Osteoglossocephalai	ANCESTRAL SPECIES	218	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00390000016392 #18	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT01010000222287.A	ENSGT00390000018003.a #36	ENSGT00390000016950 #35	ENSGT00950000182839.B.a.b #34	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22
Clupeocephala	ANCESTRAL SPECIES	57	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT01010000222287.A	ENSGT00940000168345 #37	ENSGT00390000018003.a #36	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25
Euteleosteomorpha	ANCESTRAL SPECIES	61	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT01010000222287.A	ENSGT00940000168345 #37	ENSGT00390000018003.a #36	ENSGT00390000016950 #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00760000119531	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30
Acanthomorphata	ANCESTRAL SPECIES	255													ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00760000119531	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00390000010674.b	ENSGT00940000164106	ENSGT00950000183106.b	ENSGT00940000165103.a	ENSGT00940000157087.a.b	ENSGT00500000045021.d	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Percomorphaceae	ANCESTRAL SPECIES	25							ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Cichlidae	ANCESTRAL SPECIES		ENSGT01030000234571.b.b.b.a.b	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000157014.e #7	ENSGT00390000000546 #8	ENSGT00940000159472 #9	ENSGT01050000244866.D.b.b #10	ENSGT00390000006931 #11	ENSGT00940000159381.c #12	ENSGT01010000223665 #13	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Nile tilapia	MODERN SPECIES	12	itchb (ENSONIG00000009204) #7	znf341 (ENSONIG00000009210) #8	e2f1 (ENSONIG00000009212) #9	ENSONIG00000009213 #10	ctnnbl1 (ENSONIG00000009214) #11	VSTM2L (ENSONIG00000041739) #12	ENSONIG00000028043 #13	szrd1 (ENSONIG00000009217) #14	atp13a2 (ENSONIG00000009218) #15	SDHB (ENSONIG00000009225) #16	TMEM240 (ENSONIG00000009232) #17	otud3 (ENSONIG00000009233) #18	bcas2 (ENSONIG00000009234) #19	trim33 (ENSONIG00000009236) #20	slc66a1 (ENSONIG00000009250) #21	nr1h5 (ENSONIG00000009252) #22	BRPF3 (ENSONIG00000032735) #23	ENSONIG00000009265 #24	ENSONIG00000037033 #25	angptl7 (ENSONIG00000009286) #26	mtor (ENSONIG00000009275) #27	agrn (ENSONIG00000009289) #28	ptpn11b (ENSONIG00000009293) #29	RNF223 (ENSONIG00000009295) #30	ENSONIG00000034111 #31	DENND2C (ENSONIG00000009297) #32	ampd1 (ENSONIG00000009299) #33	ENSONIG00000041385 #34	csde1 (ENSONIG00000009309) #35	SIKE1 (ENSONIG00000009319) #36	ENSONIG00000035010 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	17	ENSGT00940000157014.e #7	ENSGT00390000000546 #8	ENSGT00940000159472 #9	