Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407 #7	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085.nb #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT01050000244808.D.fb.b.a.a.a.b ##36	ENSGT01050000244808.D.fb.b.a.a.a.a ##36	ENSGT01050000244808.D.fb.b.b.b ##36	ENSGT01050000244808.D.fb.b.a.b ##36	ENSGT00940000161974 #37	ENSGT01050000244808.D.fb.b.b.a ##36	ENSGT00940000155795
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407 #7	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085.nb #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT01050000244808.D.fb.b.a.a.a.b ##36	ENSGT01050000244808.D.fb.b.b.b ##36	ENSGT01050000244808.D.fb.b.a.b ##36	ENSGT00940000161974 #37	ENSGT01050000244808.D.fb.b.b.a ##36	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000160297	ENSGT00390000012508	ENSGT00930000151055	ENSGT00940000162407 #7	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085.nb #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014 #33	ENSGT01050000244808.D.fb.b.a.a.a.b ##36	ENSGT01050000244808.D.fb.b.b.b ##36	ENSGT01050000244808.D.fb.b.a.b ##36	ENSGT00940000161974 #37	ENSGT01050000244808.D.fb.b.b.a ##36	ENSGT00940000155795	ENSGT01100000263475.d.a.h
Degu	MODERN SPECIES	124	ENSODEG00000014537 #7	ENSODEG00000020158 #8	RHPN2 (ENSODEG00000014557) #9	FAAP24 (ENSODEG00000013890) #10	CEP89 (ENSODEG00000014225) #11	ENSODEG00000015062 #12	ENSODEG00000014355 #13	TDRD12 (ENSODEG00000014443) #14	NUDT19 (ENSODEG00000014770) #15	RGS9BP (ENSODEG00000020326) #16	ANKRD27 (ENSODEG00000013621) #17	ENSODEG00000013248 #18	DPY19L3 (ENSODEG00000013833) #19	ENSODEG00000013993 #20	ENSODEG00000014205 #21	TSHZ3 (ENSODEG00000013840) #22	ZNF536 (ENSODEG00000013676) #23	URI1 (ENSODEG00000013616) #24	CCNE1 (ENSODEG00000014690) #25	ENSODEG00000020140 #26	C19orf12 (ENSODEG00000013188) #27	ENSODEG00000020216 #28	ENSODEG00000020166 #29	POP4 (ENSODEG00000013025) #30	VSTM2B (ENSODEG00000014510) #31	ENSODEG00000013453 #32	UQCRFS1 (ENSODEG00000014654) #33	ENSODEG00000014952 #34	ENSODEG00000020181 #35	ENSODEG00000014146 #36	CD5L (ENSODEG00000012955) #37
Long-tailed chinchilla	MODERN SPECIES	175	ATP4A (ENSCLAG00000013870)	HAUS5 (ENSCLAG00000011624)	RBM42 (ENSCLAG00000012865)	ETV2 (ENSCLAG00000011446) #7	RHPN2 (ENSCLAG00000011890) #9	FAAP24 (ENSCLAG00000013484) #10	ENSCLAG00000012488 #11	SLC7A9 (ENSCLAG00000012671) #12	TDRD12 (ENSCLAG00000012138) #14	NUDT19 (ENSCLAG00000015394) #15	RGS9BP (ENSCLAG00000017932) #16	ENSCLAG00000013353 #17	ENSCLAG00000014452 ##18	DPY19L3 (ENSCLAG00000013128) #19	ZNF507 (ENSCLAG00000012690) #20	