Pecora	ANCESTRAL SPECIES	14	ENSGT00940000153474.b.d.g.a.b.a	ENSGT00940000153520.d.b.a.a.a.b	ENSGT00940000153474.b.d.g.b.a	ENSGT00940000156298.m.b	ENSGT00940000153474.b.d.g.b.b.b.a.a	ENSGT00940000161517.D	ENSGT00940000161054	ENSGT01030000234531.A.b.b.a	ENSGT00940000154179.`b #13	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.d #16	ENSGT00940000153120.k.a.b.b.x #18	ENSGT00940000153307.d.j #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821 #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35
Percora_a	ANCESTRAL SPECIES	17	ENSGT00940000156298.m.b	ENSGT00940000153474.b.d.g.a.b.a	ENSGT00940000161054	ENSGT01030000234531.A.b.b.a	ENSGT00940000154179.`b #13	ENSGT00940000153120.k.a.a.c.b #17	ENSGT00940000153474.b.d.h	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.d #16	ENSGT00940000153120.k.a.b.b.x #18	ENSGT00940000162558	ENSGT01060000249414 #19	ENSGT00940000153307.d.j #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821 #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000153474.b.d.g.b.b.b.a.a.c	ENSGT00940000153520.d.b.a.a.a.b.e.b	ENSGT00940000153474.b.d.g.b.a	ENSGT00940000154179.`b #13	ENSGT00940000153120.k.a.a.c.a #15	ENSGT00940000153474.b.d.h	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.d #16	ENSGT00940000153120.k.a.a.c.b #17	ENSGT00940000153120.k.a.b.b.x #18	ENSGT00940000162558	ENSGT01060000249414 #19	ENSGT00940000153307.d.j #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821 #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35
Caprinae	ANCESTRAL SPECIES	39	ENSGT00940000153474.b.d.g.b.a	ENSGT00940000156298.m.b	ENSGT00940000154179.`b.k.a.b #9	ENSGT00940000154179.`b.k.b #11	ENSGT00940000154179.`b.l #13	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.c.a.a #14	ENSGT00940000153120.k.a.a.c.a.b #15	ENSGT00940000153120.k.a.a.d #16	ENSGT00940000153120.k.a.a.c.b #17	ENSGT00940000153120.k.a.b.b.x #18	ENSGT01060000249414 #19	ENSGT00940000153307.d.j.c #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821 #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35	ENSGT00610000086153 #36
Rambouillet Sheep	MODERN SPECIES	8	ENSOARG00020025491 #7	ENSOARG00020025495 #8	ENSOARG00020025497 #9	ENSOARG00020025504 #10	ENSOARG00020025508 #11	ENSOARG00020025510 #12	ENSOARG00020025514 #13	ENSOARG00020025518 #14	ENSOARG00020025521 #15	ENSOARG00020025526 #16	ENSOARG00020025529 #17	ENSOARG00020025532 #18	ENSOARG00020025538 #19	ENSOARG00020025540 #20	VPREB3 (ENSOARG00020025544) #21	C22orf15 (ENSOARG00020025550) #22	CHCHD10 (ENSOARG00020025559) #23	SMARCB1 (ENSOARG00020025574) #24	DERL3 (ENSOARG00020025584) #25	SLC2A11 (ENSOARG00020025594) #26	MIF (ENSOARG00020025606) #27	GSTT4 (ENSOARG00020025609) #28	ENSOARG00020025614 #29	ENSOARG00020025619 #30	ENSOARG00020025623 #31	CABIN1 (ENSOARG00020025629) #32	SUSD2 (ENSOARG00020025636) #33	GGT5 (ENSOARG00020025641) #34	ENSOARG00020025649 #35	SNRPD3 (ENSOARG00020025667) #36	GUCD1 (ENSOARG00020025677) #37
