Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000155614 ENSGT00940000159667 ENSGT00940000161236.a.a ENSGT00980000198762 ENSGT00940000162496 ENSGT00890000139436.A.b ENSGT00510000049526 ENSGT00940000162070 #17 ENSGT00940000162389 ENSGT00940000163245 ENSGT00940000160559 ENSGT00390000008621 ENSGT01040000240679 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Glires ANCESTRAL SPECIES 10 ENSGT00940000155614 ENSGT00940000159667 ENSGT00940000161236.a.a ENSGT00980000198762 ENSGT00940000162496 ENSGT00890000139436.A.b ENSGT00510000049526 ENSGT00940000162070 #17 ENSGT00940000162389 ENSGT00940000163245 ENSGT00940000160559 ENSGT00390000008621 ENSGT01040000240679 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Rodentia ANCESTRAL SPECIES 10 ENSGT00940000155614 ENSGT00940000159667 ENSGT00940000161236.a.a ENSGT00980000198762 ENSGT00940000162496 ENSGT00890000139436.A.b ENSGT00510000049526 ENSGT00940000162070 #17 ENSGT00940000162389 ENSGT00940000163245 ENSGT00940000160559 ENSGT00390000008621 ENSGT01040000240679 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000155614 ENSGT00940000159667 ENSGT00940000161236.a.a ENSGT00980000198762 ENSGT00940000162496 ENSGT00890000139436.A.b ENSGT00510000049526 ENSGT00940000162070 #17 ENSGT00940000162389 ENSGT00940000163245 ENSGT00940000160559 ENSGT00390000008621 ENSGT01040000240679 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000157847 ENSGT00940000156319 ENSGT00940000155170 ENSGT00390000010825.a ENSGT00940000155614 ENSGT00940000159667 ENSGT00940000161236.a.a ENSGT00940000162496 ENSGT00890000139436.A.b ENSGT00510000049526 ENSGT00940000162389 ENSGT00940000162070 #17 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT01090000262464 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154.k #34 ENSGT00940000155657 #35 Hystricomorpha_a ANCESTRAL SPECIES 56 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154.k #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Hystricomorpha_b ANCESTRAL SPECIES 81 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154.k #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 ENSGT00940000154102.b #37 Long-tailed chinchilla MODERN SPECIES 250 MAGED1 (ENSCLAG00000002620) #17 ENSCLAG00000004437 #18 ENSCLAG00000004109 #19 ENSCLAG00000003915 #20 ENSCLAG00000003634 #21 DGKK (ENSCLAG00000003053) #22 AKAP4 (ENSCLAG00000010688) #23 CLCN5 (ENSCLAG00000002896) #24 ENSCLAG00000002546 #25 PPP1R3F (ENSCLAG00000002068) #26 FOXP3 (ENSCLAG00000005172) #27 CCDC22 (ENSCLAG00000003978) #28 CACNA1F (ENSCLAG00000002756) #29 SYP (ENSCLAG00000004119) #30 PRICKLE3 (ENSCLAG00000003916) #31 PLP2 (ENSCLAG00000002630) #32 MAGIX (ENSCLAG00000002281) #33 