Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014.s #30	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014.s #30
Marmotini_b	ANCESTRAL SPECIES	50	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014.s #30
Arctic ground squirrel	MODERN SPECIES	86	ENSUPAG00010010556 #7	SLC7A10 (ENSUPAG00010010545) #8	LRP3 (ENSUPAG00010010534) #9	ENSUPAG00010010532 #10	ENSUPAG00010010526 #11	GPATCH1 (ENSUPAG00010010496) #12	RHPN2 (ENSUPAG00010010489) #13	ENSUPAG00010010487 #14	CEP89 (ENSUPAG00010010410) #15	SLC7A9 (ENSUPAG00010010354) #16	TDRD12 (ENSUPAG00010010237) #17	RGS9BP (ENSUPAG00010010233) #18	ANKRD27 (ENSUPAG00010010181) #19	PDCD5 (ENSUPAG00010010174) #20	ZNF507 (ENSUPAG00010010113) #21	TSHZ3 (ENSUPAG00010010104) #22	ZNF536 (ENSUPAG00010010061) #23	URI1 (ENSUPAG00010010020) #24	CCNE1 (ENSUPAG00010010001) #25	C19orf12 (ENSUPAG00010009992) #26	PLEKHF1 (ENSUPAG00010009986) #27	POP4 (ENSUPAG00010009976) #28	VSTM2B (ENSUPAG00010009950) #29	UQCRFS1 (ENSUPAG00010009946) #30
Squirrel	MODERN SPECIES	170	CEBPG (ENSSTOG00000007596)	ENSSTOG00000027963 #7	SLC7A10 (ENSSTOG00000009450) #8	LRP3 (ENSSTOG00000009443) #9	GPATCH1 (ENSSTOG00000003720) #12	RHPN2 (ENSSTOG00000002103) #13	CEP89 (ENSSTOG00000019373) #15	SLC7A9 (ENSSTOG00000013674) #16	TDRD12 (ENSSTOG00000013638) #17	ENSSTOG00000031724	RGS9BP (ENSSTOG00000027616) #18	ANKRD27 (ENSSTOG00000013613) #19	PDCD5 (ENSSTOG00000025794) #20	DPY19L3 (ENSSTOG00000025908)	ZNF507 (ENSSTOG00000022278) #21	TSHZ3 (ENSSTOG00000024242) #22	ZNF536 (ENSSTOG00000013259) #23	URI1 (ENSSTOG00000009658) #24	CCNE1 (ENSSTOG00000009648) #25	C19orf12 (ENSSTOG00000020602) #26	PLEKHF1 (ENSSTOG00000023108) #27	POP4 (ENSSTOG00000011016) #28	VSTM2B (ENSSTOG00000020445) #29	ENSSTOG00000011909 #30
Alpin marmot	MODERN SPECIES	45	SLC7A10 (ENSMMMG00000006705) #8	LRP3 (ENSMMMG00000006727) #9	ENSMMMG00000006739 #11	GPATCH1 (ENSMMMG00000006748) #12	RHPN2 (ENSMMMG00000006785) #13	FAAP24 (ENSMMMG00000006814) #14	CEP89 (ENSMMMG00000006832) #15	SLC7A9 (ENSMMMG00000007036) #16	TDRD12 (ENSMMMG00000007074) #17	NUDT19 (ENSMMMG00000007175)	RGS9BP (ENSMMMG00000007176) #18	ANKRD27 (ENSMMMG00000007203) #19	PDCD5 (ENSMMMG00000007305) #20	DPY19L3 (ENSMMMG00000007308)	ZNF507 (ENSMMMG00000007322) #21	TSHZ3 (ENSMMMG00000007335) #22	ZNF536 (ENSMMMG00000007356) #23	URI1 (ENSMMMG00000007374) #24	CCNE1 (ENSMMMG00000007385) #25	C19orf12 (ENSMMMG00000007391) #26	PLEKHF1 (ENSMMMG00000007421) #27	POP4 (ENSMMMG00000007446) #28	VSTM2B (ENSMMMG00000007454) #29
