Percora_a	ANCESTRAL SPECIES	22	ENSGT00390000010825.a #7	ENSGT00940000155614 #8	ENSGT00940000159667 #9	ENSGT00940000161236.a.a #10	ENSGT00980000198762 #11	ENSGT00940000162496	ENSGT00890000139436.A.b #12	ENSGT00940000162389	ENSGT00940000162070 #13	ENSGT00940000163245 #15	ENSGT00940000160559 #16	ENSGT00390000008621 #17	ENSGT01040000240679 #18	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000166843.d #24	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a #36	ENSGT00940000162529 #37
Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000155614 #8	ENSGT00940000159667 #9	ENSGT00940000161236.a.a #10	ENSGT00980000198762 #11	ENSGT00940000162496	ENSGT00890000139436.A.b #12	ENSGT00940000162389	ENSGT00940000162070 #13	ENSGT00940000163245 #15	ENSGT00940000160559 #16	ENSGT00390000008621 #17	ENSGT01040000240679 #18	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00390000010770.p #21	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000166843.d #24	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a #36	ENSGT00940000162529 #37
Caprinae	ANCESTRAL SPECIES	40	ENSGT00390000010825.a #7	ENSGT00940000155614 #8	ENSGT00940000159667 #9	ENSGT00940000161236.a.a #10	ENSGT00980000198762 #11	ENSGT00940000162496	ENSGT00890000139436.A.b #12	ENSGT00940000162070 #13	ENSGT00940000163245 #15	ENSGT00940000160559 #16	ENSGT00390000008621 #17	ENSGT01040000240679 #18	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00390000010770.p #21	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000166843.d #24	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a.d #36	ENSGT00940000162529 #37
Rambouillet Sheep	MODERN SPECIES	205	RIBC1 (ENSOARG00020009197) #7	SMC1A (ENSOARG00020009423) #8	IQSEC2 (ENSOARG00020009706) #9	KDM5C (ENSOARG00020010636) #10	KANTR (ENSOARG00020011854) #11	GPR173 (ENSOARG00020011993) #12	MAGED1 (ENSOARG00020012029) #13	ENSOARG00020012125 #14	GSPT2 (ENSOARG00020012218) #15	NUDT11 (ENSOARG00020012251) #16	ENSOARG00020012280 #17	NUDT10 (ENSOARG00020012367) #18	BMP15 (ENSOARG00020012408) #19	SHROOM4 (ENSOARG00020012479) #20	ENSOARG00020012881 #21	DGKK (ENSOARG00020012970) #22	AKAP4 (ENSOARG00020013343) #23	ENSOARG00020013454 #24	CLCN5 (ENSOARG00020013496) #25	USP27X (ENSOARG00020013745) #26	ENSOARG00020013763 #27	ENSOARG00020013820 #28	ENSOARG00020013855 #29	PPP1R3F (ENSOARG00020013933) #30	FOXP3 (ENSOARG00020014024) #31	CCDC22 (ENSOARG00020014199) #32	CACNA1F (ENSOARG00020014375) #33	SYP (ENSOARG00020015519) #34	PRICKLE3 (ENSOARG00020015597) #35	ENSOARG00020015731 #36	MAGIX (ENSOARG00020015816) #37
