Muroidea	ANCESTRAL SPECIES	18	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27	ENSGT00940000161356 #31
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27	ENSGT00390000014208 #28	ENSGT00940000161356 #31	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000163087 #34
Cricetidae	ANCESTRAL SPECIES	26	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00960000190924 #8	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27	ENSGT00390000014208 #28	ENSGT00940000161356 #31	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000163087 #34
Cricetidae_B	ANCESTRAL SPECIES	25	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00960000190924 #8	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27	ENSGT00390000014208 #28	ENSGT00940000161356 #31	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000163087 #34
Northern American deer mouse	MODERN SPECIES		Lrp3 (ENSPEMG00000000320) #7	ENSPEMG00000024856 #8	Gpatch1 (ENSPEMG00000000636) #9	Rhpn2 (ENSPEMG00000020482) #10	Faap24 (ENSPEMG00000021083) #11	Cep89 (ENSPEMG00000020557) #12	Slc7a9 (ENSPEMG00000020346) #13	Tdrd12 (ENSPEMG00000009233) #14	ENSPEMG00000022578 #15	Nudt19 (ENSPEMG00000020519) #16	Rgs9bp (ENSPEMG00000001852) #17	Ankrd27 (ENSPEMG00000020526) #18	Pdcd5 (ENSPEMG00000005766) #19	Dpy19l3 (ENSPEMG00000020636) #20	Zfp507 (ENSPEMG00000023579) #21	Tshz3 (ENSPEMG00000024219) #22	Zfp536 (ENSPEMG00000014198) #23	Uri1 (ENSPEMG00000021114) #24	Ccne1 (ENSPEMG00000020299) #25	1600014C10Rik (ENSPEMG00000030733) #26	ENSPEMG00000014034 #27	ENSPEMG00000026755 #28	ENSPEMG00000019774 #29	ENSPEMG00000026788 #30	Vstm2b (ENSPEMG00000021557) #31	ENSPEMG00000024496 #32	Zfp619 (ENSPEMG00000021007) #33	ENSPEMG00000024631 #34	ENSPEMG00000027743 #35	Plekhg2 (ENSPEMG00000017217) #36	Zfp36 (ENSPEMG00000007506) #37
Prairie vole	MODERN SPECIES	115	Slc7a10 (ENSMOCG00000020699)	Lrp3 (ENSMOCG00000007412) #7	Gpatch1 (ENSMOCG00000000174) #9	Rhpn2 (ENSMOCG00000015268) #10	Faap24 (ENSMOCG00000017357) #11	Cep89 (ENSMOCG00000000261) #12	Slc7a9 (ENSMOCG00000001789) #13	Tdrd12 (ENSMOCG00000002366) #14	Nudt19 (ENSMOCG00000017828) #16	Rgs9bp (ENSMOCG00000002309) #17	Ankrd27 (ENSMOCG00000013668) #18	ENSMOCG00000016930 #19	Dpy19l3 (ENSMOCG00000009571) #20	Zfp507 (ENSMOCG00000017422) #21	ENSMOCG00000015706	Tshz3 (ENSMOCG00000012794) #22	Zfp536 (ENSMOCG00000011684) #23	Uri1 (ENSMOCG00000018448) #24	Ccne1 (ENSMOCG00000008837) #25	1600014C10Rik (ENSMOCG00000007337) #26	Plekhf1 (ENSMOCG00000017276)
Cricetinae	ANCESTRAL SPECIES	39	ENSGT00940000162646	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27