TSHZ3 (ENSCLAG00000012902) #22	ZNF536 (ENSCLAG00000014818) #23	URI1 (ENSCLAG00000014617) #24	CCNE1 (ENSCLAG00000016202) #25	C19orf12 (ENSCLAG00000015360) #27	PLEKHF1 (ENSCLAG00000012584) #29	POP4 (ENSCLAG00000013162) #30	VSTM2B (ENSCLAG00000016538) #31	UQCRFS1 (ENSCLAG00000011437) #33	FCRL5 (ENSCLAG00000011767) ##36	FCRL3 (ENSCLAG00000012604) ##36	FCRL1 (ENSCLAG00000014567) ##36	CD5L (ENSCLAG00000015227) #37	ENSCLAG00000015395 ##36	KIRREL1 (ENSCLAG00000013814)	CD1D (ENSCLAG00000013027)
Guinea pig	MODERN SPECIES	56	RBM42 (ENSCPOG00000012365)	ENSCPOG00000013209 #7	RHPN2 (ENSCPOG00000011968) #9	FAAP24 (ENSCPOG00000011965) #10	CEP89 (ENSCPOG00000001470) #11	ENSCPOG00000011225 #12	ENSCPOG00000030866 #12	ENSCPOG00000034999 #12	TDRD12 (ENSCPOG00000002876) #14	NUDT19 (ENSCPOG00000038218) #15	RGS9BP (ENSCPOG00000000730) #16	ANKRD27 (ENSCPOG00000000160) #17	PDCD5 (ENSCPOG00000040356) #18	DPY19L3 (ENSCPOG00000012483) #19	ENSCPOG00000012473 #20	TSHZ3 (ENSCPOG00000003591) #22	ZNF536 (ENSCPOG00000008744) #23	URI1 (ENSCPOG00000004105) #24	CCNE1 (ENSCPOG00000004836) #25	C19orf12 (ENSCPOG00000021635) #27	PLEKHF1 (ENSCPOG00000036685) #29	POP4 (ENSCPOG00000002992) #30	VSTM2B (ENSCPOG00000022127) #31	UQCRFS1 (ENSCPOG00000038582) #33	ENSCPOG00000020010 ##36	ENSCPOG00000005105 ##36	FCRL1 (ENSCPOG00000031919) ##36	CD5L (ENSCPOG00000002911) #37	ENSCPOG00000001646 ##36	KIRREL1 (ENSCPOG00000004317)	ENSCPOG00000036278
Naked mole-rat female	MODERN SPECIES	20	RBM42 (ENSHGLG00000008418)	ENSHGLG00000006342 #7	ENSHGLG00000005491 #9	FAAP24 (ENSHGLG00000047787) #10	CEP89 (ENSHGLG00000015749) #11	TDRD12 (ENSHGLG00000015608) #14	ENSHGLG00000049663	ENSHGLG00000032764	ENSHGLG00000033957	RGS9BP (ENSHGLG00000043502) #16	ENSHGLG00000000739 #17	PDCD5 (ENSHGLG00000015879) #18	DPY19L3 (ENSHGLG00000008160) #19	ZNF507 (ENSHGLG00000014642) #20	ENSHGLG00000048014	TSHZ3 (ENSHGLG00000015820) #22	ZNF536 (ENSHGLG00000013749) #23	URI1 (ENSHGLG00000009294) #24	CCNE1 (ENSHGLG00000005512) #25	C19orf12 (ENSHGLG00000013665) #27	PLEKHF1 (ENSHGLG00000015663) #29	POP4 (ENSHGLG00000043121) #30	VSTM2B (ENSHGLG00000010328) #31	ENSHGLG00000034008	UQCRFS1 (ENSHGLG00000046640) #33	ENSHGLG00000049204 ##36	ENSHGLG00000005888 ##36	FCRL1 (ENSHGLG00000005552) ##36	CD5L (ENSHGLG00000006555) #37	ENSHGLG00000008016 ##36	ENSHGLG00000016598
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014.s #33	ENSGT00940000161310	ENSGT00940000163206.a	ENSGT00390000007315	ENSGT00390000007370	ENSGT00940000160007	ENSGT00390000009505	ENSGT00940000159061
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014.s #33