ENSGT01050000244866.D.b.b #10	ENSGT00390000006931 #11	ENSGT00940000159381.c #12	ENSGT01010000223665 #13	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Haplochromini	ANCESTRAL SPECIES	18	ENSGT00940000157014.e #7	ENSGT00390000000546 #8	ENSGT00940000159472 #9	ENSGT01050000244866.D.b.b #10	ENSGT00390000006931 #11	ENSGT00940000159381.c #12	ENSGT01010000223665 #13	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Haplochromini_A	ANCESTRAL SPECIES	22	ENSGT00940000157014.e #7	ENSGT00390000000546 #8	ENSGT00940000159472 #9	ENSGT01050000244866.D.b.b #10	ENSGT00390000006931 #11	ENSGT00940000159381.c #12	ENSGT01010000223665 #13	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a.e #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Haplochromini_B	ANCESTRAL SPECIES	103	ENSGT00940000157014.e #7	ENSGT00390000000546 #8	ENSGT00940000159472 #9	ENSGT01050000244866.D.b.b #10	ENSGT00390000006931 #11	ENSGT00940000159381.c #12	ENSGT01010000223665 #13	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24
Zebra mbuna	MODERN SPECIES	395											otud3 (ENSMZEG00005028489) #18	bcas2 (ENSMZEG00005028487) #19	ENSMZEG00005028486	trim33 (ENSMZEG00005028485) #20	slc66a1 (ENSMZEG00005028484) #21	nr1h5 (ENSMZEG00005028483) #22	BRPF3 (ENSMZEG00005028482) #23	MAPK13 (ENSMZEG00005028481) #24
Eastern happy	MODERN SPECIES	12	ENSACLG00000014422 #10	ctnnbl1 (ENSACLG00000014515) #11	ENSACLG00000014560	ENSACLG00000014582	ENSACLG00000014608 #12	ENSACLG00000014645 #13	szrd1 (ENSACLG00000014655) #14	atp13a2 (ENSACLG00000014670) #15	SDHB (ENSACLG00000014799) #16	TMEM240 (ENSACLG00000014831) #17	otud3 (ENSACLG00000014844) #18	bcas2 (ENSACLG00000014864) #19	ENSACLG00000014902	trim33 (ENSACLG00000014913) #20	slc66a1 (ENSACLG00000015090) #21	nr1h5 (ENSACLG00000015116) #22	ENSACLG00000015142	BRPF3 (ENSACLG00000015149) #23	MAPK13 (ENSACLG00000015248) #24	cdk11b (ENSACLG00000015393)	MMP23B (ENSACLG00000015649)	ubiad1 (ENSACLG00000015663)	mib2 (ENSACLG00000015701)	TTLL10 (ENSACLG00000016030)	ARHGEF19 (ENSACLG00000016084)	ENSACLG00000016105	plekhm2 (ENSACLG00000016188)	ddost (ENSACLG00000016325)	ZBTB17 (ENSACLG00000016405)	hspb7 (ENSACLG00000016685)	clcnk (ENSACLG00000016709)
P. nyererei	MODERN SPECIES	334	itchb (ENSPNYG00000015158) #7	znf341 (ENSPNYG00000015106) #8	E2F1 (ENSPNYG00000015073) #9	ENSPNYG00000015036 #10	ctnnbl1 (ENSPNYG00000014941) #11	ENSPNYG00000014928 #12	ENSPNYG00000014908 #13	szrd1 (ENSPNYG00000014902) #14	atp13a2 (ENSPNYG00000014762) #15	SDHB (ENSPNYG00000014698) #16	TMEM240 (ENSPNYG00000014674) #17	otud3 (ENSPNYG00000014657) #18	bcas2 (ENSPNYG00000014636) #19	trim33 (ENSPNYG00000014552) #20	slc66a1 (ENSPNYG00000014512) #21	nr1h5 (ENSPNYG00000014485) #22	BRPF3 (ENSPNYG00000014375) #23	