Chinese hamster chok1gshd	MODERN SPECIES	282	Slc7a10 (ENSCGRG00001006085)	Lrp3 (ENSCGRG00001000089) #7	Gpatch1 (ENSCGRG00001016736) #9	Rhpn2 (ENSCGRG00001013772) #10	Faap24 (ENSCGRG00001012863) #11	ENSCGRG00001000081	Slc7a9 (ENSCGRG00001005745) #13	Tdrd12 (ENSCGRG00001021407) #14	Nudt19 (ENSCGRG00001017272) #16	Rgs9bp (ENSCGRG00001006642) #17	Ankrd27 (ENSCGRG00001018594) #18	ENSCGRG00001016049 #19	ENSCGRG00001014250	Dpy19l3 (ENSCGRG00001022217) #20	Zfp507 (ENSCGRG00001020787) #21	Tshz3 (ENSCGRG00001015566) #22	Zfp536 (ENSCGRG00001014547) #23	Uri1 (ENSCGRG00001019892) #24	Ccne1 (ENSCGRG00001015867) #25	1600014C10Rik (ENSCGRG00001014004) #26	Plekhf1 (ENSCGRG00001014179)	ENSCGRG00001012663	ENSCGRG00001013673
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27	ENSGT00390000014208.y.b #28
Mus	ANCESTRAL SPECIES		ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728	ENSGT00390000010067 #27	ENSGT00390000014208.y.b #28	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000161356 #31	ENSGT00390000014208.z #28	ENSGT00390000014208.y.a #28	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t	ENSGT00940000163075	ENSGT01080000257333.A.a.b.a.b.b.a.a.d.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728.e	ENSGT00390000010067 #27	ENSGT00390000014208.y.b #28	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000161356 #31	ENSGT00390000014208.z #28	ENSGT00390000014208.y.a #28	ENSGT00940000154469.a.a.b.b.b	ENSGT00950000183069.b.b.a.a.e.a.a.b.a.b.b	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t
Mus_B	ANCESTRAL SPECIES		ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728.e	ENSGT00390000010067 #27	ENSGT00390000014208.y.b.a #28	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000161356 #31	ENSGT00390000014208.z #28	ENSGT00390000014208.y.a.a.a #28	ENSGT00940000154469.a.a.b.b.b	ENSGT00950000183069.b.b.a.a.e.a.a.b.a.b.b	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t
Mus_C	ANCESTRAL SPECIES	32	ENSGT00940000156469	ENSGT00940000160021 #7	ENSGT00940000162291	ENSGT00390000007074 #9	ENSGT00940000153837.a.b #10	ENSGT00390000009456 #11	ENSGT00390000018876 #12	ENSGT00940000156370 #13	ENSGT00420000029847 #14	ENSGT00420000029858 #16	ENSGT00940000153725.a.b.a #17	ENSGT00940000157021 #18	ENSGT00390000011085 #19	ENSGT00530000063023.A.a #20	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728.e	ENSGT00390000010067 #27	ENSGT01030000234576.D.a.b.b.b.g.b #33	ENSGT00940000161356 #31	ENSGT00940000154469.a.a.b.b.b