Marmotini_b	ANCESTRAL SPECIES	50	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31	ENSGT00390000001014.s #33
Arctic ground squirrel	MODERN SPECIES	86	ENSUPAG00010010556	SLC7A10 (ENSUPAG00010010545)	LRP3 (ENSUPAG00010010534)	ENSUPAG00010010532	ENSUPAG00010010526	GPATCH1 (ENSUPAG00010010496)	RHPN2 (ENSUPAG00010010489) #9	ENSUPAG00010010487 #10	CEP89 (ENSUPAG00010010410) #11	SLC7A9 (ENSUPAG00010010354) #12	TDRD12 (ENSUPAG00010010237) #14	RGS9BP (ENSUPAG00010010233) #16	ANKRD27 (ENSUPAG00010010181) #17	PDCD5 (ENSUPAG00010010174) #18	ZNF507 (ENSUPAG00010010113) #20	TSHZ3 (ENSUPAG00010010104) #22	ZNF536 (ENSUPAG00010010061) #23	URI1 (ENSUPAG00010010020) #24	CCNE1 (ENSUPAG00010010001) #25	C19orf12 (ENSUPAG00010009992) #27	PLEKHF1 (ENSUPAG00010009986) #29	POP4 (ENSUPAG00010009976) #30	VSTM2B (ENSUPAG00010009950) #31	UQCRFS1 (ENSUPAG00010009946) #33
Squirrel	MODERN SPECIES	170	CEBPG (ENSSTOG00000007596)	ENSSTOG00000027963	SLC7A10 (ENSSTOG00000009450)	LRP3 (ENSSTOG00000009443)	GPATCH1 (ENSSTOG00000003720)	RHPN2 (ENSSTOG00000002103) #9	CEP89 (ENSSTOG00000019373) #11	SLC7A9 (ENSSTOG00000013674) #12	TDRD12 (ENSSTOG00000013638) #14	ENSSTOG00000031724 #15	RGS9BP (ENSSTOG00000027616) #16	ANKRD27 (ENSSTOG00000013613) #17	PDCD5 (ENSSTOG00000025794) #18	DPY19L3 (ENSSTOG00000025908) #19	ZNF507 (ENSSTOG00000022278) #20	TSHZ3 (ENSSTOG00000024242) #22	ZNF536 (ENSSTOG00000013259) #23	URI1 (ENSSTOG00000009658) #24	CCNE1 (ENSSTOG00000009648) #25	C19orf12 (ENSSTOG00000020602) #27	PLEKHF1 (ENSSTOG00000023108) #29	POP4 (ENSSTOG00000011016) #30	VSTM2B (ENSSTOG00000020445) #31	ENSSTOG00000011909 #33
Alpin marmot	MODERN SPECIES	45	SLC7A10 (ENSMMMG00000006705)	LRP3 (ENSMMMG00000006727)	ENSMMMG00000006739	GPATCH1 (ENSMMMG00000006748)	RHPN2 (ENSMMMG00000006785) #9	FAAP24 (ENSMMMG00000006814) #10	CEP89 (ENSMMMG00000006832) #11	SLC7A9 (ENSMMMG00000007036) #12	TDRD12 (ENSMMMG00000007074) #14	NUDT19 (ENSMMMG00000007175) #15	RGS9BP (ENSMMMG00000007176) #16	ANKRD27 (ENSMMMG00000007203) #17	PDCD5 (ENSMMMG00000007305) #18	DPY19L3 (ENSMMMG00000007308) #19	ZNF507 (ENSMMMG00000007322) #20	TSHZ3 (ENSMMMG00000007335) #22	ZNF536 (ENSMMMG00000007356) #23	URI1 (ENSMMMG00000007374) #24	CCNE1 (ENSMMMG00000007385) #25	C19orf12 (ENSMMMG00000007391) #27	PLEKHF1 (ENSMMMG00000007421) #29	POP4 (ENSMMMG00000007446) #30	VSTM2B (ENSMMMG00000007454) #31
