Bovidae	ANCESTRAL SPECIES	4	ENSGT00390000007074 #10	ENSGT00940000153837.a.b #12	ENSGT00940000154509.y.b.a.a.b	ENSGT00390000009456 #13	ENSGT00390000018876 #14	ENSGT00940000156370	ENSGT00420000029847	ENSGT00420000029858 #15	ENSGT00950000186085	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00940000157868.c #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00610000086095 #29	ENSGT00940000161773 #31	ENSGT00950000183108.b.a.a #32	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b #33	ENSGT00940000162377 #34	ENSGT00940000163278 #35	ENSGT00940000162746 #36	ENSGT00940000156704 #37	ENSGT00950000183102.A.b.b
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000162291	ENSGT00390000007074 #10	ENSGT00940000153837.a.b #12	ENSGT00390000009456 #13	ENSGT00390000018876 #14	ENSGT00940000156370	ENSGT00420000029847	ENSGT00420000029858 #15	ENSGT00950000186085	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00940000157868.c #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00610000086095 #29	ENSGT00940000161773 #31	ENSGT00950000183108.b.a.a #32	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b #33	ENSGT00940000162377 #34	ENSGT00940000163278 #35	ENSGT00940000162746 #36	ENSGT00940000156704 #37	ENSGT00950000183102.A.b.b
Goat	MODERN SPECIES	9	CEBPA (ENSCHIG00000011587) #7	SLC7A10 (ENSCHIG00000023717) #8	LRP3 (ENSCHIG00000012481) #9	GPATCH1 (ENSCHIG00000019626) #10	ENSCHIG00000023853 #11	RHPN2 (ENSCHIG00000010158) #12	FAAP24 (ENSCHIG00000021119) #13	CEP89 (ENSCHIG00000014142) #14	NUDT19 (ENSCHIG00000021537) #15	RGS9BP (ENSCHIG00000007331) #16	ANKRD27 (ENSCHIG00000017376) #17	PDCD5 (ENSCHIG00000006484) #18	DPY19L3 (ENSCHIG00000021524) #19	ZNF507 (ENSCHIG00000026183) #20	ENSCHIG00000020296 #21	TSHZ3 (ENSCHIG00000015004) #22	ZNF536 (ENSCHIG00000015719) #23	URI1 (ENSCHIG00000011466) #24	CCNE1 (ENSCHIG00000024742) #25	C19orf12 (ENSCHIG00000023412) #26	PLEKHF1 (ENSCHIG00000005768) #27	POP4 (ENSCHIG00000016743) #28	HYDIN (ENSCHIG00000026411) #29	ENSCHIG00000013255 #30	CMTR2 (ENSCHIG00000008526) #31	CALB2 (ENSCHIG00000019148) #32	TLE7 (ENSCHIG00000016108) #33	ENSCHIG00000016867 #34	ZNF19 (ENSCHIG00000015453) #35	CHST4 (ENSCHIG00000007788) #36	TAT (ENSCHIG00000018390) #37
Rambouillet Sheep	MODERN SPECIES	5	GPATCH1 (ENSOARG00020011298) #10	RHPN2 (ENSOARG00020011137) #12	FAAP24 (ENSOARG00020011075) #13	CEP89 (ENSOARG00020010986) #14	SLC7A9 (ENSOARG00020010886)	TDRD12 (ENSOARG00020010036)	NUDT19 (ENSOARG00020018292) #15	ENSOARG00020018245	RGS9BP (ENSOARG00020018201) #16	TLCD3A (ENSOARG00020018181)	ANKRD27 (ENSOARG00020017656) #17	PDCD5 (ENSOARG00020017391) #18	DPY19L3 (ENSOARG00020017008) #19	ZNF507 (ENSOARG00020016947) #20	ENSOARG00020016916	TSHZ3 (ENSOARG00020016853) #22	ZNF536 (ENSOARG00020016711) #23	URI1 (ENSOARG00020016490) #24	CCNE1 (ENSOARG00020016006) #25	C19orf12 (ENSOARG00020015895) #26	PLEKHF1 (ENSOARG00020015872) #27	POP4 (ENSOARG00020015812) #28	ENSOARG00020015294 #29	CMTR2 (ENSOARG00020015255) #31	CALB2 (ENSOARG00020015182) #32	TLE7 (ENSOARG00020015063) #33	ZNF23 (ENSOARG00020015007) #34	ZNF19 (ENSOARG00020014924) #35	CHST4 (ENSOARG00020014903) #36	TAT (ENSOARG00020014764) #37	ENSOARG00020014620