Eurasian red squirrel	MODERN SPECIES	8	SLC7A10 (ENSSVLG00005022473) #8	LRP3 (ENSSVLG00005022405) #9	WDR88 (ENSSVLG00005022304) #11	GPATCH1 (ENSSVLG00005022166) #12	RHPN2 (ENSSVLG00005022031) #13	ENSSVLG00005021973 #14	CEP89 (ENSSVLG00005021928) #15	SLC7A9 (ENSSVLG00005021851) #16	TDRD12 (ENSSVLG00005021333) #17	NUDT19 (ENSSVLG00005021230)	RGS9BP (ENSSVLG00005021208) #18	ANKRD27 (ENSSVLG00005021121) #19	ENSSVLG00005020933 #20	DPY19L3 (ENSSVLG00005020851)	ZNF507 (ENSSVLG00005020811) #21	TSHZ3 (ENSSVLG00005020787) #22	ZNF536 (ENSSVLG00005020746) #23	URI1 (ENSSVLG00005020418) #24	CCNE1 (ENSSVLG00005020303) #25	ENSSVLG00005020245 #26	PLEKHF1 (ENSSVLG00005020227) #27	POP4 (ENSSVLG00005020169) #28	VSTM2B (ENSSVLG00005020091) #29	ENSSVLG00005020050 #30	ENSSVLG00005020000	ENSSVLG00005019946	ENSSVLG00005019913	ENSSVLG00005019872	SHCBP1 (ENSSVLG00005019832)	ENSSVLG00005019566	VPS35 (ENSSVLG00005019175)
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085.nb #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.a.a.a	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085.nb #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085.nb #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29	ENSGT00390000001014 #30	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Long-tailed chinchilla	MODERN SPECIES	175	ATP4A (ENSCLAG00000013870)	HAUS5 (ENSCLAG00000011624)	RBM42 (ENSCLAG00000012865)	ETV2 (ENSCLAG00000011446)	RHPN2 (ENSCLAG00000011890) #13	FAAP24 (ENSCLAG00000013484) #14	ENSCLAG00000012488 #15	SLC7A9 (ENSCLAG00000012671) #16	TDRD12 (ENSCLAG00000012138) #17	NUDT19 (ENSCLAG00000015394)	RGS9BP (ENSCLAG00000017932) #18	ENSCLAG00000013353 #19	ENSCLAG00000014452 #20	DPY19L3 (ENSCLAG00000013128)	ZNF507 (ENSCLAG00000012690) #21	TSHZ3 (ENSCLAG00000012902) #22	ZNF536 (ENSCLAG00000014818) #23	URI1 (ENSCLAG00000014617) #24	CCNE1 (ENSCLAG00000016202) #25	C19orf12 (ENSCLAG00000015360) #26	PLEKHF1 (ENSCLAG00000012584) #27	POP4 (ENSCLAG00000013162) #28	VSTM2B (ENSCLAG00000016538) #29	UQCRFS1 (ENSCLAG00000011437) #30	FCRL5 (ENSCLAG00000011767)	FCRL3 (ENSCLAG00000012604)	FCRL1 (ENSCLAG00000014567)	CD5L (ENSCLAG00000015227)	ENSCLAG00000015395	KIRREL1 (ENSCLAG00000013814)	CD1D (ENSCLAG00000013027)