Eurasian red squirrel	MODERN SPECIES	8	SLC7A10 (ENSSVLG00005022473)	LRP3 (ENSSVLG00005022405)	WDR88 (ENSSVLG00005022304)	GPATCH1 (ENSSVLG00005022166)	RHPN2 (ENSSVLG00005022031) #9	ENSSVLG00005021973 #10	CEP89 (ENSSVLG00005021928) #11	SLC7A9 (ENSSVLG00005021851) #12	TDRD12 (ENSSVLG00005021333) #14	NUDT19 (ENSSVLG00005021230) #15	RGS9BP (ENSSVLG00005021208) #16	ANKRD27 (ENSSVLG00005021121) #17	ENSSVLG00005020933 #18	DPY19L3 (ENSSVLG00005020851) #19	ZNF507 (ENSSVLG00005020811) #20	TSHZ3 (ENSSVLG00005020787) #22	ZNF536 (ENSSVLG00005020746) #23	URI1 (ENSSVLG00005020418) #24	CCNE1 (ENSSVLG00005020303) #25	ENSSVLG00005020245 #27	PLEKHF1 (ENSSVLG00005020227) #29	POP4 (ENSSVLG00005020169) #30	VSTM2B (ENSSVLG00005020091) #31	ENSSVLG00005020050 #33	ENSSVLG00005020000	ENSSVLG00005019946	ENSSVLG00005019913	ENSSVLG00005019872	SHCBP1 (ENSSVLG00005019832)	ENSSVLG00005019566	VPS35 (ENSSVLG00005019175)
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31
Kangaroo rat	MODERN SPECIES	411	Cebpg (ENSDORG00000027852)	Cebpa (ENSDORG00000027904)	Slc7a10 (ENSDORG00000002321)	Lrp3 (ENSDORG00000002320)	Gpatch1 (ENSDORG00000012546)	Rhpn2 (ENSDORG00000010758) #9	Cep89 (ENSDORG00000013896) #11	Slc7a9 (ENSDORG00000026148) #12	Tdrd12 (ENSDORG00000012134) #14	ENSDORG00000026153 #15	Rgs9bp (ENSDORG00000015832) #16	Ankrd27 (ENSDORG00000001832) #17	Pdcd5 (ENSDORG00000023317) #18	Dpy19l3 (ENSDORG00000009853) #19	ENSDORG00000013877 #20	ENSDORG00000026232 #22	Zfp536 (ENSDORG00000015237) #23	Uri1 (ENSDORG00000012581) #24	Ccne1 (ENSDORG00000007955) #25	Uqcrfs1 (ENSDORG00000004134) #33
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31
Muroidea	ANCESTRAL SPECIES	18	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00940000161356 #31
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00390000014208	ENSGT00940000161356 #31	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000163087
Cricetidae	ANCESTRAL SPECIES	26	ENSGT00940000156469	ENSGT00940000160021	ENSGT00960000190924	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00390000014208	ENSGT00940000161356 #31	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000163087
Cricetidae_B	ANCESTRAL SPECIES	25	ENSGT00940000156469	ENSGT00940000160021	ENSGT00960000190924	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00390000014208	ENSGT00940000161356 #31	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000163087
Northern American deer mouse	MODERN SPECIES		Lrp3 (ENSPEMG00000000320)	ENSPEMG00000024856	Gpatch1 (ENSPEMG00000000636)	Rhpn2 (ENSPEMG00000020482) #9	Faap24 (ENSPEMG00000021083) #10	Cep89 (ENSPEMG00000020557) #11	Slc7a9 (ENSPEMG00000020346) #12	Tdrd12 (ENSPEMG00000009233) #14	ENSPEMG00000022578	Nudt19 (ENSPEMG00000020519) #15	Rgs9bp (ENSPEMG00000001852) #16	Ankrd27 (ENSPEMG00000020526) #17	