Goat	MODERN SPECIES	29	ENSCHIG00000015812	PJA1 (ENSCHIG00000004788)	STARD8 (ENSCHIG00000015274)	YIPF6 (ENSCHIG00000019783)	OPHN1 (ENSCHIG00000019770)	AR (ENSCHIG00000021567)	ENSCHIG00000003303	MAGED1 (ENSCHIG00000016796) #13	ENSCHIG00000019129 #16	ENSCHIG00000019459 #16	BMP15 (ENSCHIG00000015206) #19	ENSCHIG00000006759 #20	ENSCHIG00000017637 #20	ENSCHIG00000020347 ##21	ENSCHIG00000011877	DGKK (ENSCHIG00000015820) #22	ENSCHIG00000012320	AKAP4 (ENSCHIG00000016779) #23	CLCN5 (ENSCHIG00000024205) #25	PAGE4 (ENSCHIG00000024315) #27	ENSCHIG00000013710 #29	ZNF182 (ENSCHIG00000012157)	ENSCHIG00000021108	ENSCHIG00000018409	ENSCHIG00000024352	ENSCHIG00000003138	ENSCHIG00000007149	EDA2R (ENSCHIG00000006486)	ENSCHIG00000014804	CHST7 (ENSCHIG00000019628)	SLC9A7 (ENSCHIG00000019865)
Bovinae	ANCESTRAL SPECIES	38											ENSGT00390000008621 #17	ENSGT00940000160559 #16	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00390000010770.o.b ##21	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000166843.d #24	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a #36	ENSGT00940000162529 #37
Bos	ANCESTRAL SPECIES	30	ENSGT00940000161236.a.a #10	ENSGT00980000198762 #11	ENSGT00940000162496	ENSGT00890000139436.A.b #12	ENSGT00940000162389	ENSGT00940000162070 #13	ENSGT00940000163245 #15	ENSGT00940000160559.k.b #16	ENSGT00390000008621 #17	ENSGT00940000160559.l #16	ENSGT00940000160559.k.a #16	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00390000010770.o.b ##21	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.b.b.a	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000166843.d #24	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a #36	ENSGT00940000162529 #37
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000159667 #9	ENSGT00940000161236.a.a #10	ENSGT00980000198762 #11	ENSGT00940000162496	ENSGT00890000139436.A.b #12	ENSGT00940000162389	ENSGT00940000162070 #13	ENSGT00940000163245 #15	ENSGT00940000160559.k.b #16	ENSGT00390000008621 #17	ENSGT00940000160559.k.a #16	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00390000010770.o.b ##21	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.b.b.a	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000166843.d #24	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a #36	ENSGT00940000162529 #37
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005011953	ENSBIXG00005011938	ENSBIXG00005011913	ENSBIXG00005006789	MAGED1 (ENSBIXG00005011873) #13	ENSBIXG00005011730	ENSBIXG00005011678	GSPT2 (ENSBIXG00005011669) #15	ENSBIXG00005011653	ENSBIXG00005001143 #16	ENSBIXG00005011623 #17	ENSBIXG00005011591 #16	ENSBIXG00005011567 #19	SHROOM4 (ENSBIXG00005011523) #20	ENSBIXG00005011390	DGKK (ENSBIXG00005001092) #22	ENSBIXG00005011329	AKAP4 (ENSBIXG00005011308) #23	CLCN5 (ENSBIXG00005011268) #25	USP27X (ENSBIXG00005011172) #26	PAGE4 (ENSBIXG00005011158) #27	ENSBIXG00005011113 #29	PPP1R3F (ENSBIXG00005011099) #30	FOXP3 (ENSBIXG00005001010) #31	CCDC22 (ENSBIXG00005011010) #32	CACNA1F (ENSBIXG00005010972) #33	SYP (ENSBIXG00005010626) #34	PRICKLE3 (ENSBIXG00005010598) #35	ENSBIXG00005000710 #36	MAGIX (ENSBIXG00005010541) #37	GPKOW (ENSBIXG00005007520)
