Cyprinoidei	ANCESTRAL SPECIES	32							ENSGT00530000063735.b	ENSGT00940000158064	ENSGT00940000160326.d	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472 #26	ENSGT00940000153394.c.a #27	ENSGT00940000166296 #28	ENSGT00950000183145.A.b.b #29	ENSGT00940000155472.a.a #30	ENSGT00720000108868 #31	ENSGT00390000006665.b.h	ENSGT00940000164289.a #32	ENSGT01050000244850.A.a.o.a #33	ENSGT00940000156776.c	ENSGT00940000155869 #35	ENSGT00390000011863.c #36
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	111	ENSGT00940000156639.c.a	ENSGT00950000183047.d.f.h	ENSGT00940000154745.a	ENSGT00940000158634.a.b	ENSGT00390000005811.`b	ENSGT00940000156639.c.b	ENSGT00940000157654.d	ENSGT00530000063735.b.c	ENSGT00940000158064.i	ENSGT00940000158947.a	ENSGT00950000183011.c.a.a.g	ENSGT00950000182931.B.a.b.d #18	ENSGT00390000014494.ac #19	ENSGT00940000156361.B.a #20	ENSGT00390000003344.b #21	ENSGT00940000166498.f #22	ENSGT00940000155056.a.b #23	ENSGT00940000159584.h #24	ENSGT00940000160682.a.a.b #25	ENSGT00940000157472.a #26	ENSGT00940000153394.c.a.a #27	ENSGT00940000166296.b #28	ENSGT00950000183145.A.b.b.b #29	ENSGT00940000155472.a.a.b #30	ENSGT00720000108868.d #31	ENSGT00940000164289.a.b #32	ENSGT01050000244850.A.a.o.a.d #33	ENSGT00940000155869.d #35	ENSGT00390000011863.c.p ##36	ENSGT00950000182827.B.d #37	ENSGT00940000163427.c.ab.a
Goldfish	MODERN SPECIES	1857												DENND2C (ENSCARG00000040328) #18	bcas2 (ENSCARG00000040369) #19	trim33 (ENSCARG00000040523) #20	slc66a1 (ENSCARG00000042943) #21	nr1h5 (ENSCARG00000042964) #22	BRPF3 (ENSCARG00000043076) #23	ENSCARG00000044137 #24	ENSCARG00000044217 #25	TBC1D22B (ENSCARG00000044309) #26	pim1 (ENSCARG00000046776) #27	ENSCARG00000046788 #28	ENSCARG00000046795 #29	kcnd1 (ENSCARG00000046801) #30	gripap1 (ENSCARG00000046818) #31	ptpn18 (ENSCARG00000046896) #32	plxna3 (ENSCARG00000046997) #33	ENSCARG00000047350 #34	slc6a8 (ENSCARG00000047363) #35	bcap31 (ENSCARG00000047662) #36	slc35a2 (ENSCARG00000047678) #37
Cyprininae_a	ANCESTRAL SPECIES	111	ENSGT00950000183047.d.f.g	ENSGT00950000183047.d.f.h	ENSGT00940000154745.a	ENSGT00940000158634.a.b	ENSGT00390000005811.`b	ENSGT00940000156639.c.b	ENSGT00940000157654.d	ENSGT00530000063735.b.c	ENSGT00940000158064.i	ENSGT00940000160326.d	ENSGT00940000158947.a	ENSGT00950000183011.c.a.a.g	ENSGT00950000182931.B.a.b.d #18	ENSGT00390000014494.ac #19	ENSGT00940000156361.B.a #20	ENSGT00940000166498.f #22	ENSGT00940000155056.a.b #23	ENSGT00940000159584.h #24	ENSGT00940000160682.a.a.b #25	ENSGT00940000157472.a #26	ENSGT00940000153394.c.a.a #27	ENSGT00940000166296.b #28	ENSGT00950000183145.A.b.b.b #29	ENSGT00940000155472.a.a.b #30	ENSGT00720000108868.d #31	ENSGT00940000164289.a.b #32	ENSGT01050000244850.A.a.o.a.d #33	ENSGT00940000155869.d #35	ENSGT00390000011863.c.p ##36	ENSGT00950000182827.B.d #37	ENSGT00940000158963.b.b.a
