Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00390000006516	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36	ENSGT00730000112003 #37
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36	ENSGT00730000112003 #37
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36	ENSGT00730000112003 #37
Muroidea	ANCESTRAL SPECIES	15	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36	ENSGT00730000112003 #37
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000162934	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000162934	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36
Northern American deer mouse	MODERN SPECIES	13	Zbtb12 (ENSPEMG00000028249) #7	Ehmt2 (ENSPEMG00000011404) #8	Slc44a4 (ENSPEMG00000011491) #9	Neu1 (ENSPEMG00000009374) #10	ENSPEMG00000027556 #11	ENSPEMG00000028093 #12	Hspa1l (ENSPEMG00000010938) #13	Lsm2 (ENSPEMG00000026796) #14	Vars (ENSPEMG00000006639) #15	Vwa7 (ENSPEMG00000004592) #16	Sapcd1 (ENSPEMG00000030346) #17	Msh5 (ENSPEMG00000015565) #18	Clic1 (ENSPEMG00000016556) #19	Ddah2 (ENSPEMG00000009545) #20	Mpig6b (ENSPEMG00000009149) #21	Ly6g6c (ENSPEMG00000012722) #22	Ly6g6d (ENSPEMG00000006406) #23	Ly6g6e (ENSPEMG00000018140) #24	Ly6g6f (ENSPEMG00000007568) #25	Abhd16a (ENSPEMG00000012607) #26	ENSPEMG00000004879 #27	Csnk2b (ENSPEMG00000013471) #28	Gpank1 (ENSPEMG00000014457) #29	D17H6S53E (ENSPEMG00000004143) #30	Apom (ENSPEMG00000013312) #31	ENSPEMG00000026029 #32	Bag6 (ENSPEMG00000014975) #33	Prrc2a (ENSPEMG00000018780) #34	Aif1 (ENSPEMG00000031023) #35	ENSPEMG00000030659 #36	ENSPEMG00000015715 #37
Prairie vole	MODERN SPECIES	170	Cfb (ENSMOCG00000001320)	Zbtb12 (ENSMOCG00000002711) #7	Ehmt2 (ENSMOCG00000015390) #8	Slc44a4 (ENSMOCG00000016917) #9	Neu1 (ENSMOCG00000012259) #10	ENSMOCG00000005617 #11	Hspa1l (ENSMOCG00000003223) #13	Lsm2 (ENSMOCG00000015306) #14	Vars (ENSMOCG00000015404) #15	Vwa7 (ENSMOCG00000010617) #16	Sapcd1 (ENSMOCG00000000928) #17	Msh5 (ENSMOCG00000022918) #18	Clic1 (ENSMOCG00000017714) #19	Ddah2 (ENSMOCG00000011844) #20	Mpig6b (ENSMOCG00000022391) #21	Ly6g6c (ENSMOCG00000016036) #22	Ly6g6d (ENSMOCG00000006983) #23	Ly6g6e (ENSMOCG00000004129) #24	Ly6g6f (ENSMOCG00000000339) #25	Abhd16a (ENSMOCG00000011271) #26	ENSMOCG00000000609	Csnk2b (ENSMOCG00000014968) #28	Gpank1 (ENSMOCG00000000141) #29	D17H6S53E (ENSMOCG00000003583) #30	Apom (ENSMOCG00000008808) #31	Bag6 (ENSMOCG00000019694) #33	Prrc2a (ENSMOCG00000000351) #34	Aif1 (ENSMOCG00000014520) #35	ENSMOCG00000017534	Ltb (ENSMOCG00000016107)	Tnf (ENSMOCG00000012484)
Cricetinae	ANCESTRAL SPECIES	43	ENSGT00940000158605.fb	ENSGT00940000162934	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37	ENSGT01060000248544.a.a.a.b	ENSGT01060000248544.a.b.a	ENSGT01060000248544.a.b.b