spretus	MODERN SPECIES	16	Cebpg (MGP_SPRETEiJ_G0030677)	Cebpa (MGP_SPRETEiJ_G0030678)	Slc7a10 (MGP_SPRETEiJ_G0030679)	Lrp3 (MGP_SPRETEiJ_G0030680) #7	Gpatch1 (MGP_SPRETEiJ_G0030681) #9	Rhpn2 (MGP_SPRETEiJ_G0030682) #10	Faap24 (MGP_SPRETEiJ_G0030683) #11	Cep89 (MGP_SPRETEiJ_G0030684) #12	Slc7a9 (MGP_SPRETEiJ_G0030685) #13	Tdrd12 (MGP_SPRETEiJ_G0030686) #14	Rgs9bp (MGP_SPRETEiJ_G0030688) #17	Ankrd27 (MGP_SPRETEiJ_G0030689) #18	Pdcd5 (MGP_SPRETEiJ_G0030690) #19	Dpy19l3 (MGP_SPRETEiJ_G0030691) #20	Zfp507 (MGP_SPRETEiJ_G0030692) #21	Tshz3 (MGP_SPRETEiJ_G0030693) #22	Zfp536 (MGP_SPRETEiJ_G0030694) #23	Uri1 (MGP_SPRETEiJ_G0030695) #24	Ccne1 (MGP_SPRETEiJ_G0030696) #25	1600014C10Rik (MGP_SPRETEiJ_G0030697) #26	Plekhf1 (MGP_SPRETEiJ_G0030698)	Pop4 (MGP_SPRETEiJ_G0030699) #27	MGP_SPRETEiJ_G0030700 #28	Zfp619 (MGP_SPRETEiJ_G0030701) #33	Vstm2b (MGP_SPRETEiJ_G0030702) #31	AI987944 (MGP_SPRETEiJ_G0030703)	AW146154 (MGP_SPRETEiJ_G0030704)	MGP_SPRETEiJ_G0030705	MGP_SPRETEiJ_G0030706	Zfp788 (MGP_SPRETEiJ_G0030707)	MGP_SPRETEiJ_G0030708
Steppe mouse	MODERN SPECIES	3056										ENSMSIG00000018080 #16	Rgs9bp (ENSMSIG00000018095) #17	Ankrd27 (ENSMSIG00000018102) #18	Pdcd5 (ENSMSIG00000018284) #19	Dpy19l3 (ENSMSIG00000018318) #20	Zfp507 (ENSMSIG00000018409) #21	Tshz3 (ENSMSIG00000018467) #22
Mouse	MODERN SPECIES	16	Slc7a10 (ENSMUSG00000030495)	Lrp3 (ENSMUSG00000001802) #7	Wdr88 (ENSMUSG00000118454)	Gpatch1 (ENSMUSG00000063808) #9	Rhpn2 (ENSMUSG00000030494) #10	Faap24 (ENSMUSG00000030493) #11	Cep89 (ENSMUSG00000023072) #12	Slc7a9 (ENSMUSG00000030492) #13	Tdrd12 (ENSMUSG00000030491) #14	Nudt19 (ENSMUSG00000034875) #16	Rgs9bp (ENSMUSG00000056043) #17	Ankrd27 (ENSMUSG00000034867) #18	Pdcd5 (ENSMUSG00000030417) #19	Dpy19l3 (ENSMUSG00000043671) #20	Zfp507 (ENSMUSG00000044452) #21	Tshz3 (ENSMUSG00000021217) #22	Zfp536 (ENSMUSG00000043456) #23	Uri1 (ENSMUSG00000030421) #24	Ccne1 (ENSMUSG00000002068) #25	1600014C10Rik (ENSMUSG00000054676) #26	Plekhf1 (ENSMUSG00000074170)	Pop4 (ENSMUSG00000030423) #27	Gm5591 (ENSMUSG00000060565) #28	Gm5114 (ENSMUSG00000053742) #28	Zfp619 (ENSMUSG00000068959) #33	Vstm2b (ENSMUSG00000039257) #31	4930433I11Rik (ENSMUSG00000091692) #28	Gm4884 (ENSMUSG00000048312) #28	Gm5592 (ENSMUSG00000072259) #28	AI987944 (ENSMUSG00000056383)	Vmn2r57 (ENSMUSG00000066537)
Ryukyu mouse	MODERN SPECIES	16	Cebpa (MGP_CAROLIEiJ_G0029579)	Slc7a10 (MGP_CAROLIEiJ_G0029580)	Lrp3 (MGP_CAROLIEiJ_G0029581) #7	Gpatch1 (MGP_CAROLIEiJ_G0029582) #9	Rhpn2 (MGP_CAROLIEiJ_G0029583) #10	Faap24 (MGP_CAROLIEiJ_G0029584) #11	Cep89 (MGP_CAROLIEiJ_G0029585) #12	Slc7a9 (MGP_CAROLIEiJ_G0029586) #13	Tdrd12 (MGP_CAROLIEiJ_G0029587) #14	Nudt19 (MGP_CAROLIEiJ_G0029588) #16	Rgs9bp (MGP_CAROLIEiJ_G0029589) #17	Ankrd27 (MGP_CAROLIEiJ_G0029590) #18	MGP_CAROLIEiJ_G0029591 #19	Dpy19l3 (MGP_CAROLIEiJ_G0029592) #20	Zfp507 (MGP_CAROLIEiJ_G0029593) #21	Tshz3 (MGP_CAROLIEiJ_G0029594) #22	Zfp536 (MGP_CAROLIEiJ_G0029595) #23	Uri1 (MGP_CAROLIEiJ_G0029596) #24	Ccne1 (MGP_CAROLIEiJ_G0029597) #25	MGP_CAROLIEiJ_G0029598 #26	Plekhf1 (MGP_CAROLIEiJ_G0029599)	Pop4 (MGP_CAROLIEiJ_G0029600) #27	Zfp619 (MGP_CAROLIEiJ_G0029602) #33	Vstm2b (MGP_CAROLIEiJ_G0029603) #31	AI987944 (MGP_CAROLIEiJ_G0029604)	MGP_CAROLIEiJ_G0029605	MGP_CAROLIEiJ_G0029606	Zfp788 (MGP_CAROLIEiJ_G0029608)	MGP_CAROLIEiJ_G0029610	MGP_CAROLIEiJ_G0029609	MGP_CAROLIEiJ_G0029611
Shrew mouse	MODERN SPECIES		Cebpa (MGP_PahariEiJ_G0012813)	Slc7a10 (MGP_PahariEiJ_G0012814)	Lrp3 (MGP_PahariEiJ_G0012815) #7	Gpatch1 (MGP_PahariEiJ_G0012816) #9	Rhpn2 (MGP_PahariEiJ_G0012817) #10	Faap24 (MGP_PahariEiJ_G0012818) #11	Cep89 (MGP_PahariEiJ_G0012819) #12	Slc7a9 (MGP_PahariEiJ_G0012820) #13	Tdrd12 (MGP_PahariEiJ_G0012821) #14	Nudt19 (MGP_PahariEiJ_G0012822) #16	Rgs9bp (MGP_PahariEiJ_G0012823) #17	Ankrd27 (MGP_PahariEiJ_G0012824) #18	MGP_PahariEiJ_G0012825 #19	Dpy19l3 (MGP_PahariEiJ_G0012826) #20	Zfp507 (MGP_PahariEiJ_G0012827) #21	Tshz3 (MGP_PahariEiJ_G0012828) #22	Zfp536 (MGP_PahariEiJ_G0012829) #23	Uri1 (MGP_PahariEiJ_G0012830) #24	Ccne1 (MGP_PahariEiJ_G0012831) #25	1600014C10Rik (MGP_PahariEiJ_G0012832) #26	Plekhf1 (MGP_PahariEiJ_G0012833)	MGP_PahariEiJ_G0012834 #33	Vstm2b (MGP_PahariEiJ_G0012835) #31	MGP_PahariEiJ_G0012836 #28	AI987944 (MGP_PahariEiJ_G0012838)	2610021A01Rik (MGP_PahariEiJ_G0012839)	MGP_PahariEiJ_G0012840	Zfp788 (MGP_PahariEiJ_G0012841)	MGP_PahariEiJ_G0012842	Siglecf (MGP_PahariEiJ_G0012843)	Siglecg (MGP_PahariEiJ_G0012844)
Rat	MODERN SPECIES		Wdr88 (ENSRNOG00000037393)	Gpatch1 (ENSRNOG00000011584) #9	Snrpg (ENSRNOG00000032232)	Rhpn2 (ENSRNOG00000011885) #10	Faap24 (ENSRNOG00000022393) #11	Cep89 (ENSRNOG00000012140) #12	Slc7a9 (ENSRNOG00000012344) #13	Tdrd12 (ENSRNOG00000012719) #14	AC136661.1 (ENSRNOG00000037380)	Nudt19 (ENSRNOG00000059386) #16	Rgs9bp (ENSRNOG00000012877) #17	Ankrd27 (ENSRNOG00000052814) #18	Pdcd5 (ENSRNOG00000068327) #19	Dpy19l3 (ENSRNOG00000021573) #20	Zfp507 (ENSRNOG00000013565) #21	Tshz3 (ENSRNOG00000013938) #22	RGD1562402 (ENSRNOG00000031859)	Zfp536 (ENSRNOG00000014163) #23	Uri1 (ENSRNOG00000014463) #24	Ccne1 (ENSRNOG00000014786) #25	LOC690000 (ENSRNOG00000014966) #26	Plekhf1 (ENSRNOG00000027724)	Pop4 (ENSRNOG00000027646) #27	Marf1-ps1 (ENSRNOG00000051237)	LOC690114 (ENSRNOG00000027370) #28	LOC365238 (ENSRNOG00000015168)	LOC108348090 (ENSRNOG00000067296) #34	Zfp939 (ENSRNOG00000064970) #34	Zfp619 (ENSRNOG00000066986) #33	LOC102548320 (ENSRNOG00000069276) #33	Cdc42se2 (ENSRNOG00000037364)
Upper Galilee mountains blind mole rat	MODERN SPECIES	458														Dpy19l3 (ENSNGAG00000010668) #20	Zfp507 (ENSNGAG00000010990) #21	Tshz3 (ENSNGAG00000011318) #22