Bovinae	ANCESTRAL SPECIES	13	ENSGT00940000161054.u.a	ENSGT00940000161054.v.a	ENSGT01030000234531.A.b.b.a.i.a.b	ENSGT00940000153474.b.d.h	ENSGT00940000154179.`b.m.a #13	ENSGT00940000154179.`b.m.b #13	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.d.a #16	ENSGT00940000153120.k.a.a.c.b #17	ENSGT00940000153120.k.a.b.b.x #18	ENSGT00940000153307.d.j.b #20	ENSGT00940000163371.b.b	ENSGT00940000153307.d.j.a #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821.p.a #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35
Bos	ANCESTRAL SPECIES	14	ENSGT00940000153474.b.d.g.a.a	ENSGT00940000156298.m.a.b.a	ENSGT00940000153474.b.d.g.b.b.b.a.b	ENSGT00940000153474.b.d.g.a.b.a	ENSGT00940000161054.u.a	ENSGT00940000161054.v.a	ENSGT01030000234531.A.b.b.a.i.a.b	ENSGT00940000153474.b.d.h	ENSGT00940000154179.`b.m.a #13	ENSGT00940000154179.`b.m.b #13	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.d.a #16	ENSGT00940000153307.d.j.a #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821.p.a #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000153474.b.d.g.a.b.a.c	ENSGT00940000161054.u.a	ENSGT00940000161054.v.a	ENSGT01030000234531.A.b.b.a.i.a.b	ENSGT00940000154179.`b.m.a #13	ENSGT00940000154179.`b.m.b #13	ENSGT00940000153120.k.a.b.b.w ##18	ENSGT00940000153120.k.a.a.d.a #16	ENSGT00940000153120.k.a.a.c.b #17	ENSGT00940000153120.k.a.b.b.x #18	ENSGT01060000249414 #19	ENSGT00940000163371.b.b	ENSGT00940000153307.d.j.a #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.a.a #30	ENSGT00940000156821.p.a #31	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35
Hybrid Bos Indicus	MODERN SPECIES	8	ENSBIXG00005009776	ENSBIXG00005009816	ENSBIXG00005009844	ENSBIXG00005009853	ZNF280B (ENSBIXG00005000646)	ENSBIXG00005009876 #13	ENSBIXG00005009891	ENSBIXG00005009900 #16	ENSBIXG00005009920 ##18	ENSBIXG00005010468 #18	ENSBIXG00005010545 #20	ENSBIXG00005010553 #20	ENSBIXG00005010562 #20	ZNF70 (ENSBIXG00005010575)	VPREB3 (ENSBIXG00005000718) #21	ENSBIXG00005010584 #22	ENSBIXG00005010608 #23	MMP11 (ENSBIXG00005010625)	SMARCB1 (ENSBIXG00005010674) #24	ENSBIXG00005000635 #25	SLC2A11 (ENSBIXG00005010882) #26	MIF (ENSBIXG00005000596) #27	ENSBIXG00005011059	ENSBIXG00005000579 #28	ENSBIXG00005011095 #29	ENSBIXG00005011105 #30	ENSBIXG00005011137 #31	CABIN1 (ENSBIXG00005014491) #32	SUSD2 (ENSBIXG00005014748) #33	ENSBIXG00005002086 #34	ENSBIXG00005014809 #35
Cow	MODERN SPECIES	8	ENSBTAG00000031160	ZNF280B (ENSBTAG00000001005)	ZNF280A (ENSBTAG00000046083)	PRAME (ENSBTAG00000033890)	ENSBTAG00000049563 #13	ENSBTAG00000054090 #13	ENSBTAG00000055016 ##18	ENSBTAG00000051734 #16	ENSBTAG00000054009 #17	ENSBTAG00000047121 #18	ENSBTAG00000048832 #19	ENSBTAG00000017305	ENSBTAG00000050062 #20	ZNF70 (ENSBTAG00000053568)	VPREB3 (ENSBTAG00000051134) #21	C17H22orf15 (ENSBTAG00000022030) #22	CHCHD10 (ENSBTAG00000022032) #23	MMP11 (ENSBTAG00000006108)	SMARCB1 (ENSBTAG00000009988) #24	DERL3 (ENSBTAG00000022028) #25	SLC2A11 (ENSBTAG00000018647) #26	MIF (ENSBTAG00000007375) #27	ENSBTAG00000053662	GSTT4 (ENSBTAG00000000170) #28	GSTT1 (ENSBTAG00000040298) #29	GSTT2 (ENSBTAG00000008587) #30	DDT (ENSBTAG00000022027) #31	CABIN1 (ENSBTAG00000024708) #32	SUSD2 (ENSBTAG00000006730) #33	GGT5 (ENSBTAG00000006608) #34	GGT1 (ENSBTAG00000046900) #35