Common carp reference	MODERN SPECIES	17	anapc7 (ENSCCRG00000026623)	fnbp1a (ENSCCRG00000026770)	atp2a2a (ENSCCRG00000056384)	si:ch211-248e11.2 (ENSCCRG00000074812)	tjp2b (ENSCCRG00000031373)	fxn (ENSCCRG00000053463)	pip5k1bb (ENSCCRG00000027636)	unc45b (ENSCCRG00000023097)	ENSCCRG00000067607	plekha2 (ENSCCRG00000020058)	ENSCCRG00000020061	ampd1 (ENSCCRG00000039722)	DENND2C (ENSCCRG00000039666) #18	bcas2 (ENSCCRG00000064476) #19	trim33 (ENSCCRG00000029494) #20	nr1h5 (ENSCCRG00000039614) #22	ENSCCRG00000039605 #23	ENSCCRG00000075014 #24	ENSCCRG00000076474 #25	ENSCCRG00000079299 #26	pim1 (ENSCCRG00000075335) #27	ENSCCRG00000064380 #28	ENSCCRG00000014243 #29	kcnd1 (ENSCCRG00000053667) #30	gripap1 (ENSCCRG00000005400) #31	ptpn18 (ENSCCRG00000005561) #32	plxna3 (ENSCCRG00000066638) #33	ENSCCRG00000033025	slc6a8 (ENSCCRG00000033069) #35	slc35a2 (ENSCCRG00000081173) #37	otud5a (ENSCCRG00000077446)
Golden-line barbel	MODERN SPECIES	1522												bcas2 (ENSSGRG00000020782) #19	trim33 (ENSSGRG00000020794) #20	ENSSGRG00000021216	ENSSGRG00000021217	nr1h5 (ENSSGRG00000021218) #22	BRPF3 (ENSSGRG00000021219) #23	MAPK13 (ENSSGRG00000021220) #24
Cyprininae	ANCESTRAL SPECIES	134						ENSGT00940000157654.c	ENSGT00530000063735.b.d	ENSGT00940000158064.j	ENSGT00940000160326.d	ENSGT00940000158947.b	ENSGT00950000183011.c.a.a.h	ENSGT00950000182931.B.a.b.c ##18	ENSGT00390000014494.bc ##19	ENSGT00940000156361.B.b ##20	ENSGT00390000003344.a ##21	ENSGT00940000166498.e ##22	ENSGT00940000155056.a.a ##23	ENSGT00940000159584.g ##24	ENSGT00940000160682.a.a.a ##25	ENSGT00940000160682.a.b ##25	ENSGT00940000157472.b ##26	ENSGT00940000153394.c.a.b ##27	ENSGT00940000166296.a ##28	ENSGT00940000155472.a.a.a ##30	ENSGT00720000108868.c ##31	ENSGT00390000006665.b.h	ENSGT00940000164289.a.a ##32	ENSGT01050000244850.A.a.o.a.c ##33	ENSGT00940000156776.c	ENSGT00940000155869.c ##35	ENSGT00390000011863.c.o.a ##36
Goldfish	MODERN SPECIES	48	ENSCARG00000009883	ENSCARG00000009888	fxn (ENSCARG00000009895)	pip5k1bb (ENSCARG00000009903)	ENSCARG00000009958	unc45b (ENSCARG00000009965)	ENSCARG00000009988	plekha2 (ENSCARG00000010052)	ASB13 (ENSCARG00000010058)	nras (ENSCARG00000010067)	ampd1 (ENSCARG00000010146)	DENND2C (ENSCARG00000012559) ##18	bcas2 (ENSCARG00000012570) ##19	trim33 (ENSCARG00000012635) ##20	slc66a1 (ENSCARG00000014370) ##21	nr1h5 (ENSCARG00000014410) ##22	BRPF3 (ENSCARG00000006032) ##23	MAPK13 (ENSCARG00000006095) ##24	ENSCARG00000006235 ##25	TBC1D22B (ENSCARG00000006284) ##26	pim1 (ENSCARG00000006574) ##27	ENSCARG00000006622 ##28	ENSCARG00000006645	ENSCARG00000006650 ##29	kcnd1 (ENSCARG00000006660) ##30	gripap1 (ENSCARG00000006684) ##31	MON1B (ENSCARG00000006753)	ptpn18 (ENSCARG00000006767) ##32	plxna3 (ENSCARG00000006861) ##33	ENSCARG00000007441	slc6a8 (ENSCARG00000007521) ##35