MAPK13 (ENSPNYG00000014304) #24	ENSPNYG00000014286 #25	angptl7 (ENSPNYG00000014266) #26	mtor (ENSPNYG00000014120) #27	agrn (ENSPNYG00000014019) #28	ptpn11b (ENSPNYG00000013984) #29	RNF223 (ENSPNYG00000013966) #30	DENND2C (ENSPNYG00000013944) #32	ampd1 (ENSPNYG00000013894) #33	ENSPNYG00000013856 #34	csde1 (ENSPNYG00000013745) #35	SIKE1 (ENSPNYG00000013674) #36	micos10 (ENSPNYG00000013653)	HTR6 (ENSPNYG00000013635)
Burton s mouthbrooder	MODERN SPECIES	400	itchb (ENSHBUG00000012801) #7	znf341 (ENSHBUG00000012828) #8	E2F1 (ENSHBUG00000012837) #9	ENSHBUG00000012894 #10	ctnnbl1 (ENSHBUG00000012941) #11	ENSHBUG00000012948 #12	ENSHBUG00000012968 #13	szrd1 (ENSHBUG00000000375) #14	atp13a2 (ENSHBUG00000012998) #15	SDHB (ENSHBUG00000013034) #16	TMEM240 (ENSHBUG00000013053) #17	otud3 (ENSHBUG00000013064) #18	bcas2 (ENSHBUG00000013090) #19	trim33 (ENSHBUG00000013123) #20	slc66a1 (ENSHBUG00000013144) #21	nr1h5 (ENSHBUG00000013206) #22	BRPF3 (ENSHBUG00000013302) #23	MAPK13 (ENSHBUG00000013347) #24
Lyretail cichlid	MODERN SPECIES	298	itchb (ENSNBRG00000019518) #7	znf341 (ENSNBRG00000019550) #8	E2F1 (ENSNBRG00000019596) #9	ENSNBRG00000019623 #10	ctnnbl1 (ENSNBRG00000019662) #11	VSTM2L (ENSNBRG00000019710) #12	ENSNBRG00000019721 #13	szrd1 (ENSNBRG00000019730) #14	atp13a2 (ENSNBRG00000019753) #15	SDHB (ENSNBRG00000019876) #16	TMEM240 (ENSNBRG00000019901) #17	otud3 (ENSNBRG00000019916) #18	bcas2 (ENSNBRG00000019936) #19	trim33 (ENSNBRG00000019952) #20	slc66a1 (ENSNBRG00000019982) #21	nr1h5 (ENSNBRG00000020009) #22	BRPF3 (ENSNBRG00000020043) #23	ENSNBRG00000020065 #24	ENSNBRG00000020100 #25	mtor (ENSNBRG00000020145) #27	angptl7 (ENSNBRG00000020279) #26	agrn (ENSNBRG00000020301) #28	ptpn11b (ENSNBRG00000020391) #29	RNF223 (ENSNBRG00000020697) #30	ENSNBRG00000020707 #32	ampd1 (ENSNBRG00000020746) #33	ENSNBRG00000020793 #34	csde1 (ENSNBRG00000020808) #35	znhit1 (ENSNBRG00000020846)	SIKE1 (ENSNBRG00000020856) #36	ENSNBRG00000020862 #37
Midas cichlid	MODERN SPECIES	869	ARHGEF19 (ENSACIG00000014079)	TTLL10 (ENSACIG00000014117)	mib2 (ENSACIG00000014211)	ubiad1 (ENSACIG00000014354)	MMP23B (ENSACIG00000014363)	cdk11b (ENSACIG00000014379)	ENSACIG00000014412	szrd1 (ENSACIG00000014416) #14	atp13a2 (ENSACIG00000014440) #15	SDHB (ENSACIG00000014532) #16	TMEM240 (ENSACIG00000014552) #17	otud3 (ENSACIG00000014568) #18	bcas2 (ENSACIG00000014603) #19	trim33 (ENSACIG00000014617) #20	slc66a1 (ENSACIG00000014650) #21	nr1h5 (ENSACIG00000014685) #22	BRPF3 (ENSACIG00000014721) #23	MAPK13 (ENSACIG00000014771) #24	ENSACIG00000014807 #25	mtor (ENSACIG00000014848) #27	angptl7 (ENSACIG00000014964) #26	agrn (ENSACIG00000014994) #28	ptpn11b (ENSACIG00000015071) #29	RNF223 (ENSACIG00000015101) #30	ENSACIG00000015103 #32	ampd1 (ENSACIG00000015125) #33	ENSACIG00000015161 #34	csde1 (ENSACIG00000015175) #35	ENSACIG00000015225 #35	SIKE1 (ENSACIG00000015228) #36	ENSACIG00000015244 #37
