Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00980000198762	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00510000049526	ENSGT00940000162070 #18	ENSGT00940000162389	ENSGT00940000163245 #16	ENSGT00940000160559 #19	ENSGT00390000008621	ENSGT01040000240679	ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000157847	ENSGT00940000156319	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00510000049526	ENSGT00940000162389	ENSGT00940000162070 #18	ENSGT00940000160559 #19	ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT01090000262464	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154.k	ENSGT00940000155657
Hystricomorpha_a	ANCESTRAL SPECIES	56													ENSGT00940000160559 #19	ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154.k	ENSGT00940000155657	ENSGT00390000008631.b
Guinea pig	MODERN SPECIES	158										GSPT2 (ENSCPOG00000007083) #16	ENSCPOG00000032273 #17	ENSCPOG00000003936 #18	ENSCPOG00000025043 #19	BMP15 (ENSCPOG00000005516) #20	SHROOM4 (ENSCPOG00000004777) #21	DGKK (ENSCPOG00000000486) #22	ENSCPOG00000038647 #23	AKAP4 (ENSCPOG00000008990) #24
Hystricomorpha_b	ANCESTRAL SPECIES	81														ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154.k	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b
Degu	MODERN SPECIES	304													BMP15 (ENSODEG00000000854) #20	ENSODEG00000000886	ENSODEG00000001005 #21	DGKK (ENSODEG00000001078) #22	AKAP4 (ENSODEG00000001223) #24	ENSODEG00000018669	ENSODEG00000001449	CLCN5 (ENSODEG00000001495)	ENSODEG00000001517	USP27X (ENSODEG00000001537)	ENSODEG00000018712	ENSODEG00000018701	ENSODEG00000018700	PPP1R3F (ENSODEG00000001563)	FOXP3 (ENSODEG00000001628)	CCDC22 (ENSODEG00000001642)	ENSODEG00000001692	SYP (ENSODEG00000001808)	PRICKLE3 (ENSODEG00000001845)
Long-tailed chinchilla	MODERN SPECIES	250											MAGED1 (ENSCLAG00000002620) #18	ENSCLAG00000004437	ENSCLAG00000004109	ENSCLAG00000003915 #20	ENSCLAG00000003634 #21	DGKK (ENSCLAG00000003053) #22	AKAP4 (ENSCLAG00000010688) #24	CLCN5 (ENSCLAG00000002896)	ENSCLAG00000002546	PPP1R3F (ENSCLAG00000002068)	FOXP3 (ENSCLAG00000005172)	CCDC22 (ENSCLAG00000003978)	CACNA1F (ENSCLAG00000002756)	SYP (ENSCLAG00000004119)	PRICKLE3 (ENSCLAG00000003916)	PLP2 (ENSCLAG00000002630)	MAGIX (ENSCLAG00000002281)	ENSCLAG00000002220	WDR45 (ENSCLAG00000005420)	PRAF2 (ENSCLAG00000004889)	CCDC120 (ENSCLAG00000003931)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000042632	ENSHGLG00000000112 #18	ENSHGLG00000001568 #16	ENSHGLG00000001763	ENSHGLG00000019797	ENSHGLG00000001529	ENSHGLG00000001504 #19	ENSHGLG00000048545	ENSHGLG00000046118 #19	ENSHGLG00000004390 #20	ENSHGLG00000048631	ENSHGLG00000003542	SHROOM4 (ENSHGLG00000003286) #21	ENSHGLG00000038624	ENSHGLG00000003106	ENSHGLG00000002872 #22	ENSHGLG00000002751 #23	ENSHGLG00000002579	ENSHGLG00000002181	ENSHGLG00000002863	ENSHGLG00000035843	ENSHGLG00000046679	ENSHGLG00000001046	ENSHGLG00000000969	UXT (ENSHGLG00000000945)	ELK1 (ENSHGLG00000000926)	CFP (ENSHGLG00000000905)	TIMP1 (ENSHGLG00000000794)	SYN1 (ENSHGLG00000000779)	ENSHGLG00000000754	ENSHGLG00000043935