Degu	MODERN SPECIES	124	ENSODEG00000014537	ENSODEG00000020158	RHPN2 (ENSODEG00000014557) #13	FAAP24 (ENSODEG00000013890) #14	CEP89 (ENSODEG00000014225) #15	ENSODEG00000015062 #16	ENSODEG00000014355 #16	TDRD12 (ENSODEG00000014443) #17	NUDT19 (ENSODEG00000014770)	RGS9BP (ENSODEG00000020326) #18	ANKRD27 (ENSODEG00000013621) #19	ENSODEG00000013248 #20	DPY19L3 (ENSODEG00000013833)	ENSODEG00000013993 #21	ENSODEG00000014205	TSHZ3 (ENSODEG00000013840) #22	ZNF536 (ENSODEG00000013676) #23	URI1 (ENSODEG00000013616) #24	CCNE1 (ENSODEG00000014690) #25	ENSODEG00000020140	C19orf12 (ENSODEG00000013188) #26	ENSODEG00000020216	ENSODEG00000020166 #27	POP4 (ENSODEG00000013025) #28	VSTM2B (ENSODEG00000014510) #29	ENSODEG00000013453	UQCRFS1 (ENSODEG00000014654) #30	ENSODEG00000014952	ENSODEG00000020181	ENSODEG00000014146	CD5L (ENSODEG00000012955)
Guinea pig	MODERN SPECIES	56	RBM42 (ENSCPOG00000012365)	ENSCPOG00000013209	RHPN2 (ENSCPOG00000011968) #13	FAAP24 (ENSCPOG00000011965) #14	CEP89 (ENSCPOG00000001470) #15	ENSCPOG00000011225 #16	ENSCPOG00000030866 #16	ENSCPOG00000034999 #16	TDRD12 (ENSCPOG00000002876) #17	NUDT19 (ENSCPOG00000038218)	RGS9BP (ENSCPOG00000000730) #18	ANKRD27 (ENSCPOG00000000160) #19	PDCD5 (ENSCPOG00000040356) #20	DPY19L3 (ENSCPOG00000012483)	ENSCPOG00000012473 #21	TSHZ3 (ENSCPOG00000003591) #22	ZNF536 (ENSCPOG00000008744) #23	URI1 (ENSCPOG00000004105) #24	CCNE1 (ENSCPOG00000004836) #25	C19orf12 (ENSCPOG00000021635) #26	PLEKHF1 (ENSCPOG00000036685) #27	POP4 (ENSCPOG00000002992) #28	VSTM2B (ENSCPOG00000022127) #29	UQCRFS1 (ENSCPOG00000038582) #30	ENSCPOG00000020010	ENSCPOG00000005105	FCRL1 (ENSCPOG00000031919)	CD5L (ENSCPOG00000002911)	ENSCPOG00000001646	KIRREL1 (ENSCPOG00000004317)	ENSCPOG00000036278
Naked mole-rat female	MODERN SPECIES	20	RBM42 (ENSHGLG00000008418)	ENSHGLG00000006342	ENSHGLG00000005491 #13	FAAP24 (ENSHGLG00000047787) #14	CEP89 (ENSHGLG00000015749) #15	TDRD12 (ENSHGLG00000015608) #17	ENSHGLG00000049663	ENSHGLG00000032764	ENSHGLG00000033957	RGS9BP (ENSHGLG00000043502) #18	ENSHGLG00000000739 #19	PDCD5 (ENSHGLG00000015879) #20	DPY19L3 (ENSHGLG00000008160)	ZNF507 (ENSHGLG00000014642) #21	ENSHGLG00000048014	TSHZ3 (ENSHGLG00000015820) #22	ZNF536 (ENSHGLG00000013749) #23	URI1 (ENSHGLG00000009294) #24	CCNE1 (ENSHGLG00000005512) #25	C19orf12 (ENSHGLG00000013665) #26	PLEKHF1 (ENSHGLG00000015663) #27	POP4 (ENSHGLG00000043121) #28	VSTM2B (ENSHGLG00000010328) #29	ENSHGLG00000034008	UQCRFS1 (ENSHGLG00000046640) #30	ENSHGLG00000049204	ENSHGLG00000005888	FCRL1 (ENSHGLG00000005552)	CD5L (ENSHGLG00000006555)	ENSHGLG00000008016	ENSHGLG00000016598