Pomacentridae	ANCESTRAL SPECIES	55	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392.n #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Bicolor damselfish	MODERN SPECIES	1155	mib2 (ENSSPAG00000007619)	ubiad1 (ENSSPAG00000007697)	MMP23B (ENSSPAG00000007704)	cdk11b (ENSSPAG00000007722)	ENSSPAG00000007748	ENSSPAG00000007763	szrd1 (ENSSPAG00000007777) #14	atp13a2 (ENSSPAG00000007792) #15	SDHB (ENSSPAG00000007835) #16	ATAD3A (ENSSPAG00000007863)	TMEM240 (ENSSPAG00000007901) #17	otud3 (ENSSPAG00000007906) #18	bcas2 (ENSSPAG00000007920) #19	trim33 (ENSSPAG00000007949) #20	slc66a1 (ENSSPAG00000008036) #21	nr1h5 (ENSSPAG00000008119) #22
Pomacentridae_A	ANCESTRAL SPECIES	35	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392.n #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Amphiprion	ANCESTRAL SPECIES	46	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392.n #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Orange clownfish	MODERN SPECIES	22	TTLL10 (ENSAPEG00000009671)	mib2 (ENSAPEG00000009595)	ubiad1 (ENSAPEG00000009575)	MMP23B (ENSAPEG00000009563)	cdk11b (ENSAPEG00000009495)	ENSAPEG00000009459	szrd1 (ENSAPEG00000009438) #14	atp13a2 (ENSAPEG00000009148) #15	SDHB (ENSAPEG00000009114) #16	ATAD3A (ENSAPEG00000009044)	TMEM240 (ENSAPEG00000009028) #17	otud3 (ENSAPEG00000009014) #18	bcas2 (ENSAPEG00000008983) #19	trim33 (ENSAPEG00000008852) #20	slc66a1 (ENSAPEG00000008790) #21	nr1h5 (ENSAPEG00000008738) #22	BRPF3 (ENSAPEG00000008654) #23	MAPK13 (ENSAPEG00000008580) #24	ENSAPEG00000008559 #25	ENSAPEG00000008535	angptl7 (ENSAPEG00000008509) #26	mtor (ENSAPEG00000008291) #27	agrn (ENSAPEG00000007762) #28	ptpn11b (ENSAPEG00000007668) #29	ENSAPEG00000007645	ptpn11b (ENSAPEG00000007583) #29	DENND2C (ENSAPEG00000007457) #32	ampd1 (ENSAPEG00000007395) #33	ENSAPEG00000007373 #34	csde1 (ENSAPEG00000007194) #35	SIKE1 (ENSAPEG00000007134) #36
Clown anemonefish	MODERN SPECIES	1317														klf7b (ENSAOCG00000020629)	slc66a1 (ENSAOCG00000020604) #21	nr1h5 (ENSAOCG00000020595) #22	BRPF3 (ENSAOCG00000020547) #23	MAPK13 (ENSAOCG00000020474) #24
Spiny chromis	MODERN SPECIES	1039																nr1h5 (ENSAPOG00000013235) #22	BRPF3 (ENSAPOG00000000800) #23	MAPK13 (ENSAPOG00000013097) #24	znf703 (ENSAPOG00000013004)	ERLIN2 (ENSAPOG00000012944)	ENSAPOG00000012895	bmp10 (ENSAPOG00000012857)	arhgap25 (ENSAPOG00000012847)	cds2 (ENSAPOG00000012823)