Bovinae	ANCESTRAL SPECIES	3	ENSGT00390000007074 #10	ENSGT00940000153837.a.b #12	ENSGT00940000154509.y.b.a.a.b	ENSGT00390000009456 #13	ENSGT00390000018876 #14	ENSGT00940000156370	ENSGT00420000029847	ENSGT00420000029858 #15	ENSGT00950000186085	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00940000157868.c #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00610000086095 #29	ENSGT00940000161773 #31	ENSGT00950000183108.b.a.a #32	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b #33	ENSGT00940000162377 #34	ENSGT00940000163278 #35	ENSGT00940000162746 #36	ENSGT00940000156704 #37	ENSGT00950000183102.A.b.b
Bos	ANCESTRAL SPECIES	4	ENSGT00390000007074 #10	ENSGT00940000153837.a.b #12	ENSGT00940000154509.y.b.a.a.b	ENSGT00390000009456 #13	ENSGT00390000018876 #14	ENSGT00940000156370	ENSGT00420000029847	ENSGT00420000029858 #15	ENSGT00950000186085	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00940000157868.c #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00610000086095 #29	ENSGT00940000161773 #31	ENSGT00950000183108.b.a.a #32	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b #33	ENSGT00940000162377 #34	ENSGT00940000163278 #35	ENSGT00940000162746 #36	ENSGT00940000156704 #37	ENSGT00950000183102.A.b.b
Bos_b	ANCESTRAL SPECIES		ENSGT00390000007074 #10	ENSGT00940000154509.y.b.a.a.b	ENSGT00940000153837.a.b #12	ENSGT00390000009456 #13	ENSGT00390000018876 #14	ENSGT00940000156370	ENSGT00420000029847	ENSGT00950000186085	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00940000157868.c #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00610000086095 #29	ENSGT00940000161773 #31	ENSGT00950000183108.b.a.a #32	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b #33	ENSGT00940000162377 #34	ENSGT00940000163278 #35	ENSGT00940000162746 #36	ENSGT00940000156704 #37	ENSGT00950000183102.A.b.b
Cow	MODERN SPECIES	9	WDR88 (ENSBTAG00000031810)	GPATCH1 (ENSBTAG00000000721) #10	ENSBTAG00000049582	RHPN2 (ENSBTAG00000003089) #12	FAAP24 (ENSBTAG00000010403) #13	CEP89 (ENSBTAG00000004864) #14	SLC7A9 (ENSBTAG00000013338)	TDRD12 (ENSBTAG00000019266)	ENSBTAG00000049809	NUDT19 (ENSBTAG00000023614) #15	RGS9BP (ENSBTAG00000039441) #16	ANKRD27 (ENSBTAG00000009305) #17	PDCD5 (ENSBTAG00000009304) #18	DPY19L3 (ENSBTAG00000015165) #19	ZNF507 (ENSBTAG00000014123) #20	TSHZ3 (ENSBTAG00000002687) #22	ZNF536 (ENSBTAG00000007262) #23	URI1 (ENSBTAG00000007559) #24	CCNE1 (ENSBTAG00000004735) #25	C18H19orf12 (ENSBTAG00000020434) #26	PLEKHF1 (ENSBTAG00000008625) #27	POP4 (ENSBTAG00000002223) #28	ENSBTAG00000051512 #29	CMTR2 (ENSBTAG00000047367) #31	CALB2 (ENSBTAG00000001075) #32	ZNF23 (ENSBTAG00000050281) #34	ZNF19 (ENSBTAG00000032018) #35	CHST4 (ENSBTAG00000016968) #36	TAT (ENSBTAG00000002214) #37	MARVELD3 (ENSBTAG00000007544)	PHLPP2 (ENSBTAG00000007545)