Pdcd5 (ENSPEMG00000005766) #18	Dpy19l3 (ENSPEMG00000020636) #19	Zfp507 (ENSPEMG00000023579) #20	Tshz3 (ENSPEMG00000024219) #22	Zfp536 (ENSPEMG00000014198) #23	Uri1 (ENSPEMG00000021114) #24	Ccne1 (ENSPEMG00000020299) #25	1600014C10Rik (ENSPEMG00000030733) #27	ENSPEMG00000014034 #30	ENSPEMG00000026755	ENSPEMG00000019774	ENSPEMG00000026788	Vstm2b (ENSPEMG00000021557) #31	ENSPEMG00000024496	Zfp619 (ENSPEMG00000021007)	ENSPEMG00000024631	ENSPEMG00000027743	Plekhg2 (ENSPEMG00000017217)	Zfp36 (ENSPEMG00000007506)
Prairie vole	MODERN SPECIES	115	Slc7a10 (ENSMOCG00000020699)	Lrp3 (ENSMOCG00000007412)	Gpatch1 (ENSMOCG00000000174)	Rhpn2 (ENSMOCG00000015268) #9	Faap24 (ENSMOCG00000017357) #10	Cep89 (ENSMOCG00000000261) #11	Slc7a9 (ENSMOCG00000001789) #12	Tdrd12 (ENSMOCG00000002366) #14	Nudt19 (ENSMOCG00000017828) #15	Rgs9bp (ENSMOCG00000002309) #16	Ankrd27 (ENSMOCG00000013668) #17	ENSMOCG00000016930 #18	Dpy19l3 (ENSMOCG00000009571) #19	Zfp507 (ENSMOCG00000017422) #20	ENSMOCG00000015706	Tshz3 (ENSMOCG00000012794) #22	Zfp536 (ENSMOCG00000011684) #23	Uri1 (ENSMOCG00000018448) #24	Ccne1 (ENSMOCG00000008837) #25	1600014C10Rik (ENSMOCG00000007337) #27	Plekhf1 (ENSMOCG00000017276) #29
Cricetinae	ANCESTRAL SPECIES	39	ENSGT00940000162646	ENSGT00940000156469	ENSGT00940000160021	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30
Chinese hamster chok1gshd	MODERN SPECIES	282	Slc7a10 (ENSCGRG00001006085)	Lrp3 (ENSCGRG00001000089)	Gpatch1 (ENSCGRG00001016736)	Rhpn2 (ENSCGRG00001013772) #9	Faap24 (ENSCGRG00001012863) #10	ENSCGRG00001000081	Slc7a9 (ENSCGRG00001005745) #12	Tdrd12 (ENSCGRG00001021407) #14	Nudt19 (ENSCGRG00001017272) #15	Rgs9bp (ENSCGRG00001006642) #16	Ankrd27 (ENSCGRG00001018594) #17	ENSCGRG00001016049 #18	ENSCGRG00001014250	Dpy19l3 (ENSCGRG00001022217) #19	Zfp507 (ENSCGRG00001020787) #20	Tshz3 (ENSCGRG00001015566) #22	Zfp536 (ENSCGRG00001014547) #23	Uri1 (ENSCGRG00001019892) #24	Ccne1 (ENSCGRG00001015867) #25	1600014C10Rik (ENSCGRG00001014004) #27	Plekhf1 (ENSCGRG00001014179) #29	ENSCGRG00001012663	ENSCGRG00001013673
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00390000014208.y.b
Mus	ANCESTRAL SPECIES		ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728 #29	ENSGT00390000010067 #30	ENSGT00390000014208.y.b	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #31	ENSGT00390000014208.z	ENSGT00390000014208.y.a	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t	ENSGT00940000163075	ENSGT01080000257333.A.a.b.a.b.b.a.a.d.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728.e #29	ENSGT00390000010067 #30	ENSGT00390000014208.y.b	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #31	ENSGT00390000014208.z	ENSGT00390000014208.y.a	ENSGT00940000154469.a.a.b.b.b	ENSGT00950000183069.b.b.a.a.e.a.a.b.a.b.b	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t