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Oryzias	ANCESTRAL SPECIES	4	ENSGT00390000015175	ENSGT00940000164482	ENSGT01030000234571.b.b.b.a.b	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037.g #27	ENSGT00940000157064.a.a #26	ENSGT00930000151037.h #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b.d #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345.d #37
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00390000015175	ENSGT00940000164482	ENSGT01030000234571.b.b.b.a.b	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037.g #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b.d #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345.d #37	ENSGT00940000164988
Indian medaka	MODERN SPECIES	23	uqcrc1 (ENSOMEG00000017343)	ENSOMEG00000017300	hmces (ENSOMEG00000017291)	rab7a (ENSOMEG00000017263)	phtf1 (ENSOMEG00000017232)	ENSOMEG00000017197	ENSOMEG00000017154	ENSOMEG00000016957	dffb (ENSOMEG00000016939)	ENSOMEG00000016913	b3gnt7l (ENSOMEG00000016906)	otud3 (ENSOMEG00000016883) #18	bcas2 (ENSOMEG00000016837) #19	trim33 (ENSOMEG00000016791) #20	slc66a1 (ENSOMEG00000016676) #21	nr1h5 (ENSOMEG00000016653) #22	BRPF3 (ENSOMEG00000016628) #23	MAPK13 (ENSOMEG00000016551) #24	ENSOMEG00000016521 #25	ENSOMEG00000016502 #27	angptl7 (ENSOMEG00000016482) #26	mtor (ENSOMEG00000016453) #27	agrn (ENSOMEG00000016348) #28	ENSOMEG00000015993	ptpn11b (ENSOMEG00000015961) #29	ENSOMEG00000015880 #30	ENSOMEG00000015863 #32	ampd1 (ENSOMEG00000015807) #33	ENSOMEG00000015735	ENSOMEG00000015717	ENSOMEG00000000993 #34
Oryzias_a	ANCESTRAL SPECIES		ENSGT00390000015175	ENSGT00940000164482	ENSGT01030000234571.b.b.b.a.b	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT00940000159714 #15	ENSGT00390000005532.l #14	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037.g #27	ENSGT00940000157064.a.a #26	ENSGT00930000151037.h #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b.d #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345.d #37
Chinese medaka	MODERN SPECIES	1259																ENSOSIG00000018671 #22
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000025990	ENSORLG00000029162	mib2 (ENSORLG00000000153)	ubiad1 (ENSORLG00000000160)	MMP23B (ENSORLG00000000164)	cdk11b (ENSORLG00000000181)	atp13a2 (ENSORLG00000000244) #15	szrd1 (ENSORLG00000000208) #14	ENSORLG00000000267 #16	ENSORLG00000027590	TMEM240 (ENSORLG00000025885) #17	otud3 (ENSORLG00000000274) #18	bcas2 (ENSORLG00000000287) #19	trim33 (ENSORLG00000000325) #20	slc66a1 (ENSORLG00000000341) #21	ENSORLG00000030631 #22	ENSORLG00000000358 #23	ENSORLG00000000393 #24	ENSORLG00000000403 #25	mtor (ENSORLG00000026268) #27	angptl7 (ENSORLG00000000502) #26	mtor (ENSORLG00000000484) #27	agrn (ENSORLG00000000529) #28	ptpn11b (ENSORLG00000000613) #29	ENSORLG00000023532 #30	DENND2C (ENSORLG00000000628) #32	ENSORLG00000022588	ampd1 (ENSORLG00000000655) #33	ENSORLG00000027709 #34	csde1 (ENSORLG00000000707) #35	SIKE1 (ENSORLG00000000742) #36
