Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014.s #30	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014.s #30
Marmotini_b	ANCESTRAL SPECIES	50	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014.s #30
Arctic ground squirrel	MODERN SPECIES	86	ENSUPAG00010010556 #7	SLC7A10 (ENSUPAG00010010545) #8	LRP3 (ENSUPAG00010010534) #9	ENSUPAG00010010532 #10	ENSUPAG00010010526 #11	GPATCH1 (ENSUPAG00010010496) #12	RHPN2 (ENSUPAG00010010489) #13	ENSUPAG00010010487 #14	CEP89 (ENSUPAG00010010410) #15	SLC7A9 (ENSUPAG00010010354) #16	TDRD12 (ENSUPAG00010010237) #17	RGS9BP (ENSUPAG00010010233) #18	ANKRD27 (ENSUPAG00010010181) #19	PDCD5 (ENSUPAG00010010174) #20	ZNF507 (ENSUPAG00010010113) #21	TSHZ3 (ENSUPAG00010010104) #22	ZNF536 (ENSUPAG00010010061) #23	URI1 (ENSUPAG00010010020) #24	CCNE1 (ENSUPAG00010010001) #25	C19orf12 (ENSUPAG00010009992) #26	PLEKHF1 (ENSUPAG00010009986) #27	POP4 (ENSUPAG00010009976) #28	VSTM2B (ENSUPAG00010009950) #29	UQCRFS1 (ENSUPAG00010009946) #30
Squirrel	MODERN SPECIES	170	CEBPG (ENSSTOG00000007596)	ENSSTOG00000027963 #7	SLC7A10 (ENSSTOG00000009450) #8	LRP3 (ENSSTOG00000009443) #9	GPATCH1 (ENSSTOG00000003720) #12	RHPN2 (ENSSTOG00000002103) #13	CEP89 (ENSSTOG00000019373) #15	SLC7A9 (ENSSTOG00000013674) #16	TDRD12 (ENSSTOG00000013638) #17	ENSSTOG00000031724	RGS9BP (ENSSTOG00000027616) #18	ANKRD27 (ENSSTOG00000013613) #19	PDCD5 (ENSSTOG00000025794) #20	DPY19L3 (ENSSTOG00000025908)	ZNF507 (ENSSTOG00000022278) #21	TSHZ3 (ENSSTOG00000024242) #22	ZNF536 (ENSSTOG00000013259) #23	URI1 (ENSSTOG00000009658) #24	CCNE1 (ENSSTOG00000009648) #25	C19orf12 (ENSSTOG00000020602) #26	PLEKHF1 (ENSSTOG00000023108) #27	POP4 (ENSSTOG00000011016) #28	VSTM2B (ENSSTOG00000020445) #29	ENSSTOG00000011909 #30
Alpin marmot	MODERN SPECIES	45	SLC7A10 (ENSMMMG00000006705) #8	LRP3 (ENSMMMG00000006727) #9	ENSMMMG00000006739 #11	GPATCH1 (ENSMMMG00000006748) #12	RHPN2 (ENSMMMG00000006785) #13	FAAP24 (ENSMMMG00000006814) #14	CEP89 (ENSMMMG00000006832) #15	SLC7A9 (ENSMMMG00000007036) #16	TDRD12 (ENSMMMG00000007074) #17	NUDT19 (ENSMMMG00000007175)	RGS9BP (ENSMMMG00000007176) #18	ANKRD27 (ENSMMMG00000007203) #19	PDCD5 (ENSMMMG00000007305) #20	DPY19L3 (ENSMMMG00000007308)	ZNF507 (ENSMMMG00000007322) #21	TSHZ3 (ENSMMMG00000007335) #22	ZNF536 (ENSMMMG00000007356) #23	URI1 (ENSMMMG00000007374) #24	CCNE1 (ENSMMMG00000007385) #25	C19orf12 (ENSMMMG00000007391) #26	PLEKHF1 (ENSMMMG00000007421) #27	POP4 (ENSMMMG00000007446) #28	VSTM2B (ENSMMMG00000007454) #29