Mus_B	ANCESTRAL SPECIES		ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728.e #29	ENSGT00390000010067 #30	ENSGT00390000014208.y.b.a	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #31	ENSGT00390000014208.z	ENSGT00390000014208.y.a.a.a	ENSGT00940000154469.a.a.b.b.b	ENSGT00950000183069.b.b.a.a.e.a.a.b.a.b.b	ENSGT00940000153165.a.a.c.b.a.b.a	ENSGT00940000155965.t
Mus_C	ANCESTRAL SPECIES	32	ENSGT00940000156469	ENSGT00940000160021	ENSGT00940000162291	ENSGT00390000007074	ENSGT00940000153837.a.b #9	ENSGT00390000009456 #10	ENSGT00390000018876 #11	ENSGT00940000156370 #12	ENSGT00420000029847 #14	ENSGT00420000029858 #15	ENSGT00940000153725.a.b.a #16	ENSGT00940000157021 #17	ENSGT00390000011085 #18	ENSGT00530000063023.A.a #19	ENSGT00490000043434 #20	ENSGT00950000183051.b.a #22	ENSGT00940000156397.a.a #23	ENSGT00390000002362 #24	ENSGT00940000156256 #25	ENSGT00390000009077 #27	ENSGT00940000160728.e #29	ENSGT00390000010067 #30	ENSGT01030000234576.D.a.b.b.b.g.b	ENSGT00940000161356 #31	ENSGT00940000154469.a.a.b.b.b
spretus	MODERN SPECIES	16	Cebpg (MGP_SPRETEiJ_G0030677)	Cebpa (MGP_SPRETEiJ_G0030678)	Slc7a10 (MGP_SPRETEiJ_G0030679)	Lrp3 (MGP_SPRETEiJ_G0030680)	Gpatch1 (MGP_SPRETEiJ_G0030681)	Rhpn2 (MGP_SPRETEiJ_G0030682) #9	Faap24 (MGP_SPRETEiJ_G0030683) #10	Cep89 (MGP_SPRETEiJ_G0030684) #11	Slc7a9 (MGP_SPRETEiJ_G0030685) #12	Tdrd12 (MGP_SPRETEiJ_G0030686) #14	Rgs9bp (MGP_SPRETEiJ_G0030688) #16	Ankrd27 (MGP_SPRETEiJ_G0030689) #17	Pdcd5 (MGP_SPRETEiJ_G0030690) #18	Dpy19l3 (MGP_SPRETEiJ_G0030691) #19	Zfp507 (MGP_SPRETEiJ_G0030692) #20	Tshz3 (MGP_SPRETEiJ_G0030693) #22	Zfp536 (MGP_SPRETEiJ_G0030694) #23	Uri1 (MGP_SPRETEiJ_G0030695) #24	Ccne1 (MGP_SPRETEiJ_G0030696) #25	1600014C10Rik (MGP_SPRETEiJ_G0030697) #27	Plekhf1 (MGP_SPRETEiJ_G0030698) #29	Pop4 (MGP_SPRETEiJ_G0030699) #30	MGP_SPRETEiJ_G0030700	Zfp619 (MGP_SPRETEiJ_G0030701)	Vstm2b (MGP_SPRETEiJ_G0030702) #31	AI987944 (MGP_SPRETEiJ_G0030703)	AW146154 (MGP_SPRETEiJ_G0030704)	MGP_SPRETEiJ_G0030705	MGP_SPRETEiJ_G0030706	Zfp788 (MGP_SPRETEiJ_G0030707)	MGP_SPRETEiJ_G0030708
Steppe mouse	MODERN SPECIES	3056										ENSMSIG00000018080 #15	Rgs9bp (ENSMSIG00000018095) #16	Ankrd27 (ENSMSIG00000018102) #17	Pdcd5 (ENSMSIG00000018284) #18	Dpy19l3 (ENSMSIG00000018318) #19	Zfp507 (ENSMSIG00000018409) #20	Tshz3 (ENSMSIG00000018467) #22
