Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000157847	ENSGT00940000156319	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00510000049526	ENSGT00940000162389	ENSGT00940000162070 #18	ENSGT00940000160559 #19	ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT01090000262464	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154.k	ENSGT00940000155657
Hystricomorpha_a	ANCESTRAL SPECIES	56													ENSGT00940000160559 #19	ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154.k	ENSGT00940000155657	ENSGT00390000008631.b
Guinea pig	MODERN SPECIES	158										GSPT2 (ENSCPOG00000007083) #16	ENSCPOG00000032273 #17	ENSCPOG00000003936 #18	ENSCPOG00000025043 #19	BMP15 (ENSCPOG00000005516) #20	SHROOM4 (ENSCPOG00000004777) #21	DGKK (ENSCPOG00000000486) #22	ENSCPOG00000038647 #23	AKAP4 (ENSCPOG00000008990) #24
Hystricomorpha_b	ANCESTRAL SPECIES	81														ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154.k	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b
Degu	MODERN SPECIES	304													BMP15 (ENSODEG00000000854) #20	ENSODEG00000000886	ENSODEG00000001005 #21	DGKK (ENSODEG00000001078) #22	AKAP4 (ENSODEG00000001223) #24	ENSODEG00000018669	ENSODEG00000001449	CLCN5 (ENSODEG00000001495)	ENSODEG00000001517	USP27X (ENSODEG00000001537)	ENSODEG00000018712	ENSODEG00000018701	ENSODEG00000018700	PPP1R3F (ENSODEG00000001563)	FOXP3 (ENSODEG00000001628)	CCDC22 (ENSODEG00000001642)	ENSODEG00000001692	SYP (ENSODEG00000001808)	PRICKLE3 (ENSODEG00000001845)
Long-tailed chinchilla	MODERN SPECIES	250											MAGED1 (ENSCLAG00000002620) #18	ENSCLAG00000004437	ENSCLAG00000004109	ENSCLAG00000003915 #20	ENSCLAG00000003634 #21	DGKK (ENSCLAG00000003053) #22	AKAP4 (ENSCLAG00000010688) #24	CLCN5 (ENSCLAG00000002896)	ENSCLAG00000002546	PPP1R3F (ENSCLAG00000002068)	FOXP3 (ENSCLAG00000005172)	CCDC22 (ENSCLAG00000003978)	CACNA1F (ENSCLAG00000002756)	SYP (ENSCLAG00000004119)	PRICKLE3 (ENSCLAG00000003916)	PLP2 (ENSCLAG00000002630)	MAGIX (ENSCLAG00000002281)	ENSCLAG00000002220	WDR45 (ENSCLAG00000005420)	PRAF2 (ENSCLAG00000004889)	CCDC120 (ENSCLAG00000003931)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000042632	ENSHGLG00000000112 #18	ENSHGLG00000001568 #16	ENSHGLG00000001763	ENSHGLG00000019797	ENSHGLG00000001529	ENSHGLG00000001504 #19	ENSHGLG00000048545	ENSHGLG00000046118 #19	ENSHGLG00000004390 #20	ENSHGLG00000048631	ENSHGLG00000003542	SHROOM4 (ENSHGLG00000003286) #21	ENSHGLG00000038624	ENSHGLG00000003106	ENSHGLG00000002872 #22	ENSHGLG00000002751 #23	ENSHGLG00000002579	ENSHGLG00000002181	ENSHGLG00000002863	ENSHGLG00000035843	ENSHGLG00000046679	ENSHGLG00000001046	ENSHGLG00000000969	UXT (ENSHGLG00000000945)	ELK1 (ENSHGLG00000000926)	CFP (ENSHGLG00000000905)	TIMP1 (ENSHGLG00000000794)	SYN1 (ENSHGLG00000000779)	ENSHGLG00000000754	ENSHGLG00000043935