ENSCLAG00000002220 #34 WDR45 (ENSCLAG00000005420) #35 PRAF2 (ENSCLAG00000004889) #36 CCDC120 (ENSCLAG00000003931) #37 Degu MODERN SPECIES 304 BMP15 (ENSODEG00000000854) #20 ENSODEG00000000886 ENSODEG00000001005 #21 DGKK (ENSODEG00000001078) #22 AKAP4 (ENSODEG00000001223) #23 ENSODEG00000018669 ENSODEG00000001449 CLCN5 (ENSODEG00000001495) #24 ENSODEG00000001517 USP27X (ENSODEG00000001537) ENSODEG00000018712 ENSODEG00000018701 ENSODEG00000018700 PPP1R3F (ENSODEG00000001563) #26 FOXP3 (ENSODEG00000001628) #27 CCDC22 (ENSODEG00000001642) #28 ENSODEG00000001692 #29 SYP (ENSODEG00000001808) #30 PRICKLE3 (ENSODEG00000001845) #31 Guinea pig MODERN SPECIES 158 GSPT2 (ENSCPOG00000007083) ENSCPOG00000032273 ENSCPOG00000003936 #17 ENSCPOG00000025043 BMP15 (ENSCPOG00000005516) #20 SHROOM4 (ENSCPOG00000004777) #21 DGKK (ENSCPOG00000000486) #22 ENSCPOG00000038647 AKAP4 (ENSCPOG00000008990) #23 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000042632 ENSHGLG00000000112 #17 ENSHGLG00000001568 ENSHGLG00000001763 ENSHGLG00000019797 ENSHGLG00000001529 ENSHGLG00000001504 ENSHGLG00000048545 ENSHGLG00000046118 ENSHGLG00000004390 #20 ENSHGLG00000048631 ENSHGLG00000003542 SHROOM4 (ENSHGLG00000003286) #21 ENSHGLG00000038624 ENSHGLG00000003106 ENSHGLG00000002872 #22 ENSHGLG00000002751 ENSHGLG00000002579 ENSHGLG00000002181 ENSHGLG00000002863 ENSHGLG00000035843 ENSHGLG00000046679 ENSHGLG00000001046 ENSHGLG00000000969 UXT (ENSHGLG00000000945) ELK1 (ENSHGLG00000000926) CFP (ENSHGLG00000000905) TIMP1 (ENSHGLG00000000794) SYN1 (ENSHGLG00000000779) ENSHGLG00000000754 ENSHGLG00000043935 Sciuridae ANCESTRAL SPECIES 28 ENSGT00390000010825.a ENSGT00940000155614 ENSGT00940000159667 ENSGT00940000161236.a.a ENSGT00980000198762 ENSGT00940000162496 ENSGT00890000139436.A.b ENSGT00940000162070 #17 ENSGT00940000162389 ENSGT00940000163245 ENSGT00940000160559 ENSGT00390000008621 ENSGT01040000240679 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Eurasian red squirrel MODERN SPECIES 156 TSPYL2 (ENSSVLG00005015733) GPR173 (ENSSVLG00005015827) ENSSVLG00005015851 ENSSVLG00005015867 ENSSVLG00005015906 MAGED1 (ENSSVLG00005015981) #17 ENSSVLG00005016087 GSPT2 (ENSSVLG00005016154) ENSSVLG00005016175 ENSSVLG00005016195 ENSSVLG00005016209 NUDT11 (ENSSVLG00005016221) NUDT10 (ENSSVLG00005016353) BMP15 (ENSSVLG00005016372) #20 SHROOM4 (ENSSVLG00005016405) #21 DGKK (ENSSVLG00005016570) #22 ENSSVLG00005016807 AKAP4 (ENSSVLG00005016895) #23 CLCN5 (ENSSVLG00005017046) #24 USP27X (ENSSVLG00005017235) PPP1R3F (ENSSVLG00005017275) #26 FOXP3 (ENSSVLG00005017363) #27 CCDC22 (ENSSVLG00005017751) #28 CACNA1F (ENSSVLG00005017838) #29 SYP (ENSSVLG00005019132) #30 PRICKLE3 (ENSSVLG00005019231) #31 PLP2 (ENSSVLG00005019309) #32 MAGIX (ENSSVLG00005019436) #33 GPKOW (ENSSVLG00005019537) #34 ENSSVLG00005019742 #35 PRAF2 (ENSSVLG00005019896) #36 Marmotini ANCESTRAL SPECIES 81 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Marmotini_b ANCESTRAL SPECIES 120 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Arctic ground squirrel MODERN SPECIES 341 SHROOM4 (ENSUPAG00010004734) #21 DGKK (ENSUPAG00010004707) #22 CCNB3 (ENSUPAG00010004626) AKAP4 (ENSUPAG00010004604) #23 CLCN5 (ENSUPAG00010004559) #24 USP27X (ENSUPAG00010004551) PPP1R3F (ENSUPAG00010004546) #26 FOXP3 (ENSUPAG00010004085) #27 CCDC22 (ENSUPAG00010004020) #28 CACNA1F (ENSUPAG00010003865) #29 SYP (ENSUPAG00010003851) #30 PRICKLE3 (ENSUPAG00010003840) #31 PLP2 (ENSUPAG00010003832) #32 MAGIX (ENSUPAG00010003732) #33 GPKOW (ENSUPAG00010003718) #34 ENSUPAG00010003688 WDR45 (ENSUPAG00010003384) #35 Squirrel MODERN SPECIES 321 ENSSTOG00000016561 #21 DGKK (ENSSTOG00000008354) #22 AKAP4 (ENSSTOG00000027547) #23 CLCN5 (ENSSTOG00000013403) #24 USP27X (ENSSTOG00000023186) PPP1R3F (ENSSTOG00000004440) #26 FOXP3 (ENSSTOG00000004416) #27 CCDC22 (ENSSTOG00000004377) #28 CACNA1F (ENSSTOG00000023000) #29 SYP (ENSSTOG00000004361) #30 PRICKLE3 (ENSSTOG00000014600) #31 PLP2 (ENSSTOG00000014609) #32 MAGIX (ENSSTOG00000004371) #33 GPKOW (ENSSTOG00000014593) #34 ENSSTOG00000010517 WDR45 (ENSSTOG00000009683) #35 PRAF2 (ENSSTOG00000009679) #36 Alpin marmot MODERN SPECIES 120 SHROOM4 (ENSMMMG00000011031) #21 ENSMMMG00000011066 #22 ENSMMMG00000011074 AKAP4 (ENSMMMG00000011139) #23 CLCN5 (ENSMMMG00000011163) #24 USP27X (ENSMMMG00000011213) ENSMMMG00000011217 #26 FOXP3 (ENSMMMG00000011227) #27 CCDC22 (ENSMMMG00000011289) #28 CACNA1F (ENSMMMG00000011341) #29 SYP (ENSMMMG00000011496) #30 PRICKLE3 (ENSMMMG00000011502) #31 PLP2 (ENSMMMG00000011522) #32 MAGIX (ENSMMMG00000011527) #33 GPKOW (ENSMMMG00000011535) #34 WDR45 (ENSMMMG00000011555) #35 ENSMMMG00000011713 #36 Rodentia_B ANCESTRAL SPECIES 31 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Kangaroo rat MODERN SPECIES 473 ENSDORG00000027885 ENSDORG00000029529 Bmp15 (ENSDORG00000013624) #20 Shroom4 (ENSDORG00000000705) #21 Dgkk (ENSDORG00000006816) #22 Akap4 (ENSDORG00000014873) #23 ENSDORG00000010063 ENSDORG00000025389 Clcn5 (ENSDORG00000012593) #24 Usp27x (ENSDORG00000029639) Ppp1r3f (ENSDORG00000025455) #26 Foxp3 (ENSDORG00000000868) #27 Ccdc22 (ENSDORG00000000867) #28 ENSDORG00000030242 #29 Syp (ENSDORG00000000864) #30 Prickle3 (ENSDORG00000003456) #31 ENSDORG00000003454 #32 Magix (ENSDORG00000027723) #33 Gpkow (ENSDORG00000013663) #34 ENSDORG00000013938 #35 Myomorpha ANCESTRAL SPECIES 6 