Eurasian red squirrel	MODERN SPECIES	8	SLC7A10 (ENSSVLG00005022473) #8	LRP3 (ENSSVLG00005022405) #9	WDR88 (ENSSVLG00005022304) #11	GPATCH1 (ENSSVLG00005022166) #12	RHPN2 (ENSSVLG00005022031) #13	ENSSVLG00005021973 #14	CEP89 (ENSSVLG00005021928) #15	SLC7A9 (ENSSVLG00005021851) #16	TDRD12 (ENSSVLG00005021333) #17	NUDT19 (ENSSVLG00005021230)	RGS9BP (ENSSVLG00005021208) #18	ANKRD27 (ENSSVLG00005021121) #19	ENSSVLG00005020933 #20	DPY19L3 (ENSSVLG00005020851)	ZNF507 (ENSSVLG00005020811) #21	TSHZ3 (ENSSVLG00005020787) #22	ZNF536 (ENSSVLG00005020746) #23	URI1 (ENSSVLG00005020418) #24	CCNE1 (ENSSVLG00005020303) #25	ENSSVLG00005020245 #26	PLEKHF1 (ENSSVLG00005020227) #27	POP4 (ENSSVLG00005020169) #28	VSTM2B (ENSSVLG00005020091) #29	ENSSVLG00005020050 #30	ENSSVLG00005020000	ENSSVLG00005019946	ENSSVLG00005019913	ENSSVLG00005019872	SHCBP1 (ENSSVLG00005019832)	ENSSVLG00005019566	VPS35 (ENSSVLG00005019175)
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085.nb #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.a.a.a	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085.nb #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085.nb #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Long-tailed chinchilla	MODERN SPECIES	175	ATP4A (ENSCLAG00000013870)	HAUS5 (ENSCLAG00000011624)	RBM42 (ENSCLAG00000012865)	ETV2 (ENSCLAG00000011446)	RHPN2 (ENSCLAG00000011890) #13	FAAP24 (ENSCLAG00000013484) #14	ENSCLAG00000012488 #15	SLC7A9 (ENSCLAG00000012671) #16	TDRD12 (ENSCLAG00000012138) #17	NUDT19 (ENSCLAG00000015394)	RGS9BP (ENSCLAG00000017932) #18	ENSCLAG00000013353 #19	ENSCLAG00000014452 #20	DPY19L3 (ENSCLAG00000013128)	ZNF507 (ENSCLAG00000012690) #21	TSHZ3 (ENSCLAG00000012902) #22	ZNF536 (ENSCLAG00000014818) #23	URI1 (ENSCLAG00000014617) #24	CCNE1 (ENSCLAG00000016202) #25	C19orf12 (ENSCLAG00000015360) #26	PLEKHF1 (ENSCLAG00000012584) #27	POP4 (ENSCLAG00000013162) #28	VSTM2B (ENSCLAG00000016538) #29	UQCRFS1 (ENSCLAG00000011437) #30	FCRL5 (ENSCLAG00000011767)	FCRL3 (ENSCLAG00000012604)	FCRL1 (ENSCLAG00000014567)	CD5L (ENSCLAG00000015227)	ENSCLAG00000015395	KIRREL1 (ENSCLAG00000013814)	CD1D (ENSCLAG00000013027)