Chinese hamster chok1gshd	MODERN SPECIES	303	C2 (ENSCGRG00001005331)	ENSCGRG00001001109 #11	Zbtb12 (ENSCGRG00001002052) #7	Ehmt2 (ENSCGRG00001022736) #8	Slc44a4 (ENSCGRG00001020159) #9	Neu1 (ENSCGRG00001010017) #10	Hspa1l (ENSCGRG00001000703) #13	Lsm2 (ENSCGRG00001013932) #14	Vars (ENSCGRG00001005686) #15	Vwa7 (ENSCGRG00001024017) #16	Sapcd1 (ENSCGRG00001001962) #17	Msh5 (ENSCGRG00001022358) #18	ENSCGRG00001005949 #19	Ddah2 (ENSCGRG00001013784) #20	Mpig6b (ENSCGRG00001000218) #21	Ly6g6c (ENSCGRG00001019394) #22	Ly6g6d (ENSCGRG00001009978) #23	Ly6g6e (ENSCGRG00001017928) #24	Ly6g6f (ENSCGRG00001009267) #25	Abhd16a (ENSCGRG00001012878) #26	Csnk2b (ENSCGRG00001003014) #28	Gpank1 (ENSCGRG00001007828) #29	D17H6S53E (ENSCGRG00001003611) #30	Apom (ENSCGRG00001015233) #31	Bag6 (ENSCGRG00001002403) #33	Prrc2a (ENSCGRG00001013780) #34	Aif1 (ENSCGRG00001022466) #35	ENSCGRG00001017919	Ltb (ENSCGRG00001019732)	Tnf (ENSCGRG00001022485)	Lta (ENSCGRG00001000368)
Golden Hamster	MODERN SPECIES	856	Cfb (ENSMAUG00000005083)	Zbtb12 (ENSMAUG00000008051) #7	Ehmt2 (ENSMAUG00000021721) #8	Slc44a4 (ENSMAUG00000016147) #9	Neu1 (ENSMAUG00000006425) #10	ENSMAUG00000007504	Hspa1l (ENSMAUG00000015361) #13	Lsm2 (ENSMAUG00000021966) #14	Vars (ENSMAUG00000006715) #15	Vwa7 (ENSMAUG00000012692) #16	Sapcd1 (ENSMAUG00000012648) #17	Msh5 (ENSMAUG00000016112) #18	Clic1 (ENSMAUG00000021659) #19	Ddah2 (ENSMAUG00000000563) #20	Mpig6b (ENSMAUG00000000529) #21	Ly6g6c (ENSMAUG00000014579) #22	Ly6g6d (ENSMAUG00000009349) #23	Ly6g6f (ENSMAUG00000020056) #25	Abhd16a (ENSMAUG00000012397) #26	Csnk2b (ENSMAUG00000021192) #28	Gpank1 (ENSMAUG00000014293) #29	D17H6S53E (ENSMAUG00000007562) #30	Apom (ENSMAUG00000018767) #31	Bag6 (ENSMAUG00000013749) #33	Prrc2a (ENSMAUG00000012096) #34	Aif1 (ENSMAUG00000001604) #35	Lst1 (ENSMAUG00000000505) #37	Ltb (ENSMAUG00000007672)	Tnf (ENSMAUG00000014299)	Lta (ENSMAUG00000007902)	Nfkbil1 (ENSMAUG00000018035)
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36
Mus	ANCESTRAL SPECIES	16	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37
Mouse	MODERN SPECIES	8	Zbtb12 (ENSMUSG00000049823) #7	Ehmt2 (ENSMUSG00000013787) #8	Slc44a4 (ENSMUSG00000007034) #9	Neu1 (ENSMUSG00000007038) #10	Hspa1b (ENSMUSG00000090877) #11	Hspa1a (ENSMUSG00000091971) #11	Hspa1l (ENSMUSG00000007033) #13	Lsm2 (ENSMUSG00000007050) #14	Vars (ENSMUSG00000007029) #15	Vwa7 (ENSMUSG00000007030) #16	Sapcd1 (ENSMUSG00000036185) #17	Msh5 (ENSMUSG00000007035) #18	Clic1 (ENSMUSG00000007041) #19	Ddah2 (ENSMUSG00000007039) #20	Mpig6b (ENSMUSG00000073414) #21	Ly6g6c (ENSMUSG00000092586) #22	Ly6g6d (ENSMUSG00000073413) #23	Ly6g6e (ENSMUSG00000013766) #24	Ly6g6f (ENSMUSG00000034923) #25	Abhd16a (ENSMUSG00000007036) #26	Ly6g5c (ENSMUSG00000034482) #27	Ly6g5b (ENSMUSG00000043807)	Csnk2b (ENSMUSG00000024387) #28	Gpank1 (ENSMUSG00000092417) #29	D17H6S53E (ENSMUSG00000043311) #30	Apom (ENSMUSG00000024391) #31	Bag6 (ENSMUSG00000024392) #33	Prrc2a (ENSMUSG00000024393) #34	Aif1 (ENSMUSG00000024397) #35	Lst1 (ENSMUSG00000073412) #37	Ltb (ENSMUSG00000024399)
