Myomorpha ANCESTRAL SPECIES 6 ENSGT00950000182835.c.c ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00950000182925.D.a.b.a.a.a.b ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Muroidea ANCESTRAL SPECIES 30 ENSGT00950000182835.c.c ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00950000182925.D.a.b.a.a.a.b ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Muroidea_A ANCESTRAL SPECIES 7 ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00940000167111 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Cricetidae ANCESTRAL SPECIES 8 ENSGT00530000063540.a ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00940000167111 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000159912 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a ENSGT00940000161062 ENSGT00940000162603 ENSGT00940000163673 ENSGT00390000004891 ENSGT00940000167111 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ENSGT00950000182925.D.a.b.a.a.a.b.a.b.a ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Golden Hamster MODERN SPECIES 799 ENSMAUG00000014381 #18 ENSMAUG00000013990 #19 Bmp15 (ENSMAUG00000013560) #20 ENSMAUG00000007539 #21 Dgkk (ENSMAUG00000012411) #22 Ccnb3 (ENSMAUG00000004259) #23 ENSMAUG00000021928 #24 Clcn5 (ENSMAUG00000008112) #25 Usp27x (ENSMAUG00000002688) #26 Ppp1r3f (ENSMAUG00000009301) #27 Foxp3 (ENSMAUG00000016148) #28 Ccdc22 (ENSMAUG00000019029) #29 Cacna1f (ENSMAUG00000021438) #30 Syp (ENSMAUG00000016225) #31 Prickle3 (ENSMAUG00000014616) #32 ENSMAUG00000019174 #33 Magix (ENSMAUG00000011901) #34 Wdr45 (ENSMAUG00000011036) #35 Ccdc120 (ENSMAUG00000000888) #36 Tfe3 (ENSMAUG00000002865) #37 Chinese hamster chok1gshd MODERN SPECIES 175 ENSCGRG00001018471 ENSCGRG00001000978 ENSCGRG00001023144 Mycs (ENSCGRG00001000792) ENSCGRG00001003982 ENSCGRG00001000208 ENSCGRG00001010729 ENSCGRG00001007007 ENSCGRG00001022547 ENSCGRG00001007687 ENSCGRG00001008851 ENSCGRG00001009060 #19 ENSCGRG00001001286 Bmp15 (ENSCGRG00001012329) #20 Shroom4 (ENSCGRG00001016683) #21 Dgkk (ENSCGRG00001005491) #22 Ccnb3 (ENSCGRG00001016975) #23 Akap4 (ENSCGRG00001022827) #24 ENSCGRG00001000058 Clcn5 (ENSCGRG00001017810) #25 ENSCGRG00001006356 Ppp1r3f (ENSCGRG00001022530) #27 Foxp3 (ENSCGRG00001021426) #28 Ccdc22 (ENSCGRG00001023162) #29 Cacna1f (ENSCGRG00001013804) #30 Syp (ENSCGRG00001016610) #31 Prickle3 (ENSCGRG00001023920) #32 ENSCGRG00001014295 #33 Magix (ENSCGRG00001015068) #34 Gpkow (ENSCGRG00001016210) Wdr45 (ENSCGRG00001012955) #35 Cricetidae_B ANCESTRAL SPECIES 45 ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Northern American deer mouse MODERN SPECIES 475 