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29
Kangaroo rat	MODERN SPECIES	411	Cebpg (ENSDORG00000027852)	Cebpa (ENSDORG00000027904) #7	Slc7a10 (ENSDORG00000002321) #8	Lrp3 (ENSDORG00000002320) #9	Gpatch1 (ENSDORG00000012546) #12	Rhpn2 (ENSDORG00000010758) #13	Cep89 (ENSDORG00000013896) #15	Slc7a9 (ENSDORG00000026148) #16	Tdrd12 (ENSDORG00000012134) #17	ENSDORG00000026153	Rgs9bp (ENSDORG00000015832) #18	Ankrd27 (ENSDORG00000001832) #19	Pdcd5 (ENSDORG00000023317) #20	Dpy19l3 (ENSDORG00000009853)	ENSDORG00000013877 #21	ENSDORG00000026232 #22	Zfp536 (ENSDORG00000015237) #23	Uri1 (ENSDORG00000012581) #24	Ccne1 (ENSDORG00000007955) #25	Uqcrfs1 (ENSDORG00000004134) #30
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29
Muroidea	ANCESTRAL SPECIES	18	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00940000161356 #29
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00390000014208	ENSGT00940000161356 #29	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000163087
Cricetidae	ANCESTRAL SPECIES	26	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00960000190924	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00390000014208	ENSGT00940000161356 #29	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000163087
Cricetidae_B	ANCESTRAL SPECIES	25	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00960000190924	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00390000014208	ENSGT00940000161356 #29	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000163087
Northern American deer mouse	MODERN SPECIES		Lrp3 (ENSPEMG00000000320) #9	ENSPEMG00000024856	Gpatch1 (ENSPEMG00000000636) #12	Rhpn2 (ENSPEMG00000020482) #13	Faap24 (ENSPEMG00000021083) #14	Cep89 (ENSPEMG00000020557) #15	Slc7a9 (ENSPEMG00000020346) #16	Tdrd12 (ENSPEMG00000009233) #17	ENSPEMG00000022578	Nudt19 (ENSPEMG00000020519)	Rgs9bp (ENSPEMG00000001852) #18	Ankrd27 (ENSPEMG00000020526) #19	Pdcd5 (ENSPEMG00000005766) #20	Dpy19l3 (ENSPEMG00000020636)	Zfp507 (ENSPEMG00000023579) #21	Tshz3 (ENSPEMG00000024219) #22	Zfp536 (ENSPEMG00000014198) #23	Uri1 (ENSPEMG00000021114) #24	Ccne1 (ENSPEMG00000020299) #25	1600014C10Rik (ENSPEMG00000030733) #26	ENSPEMG00000014034 #28	ENSPEMG00000026755	ENSPEMG00000019774	ENSPEMG00000026788	Vstm2b (ENSPEMG00000021557) #29	ENSPEMG00000024496	Zfp619 (ENSPEMG00000021007)	ENSPEMG00000024631	ENSPEMG00000027743	Plekhg2 (ENSPEMG00000017217)	Zfp36 (ENSPEMG00000007506)