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00960000190197 #32	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37
Steppe mouse	MODERN SPECIES	2394	Slc44a4 (ENSMSIG00000016390) #9	Neu1 (ENSMSIG00000016370) #10	ENSMSIG00000016339	ENSMSIG00000016335	ENSMSIG00000016326 #11	ENSMSIG00000016321	ENSMSIG00000016268 #14	ENSMSIG00000016261	Vars (ENSMSIG00000006467) #15	Vwa7 (ENSMSIG00000006167) #16	Sapcd1 (ENSMSIG00000006135) #17	Msh5 (ENSMSIG00000006018) #18	Clic1 (ENSMSIG00000005986) #19	Ddah2 (ENSMSIG00000005953) #20	ENSMSIG00000005916 #21	Ly6g6c (ENSMSIG00000005875) #22	Ly6g6e (ENSMSIG00000005853) #24	Ly6g6f (ENSMSIG00000005811) #25	Abhd16a (ENSMSIG00000005772) #26	Ly6g5c (ENSMSIG00000005761) #27	ENSMSIG00000005741	ENSMSIG00000005702 #28	Gpank1 (ENSMSIG00000005681) #29	D17H6S53E (ENSMSIG00000005671) #30	Apom (ENSMSIG00000005654) #31	ENSMSIG00000005645 #32	Bag6 (ENSMSIG00000004789) #33	Prrc2a (ENSMSIG00000004576) #34	Aif1 (ENSMSIG00000004527) #35	ENSMSIG00000004498 #37	Ltb (ENSMSIG00000004486)
spretus	MODERN SPECIES	8	Ehmt2 (MGP_SPRETEiJ_G0022388) #8	Slc44a4 (MGP_SPRETEiJ_G0022389) #9	Neu1 (MGP_SPRETEiJ_G0022390) #10	MGP_SPRETEiJ_G0022391 #11	MGP_SPRETEiJ_G0022392 #11	MGP_SPRETEiJ_G0022393	Hspa1l (MGP_SPRETEiJ_G0022394) #13	Lsm2 (MGP_SPRETEiJ_G0022395) #14	Vars (MGP_SPRETEiJ_G0022396) #15	Vwa7 (MGP_SPRETEiJ_G0022397) #16	Sapcd1 (MGP_SPRETEiJ_G0022398) #17	Msh5 (MGP_SPRETEiJ_G0022399) #18	Clic1 (MGP_SPRETEiJ_G0022400) #19	Ddah2 (MGP_SPRETEiJ_G0022401) #20	Mpig6b (MGP_SPRETEiJ_G0022402) #21	Ly6g6c (MGP_SPRETEiJ_G0022403) #22	Ly6g6d (MGP_SPRETEiJ_G0022404) #23	Ly6g6e (MGP_SPRETEiJ_G0022405) #24	Ly6g6f (MGP_SPRETEiJ_G0022406) #25	Abhd16a (MGP_SPRETEiJ_G0022407) #26	Ly6g5c (MGP_SPRETEiJ_G0022408) #27	Ly6g5b (MGP_SPRETEiJ_G0022409)	Csnk2b (MGP_SPRETEiJ_G0022410) #28	Gpank1 (MGP_SPRETEiJ_G0022411) #29	D17H6S53E (MGP_SPRETEiJ_G0022412) #30	Apom (MGP_SPRETEiJ_G0022413) #31	Bag6 (MGP_SPRETEiJ_G0022414) #33	Prrc2a (MGP_SPRETEiJ_G0022415) #34	Aif1 (MGP_SPRETEiJ_G0022416) #35	Lst1 (MGP_SPRETEiJ_G0022417) #37	Ltb (MGP_SPRETEiJ_G0022418)
Ryukyu mouse	MODERN SPECIES	8	Ehmt2 (MGP_CAROLIEiJ_G0021483) #8	Slc44a4 (MGP_CAROLIEiJ_G0021484) #9	Neu1 (MGP_CAROLIEiJ_G0021485) #10	MGP_CAROLIEiJ_G0021486 #11	MGP_CAROLIEiJ_G0021487	MGP_CAROLIEiJ_G0021488 #11	Hspa1l (MGP_CAROLIEiJ_G0021489) #13	Lsm2 (MGP_CAROLIEiJ_G0021490) #14	Vars (MGP_CAROLIEiJ_G0021491) #15	Vwa7 (MGP_CAROLIEiJ_G0021492) #16	Sapcd1 (MGP_CAROLIEiJ_G0021493) #17	Msh5 (MGP_CAROLIEiJ_G0021494) #18	Clic1 (MGP_CAROLIEiJ_G0021495) #19	Ddah2 (MGP_CAROLIEiJ_G0021496) #20	Mpig6b (MGP_CAROLIEiJ_G0021497) #21	Ly6g6c (MGP_CAROLIEiJ_G0021498) #22	Ly6g6d (MGP_CAROLIEiJ_G0021499) #23	Ly6g6e (MGP_CAROLIEiJ_G0021500) #24	Ly6g6f (MGP_CAROLIEiJ_G0021501) #25	Abhd16a (MGP_CAROLIEiJ_G0021502) #26	Ly6g5c (MGP_CAROLIEiJ_G0021503) #27	Ly6g5b (MGP_CAROLIEiJ_G0021504)	Csnk2b (MGP_CAROLIEiJ_G0021505) #28	Gpank1 (MGP_CAROLIEiJ_G0021506) #29	D17H6S53E (MGP_CAROLIEiJ_G0021507) #30	Apom (MGP_CAROLIEiJ_G0021508) #31	Bag6 (MGP_CAROLIEiJ_G0021509) #33	Prrc2a (MGP_CAROLIEiJ_G0021510) #34	Aif1 (MGP_CAROLIEiJ_G0021511) #35	Lst1 (MGP_CAROLIEiJ_G0021512) #37	Ltb (MGP_CAROLIEiJ_G0021513)