Mouse	MODERN SPECIES	16	Slc7a10 (ENSMUSG00000030495)	Lrp3 (ENSMUSG00000001802)	Wdr88 (ENSMUSG00000118454)	Gpatch1 (ENSMUSG00000063808)	Rhpn2 (ENSMUSG00000030494) #9	Faap24 (ENSMUSG00000030493) #10	Cep89 (ENSMUSG00000023072) #11	Slc7a9 (ENSMUSG00000030492) #12	Tdrd12 (ENSMUSG00000030491) #14	Nudt19 (ENSMUSG00000034875) #15	Rgs9bp (ENSMUSG00000056043) #16	Ankrd27 (ENSMUSG00000034867) #17	Pdcd5 (ENSMUSG00000030417) #18	Dpy19l3 (ENSMUSG00000043671) #19	Zfp507 (ENSMUSG00000044452) #20	Tshz3 (ENSMUSG00000021217) #22	Zfp536 (ENSMUSG00000043456) #23	Uri1 (ENSMUSG00000030421) #24	Ccne1 (ENSMUSG00000002068) #25	1600014C10Rik (ENSMUSG00000054676) #27	Plekhf1 (ENSMUSG00000074170) #29	Pop4 (ENSMUSG00000030423) #30	Gm5591 (ENSMUSG00000060565)	Gm5114 (ENSMUSG00000053742)	Zfp619 (ENSMUSG00000068959)	Vstm2b (ENSMUSG00000039257) #31	4930433I11Rik (ENSMUSG00000091692)	Gm4884 (ENSMUSG00000048312)	Gm5592 (ENSMUSG00000072259)	AI987944 (ENSMUSG00000056383)	Vmn2r57 (ENSMUSG00000066537)
Ryukyu mouse	MODERN SPECIES	16	Cebpa (MGP_CAROLIEiJ_G0029579)	Slc7a10 (MGP_CAROLIEiJ_G0029580)	Lrp3 (MGP_CAROLIEiJ_G0029581)	Gpatch1 (MGP_CAROLIEiJ_G0029582)	Rhpn2 (MGP_CAROLIEiJ_G0029583) #9	Faap24 (MGP_CAROLIEiJ_G0029584) #10	Cep89 (MGP_CAROLIEiJ_G0029585) #11	Slc7a9 (MGP_CAROLIEiJ_G0029586) #12	Tdrd12 (MGP_CAROLIEiJ_G0029587) #14	Nudt19 (MGP_CAROLIEiJ_G0029588) #15	Rgs9bp (MGP_CAROLIEiJ_G0029589) #16	Ankrd27 (MGP_CAROLIEiJ_G0029590) #17	MGP_CAROLIEiJ_G0029591 #18	Dpy19l3 (MGP_CAROLIEiJ_G0029592) #19	Zfp507 (MGP_CAROLIEiJ_G0029593) #20	Tshz3 (MGP_CAROLIEiJ_G0029594) #22	Zfp536 (MGP_CAROLIEiJ_G0029595) #23	Uri1 (MGP_CAROLIEiJ_G0029596) #24	Ccne1 (MGP_CAROLIEiJ_G0029597) #25	MGP_CAROLIEiJ_G0029598 #27	Plekhf1 (MGP_CAROLIEiJ_G0029599) #29	Pop4 (MGP_CAROLIEiJ_G0029600) #30	Zfp619 (MGP_CAROLIEiJ_G0029602)	Vstm2b (MGP_CAROLIEiJ_G0029603) #31	AI987944 (MGP_CAROLIEiJ_G0029604)	MGP_CAROLIEiJ_G0029605	MGP_CAROLIEiJ_G0029606	Zfp788 (MGP_CAROLIEiJ_G0029608)	MGP_CAROLIEiJ_G0029610	MGP_CAROLIEiJ_G0029609	MGP_CAROLIEiJ_G0029611
Shrew mouse	MODERN SPECIES		Cebpa (MGP_PahariEiJ_G0012813)	Slc7a10 (MGP_PahariEiJ_G0012814)	Lrp3 (MGP_PahariEiJ_G0012815)	Gpatch1 (MGP_PahariEiJ_G0012816)	Rhpn2 (MGP_PahariEiJ_G0012817) #9	Faap24 (MGP_PahariEiJ_G0012818) #10	Cep89 (MGP_PahariEiJ_G0012819) #11	Slc7a9 (MGP_PahariEiJ_G0012820) #12	Tdrd12 (MGP_PahariEiJ_G0012821) #14	Nudt19 (MGP_PahariEiJ_G0012822) #15	Rgs9bp (MGP_PahariEiJ_G0012823) #16	Ankrd27 (MGP_PahariEiJ_G0012824) #17	MGP_PahariEiJ_G0012825 #18	Dpy19l3 (MGP_PahariEiJ_G0012826) #19	Zfp507 (MGP_PahariEiJ_G0012827) #20	Tshz3 (MGP_PahariEiJ_G0012828) #22	