Prairie vole	MODERN SPECIES	115	Slc7a10 (ENSMOCG00000020699) #8	Lrp3 (ENSMOCG00000007412) #9	Gpatch1 (ENSMOCG00000000174) #12	Rhpn2 (ENSMOCG00000015268) #13	Faap24 (ENSMOCG00000017357) #14	Cep89 (ENSMOCG00000000261) #15	Slc7a9 (ENSMOCG00000001789) #16	Tdrd12 (ENSMOCG00000002366) #17	Nudt19 (ENSMOCG00000017828)	Rgs9bp (ENSMOCG00000002309) #18	Ankrd27 (ENSMOCG00000013668) #19	ENSMOCG00000016930 #20	Dpy19l3 (ENSMOCG00000009571)	Zfp507 (ENSMOCG00000017422) #21	ENSMOCG00000015706	Tshz3 (ENSMOCG00000012794) #22	Zfp536 (ENSMOCG00000011684) #23	Uri1 (ENSMOCG00000018448) #24	Ccne1 (ENSMOCG00000008837) #25	1600014C10Rik (ENSMOCG00000007337) #26	Plekhf1 (ENSMOCG00000017276) #27
Cricetinae	ANCESTRAL SPECIES	39	ENSGT00940000162646 #7	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28
Chinese hamster chok1gshd	MODERN SPECIES	282	Slc7a10 (ENSCGRG00001006085) #8	Lrp3 (ENSCGRG00001000089) #9	Gpatch1 (ENSCGRG00001016736) #12	Rhpn2 (ENSCGRG00001013772) #13	Faap24 (ENSCGRG00001012863) #14	ENSCGRG00001000081	Slc7a9 (ENSCGRG00001005745) #16	Tdrd12 (ENSCGRG00001021407) #17	Nudt19 (ENSCGRG00001017272)	Rgs9bp (ENSCGRG00001006642) #18	Ankrd27 (ENSCGRG00001018594) #19	ENSCGRG00001016049 #20	ENSCGRG00001014250	Dpy19l3 (ENSCGRG00001022217)	Zfp507 (ENSCGRG00001020787) #21	Tshz3 (ENSCGRG00001015566) #22	Zfp536 (ENSCGRG00001014547) #23	Uri1 (ENSCGRG00001019892) #24	Ccne1 (ENSCGRG00001015867) #25	1600014C10Rik (ENSCGRG00001014004) #26	Plekhf1 (ENSCGRG00001014179) #27	ENSCGRG00001012663	ENSCGRG00001013673
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00390000014208.y.b
Mus	ANCESTRAL SPECIES		ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728 #27	ENSGT00390000010067 #28	ENSGT00390000014208.y.b	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #29	ENSGT00390000014208.z	ENSGT00390000014208.y.a	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t	ENSGT00940000163075	ENSGT01080000257333.A.a.b.a.b.b.a.a.d.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728.e #27	ENSGT00390000010067 #28	ENSGT00390000014208.y.b	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #29	ENSGT00390000014208.z	ENSGT00390000014208.y.a	ENSGT00940000154469.a.a.b.b.b	ENSGT00950000183069.b.b.a.a.e.a.a.b.a.b.b	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t