Shrew mouse	MODERN SPECIES	9	Ehmt2 (MGP_PahariEiJ_G0020478) #8	Slc44a4 (MGP_PahariEiJ_G0020479) #9	Neu1 (MGP_PahariEiJ_G0020480) #10	MGP_PahariEiJ_G0020481 #11	MGP_PahariEiJ_G0020482 #11	MGP_PahariEiJ_G0020483	Hspa1l (MGP_PahariEiJ_G0020484) #13	Lsm2 (MGP_PahariEiJ_G0020485) #14	Vars (MGP_PahariEiJ_G0020486) #15	Vwa7 (MGP_PahariEiJ_G0020487) #16	Sapcd1 (MGP_PahariEiJ_G0020488) #17	Msh5 (MGP_PahariEiJ_G0020489) #18	Clic1 (MGP_PahariEiJ_G0020490) #19	Ddah2 (MGP_PahariEiJ_G0020491) #20	Mpig6b (MGP_PahariEiJ_G0020492) #21	Ly6g6c (MGP_PahariEiJ_G0020493) #22	Ly6g6d (MGP_PahariEiJ_G0020494) #23	MGP_PahariEiJ_G0020495 #24	Ly6g6f (MGP_PahariEiJ_G0020496) #25	Abhd16a (MGP_PahariEiJ_G0020497) #26	Ly6g5c (MGP_PahariEiJ_G0020498) #27	Ly6g5b (MGP_PahariEiJ_G0020499)	MGP_PahariEiJ_G0020500 #28	Gpank1 (MGP_PahariEiJ_G0020501) #29	D17H6S53E (MGP_PahariEiJ_G0020502) #30	Apom (MGP_PahariEiJ_G0020503) #31	Bag6 (MGP_PahariEiJ_G0020504) #33	MGP_PahariEiJ_G0020505 #34	Aif1 (MGP_PahariEiJ_G0020506) #35	Lst1 (MGP_PahariEiJ_G0020507) #37	Ltb (MGP_PahariEiJ_G0020508)
Rat	MODERN SPECIES	12	Ehmt2 (ENSRNOG00000030630) #8	Slc44a4 (ENSRNOG00000000878) #9	Neu1 (ENSRNOG00000032942) #10	ENSRNOG00000067018	Hspa1b (ENSRNOG00000050647) #11	Hspa1a (ENSRNOG00000045654)	Hspa1l (ENSRNOG00000047966) #13	Lsm2 (ENSRNOG00000048725) #14	Vars1 (ENSRNOG00000000867) #15	Vwa7 (ENSRNOG00000000860) #16	Sapcd1 (ENSRNOG00000000858) #17	Msh5 (ENSRNOG00000000857) #18	Ddah2 (ENSRNOG00000000842) #20	Clic1 (ENSRNOG00000029682) #19	Mpig6b (ENSRNOG00000026936) #21	Ly6g6c (ENSRNOG00000070605) #22	Ly6g6e (ENSRNOG00000027157) #24	Ly6g6d (ENSRNOG00000027225) #25	Abhd16a (ENSRNOG00000056637) #26	Ly6g5c (ENSRNOG00000000846) #27	Ly6g5b (ENSRNOG00000027516)	Csnk2b (ENSRNOG00000000847) #28	Gpank1 (ENSRNOG00000000848) #29	G4 (ENSRNOG00000039658) #30	Apom (ENSRNOG00000000850) #31	Bag6 (ENSRNOG00000000851) #33	Prrc2a (ENSRNOG00000000852) #34	Aif1 (ENSRNOG00000000853) #35	Ncr3 (ENSRNOG00000000854) #36	Lst1 (ENSRNOG00000000855) #37	Ltb (ENSRNOG00000070531)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1767	Nelfe (ENSNGAG00000016248)	Cfb (ENSNGAG00000009653)	Zbtb12 (ENSNGAG00000011842) #7	Ehmt2 (ENSNGAG00000023439) #8	Slc44a4 (ENSNGAG00000021975) #9	Neu1 (ENSNGAG00000016139) #10	Hspa1l (ENSNGAG00000000836) #13	Lsm2 (ENSNGAG00000003997) #14	Vars (ENSNGAG00000012151) #15	Vwa7 (ENSNGAG00000005246) #16	Sapcd1 (ENSNGAG00000022475) #17	Msh5 (ENSNGAG00000018979) #18	Clic1 (ENSNGAG00000023302) #19	Ddah2 (ENSNGAG00000002913) #20	