	Tmem47 (MGP_PahariEiJ_G0031754)	Mageb16 (MGP_PahariEiJ_G0031753)	MGP_PahariEiJ_G0031752	Fam47c (MGP_PahariEiJ_G0031751)	Prrg1 (MGP_PahariEiJ_G0031750)	MGP_PahariEiJ_G0031749	Pbsn (MGP_PahariEiJ_G0031748)	Prkx (MGP_PahariEiJ_G0031747)	Tbl1x (MGP_PahariEiJ_G0031746)	Cldn34d (MGP_PahariEiJ_G0031745)	Cldn34b4 (MGP_PahariEiJ_G0031744)	Pls3 (MGP_PahariEiJ_G0031743) #22	Brcc3 (MGP_PahariEiJ_G0031742)	Mtcp1 (MGP_PahariEiJ_G0031741)	Cmc4 (MGP_PahariEiJ_G0031740)	Fundc2 (MGP_PahariEiJ_G0031739)	F8 (MGP_PahariEiJ_G0031738)	Smim9 (MGP_PahariEiJ_G0031737)	Mpp1 (MGP_PahariEiJ_G0031736)	Dkc1 (MGP_PahariEiJ_G0031735)	Gab3 (MGP_PahariEiJ_G0031734)	Or13ae2 (MGP_PahariEiJ_G0031733)	Or7r1 (MGP_PahariEiJ_G0031732)	G6pdx (MGP_PahariEiJ_G0031731)	Ikbkg (MGP_PahariEiJ_G0031730)	Fam3a (MGP_PahariEiJ_G0031729)	Slc10a3 (MGP_PahariEiJ_G0031728)
Rat	MODERN SPECIES	46	LOC100361854 (ENSRNOG00000029512)	Alg13 (ENSRNOG00000065758) #11	LOC108349244 (ENSRNOG00000005753) #12	Trpc5 (ENSRNOG00000027233) #15	Trpc5os (ENSRNOG00000064383) #14	Rtl4 (ENSRNOG00000031638) #16	Lhfpl1 (ENSRNOG00000027601) #17	Amot (ENSRNOG00000007345) #18	ENSRNOG00000065631	ENSRNOG00000065464	Htr2c (ENSRNOG00000030877)	Il13ra2 (ENSRNOG00000032973) #20	Lrch2 (ENSRNOG00000029582) #21	Luzp4 (ENSRNOG00000069107)	AABR07041089.1 (ENSRNOG00000018923)	Pls3 (ENSRNOG00000027520) #22	ENSRNOG00000067242	AABR07041109.1 (ENSRNOG00000050465)	Agtr2 (ENSRNOG00000050006)	Slc6a14 (ENSRNOG00000005687)	ENSRNOG00000068085	Ppp1r2-ps2 (ENSRNOG00000064591)	AABR07041140.1 (ENSRNOG00000006459)	Sec61g-ps4 (ENSRNOG00000061620)	Klhl13 (ENSRNOG00000014029)	Wdr44 (ENSRNOG00000029068)	ENSRNOG00000063057	Tesl (ENSRNOG00000033628)	RGD1566184 (ENSRNOG00000057692)	ENSRNOG00000067513	RGD1566387 (ENSRNOG00000013698)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1153								Trpc5 (ENSNGAG00000022168) #15	Lhfpl1 (ENSNGAG00000021281) #17	Amot (ENSNGAG00000009864) #18	ENSNGAG00000010177	Htr2c (ENSNGAG00000008803) #19	Il13ra2 (ENSNGAG00000003091) #20	Lrch2 (ENSNGAG00000017781) #21	ENSNGAG00000021201	Pls3 (ENSNGAG00000023498) #22
Lesser Egyptian jerboa	MODERN SPECIES	69	Capn6 (ENSJJAG00000014765)	Dcx (ENSJJAG00000015630) #7	A730046J19Rik (ENSJJAG00000010844) #9	Glt28d2 (ENSJJAG00000013741) #11	Trpc5 (ENSJJAG00000024433) #15	Lhfpl1 (ENSJJAG00000015318) #17	ENSJJAG00000012278 #18	ENSJJAG00000018212	ENSJJAG00000017574	ENSJJAG00000020933	Htr2c (ENSJJAG00000024036) #19	ENSJJAG00000023972	ENSJJAG00000011564	Il13ra2 (ENSJJAG00000022912) #20	Lrch2 (ENSJJAG00000009205) #21	Pls3 (ENSJJAG00000022405) #22	Agtr2 (ENSJJAG00000011582)	Vps45 (ENSJJAG00000019652)	Otud7b (ENSJJAG00000023034)	Mtmr11 (ENSJJAG00000013193)	Sf3b4 (ENSJJAG00000022500)	Sv2a (ENSJJAG00000019928)	Bola1 (ENSJJAG00000018323)	ENSJJAG00000014139	ENSJJAG00000020529	Hjv (ENSJJAG00000012429)	Txnip (ENSJJAG00000013701)	ENSJJAG00000019638	Ankrd34a (ENSJJAG00000011251)	Lix1l (ENSJJAG00000017071)	ENSJJAG00000009488
Kangaroo rat	MODERN SPECIES	546														Htr2c (ENSDORG00000015746) #19	Lrch2 (ENSDORG00000016618) #21	Pls3 (ENSDORG00000004498) #22
Lagomorpha	ANCESTRAL SPECIES	53	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570 #7	ENSGT00940000166730	ENSGT01060000248594.e.a #15	ENSGT00390000018248 #14	ENSGT00990000203589.a.b.a.b #17	ENSGT00940000159055 #18	ENSGT01050000244937.a.b.a #19	ENSGT00940000159971 #20	ENSGT00940000160039 #21	ENSGT00950000183097.a.a.a #22	ENSGT01050000244888.b.a.c.a	ENSGT00390000018873	ENSGT00940000154359.f	ENSGT00940000157557	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b	ENSGT00440000033329.b.a.b	ENSGT00390000002253	ENSGT00940000164744	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197
Rabbit	MODERN SPECIES	1401	ENSOCUG00000036610 #14	ENSOCUG00000024931	RTL4 (ENSOCUG00000005364) #16	ENSOCUG00000027921	LHFPL1 (ENSOCUG00000013710) #17	AMOT (ENSOCUG00000004881) #18	ENSOCUG00000036470	ENSOCUG00000013331	ENSOCUG00000031433	ENSOCUG00000021705	ENSOCUG00000032360	HTR2C (ENSOCUG00000015900) #19	IL13RA2 (ENSOCUG00000014747) #20	LRCH2 (ENSOCUG00000016267) #21	ENSOCUG00000026035	PLS3 (ENSOCUG00000006041) #22	ENSOCUG00000021665	AGTR2 (ENSOCUG00000012363)	SLC6A14 (ENSOCUG00000015028)	ENSOCUG00000036103	KLHL13 (ENSOCUG00000001993)	WDR44 (ENSOCUG00000013619)	DOCK11 (ENSOCUG00000013642)	IL13RA1 (ENSOCUG00000013687)	ENSOCUG00000016135	ENSOCUG00000030538	LONRF3 (ENSOCUG00000012990)	ENSOCUG00000021455	ENSOCUG00000015860	PGRMC1 (ENSOCUG00000010280)	ENSOCUG00000022039
Pika	MODERN SPECIES	5353																ENSOPRG00000010439 #22
Tree shrew	MODERN SPECIES	6062																PLS3 (ENSTBEG00000010720) #22