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT00390000003618	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Turquoise killifish	MODERN SPECIES	1624	trim33 (ENSNFUG00015019481) #20	bcas2 (ENSNFUG00015019425) #19	OTUD3 (ENSNFUG00015019423) #18	TMEM240 (ENSNFUG00015019420) #17	SDHB (ENSNFUG00015019414) #16	ATP13A2 (ENSNFUG00015019337) #15	KDM5B (ENSNFUG00015016049)	ENSNFUG00015015829	KLHL12 (ENSNFUG00015015811)	ptpn1 (ENSNFUG00015015787)	CEBPB (ENSNFUG00015015773)	TMEM189 (ENSNFUG00015015737)	SCRT2 (ENSNFUG00015015725)	ythdf1 (ENSNFUG00015015704)	PQLC2 (ENSNFUG00015015687) #21	NR1H5 (ENSNFUG00015015639) #22	BRPF3 (ENSNFUG00015015625) #23	MAPK13 (ENSNFUG00015015554) #24	ENSNFUG00015015519 #25	ANGPTL7 (ENSNFUG00015015497) #26	mtor (ENSNFUG00015015285) #27	ENSNFUG00015015207	agrn (ENSNFUG00015008539) #28	csde1 (ENSNFUG00015007295) #35	SIKE1 (ENSNFUG00015007150) #36	ENSNFUG00015007145 #37	HTR6 (ENSNFUG00015007141)	TMCO4 (ENSNFUG00015007135)	VWA1 (ENSNFUG00015007123)	RALGAPB (ENSNFUG00015007064)	PREX1 (ENSNFUG00015005878)
Mangrove rivulus	MODERN SPECIES	18	ENSKMAG00000004356	mib2 (ENSKMAG00000004471)	ubiad1 (ENSKMAG00000004601)	MMP23B (ENSKMAG00000004610)	cdk11b (ENSKMAG00000004628)	ENSKMAG00000004650	szrd1 (ENSKMAG00000004662) #14	atp13a2 (ENSKMAG00000004694) #15	atp13a2 (ENSKMAG00000004772) #15	SDHB (ENSKMAG00000004844) #16	TMEM240 (ENSKMAG00000004878) #17	otud3 (ENSKMAG00000004897) #18	bcas2 (ENSKMAG00000004912) #19	trim33 (ENSKMAG00000004948) #20	slc66a1 (ENSKMAG00000005001) #21	nr1h5 (ENSKMAG00000005012) #22	BRPF3 (ENSKMAG00000005040) #23	ENSKMAG00000005118 #24	ENSKMAG00000005166 #25	mtor (ENSKMAG00000005214) #27	angptl7 (ENSKMAG00000005393) #26	agrn (ENSKMAG00000005430) #28	ptpn11b (ENSKMAG00000005510) #29	RNF223 (ENSKMAG00000005538) #30	DENND2C (ENSKMAG00000005555) #32	ampd1 (ENSKMAG00000005597) #33	ENSKMAG00000005635 #34	csde1 (ENSKMAG00000005685) #35	SIKE1 (ENSKMAG00000005832) #36	ENSKMAG00000005847 #37	HTR6 (ENSKMAG00000005867)
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097.g	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000157867.a.b	ENSGT00940000164599.j.a.a.a	ENSGT00390000012490	ENSGT00940000156792.g.b	ENSGT00940000166636	ENSGT00390000003809	ENSGT00940000159173	ENSGT00390000003022	ENSGT00390000000020.a	ENSGT00940000158197.d.d	ENSGT00950000183149.B	ENSGT00410000025596.a.a	ENSGT00390000016016.B