Mpig6b (ENSNGAG00000021859) #21	Ly6g6c (ENSNGAG00000023350) #22	Ly6g6d (ENSNGAG00000022523) #23	Ly6g6e (ENSNGAG00000001035) #24	Ly6g6f (ENSNGAG00000004827) #25	Abhd16a (ENSNGAG00000016298) #26	Ly6g5c (ENSNGAG00000018931) #27	Ly6g5b (ENSNGAG00000012303)	Csnk2b (ENSNGAG00000021148) #28	D17H6S53E (ENSNGAG00000021539) #30	Apom (ENSNGAG00000021766) #31	Bag6 (ENSNGAG00000001731) #33	Prrc2a (ENSNGAG00000020452) #34	Aif1 (ENSNGAG00000021833) #35	Ltb (ENSNGAG00000018807)	Tnf (ENSNGAG00000016744)	Lta (ENSNGAG00000023386)
Lesser Egyptian jerboa	MODERN SPECIES	220							ENSJJAG00000012778 #11	ENSJJAG00000012405 #11	Hspa1l (ENSJJAG00000018566) #13	ENSJJAG00000019477 ##14	ENSJJAG00000019749 #15	Vwa7 (ENSJJAG00000023036) #16	Msh5 (ENSJJAG00000000116) #18	ENSJJAG00000010196 #19	Ddah2 (ENSJJAG00000011992) #20	Ly6g6c (ENSJJAG00000012162) #22	Abhd16a (ENSJJAG00000012572) #26	ENSJJAG00000013523 #28	Gpank1 (ENSJJAG00000015387) #29	Apom (ENSJJAG00000017668) #31	Bag6 (ENSJJAG00000018884) #33	Prrc2a (ENSJJAG00000022267) #34	Aif1 (ENSJJAG00000005190) #35	ENSJJAG00000000376	ENSJJAG00000002508	Nfkbil1 (ENSJJAG00000003324)	Atp6v1g2 (ENSJJAG00000004269)	Ddx39b (ENSJJAG00000005660)	Pou5f1 (ENSJJAG00000007532)	Tcf19 (ENSJJAG00000009938)	Psors1c2 (ENSJJAG00000010597)
Kangaroo rat	MODERN SPECIES	457									Vars (ENSDORG00000016433) #15	Vwa7 (ENSDORG00000016431) #16	Sapcd1 (ENSDORG00000016430) #17	Msh5 (ENSDORG00000016426) #18	Clic1 (ENSDORG00000016424) #19	Ddah2 (ENSDORG00000016421) #20	Mpig6b (ENSDORG00000016418) #21	Ly6g6c (ENSDORG00000016416) #22	Ly6g6d (ENSDORG00000028191) #23	Ly6g6e (ENSDORG00000014188) #24	Ly6g6f (ENSDORG00000014187) #25	Abhd16a (ENSDORG00000014180) #26	Csnk2b (ENSDORG00000014179) #28	Gpank1 (ENSDORG00000024662) #29	D17H6S53E (ENSDORG00000026993) #30	Apom (ENSDORG00000014177) #31	Bag6 (ENSDORG00000014175) #33	Prrc2a (ENSDORG00000014174) #34	Aif1 (ENSDORG00000023953) #35	Ltb (ENSDORG00000012459)	Tnf (ENSDORG00000012458)	ENSDORG00000029485	Nfkbil1 (ENSDORG00000026238)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00390000006516	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36	ENSGT00730000112003 #37
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215.s #11	ENSGT00390000006516	ENSGT00940000161215.t #11	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b.f #35	ENSGT00390000013846.a.b.e #35	ENSGT00390000006603 #36
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00940000162934	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215.s #11	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b.f #35	ENSGT00730000112003 #37	ENSGT01060000248544.a.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000162934	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215.s #11	ENSGT00940000162096 #13	ENSGT00390000016597.j #14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b.f #35	ENSGT00730000112003 #37	ENSGT01060000248544.a.a.a.b