Degu	MODERN SPECIES	124	ENSODEG00000014537	ENSODEG00000020158	RHPN2 (ENSODEG00000014557) #13	FAAP24 (ENSODEG00000013890) #14	CEP89 (ENSODEG00000014225) #15	ENSODEG00000015062 #16	ENSODEG00000014355 #16	TDRD12 (ENSODEG00000014443) #17	NUDT19 (ENSODEG00000014770)	RGS9BP (ENSODEG00000020326) #18	ANKRD27 (ENSODEG00000013621) #19	ENSODEG00000013248 #20	DPY19L3 (ENSODEG00000013833)	ENSODEG00000013993 #21	ENSODEG00000014205	TSHZ3 (ENSODEG00000013840) #22	ZNF536 (ENSODEG00000013676) #23	URI1 (ENSODEG00000013616) #24	CCNE1 (ENSODEG00000014690) #25	ENSODEG00000020140	C19orf12 (ENSODEG00000013188) #26	ENSODEG00000020216	ENSODEG00000020166 #27	POP4 (ENSODEG00000013025) #28	VSTM2B (ENSODEG00000014510) #29	ENSODEG00000013453	UQCRFS1 (ENSODEG00000014654) #30	ENSODEG00000014952	ENSODEG00000020181	ENSODEG00000014146	CD5L (ENSODEG00000012955)
Guinea pig	MODERN SPECIES	56	RBM42 (ENSCPOG00000012365)	ENSCPOG00000013209	RHPN2 (ENSCPOG00000011968) #13	FAAP24 (ENSCPOG00000011965) #14	CEP89 (ENSCPOG00000001470) #15	ENSCPOG00000011225 #16	ENSCPOG00000030866 #16	ENSCPOG00000034999 #16	TDRD12 (ENSCPOG00000002876) #17	NUDT19 (ENSCPOG00000038218)	RGS9BP (ENSCPOG00000000730) #18	ANKRD27 (ENSCPOG00000000160) #19	PDCD5 (ENSCPOG00000040356) #20	DPY19L3 (ENSCPOG00000012483)	ENSCPOG00000012473 #21	TSHZ3 (ENSCPOG00000003591) #22	ZNF536 (ENSCPOG00000008744) #23	URI1 (ENSCPOG00000004105) #24	CCNE1 (ENSCPOG00000004836) #25	C19orf12 (ENSCPOG00000021635) #26	PLEKHF1 (ENSCPOG00000036685) #27	POP4 (ENSCPOG00000002992) #28	VSTM2B (ENSCPOG00000022127) #29	UQCRFS1 (ENSCPOG00000038582) #30	ENSCPOG00000020010	ENSCPOG00000005105	FCRL1 (ENSCPOG00000031919)	CD5L (ENSCPOG00000002911)	ENSCPOG00000001646	KIRREL1 (ENSCPOG00000004317)	ENSCPOG00000036278
Naked mole-rat female	MODERN SPECIES	20	RBM42 (ENSHGLG00000008418)	ENSHGLG00000006342	ENSHGLG00000005491 #13	FAAP24 (ENSHGLG00000047787) #14	CEP89 (ENSHGLG00000015749) #15	TDRD12 (ENSHGLG00000015608) #17	ENSHGLG00000049663	ENSHGLG00000032764	ENSHGLG00000033957	RGS9BP (ENSHGLG00000043502) #18	ENSHGLG00000000739 #19	PDCD5 (ENSHGLG00000015879) #20	DPY19L3 (ENSHGLG00000008160)	ZNF507 (ENSHGLG00000014642) #21	ENSHGLG00000048014	TSHZ3 (ENSHGLG00000015820) #22	ZNF536 (ENSHGLG00000013749) #23	URI1 (ENSHGLG00000009294) #24	CCNE1 (ENSHGLG00000005512) #25	C19orf12 (ENSHGLG00000013665) #26	PLEKHF1 (ENSHGLG00000015663) #27	POP4 (ENSHGLG00000043121) #28	VSTM2B (ENSHGLG00000010328) #29	ENSHGLG00000034008	UQCRFS1 (ENSHGLG00000046640) #30	ENSHGLG00000049204	ENSHGLG00000005888	FCRL1 (ENSHGLG00000005552)	CD5L (ENSHGLG00000006555)	ENSHGLG00000008016	ENSHGLG00000016598