Mus_B	ANCESTRAL SPECIES		ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728.e #27	ENSGT00390000010067 #28	ENSGT00390000014208.y.b.a	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #29	ENSGT00390000014208.z	ENSGT00390000014208.y.a.a.a	ENSGT00940000154469.a.a.b.b.b	ENSGT00950000183069.b.b.a.a.e.a.a.b.a.b.b	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t
Mus_C	ANCESTRAL SPECIES	32	ENSGT00940000156469 #8	ENSGT00940000160021 #9	ENSGT00940000162291 #11	ENSGT00390000007074 #12	ENSGT00940000153837.a.b #13	ENSGT00390000009456 #14	ENSGT00390000018876 #15	ENSGT00940000156370 #16	ENSGT00420000029847 #17	ENSGT00420000029858	ENSGT00940000153725.a.b.a #18	ENSGT00940000157021 #19	ENSGT00390000011085 #20	ENSGT00530000063023.A.a	ENSGT00490000043434 #21	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #26	ENSGT00940000160728.e #27	ENSGT00390000010067 #28	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #29	ENSGT00940000154469.a.a.b.b.b
spretus	MODERN SPECIES	16	Cebpg (MGP_SPRETEiJ_G0030677)	Cebpa (MGP_SPRETEiJ_G0030678) #7	Slc7a10 (MGP_SPRETEiJ_G0030679) #8	Lrp3 (MGP_SPRETEiJ_G0030680) #9	Gpatch1 (MGP_SPRETEiJ_G0030681) #12	Rhpn2 (MGP_SPRETEiJ_G0030682) #13	Faap24 (MGP_SPRETEiJ_G0030683) #14	Cep89 (MGP_SPRETEiJ_G0030684) #15	Slc7a9 (MGP_SPRETEiJ_G0030685) #16	Tdrd12 (MGP_SPRETEiJ_G0030686) #17	Rgs9bp (MGP_SPRETEiJ_G0030688) #18	Ankrd27 (MGP_SPRETEiJ_G0030689) #19	Pdcd5 (MGP_SPRETEiJ_G0030690) #20	Dpy19l3 (MGP_SPRETEiJ_G0030691)	Zfp507 (MGP_SPRETEiJ_G0030692) #21	Tshz3 (MGP_SPRETEiJ_G0030693) #22	Zfp536 (MGP_SPRETEiJ_G0030694) #23	Uri1 (MGP_SPRETEiJ_G0030695) #24	Ccne1 (MGP_SPRETEiJ_G0030696) #25	1600014C10Rik (MGP_SPRETEiJ_G0030697) #26	Plekhf1 (MGP_SPRETEiJ_G0030698) #27	Pop4 (MGP_SPRETEiJ_G0030699) #28	MGP_SPRETEiJ_G0030700	Zfp619 (MGP_SPRETEiJ_G0030701)	Vstm2b (MGP_SPRETEiJ_G0030702) #29	AI987944 (MGP_SPRETEiJ_G0030703)	AW146154 (MGP_SPRETEiJ_G0030704)	MGP_SPRETEiJ_G0030705	MGP_SPRETEiJ_G0030706	Zfp788 (MGP_SPRETEiJ_G0030707)	MGP_SPRETEiJ_G0030708
Steppe mouse	MODERN SPECIES	3056										ENSMSIG00000018080	Rgs9bp (ENSMSIG00000018095) #18	Ankrd27 (ENSMSIG00000018102) #19	Pdcd5 (ENSMSIG00000018284) #20	Dpy19l3 (ENSMSIG00000018318)	Zfp507 (ENSMSIG00000018409) #21	Tshz3 (ENSMSIG00000018467) #22