Long-tailed chinchilla	MODERN SPECIES	144	C2 (ENSCLAG00000007167)	ZBTB12 (ENSCLAG00000007108) #7	EHMT2 (ENSCLAG00000009673) #8	SLC44A4 (ENSCLAG00000006728) #9	NEU1 (ENSCLAG00000008497) #10	ENSCLAG00000018000 #11	HSPA1L (ENSCLAG00000007254) #13	LSM2 (ENSCLAG00000008081) #14	VARS1 (ENSCLAG00000009470) #15	VWA7 (ENSCLAG00000007284) #16	SAPCD1 (ENSCLAG00000006758) #17	MSH5 (ENSCLAG00000011345) #18	CLIC1 (ENSCLAG00000008227) #19	MPIG6B (ENSCLAG00000007245) #21	DDAH2 (ENSCLAG00000006559) #20	LY6G6C (ENSCLAG00000009864) #22	ENSCLAG00000009432 #23	ENSCLAG00000008055 #24	ENSCLAG00000011200 #25	ABHD16A (ENSCLAG00000011581) #26	LY6G5C (ENSCLAG00000012352) #27	LY6G5B (ENSCLAG00000013439)	CSNK2B (ENSCLAG00000012176) #28	GPANK1 (ENSCLAG00000014639) #29	C6orf47 (ENSCLAG00000017973) #30	APOM (ENSCLAG00000012748) #31	BAG6 (ENSCLAG00000010375) #33	PRRC2A (ENSCLAG00000013402) #34	ENSCLAG00000011440 #35	TNF (ENSCLAG00000014712)	LTA (ENSCLAG00000010967)
Degu	MODERN SPECIES	46	ZBTB12 (ENSODEG00000017709) #7	EHMT2 (ENSODEG00000017547) #8	SLC44A4 (ENSODEG00000017567) #9	NEU1 (ENSODEG00000017719) #10	ENSODEG00000020560 #11	ENSODEG00000020564 #11	HSPA1L (ENSODEG00000020501) #13	LSM2 (ENSODEG00000017583) #14	VARS1 (ENSODEG00000017681) #15	ENSODEG00000017700 #16	SAPCD1 (ENSODEG00000017689) #17	MSH5 (ENSODEG00000017644) #18	ENSODEG00000017682 #19	DDAH2 (ENSODEG00000017617) #20	MPIG6B (ENSODEG00000017842) #21	LY6G6C (ENSODEG00000017694) #22	LY6G6D (ENSODEG00000017755) #23	ENSODEG00000017710 #24	ENSODEG00000017678 #25	ABHD16A (ENSODEG00000018038) #26	LY6G5C (ENSODEG00000017654) #27	LY6G5B (ENSODEG00000017707)	CSNK2B (ENSODEG00000017772) #28	GPANK1 (ENSODEG00000017947) #29	APOM (ENSODEG00000017879) #31	BAG6 (ENSODEG00000017877) #33	PRRC2A (ENSODEG00000017825) #34	AIF1 (ENSODEG00000017839) #35	ENSODEG00000017817	LST1 (ENSODEG00000017867) #37	LTB (ENSODEG00000017677)
Guinea pig	MODERN SPECIES	15	C2 (ENSCPOG00000021284)	EHMT2 (ENSCPOG00000014788) #8	SLC44A4 (ENSCPOG00000014782) #9	NEU1 (ENSCPOG00000014780) #10	ENSCPOG00000000974 #11	ENSCPOG00000035597 #11	HSPA1L (ENSCPOG00000035528) #13	LSM2 (ENSCPOG00000021053) #14	VARS1 (ENSCPOG00000000870) #15	VWA7 (ENSCPOG00000000869) #16	SAPCD1 (ENSCPOG00000024345) #17	MSH5 (ENSCPOG00000000868) #18	CLIC1 (ENSCPOG00000025841) #19	DDAH2 (ENSCPOG00000001824) #20	MPIG6B (ENSCPOG00000021071) #21	LY6G6C (ENSCPOG00000023366) #22	LY6G6D (ENSCPOG00000040085) #23	ENSCPOG00000039034 #24	ENSCPOG00000008520 #25	ABHD16A (ENSCPOG00000010799) #26	LY6G5C (ENSCPOG00000010796) #27	LY6G5B (ENSCPOG00000032497)	CSNK2B (ENSCPOG00000010792) #28	GPANK1 (ENSCPOG00000031872) #29	C6orf47 (ENSCPOG00000040592) #30	APOM (ENSCPOG00000010782) #31	BAG6 (ENSCPOG00000002038) #33	PRRC2A (ENSCPOG00000021508) #34	AIF1 (ENSCPOG00000002068) #35	LTB (ENSCPOG00000038868)	TNF (ENSCPOG00000002343)