Cyprininae_a	ANCESTRAL SPECIES	258			ENSGT00940000158634.a.a	ENSGT00390000005811.ab	ENSGT00940000156639.c.a	ENSGT00940000157654.c	ENSGT00530000063735.b.d	ENSGT00940000158064.j	ENSGT00940000165059.B.a	ENSGT00940000158947.b	ENSGT00950000183011.c.a.a.h	ENSGT00950000182931.B.a.b.c ##18	ENSGT00390000014494.bc ##19	ENSGT00940000156361.B.b ##20	ENSGT00390000003344.a ##21	ENSGT00940000166498.e ##22	ENSGT00940000155056.a.a ##23	ENSGT00940000159584.g ##24	ENSGT00940000160682.a.a.a ##25	ENSGT00940000160682.a.b ##25	ENSGT00940000157472.b ##26	ENSGT00940000153394.c.a.b ##27	ENSGT00940000166296.a ##28	ENSGT00940000155472.a.a.a ##30	ENSGT00720000108868.c ##31	ENSGT00390000006665.b.h	ENSGT00940000164289.a.a ##32	ENSGT01050000244850.A.a.o.a.c ##33	ENSGT00940000156776.c	ENSGT00940000155869.c ##35	ENSGT00390000011863.c.o.a ##36
Common carp reference	MODERN SPECIES	23	anapc7 (ENSCCRG00000047366)	atp2a2a (ENSCCRG00000047376)	ift81 (ENSCCRG00000025834)	fnbp1a (ENSCCRG00000025912)	tjp2b (ENSCCRG00000017522)	fxn (ENSCCRG00000027661)	pip5k1bb (ENSCCRG00000050000)	unc45b (ENSCCRG00000049038)	ENSCCRG00000063487	ENSCCRG00000048983	ampd1 (ENSCCRG00000047768)	DENND2C (ENSCCRG00000047745) ##18	bcas2 (ENSCCRG00000002803) ##19	trim33 (ENSCCRG00000039631) ##20	slc66a1 (ENSCCRG00000039619) ##21	nr1h5 (ENSCCRG00000033773) ##22	ENSCCRG00000080148 ##23	ENSCCRG00000033781 ##24	ENSCCRG00000033784 ##25	ENSCCRG00000014422 ##26	ENSCCRG00000061039	pim1 (ENSCCRG00000065822) ##27	ENSCCRG00000077067 ##28	kcnd1 (ENSCCRG00000082259) ##30	gripap1 (ENSCCRG00000054385) ##31	ENSCCRG00000079483	ptpn18 (ENSCCRG00000059436) ##32	plxna3 (ENSCCRG00000051129) ##33	ENSCCRG00000051042	slc6a8 (ENSCCRG00000035629) ##35	bcap31 (ENSCCRG00000035634) ##36
Golden-line barbel	MODERN SPECIES	258	ift81 (ENSSGRG00000025431)	fnbp1a (ENSSGRG00000025396)	tjp2b (ENSSGRG00000025325)	fxn (ENSSGRG00000025323)	pip5k1bb (ENSSGRG00000025322)	unc45b (ENSSGRG00000025321)	ENSSGRG00000025311	plekha2 (ENSSGRG00000025304)	ENSSGRG00000025302	nras (ENSSGRG00000025220)	ampd1 (ENSSGRG00000024995)	DENND2C (ENSSGRG00000024986) ##18	bcas2 (ENSSGRG00000024983) ##19	trim33 (ENSSGRG00000024119) ##20	slc66a1 (ENSSGRG00000024111) ##21	nr1h5 (ENSSGRG00000024110) ##22	BRPF3 (ENSSGRG00000024044) ##23	MAPK13 (ENSSGRG00000023927) ##24	ENSSGRG00000023925 ##25	TBC1D22B (ENSSGRG00000023847) ##26	pim1 (ENSSGRG00000023841) ##27
Zebrafish	MODERN SPECIES	23	si:ch211-248e11.2 (ENSDARG00000058940)	tjp2b (ENSDARG00000023443)	fxn (ENSDARG00000074356)	pip5k1bb (ENSDARG00000006508)	unc45b (ENSDARG00000008433)	ENSDARG00000074168	plekha2 (ENSDARG00000078221)	ASB13 (ENSDARG00000089833)	nras (ENSDARG00000038225)	ampd1 (ENSDARG00000033832)	DENND2C (ENSDARG00000073738) #18	bcas2 (ENSDARG00000043631) #19	trim33 (ENSDARG00000016181) #20	slc66a1 (ENSDARG00000043624) #21	ENSDARG00000117077	nr1h5 (ENSDARG00000031046) #22	BRPF3 (ENSDARG00000074238) #23	ENSDARG00000058470 #24	ENSDARG00000068100 #25	TBC1D22B (ENSDARG00000026988) #26	pim1 (ENSDARG00000100020) #27	ENSDARG00000058944 #28	ENSDARG00000069542 #29	kcnd1 (ENSDARG00000074746) #30	gripap1 (ENSDARG00000063069) #31	MON1B (ENSDARG00000035686)	ptpn18 (ENSDARG00000006308) #32	plxna3 (ENSDARG00000007172) #33	ENSDARG00000043648	slc6a8 (ENSDARG00000043646) #35	bcap31 (ENSDARG00000044972) #36