Poecilia	ANCESTRAL SPECIES	26	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097.g	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000157867.a.b	ENSGT00940000164599.j.a.a.a	ENSGT00390000012490	ENSGT00940000156792.g.b	ENSGT00940000166636	ENSGT00390000003809	ENSGT00940000159173	ENSGT00390000003022	ENSGT00390000000020.a	ENSGT00940000158197.d.d	ENSGT00950000183149.B	ENSGT00410000025596.a.a	ENSGT00390000016016.B
NAME_6	ANCESTRAL SPECIES	91	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097.g	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000157867.a.b	ENSGT00940000164599.j.a.a.a	ENSGT00390000012490	ENSGT00940000156792.g.b	ENSGT00940000166636	ENSGT00390000003809	ENSGT00940000159173	ENSGT00390000003022	ENSGT00390000000020.a	ENSGT00940000158197.d.d	ENSGT00950000183149.B	ENSGT00410000025596.a.a	ENSGT00390000016016.B
Amazon molly	MODERN SPECIES	505	ENSPFOG00000015629	ENSPFOG00000023253	mib2 (ENSPFOG00000015645)	ubiad1 (ENSPFOG00000015719)	MMP23B (ENSPFOG00000015725)	cdk11b (ENSPFOG00000015789)	ENSPFOG00000022072	szrd1 (ENSPFOG00000015823) #14	atp13a2 (ENSPFOG00000015841) #15	SDHB (ENSPFOG00000015918) #16	TMEM240 (ENSPFOG00000015961) #17	otud3 (ENSPFOG00000015964) #18	bcas2 (ENSPFOG00000015978) #19	trim33 (ENSPFOG00000016002) #20	slc66a1 (ENSPFOG00000016097) #21	nr1h5 (ENSPFOG00000016102) #22	BRPF3 (ENSPFOG00000016155) #23	ENSPFOG00000016209 #24	ENSPFOG00000016275
Sailfin molly	MODERN SPECIES	256			mib2 (ENSPLAG00000007112)	ubiad1 (ENSPLAG00000007090)	MMP23B (ENSPLAG00000007082)	cdk11b (ENSPLAG00000007045)	ENSPLAG00000000145	szrd1 (ENSPLAG00000006954) #14	atp13a2 (ENSPLAG00000006926) #15	SDHB (ENSPLAG00000006895) #16	TMEM240 (ENSPLAG00000006869) #17	otud3 (ENSPLAG00000006852) #18	bcas2 (ENSPLAG00000006822) #19	trim33 (ENSPLAG00000006769) #20	slc66a1 (ENSPLAG00000006713) #21	nr1h5 (ENSPLAG00000006695) #22	BRPF3 (ENSPLAG00000006665) #23	ENSPLAG00000006596 #24	KCNAB2 (ENSPLAG00000006544)	mthfr (ENSPLAG00000006483)	slc2a1a (ENSPLAG00000006430)	slc38a5b (ENSPLAG00000006398)	ccdc22 (ENSPLAG00000006333)	tbc1d25 (ENSPLAG00000006294)	ndufb11 (ENSPLAG00000006268)	ENSPLAG00000006251	STK35 (ENSPLAG00000006207)
Guppy	MODERN SPECIES	459	ARHGEF19 (ENSPREG00000010151)	ENSPREG00000010137	mib2 (ENSPREG00000010109)	ubiad1 (ENSPREG00000010088)	ENSPREG00000010081	MMP23B (ENSPREG00000010063)	cdk11b (ENSPREG00000010006)	ENSPREG00000009993	atp13a2 (ENSPREG00000009777) #15	SDHB (ENSPREG00000009741) #16	TMEM240 (ENSPREG00000009733) #17	otud3 (ENSPREG00000009726) #18	bcas2 (ENSPREG00000009694) #19	trim33 (ENSPREG00000009576) #20	slc66a1 (ENSPREG00000009542) #21	nr1h5 (ENSPREG00000009504) #22	BRPF3 (ENSPREG00000009431) #23	ENSPREG00000009397 #24	kcnab2b (ENSPREG00000009258)	ENSPREG00000009224	mthfr (ENSPREG00000009194)	slc2a1a (ENSPREG00000009148)	slc38a5b (ENSPREG00000009129)	ccdc22 (ENSPREG00000009104)	tbc1d25 (ENSPREG00000009072)	ndufb11 (ENSPREG00000009033)	MTCH1 (ENSPREG00000008998)	stk35 (ENSPREG00000008977)	pdyn (ENSPREG00000008965)	GMEB2 (ENSPREG00000008940)	tpk2 (ENSPREG00000008930)