Mouse	MODERN SPECIES	16	Slc7a10 (ENSMUSG00000030495) #8	Lrp3 (ENSMUSG00000001802) #9	Wdr88 (ENSMUSG00000118454) #11	Gpatch1 (ENSMUSG00000063808) #12	Rhpn2 (ENSMUSG00000030494) #13	Faap24 (ENSMUSG00000030493) #14	Cep89 (ENSMUSG00000023072) #15	Slc7a9 (ENSMUSG00000030492) #16	Tdrd12 (ENSMUSG00000030491) #17	Nudt19 (ENSMUSG00000034875)	Rgs9bp (ENSMUSG00000056043) #18	Ankrd27 (ENSMUSG00000034867) #19	Pdcd5 (ENSMUSG00000030417) #20	Dpy19l3 (ENSMUSG00000043671)	Zfp507 (ENSMUSG00000044452) #21	Tshz3 (ENSMUSG00000021217) #22	Zfp536 (ENSMUSG00000043456) #23	Uri1 (ENSMUSG00000030421) #24	Ccne1 (ENSMUSG00000002068) #25	1600014C10Rik (ENSMUSG00000054676) #26	Plekhf1 (ENSMUSG00000074170) #27	Pop4 (ENSMUSG00000030423) #28	Gm5591 (ENSMUSG00000060565)	Gm5114 (ENSMUSG00000053742)	Zfp619 (ENSMUSG00000068959)	Vstm2b (ENSMUSG00000039257) #29	4930433I11Rik (ENSMUSG00000091692)	Gm4884 (ENSMUSG00000048312)	Gm5592 (ENSMUSG00000072259)	AI987944 (ENSMUSG00000056383)	Vmn2r57 (ENSMUSG00000066537)
Ryukyu mouse	MODERN SPECIES	16	Cebpa (MGP_CAROLIEiJ_G0029579) #7	Slc7a10 (MGP_CAROLIEiJ_G0029580) #8	Lrp3 (MGP_CAROLIEiJ_G0029581) #9	Gpatch1 (MGP_CAROLIEiJ_G0029582) #12	Rhpn2 (MGP_CAROLIEiJ_G0029583) #13	Faap24 (MGP_CAROLIEiJ_G0029584) #14	Cep89 (MGP_CAROLIEiJ_G0029585) #15	Slc7a9 (MGP_CAROLIEiJ_G0029586) #16	Tdrd12 (MGP_CAROLIEiJ_G0029587) #17	Nudt19 (MGP_CAROLIEiJ_G0029588)	Rgs9bp (MGP_CAROLIEiJ_G0029589) #18	Ankrd27 (MGP_CAROLIEiJ_G0029590) #19	MGP_CAROLIEiJ_G0029591 #20	Dpy19l3 (MGP_CAROLIEiJ_G0029592)	Zfp507 (MGP_CAROLIEiJ_G0029593) #21	Tshz3 (MGP_CAROLIEiJ_G0029594) #22	Zfp536 (MGP_CAROLIEiJ_G0029595) #23	Uri1 (MGP_CAROLIEiJ_G0029596) #24	Ccne1 (MGP_CAROLIEiJ_G0029597) #25	MGP_CAROLIEiJ_G0029598 #26	Plekhf1 (MGP_CAROLIEiJ_G0029599) #27	Pop4 (MGP_CAROLIEiJ_G0029600) #28	Zfp619 (MGP_CAROLIEiJ_G0029602)	Vstm2b (MGP_CAROLIEiJ_G0029603) #29	AI987944 (MGP_CAROLIEiJ_G0029604)	MGP_CAROLIEiJ_G0029605	MGP_CAROLIEiJ_G0029606	Zfp788 (MGP_CAROLIEiJ_G0029608)	MGP_CAROLIEiJ_G0029610	MGP_CAROLIEiJ_G0029609	MGP_CAROLIEiJ_G0029611
Shrew mouse	MODERN SPECIES		Cebpa (MGP_PahariEiJ_G0012813) #7	Slc7a10 (MGP_PahariEiJ_G0012814) #8	Lrp3 (MGP_PahariEiJ_G0012815) #9	Gpatch1 (MGP_PahariEiJ_G0012816) #12	Rhpn2 (MGP_PahariEiJ_G0012817) #13	Faap24 (MGP_PahariEiJ_G0012818) #14	Cep89 (MGP_PahariEiJ_G0012819) #15	Slc7a9 (MGP_PahariEiJ_G0012820) #16	Tdrd12 (MGP_PahariEiJ_G0012821) #17	Nudt19 (MGP_PahariEiJ_G0012822)	Rgs9bp (MGP_PahariEiJ_G0012823) #18	Ankrd27 (MGP_PahariEiJ_G0012824) #19	MGP_PahariEiJ_G0012825 #20	Dpy19l3 (MGP_PahariEiJ_G0012826)	Zfp507 (MGP_PahariEiJ_G0012827) #21	Tshz3 (MGP_PahariEiJ_G0012828) #22	Zfp536 (MGP_PahariEiJ_G0012829) #23	Uri1 (MGP_PahariEiJ_G0012830) #24	Ccne1 (MGP_PahariEiJ_G0012831) #25	1600014C10Rik (MGP_PahariEiJ_G0012832) #26	Plekhf1 (MGP_PahariEiJ_G0012833) #27	MGP_PahariEiJ_G0012834	Vstm2b (MGP_PahariEiJ_G0012835) #29	MGP_PahariEiJ_G0012836	AI987944 (MGP_PahariEiJ_G0012838)	2610021A01Rik (MGP_PahariEiJ_G0012839)	MGP_PahariEiJ_G0012840	Zfp788 (MGP_PahariEiJ_G0012841)	MGP_PahariEiJ_G0012842	Siglecf (MGP_PahariEiJ_G0012843)	Siglecg (MGP_PahariEiJ_G0012844)