ENSGT00950000182835.c.c ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00950000182925.D.a.b.a.a.a.b ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Muroidea ANCESTRAL SPECIES 30 ENSGT00950000182835.c.c ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00950000182925.D.a.b.a.a.a.b ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00940000167111 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Cricetidae ANCESTRAL SPECIES 8 ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00940000167111 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00940000167111 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ENSGT00950000182925.D.a.b.a.a.a.b.a.b.a ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Golden Hamster MODERN SPECIES 799 ENSMAUG00000014381 ENSMAUG00000013990 Bmp15 (ENSMAUG00000013560) #20 ENSMAUG00000007539 #21 Dgkk (ENSMAUG00000012411) #22 Ccnb3 (ENSMAUG00000004259) ENSMAUG00000021928 #23 Clcn5 (ENSMAUG00000008112) #24 Usp27x (ENSMAUG00000002688) Ppp1r3f (ENSMAUG00000009301) #26 Foxp3 (ENSMAUG00000016148) #27 Ccdc22 (ENSMAUG00000019029) #28 Cacna1f (ENSMAUG00000021438) #29 Syp (ENSMAUG00000016225) #30 Prickle3 (ENSMAUG00000014616) #31 ENSMAUG00000019174 #32 Magix (ENSMAUG00000011901) #33 Wdr45 (ENSMAUG00000011036) #35 Ccdc120 (ENSMAUG00000000888) #37 Tfe3 (ENSMAUG00000002865) Chinese hamster chok1gshd MODERN SPECIES 175 ENSCGRG00001018471 ENSCGRG00001000978 ENSCGRG00001023144 Mycs (ENSCGRG00001000792) ENSCGRG00001003982 ENSCGRG00001000208 ENSCGRG00001010729 ENSCGRG00001007007 ENSCGRG00001022547 ENSCGRG00001007687 ENSCGRG00001008851 ENSCGRG00001009060 ENSCGRG00001001286 Bmp15 (ENSCGRG00001012329) #20 Shroom4 (ENSCGRG00001016683) #21 Dgkk (ENSCGRG00001005491) #22 Ccnb3 (ENSCGRG00001016975) Akap4 (ENSCGRG00001022827) #23 ENSCGRG00001000058 Clcn5 (ENSCGRG00001017810) #24 ENSCGRG00001006356 Ppp1r3f (ENSCGRG00001022530) #26 Foxp3 (ENSCGRG00001021426) #27 Ccdc22 (ENSCGRG00001023162) #28 Cacna1f (ENSCGRG00001013804) #29 Syp (ENSCGRG00001016610) #30 Prickle3 (ENSCGRG00001023920) #31 ENSCGRG00001014295 #32 Magix (ENSCGRG00001015068) #33 Gpkow (ENSCGRG00001016210) #34 Wdr45 (ENSCGRG00001012955) #35 Cricetidae_B ANCESTRAL SPECIES 45 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Northern American deer mouse MODERN SPECIES 475 ENSPEMG00000026118 Mageh1 (ENSPEMG00000003236) Usp51 (ENSPEMG00000022623) ENSPEMG00000027395 ENSPEMG00000024891 Mycs (ENSPEMG00000026712) ENSPEMG00000016072 ENSPEMG00000030562 ENSPEMG00000030440 ENSPEMG00000025360 ENSPEMG00000031215 ENSPEMG00000027174 Bmp15 (ENSPEMG00000026057) #20 Shroom4 (ENSPEMG00000022302) #21 ENSPEMG00000028579 Dgkk (ENSPEMG00000022777) #22 Ccnb3 (ENSPEMG00000022596) Akap4 (ENSPEMG00000023845) #23 Clcn5 (ENSPEMG00000011139) #24 Usp27x (ENSPEMG00000005635) Ppp1r3f (ENSPEMG00000015653) #26 Foxp3 (ENSPEMG00000012847) #27 Ccdc22 (ENSPEMG00000015959) #28 Cacna1f (ENSPEMG00000009739) #29 Syp (ENSPEMG00000007762) #30 Prickle3 (ENSPEMG00000005910) #31 ENSPEMG00000012167 #32 Magix (ENSPEMG00000025490) #33 Gpkow (ENSPEMG00000009966) #34 Wdr45 (ENSPEMG00000015281) #35 Praf2 (ENSPEMG00000029377) #36 Prairie vole MODERN SPECIES 1 Ift74 (ENSMOCG00000002321) Lrrc19 (ENSMOCG00000008422) Tek (ENSMOCG00000017310) Eqtn (ENSMOCG00000018858) Mysm1 (ENSMOCG00000001327) Jun (ENSMOCG00000006483) Fggy (ENSMOCG00000017533) ENSMOCG00000016214 Hook1 (ENSMOCG00000020291) ENSMOCG00000017305 ENSMOCG00000000673 ENSMOCG00000007014 ENSMOCG00000022364 Bmp15 (ENSMOCG00000000837) #20 Shroom4 (ENSMOCG00000014195) #21 Dgkk (ENSMOCG00000019385) #22 Ccnb3 (ENSMOCG00000002143) Akap4 (ENSMOCG00000018265) #23 Clcn5 (ENSMOCG00000015506) #24 ENSMOCG00000013352 Usp27x (ENSMOCG00000006681) Ppp1r3f (ENSMOCG00000002362) #26 Foxp3 (ENSMOCG00000008698) #27 Ccdc22 (ENSMOCG00000012776) #28 Cacna1f (ENSMOCG00000003974) #29 Syp (ENSMOCG00000001534) #30 Prickle3 (ENSMOCG00000022909) #31 ENSMOCG00000013471 #32 Magix (ENSMOCG00000016030) #33 Gpkow (ENSMOCG00000019251) #34 ENSMOCG00000004994 Murinae ANCESTRAL SPECIES 33 ENSGT00730000112586 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Mus ANCESTRAL SPECIES 9 ENSGT00730000112586 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Mus_A ANCESTRAL SPECIES 15 ENSGT00730000112586 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Mus_B ANCESTRAL SPECIES 14 ENSGT00940000158432.bb.b.a ENSGT00940000163246 ENSGT00730000112586 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 Mouse MODERN SPECIES 37 Btbd35f10 (ENSMUSG00000095716) Btbd35f16 (ENSMUSG00000101381) Btbd35f3 (ENSMUSG00000078218) Btbd35f28 (ENSMUSG00000094307) Btbd35f20 (ENSMUSG00000094596) Btbd35f17 (ENSMUSG00000094273) Btbd35f4 (ENSMUSG00000078213) Btbd35f27 (ENSMUSG00000094860) Mycs (ENSMUSG00000044597) Btbd35f7 (ENSMUSG00000095814) Nudt11 (ENSMUSG00000073295) Ezhip (ENSMUSG00000073294) Nudt10 (ENSMUSG00000073293) Bmp15 (ENSMUSG00000023279) #20 Shroom4 (ENSMUSG00000068270) #21 Dgkk (ENSMUSG00000062393) #22 Ccnb3 (ENSMUSG00000051592) Akap4 (ENSMUSG00000050089) #23 Clcn5 (ENSMUSG00000004317) #24 Usp27x (ENSMUSG00000046269) Ppp1r3f (ENSMUSG00000039556) #26 Foxp3 (ENSMUSG00000039521) #27 Ccdc22 (ENSMUSG00000031143) #28 Cacna1f (ENSMUSG00000031142) #29 Syp (ENSMUSG00000031144) #30 Prickle3 (ENSMUSG00000031145) #31 Plp2 (ENSMUSG00000031146) #32 Magix (ENSMUSG00000031147) #33 Gpkow (ENSMUSG00000031148) #34 Wdr45 (ENSMUSG00000039382) #35 Gm45208 (ENSMUSG00000109493) Mus_C ANCESTRAL SPECIES 27 ENSGT00940000158432.bb.b.a ENSGT00940000163246 ENSGT00730000112586 ENSGT00940000160559 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 ENSGT00940000153313.C.a #23 ENSGT00940000153763.a #24 ENSGT00940000162674 ENSGT00390000013859 #26 ENSGT00940000161807 #27 ENSGT00390000003809 #28 ENSGT00940000159855 #29 ENSGT01030000234637.b.c #30 ENSGT00940000153629.a.b #31 ENSGT00940000158528 #32 ENSGT00940000162529 #33 ENSGT00390000015154 #34 ENSGT00940000155657 #35 ENSGT00390000008631.b #36 spretus MODERN SPECIES 19 Mycs (MGP_SPRETEiJ_G0034022) Ezhip (MGP_SPRETEiJ_G0034023) MGP_SPRETEiJ_G0034024 Bmp15 (MGP_SPRETEiJ_G0034025) #20 Shroom4 (MGP_SPRETEiJ_G0034026) #21 Dgkk (MGP_SPRETEiJ_G0034027) #22 Ccnb3 (MGP_SPRETEiJ_G0034028) Akap4 (MGP_SPRETEiJ_G0034029) #23 Clcn5 (MGP_SPRETEiJ_G0034030) #24 Usp27x (MGP_SPRETEiJ_G0034031) Ppp1r3f (MGP_SPRETEiJ_G0034032) #26 Foxp3 (MGP_SPRETEiJ_G0034033) #27 Ccdc22 (MGP_SPRETEiJ_G0034034) #28 Cacna1f (MGP_SPRETEiJ_G0034035) #29 Syp (MGP_SPRETEiJ_G0034036) #30 Prickle3 (MGP_SPRETEiJ_G0034037) #31 MGP_SPRETEiJ_G0034039 #32 MGP_SPRETEiJ_G0034038 #32 Magix (MGP_SPRETEiJ_G0034040) #33 MGP_SPRETEiJ_G0034041 #34 Wdr45 (MGP_SPRETEiJ_G0034042) #35 Steppe mouse MODERN SPECIES 2440 ENSMSIG00000031424 #22 Ccnb3 (ENSMSIG00000031429) Akap4 (ENSMSIG00000031432) #23 Clcn5 (ENSMSIG00000031435) #24 Ryukyu mouse MODERN SPECIES 19 MGP_CAROLIEiJ_G0032875 Ezhip (MGP_CAROLIEiJ_G0032876) Bmp15 (MGP_CAROLIEiJ_G0032877) #20 Shroom4 (MGP_CAROLIEiJ_G0032878) #21 Dgkk (MGP_CAROLIEiJ_G0032879) #22 Ccnb3 (MGP_CAROLIEiJ_G0032880) Akap4 (MGP_CAROLIEiJ_G0032881) #23 Clcn5 (MGP_CAROLIEiJ_G0032882) #24 Usp27x (MGP_CAROLIEiJ_G0032883) Ppp1r3f (MGP_CAROLIEiJ_G0032884) #26 Foxp3 (MGP_CAROLIEiJ_G0032885) #27 Ccdc22 (MGP_CAROLIEiJ_G0032886) #28 Cacna1f (MGP_CAROLIEiJ_G0032887) #29 Syp (MGP_CAROLIEiJ_G0032888) #30 Prickle3 (MGP_CAROLIEiJ_G0032889) #31 MGP_CAROLIEiJ_G0032891 #32 MGP_CAROLIEiJ_G0032890 #32 Magix (MGP_CAROLIEiJ_G0032892) #33 Gpkow (MGP_CAROLIEiJ_G0032893) #34 Wdr45 (MGP_CAROLIEiJ_G0032894) #35 Shrew mouse MODERN SPECIES 23 MGP_PahariEiJ_G0031424 Bmp15 (MGP_PahariEiJ_G0031425) #20 Shroom4 (MGP_PahariEiJ_G0031426) #21 Dgkk (MGP_PahariEiJ_G0031427) #22 Ccnb3 (MGP_PahariEiJ_G0031428) Akap4 (MGP_PahariEiJ_G0031429) #23 Clcn5 (MGP_PahariEiJ_G0031430) #24 Usp27x (MGP_PahariEiJ_G0031431) Ppp1r3f (MGP_PahariEiJ_G0031432) #26 Foxp3 (MGP_PahariEiJ_G0031433) #27 Ccdc22 (MGP_PahariEiJ_G0031434) #28 Cacna1f (MGP_PahariEiJ_G0031435) #29 Syp (MGP_PahariEiJ_G0031436) #30 Prickle3 (MGP_PahariEiJ_G0031437) #31 MGP_PahariEiJ_G0031439 #32 MGP_PahariEiJ_G0031438 #32 Magix (MGP_PahariEiJ_G0031440) #33 Gpkow (MGP_PahariEiJ_G0031441) #34 Wdr45 (MGP_PahariEiJ_G0031442) #35 Rat MODERN SPECIES 46 RGD1565862 (ENSRNOG00000068201) ENSRNOG00000069398 ENSRNOG00000063942 Mycs (ENSRNOG00000003085) LOC302576 (ENSRNOG00000066885) LOC120099275 (ENSRNOG00000030417) ENSRNOG00000067767 Smptb (ENSRNOG00000066859) Smptb (ENSRNOG00000028033) Ezhip (ENSRNOG00000039305) Nudt11 (ENSRNOG00000046053) Bmp15 (ENSRNOG00000002984) #20 AABR07037243.1 (ENSRNOG00000002975) Shroom4 (ENSRNOG00000002959) #21 Cpsf4-ps1 (ENSRNOG00000062241) Dgkk (ENSRNOG00000039323) #22 Ccnb3 (ENSRNOG00000002951) Akap4 (ENSRNOG00000002921) #23 Clcn5 (ENSRNOG00000002862) #24 Usp27x (ENSRNOG00000002844) AABR07037203.1 (ENSRNOG00000028611) ENSRNOG00000065488 ENSRNOG00000066758 Ppp1r3f (ENSRNOG00000068767) #26 Foxp3 (ENSRNOG00000011702) #27 Ccdc22 (ENSRNOG00000010846) #28 Cacna1f (ENSRNOG00000010348) #29 Syp (ENSRNOG00000059720) #30 Prickle3 (ENSRNOG00000022417) #31 Plp2 (ENSRNOG00000039496) #32 Magix (ENSRNOG00000010092) #33 Upper Galilee mountains blind mole rat MODERN SPECIES 508 ENSNGAG00000022429 #22 Lesser Egyptian jerboa MODERN SPECIES 182 Maged2 (ENSJJAG00000012160) ENSJJAG00000013055 Pfkfb1 (ENSJJAG00000019218) Apex2 (ENSJJAG00000019611) Alas2 (ENSJJAG00000020431) ENSJJAG00000020716 Mageh1 (ENSJJAG00000012620) Rragb (ENSJJAG00000021386) Ubqln2 (ENSJJAG00000012630) Nbdy (ENSJJAG00000012634) ENSJJAG00000012653 ENSJJAG00000022137 ENSJJAG00000000063 ENSJJAG00000012659 Shroom4 (ENSJJAG00000001572) #21 Dgkk (ENSJJAG00000011426) #22 Akap4 (ENSJJAG00000012716) #23 Clcn5 (ENSJJAG00000015570) #24 Usp27x (ENSJJAG00000017064) Ppp1r3f (ENSJJAG00000018210) #26 Foxp3 (ENSJJAG00000018608) #27 Ccdc22 (ENSJJAG00000022101) #28 ENSJJAG00000001778 #29 Syp (ENSJJAG00000003428) #30 Prickle3 (ENSJJAG00000005522) #31 ENSJJAG00000011687 #32 Magix (ENSJJAG00000013085) #33 Gpkow (ENSJJAG00000013397) #34 Wdr45 (ENSJJAG00000014284) #35 Praf2 (ENSJJAG00000020655) #36 Ccdc120 (ENSJJAG00000020809) #37 Lagomorpha ANCESTRAL SPECIES 303 ENSGT00940000162389 ENSGT00940000162070 #17 ENSGT00940000163245 ENSGT00940000160559 ENSGT00390000008621 ENSGT00940000162262 #22 ENSGT00940000160459 Rabbit MODERN SPECIES 481 ENSOCUG00000036051 ENSOCUG00000034510 ENSOCUG00000016686 MAGED1 (ENSOCUG00000001479) #17 ENSOCUG00000030405 GSPT2 (ENSOCUG00000014736) ENSOCUG00000030819 ENSOCUG00000036467 NUDT11 (ENSOCUG00000024756) ENSOCUG00000026060 ENSOCUG00000030291 BMP15 (ENSOCUG00000001641) #20 ENSOCUG00000032704 SHROOM4 (ENSOCUG00000014342) #21 ENSOCUG00000034516 DGKK (ENSOCUG00000010427) #22 ENSOCUG00000010413 Tree shrew MODERN SPECIES 5190 DGKK (ENSTBEG00000007803) #22