Zfp536 (MGP_PahariEiJ_G0012829) #23	Uri1 (MGP_PahariEiJ_G0012830) #24	Ccne1 (MGP_PahariEiJ_G0012831) #25	1600014C10Rik (MGP_PahariEiJ_G0012832) #27	Plekhf1 (MGP_PahariEiJ_G0012833) #29	MGP_PahariEiJ_G0012834	Vstm2b (MGP_PahariEiJ_G0012835) #31	MGP_PahariEiJ_G0012836	AI987944 (MGP_PahariEiJ_G0012838)	2610021A01Rik (MGP_PahariEiJ_G0012839)	MGP_PahariEiJ_G0012840	Zfp788 (MGP_PahariEiJ_G0012841)	MGP_PahariEiJ_G0012842	Siglecf (MGP_PahariEiJ_G0012843)	Siglecg (MGP_PahariEiJ_G0012844)
Rat	MODERN SPECIES		Wdr88 (ENSRNOG00000037393)	Gpatch1 (ENSRNOG00000011584)	Snrpg (ENSRNOG00000032232)	Rhpn2 (ENSRNOG00000011885) #9	Faap24 (ENSRNOG00000022393) #10	Cep89 (ENSRNOG00000012140) #11	Slc7a9 (ENSRNOG00000012344) #12	Tdrd12 (ENSRNOG00000012719) #14	AC136661.1 (ENSRNOG00000037380)	Nudt19 (ENSRNOG00000059386) #15	Rgs9bp (ENSRNOG00000012877) #16	Ankrd27 (ENSRNOG00000052814) #17	Pdcd5 (ENSRNOG00000068327) #18	Dpy19l3 (ENSRNOG00000021573) #19	Zfp507 (ENSRNOG00000013565) #20	Tshz3 (ENSRNOG00000013938) #22	RGD1562402 (ENSRNOG00000031859)	Zfp536 (ENSRNOG00000014163) #23	Uri1 (ENSRNOG00000014463) #24	Ccne1 (ENSRNOG00000014786) #25	LOC690000 (ENSRNOG00000014966) #27	Plekhf1 (ENSRNOG00000027724) #29	Pop4 (ENSRNOG00000027646) #30	Marf1-ps1 (ENSRNOG00000051237)	LOC690114 (ENSRNOG00000027370)	LOC365238 (ENSRNOG00000015168)	LOC108348090 (ENSRNOG00000067296)	Zfp939 (ENSRNOG00000064970)	Zfp619 (ENSRNOG00000066986)	LOC102548320 (ENSRNOG00000069276)	Cdc42se2 (ENSRNOG00000037364)
Upper Galilee mountains blind mole rat	MODERN SPECIES	458														Dpy19l3 (ENSNGAG00000010668) #19	Zfp507 (ENSNGAG00000010990) #20	Tshz3 (ENSNGAG00000011318) #22
Lesser Egyptian jerboa	MODERN SPECIES	73	Cebpg (ENSJJAG00000009499)	ENSJJAG00000014105	Slc7a10 (ENSJJAG00000006090)	Lrp3 (ENSJJAG00000017356)	Gpatch1 (ENSJJAG00000023765)	Rhpn2 (ENSJJAG00000001747) #9	ENSJJAG00000012680 #10	Cep89 (ENSJJAG00000024207) #11	Slc7a9 (ENSJJAG00000014613) #12	ENSJJAG00000018149 #14	Rgs9bp (ENSJJAG00000012886) #16	Ankrd27 (ENSJJAG00000016506) #17	ENSJJAG00000016867 #18	Dpy19l3 (ENSJJAG00000011397) #19	ENSJJAG00000014559 #20	ENSJJAG00000018135 #22	Zfp536 (ENSJJAG00000005397) #23	Uri1 (ENSJJAG00000017190) #24	Ccne1 (ENSJJAG00000013552) #25	1600014C10Rik (ENSJJAG00000015651) #27	Plekhf1 (ENSJJAG00000011982) #29	Pop4 (ENSJJAG00000013376) #30	Vstm2b (ENSJJAG00000022517) #31	Rnf6 (ENSJJAG00000023994)	Cdk8 (ENSJJAG00000009532)	Wasf3 (ENSJJAG00000018294)	Gpr12 (ENSJJAG00000012507)	Usp12 (ENSJJAG00000019341)	Rasl11a (ENSJJAG00000020910)	Gtf3a (ENSJJAG00000011501)	Mtif3 (ENSJJAG00000013006)