Naked mole-rat female	MODERN SPECIES	4	NELFE (ENSHGLG00000016601)	ENSHGLG00000042406	EHMT2 (ENSHGLG00000019509) #8	SLC44A4 (ENSHGLG00000018523) #9	NEU1 (ENSHGLG00000046499) #10	ENSHGLG00000038683	ENSHGLG00000018564 #11	HSPA1L (ENSHGLG00000034751) #13	LSM2 (ENSHGLG00000011299) #14	VWA7 (ENSHGLG00000012234) #16	ENSHGLG00000012415 #17	MSH5 (ENSHGLG00000012630) #18	CLIC1 (ENSHGLG00000012777) #19	DDAH2 (ENSHGLG00000039122) #20	ENSHGLG00000047674	ENSHGLG00000019251 #22	ENSHGLG00000040317 #23	ENSHGLG00000049061 #24	ENSHGLG00000005200	ENSHGLG00000037307	ENSHGLG00000050323	ENSHGLG00000050137	UBE2D1 (ENSHGLG00000009656)	TFAM (ENSHGLG00000047688)	BICC1 (ENSHGLG00000005632)	ENSHGLG00000032417	FAM13C (ENSHGLG00000002983)	SLC16A9 (ENSHGLG00000008878)	CCDC6 (ENSHGLG00000047353)	ENSHGLG00000049268	ENSHGLG00000005686
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.i.b ##14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00390000006603 #36	ENSGT00730000112003 #37
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.i.b ##14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37	ENSGT01060000248544.a.a.a.b
Marmotini_b	ANCESTRAL SPECIES	82	ENSGT00940000162418 #7	ENSGT00940000159459 #8	ENSGT00940000160576 #9	ENSGT00950000182944.D #10	ENSGT00940000161215 #11	ENSGT00860000136229	ENSGT00940000162096 #13	ENSGT00390000016597.i.b ##14	ENSGT00940000157775 #15	ENSGT00390000011517.a.b #16	ENSGT00500000045192 #17	ENSGT00550000074977 #18	ENSGT00940000154708 #19	ENSGT00940000160769 #20	ENSGT00390000017793 #21	ENSGT00390000000752 #22	ENSGT00390000015960.a.b.b #23	ENSGT00390000007175 #24	ENSGT00390000015960.a.b.a #25	ENSGT00940000160908 #26	ENSGT00390000011513 #27	ENSGT00520000060793	ENSGT00390000003781.e.b #28	ENSGT00390000003292 #29	ENSGT00390000009270 #30	ENSGT00390000001026 #31	ENSGT00390000016199 #33	ENSGT00950000183161.a.a #34	ENSGT00390000013846.a.b #35	ENSGT00730000112003 #37	ENSGT01060000248544.a.a.a.b
Squirrel	MODERN SPECIES	327	ZBTB12 (ENSSTOG00000027411) #7	EHMT2 (ENSSTOG00000020917) #8	SLC44A4 (ENSSTOG00000020040) #9	NEU1 (ENSSTOG00000013187) #10	ENSSTOG00000029617 #11	ENSSTOG00000033750 #11	HSPA1L (ENSSTOG00000029893) #13	LSM2 (ENSSTOG00000013144) ##14	VARS1 (ENSSTOG00000013112) #15	VWA7 (ENSSTOG00000013089) #16	SAPCD1 (ENSSTOG00000020002) #17	MSH5 (ENSSTOG00000013079) #18	CLIC1 (ENSSTOG00000027220) #19	DDAH2 (ENSSTOG00000020601) #20	MPIG6B (ENSSTOG00000013076) #21	LY6G6C (ENSSTOG00000013066) #22	LY6G6D (ENSSTOG00000031597) #23	ENSSTOG00000020346 #24	ENSSTOG00000013043 #25	ABHD16A (ENSSTOG00000013021) #26	LY6G5C (ENSSTOG00000013012) #27	LY6G5B (ENSSTOG00000031349)	CSNK2B (ENSSTOG00000012999) #28	GPANK1 (ENSSTOG00000024202) #29	APOM (ENSSTOG00000029890) #31	C6orf47 (ENSSTOG00000012996) #30	BAG6 (ENSSTOG00000012950) #33	PRRC2A (ENSSTOG00000012911) #34	AIF1 (ENSSTOG00000023471) #35	LTB (ENSSTOG00000012888)	LST1 (ENSSTOG00000032795) #37
