Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407 #7	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085.nb #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT01050000244808.D.fb.b.a.a.a.b ##36	ENSGT01050000244808.D.fb.b.b.b ##36	ENSGT01050000244808.D.fb.b.a.b ##36	ENSGT00940000161974 #37	ENSGT01050000244808.D.fb.b.b.a ##36	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407 #7	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085.nb #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT01050000244808.D.fb.b.a.a.a.b ##36	ENSGT01050000244808.D.fb.b.b.b ##36	ENSGT01050000244808.D.fb.b.a.b ##36	ENSGT00940000161974 #37	ENSGT01050000244808.D.fb.b.b.a ##36	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Degu	MODERN SPECIES	124	ENSODEG00000014537 #7	ENSODEG00000020158 #8	RHPN2 (ENSODEG00000014557) #9	FAAP24 (ENSODEG00000013890) #10	CEP89 (ENSODEG00000014225) #11	ENSODEG00000015062 #12	ENSODEG00000014355 #13	TDRD12 (ENSODEG00000014443) #14	NUDT19 (ENSODEG00000014770) #15	RGS9BP (ENSODEG00000020326) #16	ANKRD27 (ENSODEG00000013621) #17	ENSODEG00000013248 #18	DPY19L3 (ENSODEG00000013833) #19	ENSODEG00000013993 #20	ENSODEG00000014205 #21	TSHZ3 (ENSODEG00000013840) #22	ZNF536 (ENSODEG00000013676) #23	URI1 (ENSODEG00000013616) #24	CCNE1 (ENSODEG00000014690) #25	ENSODEG00000020140 #26	C19orf12 (ENSODEG00000013188) #27	ENSODEG00000020216 #28	ENSODEG00000020166 #29	POP4 (ENSODEG00000013025) #30	VSTM2B (ENSODEG00000014510) #31	ENSODEG00000013453 #32	UQCRFS1 (ENSODEG00000014654) #33	ENSODEG00000014952 #34	ENSODEG00000020181 #35	ENSODEG00000014146 #36	CD5L (ENSODEG00000012955) #37
Long-tailed chinchilla	MODERN SPECIES	175	ATP4A (ENSCLAG00000013870)	HAUS5 (ENSCLAG00000011624)	RBM42 (ENSCLAG00000012865)	ETV2 (ENSCLAG00000011446) #7	RHPN2 (ENSCLAG00000011890) #9	FAAP24 (ENSCLAG00000013484) #10	ENSCLAG00000012488 #11	SLC7A9 (ENSCLAG00000012671) #12	TDRD12 (ENSCLAG00000012138) #14	NUDT19 (ENSCLAG00000015394) #15	RGS9BP (ENSCLAG00000017932) #16	ENSCLAG00000013353 #17	ENSCLAG00000014452 ##18	DPY19L3 (ENSCLAG00000013128) #19	ZNF507 (ENSCLAG00000012690) #20	TSHZ3 (ENSCLAG00000012902) #22	ZNF536 (ENSCLAG00000014818) #23	URI1 (ENSCLAG00000014617) #24	CCNE1 (ENSCLAG00000016202) #25	C19orf12 (ENSCLAG00000015360) #27	PLEKHF1 (ENSCLAG00000012584) #29	POP4 (ENSCLAG00000013162) #30	VSTM2B (ENSCLAG00000016538) #31	UQCRFS1 (ENSCLAG00000011437) #33	FCRL5 (ENSCLAG00000011767) ##36	FCRL3 (ENSCLAG00000012604) ##36	FCRL1 (ENSCLAG00000014567) ##36	CD5L (ENSCLAG00000015227) #37	ENSCLAG00000015395 ##36	KIRREL1 (ENSCLAG00000013814)	CD1D (ENSCLAG00000013027)
Guinea pig	MODERN SPECIES	56	RBM42 (ENSCPOG00000012365)	ENSCPOG00000013209 #7	RHPN2 (ENSCPOG00000011968) #9	FAAP24 (ENSCPOG00000011965) #10	CEP89 (ENSCPOG00000001470) #11	ENSCPOG00000011225 #12	ENSCPOG00000030866 #12	ENSCPOG00000034999 #12	TDRD12 (ENSCPOG00000002876) #14	NUDT19 (ENSCPOG00000038218) #15	RGS9BP (ENSCPOG00000000730) #16	ANKRD27 (ENSCPOG00000000160) #17	PDCD5 (ENSCPOG00000040356) #18	DPY19L3 (ENSCPOG00000012483) #19	ENSCPOG00000012473 #20	TSHZ3 (ENSCPOG00000003591) #22	ZNF536 (ENSCPOG00000008744) #23	URI1 (ENSCPOG00000004105) #24	CCNE1 (ENSCPOG00000004836) #25	C19orf12 (ENSCPOG00000021635) #27	PLEKHF1 (ENSCPOG00000036685) #29	POP4 (ENSCPOG00000002992) #30	VSTM2B (ENSCPOG00000022127) #31	UQCRFS1 (ENSCPOG00000038582) #33	ENSCPOG00000020010 ##36	ENSCPOG00000005105 ##36	FCRL1 (ENSCPOG00000031919) ##36	CD5L (ENSCPOG00000002911) #37	ENSCPOG00000001646 ##36	KIRREL1 (ENSCPOG00000004317)	ENSCPOG00000036278