ENSPEMG00000026118 Mageh1 (ENSPEMG00000003236) Usp51 (ENSPEMG00000022623) ENSPEMG00000027395 ENSPEMG00000024891 Mycs (ENSPEMG00000026712) ENSPEMG00000016072 ENSPEMG00000030562 ENSPEMG00000030440 ENSPEMG00000025360 ENSPEMG00000031215 #19 ENSPEMG00000027174 #19 Bmp15 (ENSPEMG00000026057) #20 Shroom4 (ENSPEMG00000022302) #21 ENSPEMG00000028579 Dgkk (ENSPEMG00000022777) #22 Ccnb3 (ENSPEMG00000022596) #23 Akap4 (ENSPEMG00000023845) #24 Clcn5 (ENSPEMG00000011139) #25 Usp27x (ENSPEMG00000005635) #26 Ppp1r3f (ENSPEMG00000015653) #27 Foxp3 (ENSPEMG00000012847) #28 Ccdc22 (ENSPEMG00000015959) #29 Cacna1f (ENSPEMG00000009739) #30 Syp (ENSPEMG00000007762) #31 Prickle3 (ENSPEMG00000005910) #32 ENSPEMG00000012167 #33 Magix (ENSPEMG00000025490) #34 Gpkow (ENSPEMG00000009966) Wdr45 (ENSPEMG00000015281) #35 Praf2 (ENSPEMG00000029377) Prairie vole MODERN SPECIES 1 Ift74 (ENSMOCG00000002321) Lrrc19 (ENSMOCG00000008422) Tek (ENSMOCG00000017310) Eqtn (ENSMOCG00000018858) Mysm1 (ENSMOCG00000001327) Jun (ENSMOCG00000006483) Fggy (ENSMOCG00000017533) ENSMOCG00000016214 Hook1 (ENSMOCG00000020291) ENSMOCG00000017305 ENSMOCG00000000673 #19 ENSMOCG00000007014 ENSMOCG00000022364 #19 Bmp15 (ENSMOCG00000000837) #20 Shroom4 (ENSMOCG00000014195) #21 Dgkk (ENSMOCG00000019385) #22 Ccnb3 (ENSMOCG00000002143) #23 Akap4 (ENSMOCG00000018265) #24 Clcn5 (ENSMOCG00000015506) #25 ENSMOCG00000013352 Usp27x (ENSMOCG00000006681) #26 Ppp1r3f (ENSMOCG00000002362) #27 Foxp3 (ENSMOCG00000008698) #28 Ccdc22 (ENSMOCG00000012776) #29 Cacna1f (ENSMOCG00000003974) #30 Syp (ENSMOCG00000001534) #31 Prickle3 (ENSMOCG00000022909) #32 ENSMOCG00000013471 #33 Magix (ENSMOCG00000016030) #34 Gpkow (ENSMOCG00000019251) ENSMOCG00000004994 Murinae ANCESTRAL SPECIES 33 ENSGT00730000112586 ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Mus ANCESTRAL SPECIES 9 ENSGT00730000112586 ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Mus_A ANCESTRAL SPECIES 15 ENSGT00730000112586 ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Mus_B ANCESTRAL SPECIES 14 ENSGT00940000158432.bb.b.a ENSGT00940000163246 ENSGT00730000112586 ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b Mouse MODERN SPECIES 37 Btbd35f10 (ENSMUSG00000095716) Btbd35f16 (ENSMUSG00000101381) Btbd35f3 (ENSMUSG00000078218) Btbd35f28 (ENSMUSG00000094307) Btbd35f20 (ENSMUSG00000094596) Btbd35f17 (ENSMUSG00000094273) Btbd35f4 (ENSMUSG00000078213) Btbd35f27 (ENSMUSG00000094860) Mycs (ENSMUSG00000044597) Btbd35f7 (ENSMUSG00000095814) Nudt11 (ENSMUSG00000073295) #19 Ezhip (ENSMUSG00000073294) Nudt10 (ENSMUSG00000073293) #19 Bmp15 (ENSMUSG00000023279) #20 Shroom4 (ENSMUSG00000068270) #21 Dgkk (ENSMUSG00000062393) #22 Ccnb3 (ENSMUSG00000051592) #23 Akap4 (ENSMUSG00000050089) #24 Clcn5 (ENSMUSG00000004317) #25 Usp27x (ENSMUSG00000046269) #26 Ppp1r3f (ENSMUSG00000039556) #27 Foxp3 (ENSMUSG00000039521) #28 Ccdc22 (ENSMUSG00000031143) #29 Cacna1f (ENSMUSG00000031142) #30 Syp (ENSMUSG00000031144) #31 Prickle3 (ENSMUSG00000031145) #32 Plp2 (ENSMUSG00000031146) #33 Magix (ENSMUSG00000031147) #34 Gpkow (ENSMUSG00000031148) Wdr45 (ENSMUSG00000039382) #35 Gm45208 (ENSMUSG00000109493) Mus_C ANCESTRAL SPECIES 27 ENSGT00940000158432.bb.b.a ENSGT00940000163246 ENSGT00730000112586 ENSGT00940000160559 #19 ENSGT00940000160940 #20 ENSGT00940000159479 #21 ENSGT00940000162262 #22 ENSGT00940000160459 #23 ENSGT00940000153313.C.a #24 ENSGT00940000153763.a #25 ENSGT00940000162674 #26 ENSGT00390000013859 #27 ENSGT00940000161807 #28 ENSGT00390000003809 #29 ENSGT00940000159855 #30 ENSGT01030000234637.b.c #31 ENSGT00940000153629.a.b #32 ENSGT00940000158528 #33 ENSGT00940000162529 #34 ENSGT00390000015154 ENSGT00940000155657 #35 ENSGT00390000008631.b spretus MODERN SPECIES 19 Mycs (MGP_SPRETEiJ_G0034022) Ezhip (MGP_SPRETEiJ_G0034023) MGP_SPRETEiJ_G0034024 #19 Bmp15 (MGP_SPRETEiJ_G0034025) #20 Shroom4 (MGP_SPRETEiJ_G0034026) #21 Dgkk (MGP_SPRETEiJ_G0034027) #22 Ccnb3 (MGP_SPRETEiJ_G0034028) #23 Akap4 (MGP_SPRETEiJ_G0034029) #24 Clcn5 (MGP_SPRETEiJ_G0034030) #25 Usp27x (MGP_SPRETEiJ_G0034031) #26 Ppp1r3f (MGP_SPRETEiJ_G0034032) #27 Foxp3 (MGP_SPRETEiJ_G0034033) #28 Ccdc22 (MGP_SPRETEiJ_G0034034) #29 Cacna1f (MGP_SPRETEiJ_G0034035) #30 Syp (MGP_SPRETEiJ_G0034036) #31 Prickle3 (MGP_SPRETEiJ_G0034037) #32 MGP_SPRETEiJ_G0034039 #33 MGP_SPRETEiJ_G0034038 #33 Magix (MGP_SPRETEiJ_G0034040) #34 MGP_SPRETEiJ_G0034041 Wdr45 (MGP_SPRETEiJ_G0034042) #35 Steppe mouse MODERN SPECIES 2440 ENSMSIG00000031424 #22 Ccnb3 (ENSMSIG00000031429) #23 Akap4 (ENSMSIG00000031432) #24 Clcn5 (ENSMSIG00000031435) #25 Ryukyu mouse MODERN SPECIES 19 MGP_CAROLIEiJ_G0032875 #19 Ezhip (MGP_CAROLIEiJ_G0032876) Bmp15 (MGP_CAROLIEiJ_G0032877) #20 Shroom4 (MGP_CAROLIEiJ_G0032878) #21 Dgkk (MGP_CAROLIEiJ_G0032879) #22 Ccnb3 (MGP_CAROLIEiJ_G0032880) #23 Akap4 (MGP_CAROLIEiJ_G0032881) #24 Clcn5 (MGP_CAROLIEiJ_G0032882) #25 Usp27x (MGP_CAROLIEiJ_G0032883) #26 Ppp1r3f (MGP_CAROLIEiJ_G0032884) #27 Foxp3 (MGP_CAROLIEiJ_G0032885) #28 Ccdc22 (MGP_CAROLIEiJ_G0032886) #29 Cacna1f (MGP_CAROLIEiJ_G0032887) #30 Syp (MGP_CAROLIEiJ_G0032888) #31 Prickle3 (MGP_CAROLIEiJ_G0032889) #32 MGP_CAROLIEiJ_G0032891 #33 MGP_CAROLIEiJ_G0032890 #33 Magix (MGP_CAROLIEiJ_G0032892) #34 Gpkow (MGP_CAROLIEiJ_G0032893) Wdr45 (MGP_CAROLIEiJ_G0032894) #35 Shrew mouse MODERN SPECIES 23 MGP_PahariEiJ_G0031424 #19 Bmp15 (MGP_PahariEiJ_G0031425) #20 Shroom4 (MGP_PahariEiJ_G0031426) #21 Dgkk (MGP_PahariEiJ_G0031427) #22 Ccnb3 (MGP_PahariEiJ_G0031428) #23 Akap4 (MGP_PahariEiJ_G0031429) #24 Clcn5 (MGP_PahariEiJ_G0031430) #25 Usp27x (MGP_PahariEiJ_G0031431) #26 Ppp1r3f (MGP_PahariEiJ_G0031432) #27 Foxp3 (MGP_PahariEiJ_G0031433) #28 Ccdc22 (MGP_PahariEiJ_G0031434) #29 Cacna1f (MGP_PahariEiJ_G0031435) #30 Syp (MGP_PahariEiJ_G0031436) #31 Prickle3 (MGP_PahariEiJ_G0031437) #32 MGP_PahariEiJ_G0031439 #33 MGP_PahariEiJ_G0031438 #33 Magix (MGP_PahariEiJ_G0031440) #34 Gpkow (MGP_PahariEiJ_G0031441) Wdr45 (MGP_PahariEiJ_G0031442) #35 Rat MODERN SPECIES 46 RGD1565862 (ENSRNOG00000068201) ENSRNOG00000069398 ENSRNOG00000063942 ##18 Mycs (ENSRNOG00000003085) LOC302576 (ENSRNOG00000066885) LOC120099275 (ENSRNOG00000030417) ENSRNOG00000067767 Smptb (ENSRNOG00000066859) Smptb (ENSRNOG00000028033) Ezhip (ENSRNOG00000039305) Nudt11 (ENSRNOG00000046053) #19 Bmp15 (ENSRNOG00000002984) #20 AABR07037243.1 (ENSRNOG00000002975) Shroom4 (ENSRNOG00000002959) #21 Cpsf4-ps1 (ENSRNOG00000062241) Dgkk (ENSRNOG00000039323) #22 Ccnb3 (ENSRNOG00000002951) #23 Akap4 (ENSRNOG00000002921) #24 Clcn5 (ENSRNOG00000002862) #25 Usp27x (ENSRNOG00000002844) #26 AABR07037203.1 (ENSRNOG00000028611) ENSRNOG00000065488 ENSRNOG00000066758 Ppp1r3f (ENSRNOG00000068767) #27 Foxp3 (ENSRNOG00000011702) #28 Ccdc22 (ENSRNOG00000010846) #29 Cacna1f (ENSRNOG00000010348) #30 Syp (ENSRNOG00000059720) #31 Prickle3 (ENSRNOG00000022417) #32 Plp2 (ENSRNOG00000039496) #33 Magix (ENSRNOG00000010092) #34 Upper Galilee mountains blind mole rat MODERN SPECIES 508 ENSNGAG00000022429 #22 Lesser Egyptian jerboa MODERN SPECIES 182 Maged2 (ENSJJAG00000012160) ENSJJAG00000013055 Pfkfb1 (ENSJJAG00000019218) Apex2 (ENSJJAG00000019611) Alas2 (ENSJJAG00000020431) ENSJJAG00000020716 Mageh1 (ENSJJAG00000012620) Rragb (ENSJJAG00000021386) Ubqln2 (ENSJJAG00000012630) Nbdy (ENSJJAG00000012634) ENSJJAG00000012653 ENSJJAG00000022137 ENSJJAG00000000063 #19 ENSJJAG00000012659 Shroom4 (ENSJJAG00000001572) #21 Dgkk (ENSJJAG00000011426) #22 Akap4 (ENSJJAG00000012716) #24 Clcn5 (ENSJJAG00000015570) #25 Usp27x (ENSJJAG00000017064) #26 Ppp1r3f (ENSJJAG00000018210) #27 Foxp3 (ENSJJAG00000018608) #28 Ccdc22 (ENSJJAG00000022101) #29 ENSJJAG00000001778 #30 Syp (ENSJJAG00000003428) #31 Prickle3 (ENSJJAG00000005522) #32 ENSJJAG00000011687 #33 Magix (ENSJJAG00000013085) #34 Gpkow (ENSJJAG00000013397) Wdr45 (ENSJJAG00000014284) #35 Praf2 (ENSJJAG00000020655) Ccdc120 (ENSJJAG00000020809) #36