Arctic ground squirrel	MODERN SPECIES	662	C2 (ENSUPAG00010020070)	ZBTB12 (ENSUPAG00010020115) #7	EHMT2 (ENSUPAG00010020118) #8	NEU1 (ENSUPAG00010020203) #10	ENSUPAG00010020208 #11	ENSUPAG00010020209	HSPA1L (ENSUPAG00010020211) #13	ENSUPAG00010020214 ##14	VARS1 (ENSUPAG00010020220) #15	VWA7 (ENSUPAG00010020234) #16	SAPCD1 (ENSUPAG00010020268) #17	MSH5 (ENSUPAG00010020275) #18	CLIC1 (ENSUPAG00010020314) #19	DDAH2 (ENSUPAG00010020318) #20	MPIG6B (ENSUPAG00010020337) #21	LY6G6C (ENSUPAG00010020345) #22	LY6G6D (ENSUPAG00010020352) #23	ENSUPAG00010020357 #24	ENSUPAG00010020367 #25	ABHD16A (ENSUPAG00010020393) #26	LY6G5C (ENSUPAG00010020418) #27	LY6G5B (ENSUPAG00010020428)	CSNK2B (ENSUPAG00010020432) #28	GPANK1 (ENSUPAG00010020443) #29	C6orf47 (ENSUPAG00010020444) #30	APOM (ENSUPAG00010020447) #31	BAG6 (ENSUPAG00010020455) #33	ENSUPAG00010020559 #34	AIF1 (ENSUPAG00010020591) #35	ENSUPAG00010020595	LTB (ENSUPAG00010020598)
Alpin marmot	MODERN SPECIES	20	C2 (ENSMMMG00000017046)	ZBTB12 (ENSMMMG00000017035) #7	EHMT2 (ENSMMMG00000010523) #8	SLC44A4 (ENSMMMG00000010455) #9	NEU1 (ENSMMMG00000010432) #10	ENSMMMG00000010423 #11	HSPA1L (ENSMMMG00000010419) #13	LSM2 (ENSMMMG00000010414) ##14	VARS1 (ENSMMMG00000010374) #15	VWA7 (ENSMMMG00000010320) #16	SAPCD1 (ENSMMMG00000010310) #17	MSH5 (ENSMMMG00000010239) #18	CLIC1 (ENSMMMG00000010225) #19	DDAH2 (ENSMMMG00000010203) #20	MPIG6B (ENSMMMG00000010181) #21	LY6G6C (ENSMMMG00000010168) #22	LY6G6D (ENSMMMG00000010160) #23	ENSMMMG00000010150 #24	ENSMMMG00000010039 #25	ABHD16A (ENSMMMG00000010000) #26	LY6G5C (ENSMMMG00000009985) #27	LY6G5B (ENSMMMG00000009976)	CSNK2B (ENSMMMG00000009952) #28	GPANK1 (ENSMMMG00000009943) #29	C6orf47 (ENSMMMG00000009937) #30	APOM (ENSMMMG00000009933) #31	BAG6 (ENSMMMG00000009484) #33	PRRC2A (ENSMMMG00000009386) #34	AIF1 (ENSMMMG00000009366) #35	ENSMMMG00000009348	LTB (ENSMMMG00000009341)
Eurasian red squirrel	MODERN SPECIES	16	NELFE (ENSSVLG00005013975)	ZBTB12 (ENSSVLG00005015684) #7	EHMT2 (ENSSVLG00005015794) #8	SLC44A4 (ENSSVLG00005016167) #9	NEU1 (ENSSVLG00005016819) #10	ENSSVLG00005016858 #11	HSPA1L (ENSSVLG00005016879) #13	ENSSVLG00005016911 ##14	VARS1 (ENSSVLG00005016986) #15	VWA7 (ENSSVLG00005017120) #16	SAPCD1 (ENSSVLG00005017335) #17	MSH5 (ENSSVLG00005017475) #18	CLIC1 (ENSSVLG00005018219) #19	DDAH2 (ENSSVLG00005018334) #20	MPIG6B (ENSSVLG00005018418) #21	LY6G6C (ENSSVLG00005018810) #22	LY6G6D (ENSSVLG00005018868) #23	ENSSVLG00005018920 #24	ENSSVLG00005019003 #25	ABHD16A (ENSSVLG00005019075) #26	LY6G5C (ENSSVLG00005019147) #27	LY6G5B (ENSSVLG00005019209)	CSNK2B (ENSSVLG00005019334) #28	GPANK1 (ENSSVLG00005019425) #29	C6orf47 (ENSSVLG00005019462) #30	APOM (ENSSVLG00005019573) #31	BAG6 (ENSSVLG00005019737) #33	PRRC2A (ENSSVLG00005019862) #34	AIF1 (ENSSVLG00005004222) #35	NCR3 (ENSSVLG00005004259) #36	LST1 (ENSSVLG00005004292) #37