Hybrid Bos Indicus	MODERN SPECIES	9	WDR88 (ENSBIXG00005028616)	GPATCH1 (ENSBIXG00005028563) #10	RHPN2 (ENSBIXG00005004919) #12	ENSBIXG00005028497	FAAP24 (ENSBIXG00005002469) #13	CEP89 (ENSBIXG00005028440) #14	SLC7A9 (ENSBIXG00005004880)	TDRD12 (ENSBIXG00005028317)	ENSBIXG00005028232	RGS9BP (ENSBIXG00005028222) #16	ANKRD27 (ENSBIXG00005028194) #17	ENSBIXG00005004831	DPY19L3 (ENSBIXG00005028026) #19	ZNF507 (ENSBIXG00005027929) #20	ENSBIXG00005027900 #21	TSHZ3 (ENSBIXG00005027810) #22	ZNF536 (ENSBIXG00005004770) #23	URI1 (ENSBIXG00005027711) #24	CCNE1 (ENSBIXG00005027655) #25	C19orf12 (ENSBIXG00005027595) #26	PLEKHF1 (ENSBIXG00005027531) #27	POP4 (ENSBIXG00005027514) #28	ENSBIXG00005027467	ENSBIXG00005004688 #29	CMTR2 (ENSBIXG00005027123) #31	CALB2 (ENSBIXG00005027092) #32	TLE7 (ENSBIXG00005027053) #33	ZNF23 (ENSBIXG00005004631) #34	ZNF19 (ENSBIXG00005026993) #35	CHST4 (ENSBIXG00005026947) #36	TAT (ENSBIXG00005026937) #37
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000162291	ENSGT00390000007074 #10	ENSGT00940000153837.a.b #12	ENSGT00940000154509.y.b.a.a.b	ENSGT00390000009456 #13	ENSGT00390000018876 #14	ENSGT00940000156370	ENSGT00420000029847	ENSGT00420000029858 #15	ENSGT00950000186085	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00610000086095 #29	ENSGT00940000161773 #31	ENSGT00950000183108.b.a.a #32	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b #33	ENSGT00940000162377 #34	ENSGT00940000163278 #35	ENSGT00940000162746 #36	ENSGT00940000156704 #37	ENSGT00950000183102.A.b.b
Domestic yak	MODERN SPECIES	12	WDR88 (ENSBGRG00000012742)	GPATCH1 (ENSBGRG00000012937) #10	RHPN2 (ENSBGRG00000013257) #12	ENSBGRG00000013384	FAAP24 (ENSBGRG00000013456) #13	CEP89 (ENSBGRG00000013711) #14	SLC7A9 (ENSBGRG00000014100)	TDRD12 (ENSBGRG00000014365)	NUDT19 (ENSBGRG00000015404) #15	ENSBGRG00000015627	RGS9BP (ENSBGRG00000015694) #16	ANKRD27 (ENSBGRG00000015781) #17	PDCD5 (ENSBGRG00000016600) #18	DPY19L3 (ENSBGRG00000016779) #19	ZNF507 (ENSBGRG00000017072) #20	ENSBGRG00000017301 #22	ENSBGRG00000017388	ZNF536 (ENSBGRG00000017429) #23	URI1 (ENSBGRG00000017617) #24	CCNE1 (ENSBGRG00000017848) #25	C19orf12 (ENSBGRG00000018064) #26	PLEKHF1 (ENSBGRG00000018110) #27	POP4 (ENSBGRG00000018144) #28	ENSBGRG00000018230 #29	CMTR2 (ENSBGRG00000018577) #31	CALB2 (ENSBGRG00000018597) #32	TLE7 (ENSBGRG00000018847) #33	ZNF23 (ENSBGRG00000018887) #34	ZNF19 (ENSBGRG00000018945) #35	ENSBGRG00000019020	CHST4 (ENSBGRG00000019045) #36
Wild yak	MODERN SPECIES	1955																TSHZ3 (ENSBMUG00000008971) #22	ZNF536 (ENSBMUG00000008978) #23
American bison	MODERN SPECIES	3211																TSHZ3 (ENSBBBG00000004412) #22	ZNF536 (ENSBBBG00000017947) #23	URI1 (ENSBBBG00000017939) #24	CCNE1 (ENSBBBG00000017896) #25	C19orf12 (ENSBBBG00000017853) #26	PLEKHF1 (ENSBBBG00000008008) #27	POP4 (ENSBBBG00000017837) #28	ENSBBBG00000017818 #29	CMTR2 (ENSBBBG00000004380) #31	CALB2 (ENSBBBG00000017758) #32	TLE7 (ENSBBBG00000017714) #33	ZNF23 (ENSBBBG00000017702) #34	ZNF19 (ENSBBBG00000017689) #35	CHST4 (ENSBBBG00000017670) #36	TAT (ENSBBBG00000017662) #37	ENSBBBG00000017644