Bos_a	ANCESTRAL SPECIES	56												ENSGT00940000153120.k.a.a.d.a #16	ENSGT00940000153307.d.j.a #20	ENSGT00940000163200	ENSGT00940000161808 #21	ENSGT00390000015147 #22	ENSGT00940000161345 #23	ENSGT00940000156340.a	ENSGT00440000038585 #24	ENSGT00530000063156.a.a.b #25	ENSGT00940000161061.b #26	ENSGT00940000155608 #27	ENSGT00940000163205	ENSGT00940000161301 #28	ENSGT00940000156366.a.b #29	ENSGT00940000156366.b ##30	ENSGT00390000008529 #32	ENSGT00730000110943.B #33	ENSGT00940000155794 #34	ENSGT00940000154601 #35	ENSGT00610000086153 #36
Wild yak	MODERN SPECIES	1302														ZNF70 (ENSBMUG00000022913)	VPREB3 (ENSBMUG00000022906) #21	ENSBMUG00000022898 #22	ENSBMUG00000022893 #23	MMP11 (ENSBMUG00000022887)	SMARCB1 (ENSBMUG00000022876) #24	ENSBMUG00000022867 #25	SLC2A11 (ENSBMUG00000022861) #26	ENSBMUG00000022807	GSTT4 (ENSBMUG00000022761) #28	ENSBMUG00000022744 #29	ENSBMUG00000022730 ##30
Domestic yak	MODERN SPECIES	7	ENSBGRG00000020379	ENSBGRG00000020415	ENSBGRG00000020428	ENSBGRG00000020460	ENSBGRG00000020481 #13	ENSBGRG00000020488 #13	ENSBGRG00000020500 ##18	ENSBGRG00000020543 #16	ENSBGRG00000020588 #16	ENSBGRG00000020609 #20	ENSBGRG00000020645 #20	ENSBGRG00000020704 #23	ENSBGRG00000020789	ZNF70 (ENSBGRG00000020802)	VPREB3 (ENSBGRG00000020832) #21	ENSBGRG00000020883 #22	MMP11 (ENSBGRG00000021045)	SMARCB1 (ENSBGRG00000021165) #24	DERL3 (ENSBGRG00000021363) #25	SLC2A11 (ENSBGRG00000021422) #26	ENSBGRG00000021751 #27	ENSBGRG00000021813	GSTT4 (ENSBGRG00000021899) #28	ENSBGRG00000021955 #29	ENSBGRG00000022014 ##30	CABIN1 (ENSBGRG00000022119) #32	SUSD2 (ENSBGRG00000022414) #33	GGT5 (ENSBGRG00000022692) #34	ENSBGRG00000022972 #35	ENSBGRG00000023129 #36	GUCD1 (ENSBGRG00000023185) #37
Yarkand deer	MODERN SPECIES	28	SLC5A1 (ENSCHYG00000001245)	SLC5A4 (ENSCHYG00000001217)	ENSCHYG00000001199	ENSCHYG00000001174	ENSCHYG00000001156	ENSCHYG00000001146	ENSCHYG00000001131	ENSCHYG00000001118	ZNF280B (ENSCHYG00000001098)	PRAME (ENSCHYG00000001038)	ENSCHYG00000001020 #13	ENSCHYG00000001003 #19	ENSCHYG00000000997 #20	ZNF70 (ENSCHYG00000000990)	VPREB3 (ENSCHYG00000000976) #21	ENSCHYG00000000963 #22	ENSCHYG00000000958 #23	MMP11 (ENSCHYG00000000933)	SMARCB1 (ENSCHYG00000000842) #24	DERL3 (ENSCHYG00000000805) #25	SLC2A11 (ENSCHYG00000000621) #26	MIF (ENSCHYG00000000570) #27	GSTT4 (ENSCHYG00000000508) #28	ENSCHYG00000000488 #29	ENSCHYG00000000465 #30	ENSCHYG00000000437 #31	CABIN1 (ENSCHYG00000000277) #32	SUSD2 (ENSCHYG00000000205) #33	GGT5 (ENSCHYG00000000188) #34	ENSCHYG00000013902 #35	SNRPD3 (ENSCHYG00000013709) #36