Sciuridae	ANCESTRAL SPECIES	28	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00980000198762	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00940000162070 #18	ENSGT00940000162389	ENSGT00940000163245 #16	ENSGT00940000160559 #19	ENSGT00390000008621	ENSGT01040000240679	ENSGT00940000160940 #20	ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b
Eurasian red squirrel	MODERN SPECIES	156	TSPYL2 (ENSSVLG00005015733)	GPR173 (ENSSVLG00005015827)	ENSSVLG00005015851	ENSSVLG00005015867	ENSSVLG00005015906	MAGED1 (ENSSVLG00005015981) #18	ENSSVLG00005016087	GSPT2 (ENSSVLG00005016154) #16	ENSSVLG00005016175	ENSSVLG00005016195	ENSSVLG00005016209	NUDT11 (ENSSVLG00005016221) #19	NUDT10 (ENSSVLG00005016353)	BMP15 (ENSSVLG00005016372) #20	SHROOM4 (ENSSVLG00005016405) #21	DGKK (ENSSVLG00005016570) #22	ENSSVLG00005016807 #23	AKAP4 (ENSSVLG00005016895) #24	CLCN5 (ENSSVLG00005017046)	USP27X (ENSSVLG00005017235)	PPP1R3F (ENSSVLG00005017275)	FOXP3 (ENSSVLG00005017363)	CCDC22 (ENSSVLG00005017751)	CACNA1F (ENSSVLG00005017838)	SYP (ENSSVLG00005019132)	PRICKLE3 (ENSSVLG00005019231)	PLP2 (ENSSVLG00005019309)	MAGIX (ENSSVLG00005019436)	GPKOW (ENSSVLG00005019537)	ENSSVLG00005019742	PRAF2 (ENSSVLG00005019896)
Marmotini	ANCESTRAL SPECIES	81															ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b
Marmotini_b	ANCESTRAL SPECIES	120															ENSGT00940000159479 #21	ENSGT00940000162262 #22	ENSGT00940000160459 #23	ENSGT00940000153313.C.a #24	ENSGT00940000153763.a	ENSGT00940000162674	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000162529	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b
Arctic ground squirrel	MODERN SPECIES	341															SHROOM4 (ENSUPAG00010004734) #21	DGKK (ENSUPAG00010004707) #22	CCNB3 (ENSUPAG00010004626) #23	AKAP4 (ENSUPAG00010004604) #24	CLCN5 (ENSUPAG00010004559)	USP27X (ENSUPAG00010004551)	PPP1R3F (ENSUPAG00010004546)	FOXP3 (ENSUPAG00010004085)	CCDC22 (ENSUPAG00010004020)	CACNA1F (ENSUPAG00010003865)	SYP (ENSUPAG00010003851)	PRICKLE3 (ENSUPAG00010003840)	PLP2 (ENSUPAG00010003832)	MAGIX (ENSUPAG00010003732)	GPKOW (ENSUPAG00010003718)	ENSUPAG00010003688	WDR45 (ENSUPAG00010003384)
Squirrel	MODERN SPECIES	321															ENSSTOG00000016561 #21	DGKK (ENSSTOG00000008354) #22	AKAP4 (ENSSTOG00000027547) #24	CLCN5 (ENSSTOG00000013403)	USP27X (ENSSTOG00000023186)	PPP1R3F (ENSSTOG00000004440)	FOXP3 (ENSSTOG00000004416)	CCDC22 (ENSSTOG00000004377)	CACNA1F (ENSSTOG00000023000)	SYP (ENSSTOG00000004361)	PRICKLE3 (ENSSTOG00000014600)	PLP2 (ENSSTOG00000014609)	MAGIX (ENSSTOG00000004371)	GPKOW (ENSSTOG00000014593)	ENSSTOG00000010517	WDR45 (ENSSTOG00000009683)	PRAF2 (ENSSTOG00000009679)
Alpin marmot	MODERN SPECIES	120															SHROOM4 (ENSMMMG00000011031) #21	ENSMMMG00000011066 #22	ENSMMMG00000011074 #23	AKAP4 (ENSMMMG00000011139) #24	CLCN5 (ENSMMMG00000011163)	USP27X (ENSMMMG00000011213)	ENSMMMG00000011217	FOXP3 (ENSMMMG00000011227)	CCDC22 (ENSMMMG00000011289)	CACNA1F (ENSMMMG00000011341)	SYP (ENSMMMG00000011496)	PRICKLE3 (ENSMMMG00000011502)	PLP2 (ENSMMMG00000011522)	MAGIX (ENSMMMG00000011527)	GPKOW (ENSMMMG00000011535)	WDR45 (ENSMMMG00000011555)	ENSMMMG00000011713