Cow	MODERN SPECIES	177	TSPYL2 (ENSBTAG00000017783)	GPR173 (ENSBTAG00000017767) #12	ENSBTAG00000052987	MAGED4B (ENSBTAG00000048077)	MAGED1 (ENSBTAG00000008733) #13	ENSBTAG00000053722	GSPT2 (ENSBTAG00000013311) #15	ENSBTAG00000052977	NUDT11 (ENSBTAG00000005252) #16	EZHIP (ENSBTAG00000054170) #17	NUDT10 (ENSBTAG00000054383) #16	BMP15 (ENSBTAG00000045782) #19	SHROOM4 (ENSBTAG00000002996) #20	ENSBTAG00000054140 ##21	ENSBTAG00000055147	DGKK (ENSBTAG00000022962) #22	CCNB3 (ENSBTAG00000046286)	AKAP4 (ENSBTAG00000016399) #23	ENSBTAG00000050832 #24	CLCN5 (ENSBTAG00000001507) #25	USP27X (ENSBTAG00000039391) #26	PAGE4 (ENSBTAG00000037728) #27	ENSBTAG00000052071 #29	PPP1R3F (ENSBTAG00000021100) #30	FOXP3 (ENSBTAG00000013279) #31	CCDC22 (ENSBTAG00000013277) #32	CACNA1F (ENSBTAG00000016097) #33	SYP (ENSBTAG00000016096) #34	PRICKLE3 (ENSBTAG00000016095) #35	PLP2 (ENSBTAG00000016093) #36	MAGIX (ENSBTAG00000013278) #37
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000161236.a.a #10	ENSGT00980000198762 #11	ENSGT00940000162496	ENSGT00890000139436.A.b #12	ENSGT00940000162389	ENSGT00940000162070 #13	ENSGT00940000163245 #15	ENSGT00940000160559.k.b #16	ENSGT00390000008621 #17	ENSGT00940000160559.l #16	ENSGT00940000160559.k.a #16	ENSGT00940000160940 #19	ENSGT00940000159479 #20	ENSGT00390000010770.p #21	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.b.b.a	ENSGT00940000162262 #22	ENSGT00940000160459	ENSGT00940000153313.C.a #23	ENSGT00940000153763.a #25	ENSGT00940000162674 #26	ENSGT00940000153097.C #27	ENSGT00940000153097.A #29	ENSGT00390000013859 #30	ENSGT00940000161807 #31	ENSGT00390000003809 #32	ENSGT00940000159855 #33	ENSGT01030000234637.b.c #34	ENSGT00940000153629.a.b #35	ENSGT00940000158528.y.a #36	ENSGT00940000162529 #37	ENSGT00390000015154
Domestic yak	MODERN SPECIES	69	GPR173 (ENSBGRG00000025735) #12	ENSBGRG00000025727	ENSBGRG00000025715	ENSBGRG00000025677	MAGED1 (ENSBGRG00000025655) #13	GSPT2 (ENSBGRG00000025638) #15	ENSBGRG00000025631	ENSBGRG00000025627 #16	ENSBGRG00000025614 #17	ENSBGRG00000025611 #16	BMP15 (ENSBGRG00000025602) #19	ENSBGRG00000025598	ENSBGRG00000025572 #20	ENSBGRG00000025568 #21	ENSBGRG00000025564	DGKK (ENSBGRG00000025554) #22	ENSBGRG00000025534	ENSBGRG00000025520 #23	CLCN5 (ENSBGRG00000025456) #25	USP27X (ENSBGRG00000025445) #26	ENSBGRG00000025435 #27	ENSBGRG00000025419 #29	PPP1R3F (ENSBGRG00000025406) #30	FOXP3 (ENSBGRG00000025258) #31	CCDC22 (ENSBGRG00000025162) #32	CACNA1F (ENSBGRG00000021471) #33	SYP (ENSBGRG00000021237) #34	PRICKLE3 (ENSBGRG00000021159) #35	ENSBGRG00000020922 #37	ENSBGRG00000020865	GPKOW (ENSBGRG00000020742)
Siberian musk deer	MODERN SPECIES	1188												ENSMMSG00000016436 #17	ENSMMSG00000016411 #16	BMP15 (ENSMMSG00000016384) #19	SHROOM4 (ENSMMSG00000016224) #20	DGKK (ENSMMSG00000016051) #22	ENSMMSG00000015990	ENSMMSG00000015951 #23	ENSMMSG00000015920 #24	CLCN5 (ENSMMSG00000015849) #25	USP27X (ENSMMSG00000015836) #26	ENSMMSG00000015825 #27