Rat	MODERN SPECIES		Wdr88 (ENSRNOG00000037393) #11	Gpatch1 (ENSRNOG00000011584) #12	Snrpg (ENSRNOG00000032232)	Rhpn2 (ENSRNOG00000011885) #13	Faap24 (ENSRNOG00000022393) #14	Cep89 (ENSRNOG00000012140) #15	Slc7a9 (ENSRNOG00000012344) #16	Tdrd12 (ENSRNOG00000012719) #17	AC136661.1 (ENSRNOG00000037380)	Nudt19 (ENSRNOG00000059386)	Rgs9bp (ENSRNOG00000012877) #18	Ankrd27 (ENSRNOG00000052814) #19	Pdcd5 (ENSRNOG00000068327) #20	Dpy19l3 (ENSRNOG00000021573)	Zfp507 (ENSRNOG00000013565) #21	Tshz3 (ENSRNOG00000013938) #22	RGD1562402 (ENSRNOG00000031859)	Zfp536 (ENSRNOG00000014163) #23	Uri1 (ENSRNOG00000014463) #24	Ccne1 (ENSRNOG00000014786) #25	LOC690000 (ENSRNOG00000014966) #26	Plekhf1 (ENSRNOG00000027724) #27	Pop4 (ENSRNOG00000027646) #28	Marf1-ps1 (ENSRNOG00000051237)	LOC690114 (ENSRNOG00000027370)	LOC365238 (ENSRNOG00000015168)	LOC108348090 (ENSRNOG00000067296)	Zfp939 (ENSRNOG00000064970)	Zfp619 (ENSRNOG00000066986)	LOC102548320 (ENSRNOG00000069276)	Cdc42se2 (ENSRNOG00000037364)
Upper Galilee mountains blind mole rat	MODERN SPECIES	458														Dpy19l3 (ENSNGAG00000010668)	Zfp507 (ENSNGAG00000010990) #21	Tshz3 (ENSNGAG00000011318) #22
Lesser Egyptian jerboa	MODERN SPECIES	73	Cebpg (ENSJJAG00000009499)	ENSJJAG00000014105 #7	Slc7a10 (ENSJJAG00000006090) #8	Lrp3 (ENSJJAG00000017356) #9	Gpatch1 (ENSJJAG00000023765) #12	Rhpn2 (ENSJJAG00000001747) #13	ENSJJAG00000012680 #14	Cep89 (ENSJJAG00000024207) #15	Slc7a9 (ENSJJAG00000014613) #16	ENSJJAG00000018149 #17	Rgs9bp (ENSJJAG00000012886) #18	Ankrd27 (ENSJJAG00000016506) #19	ENSJJAG00000016867 #20	Dpy19l3 (ENSJJAG00000011397)	ENSJJAG00000014559 #21	ENSJJAG00000018135 #22	Zfp536 (ENSJJAG00000005397) #23	Uri1 (ENSJJAG00000017190) #24	Ccne1 (ENSJJAG00000013552) #25	1600014C10Rik (ENSJJAG00000015651) #26	Plekhf1 (ENSJJAG00000011982) #27	Pop4 (ENSJJAG00000013376) #28	Vstm2b (ENSJJAG00000022517) #29	Rnf6 (ENSJJAG00000023994)	Cdk8 (ENSJJAG00000009532)	Wasf3 (ENSJJAG00000018294)	Gpr12 (ENSJJAG00000012507)	Usp12 (ENSJJAG00000019341)	Rasl11a (ENSJJAG00000020910)	Gtf3a (ENSJJAG00000011501)	Mtif3 (ENSJJAG00000013006)