Platyfish	MODERN SPECIES		ENSXMAG00000001753	ENSXMAG00000012468	mib2 (ENSXMAG00000012469)	ubiad1 (ENSXMAG00000012507)	MMP23B (ENSXMAG00000012509)	cdk11b (ENSXMAG00000012515)	ENSXMAG00000029348	szrd1 (ENSXMAG00000025502) #14	atp13a2 (ENSXMAG00000012558) #15	SDHB (ENSXMAG00000012600) #16	TMEM240 (ENSXMAG00000012610) #17	otud3 (ENSXMAG00000012612) #18	bcas2 (ENSXMAG00000012622) #19	trim33 (ENSXMAG00000012634) #20	slc66a1 (ENSXMAG00000012669) #21	nr1h5 (ENSXMAG00000012678) #22	BRPF3 (ENSXMAG00000012687) #23	MAPK13 (ENSXMAG00000012699) #24	ENSXMAG00000024569	ENSXMAG00000025184	kcnab2b (ENSXMAG00000007677)	ENSXMAG00000023670	mthfr (ENSXMAG00000012737)	slc2a1a (ENSXMAG00000012748)	slc38a5b (ENSXMAG00000012770)	ccdc22 (ENSXMAG00000012774)	tbc1d25 (ENSXMAG00000027860)	ndufb11 (ENSXMAG00000012836)	MTCH1 (ENSXMAG00000012838)	stk35 (ENSXMAG00000012847)	pdyn (ENSXMAG00000026772)
NAME_4	ANCESTRAL SPECIES	41	ENSGT01030000234571.b.b.b.a.b	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714.e #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Sheepshead minnow	MODERN SPECIES	510	zgc:113176 (ENSCVAG00000001858)	ubiad1 (ENSCVAG00000001861)	MMP23B (ENSCVAG00000001867)	cdk11b (ENSCVAG00000001896)	ENSCVAG00000001901	szrd1 (ENSCVAG00000001904) #14	atp13a2 (ENSCVAG00000001934) #15	atp13a2 (ENSCVAG00000001954) #15	SDHB (ENSCVAG00000001962) #16	TMEM240 (ENSCVAG00000001965) #17	otud3 (ENSCVAG00000001969) #18	bcas2 (ENSCVAG00000001974) #19	trim33 (ENSCVAG00000001996) #20	slc66a1 (ENSCVAG00000002005) #21	ENSCVAG00000002006	ENSCVAG00000002008 #22	ENSCVAG00000002012	ABCB6 (ENSCVAG00000002052)	ENSCVAG00000002060	ENSCVAG00000002065
Mummichog	MODERN SPECIES	2191	ARHGEF19 (ENSFHEG00000000861)	TTLL10 (ENSFHEG00000012746)	mib2 (ENSFHEG00000012729)	ubiad1 (ENSFHEG00000012640)	MMP23B (ENSFHEG00000012628)	cdk11b (ENSFHEG00000012616)	ENSFHEG00000012499	szrd1 (ENSFHEG00000012478) #14	atp13a2 (ENSFHEG00000012465) #15	SDHB (ENSFHEG00000012444) #16	TMEM240 (ENSFHEG00000012433) #17	otud3 (ENSFHEG00000012416) #18	bcas2 (ENSFHEG00000012410) #19	trim33 (ENSFHEG00000012379) #20	slc66a1 (ENSFHEG00000012317) #21	nr1h5 (ENSFHEG00000012303) #22	BRPF3 (ENSFHEG00000012223) #23	ENSFHEG00000012127 #24	ENSFHEG00000012079 #25	mtor (ENSFHEG00000012058) #27	angptl7 (ENSFHEG00000011903) #26	agrn (ENSFHEG00000011868) #28	ptpn11b (ENSFHEG00000011141) #29	ENSFHEG00000011052	RNF223 (ENSFHEG00000011048) #30	ENSFHEG00000000734 #32	DENND2C (ENSFHEG00000011013) #32	ampd1 (ENSFHEG00000010948) #33	ENSFHEG00000010839 #34	csde1 (ENSFHEG00000010799) #35	SIKE1 (ENSFHEG00000010567) #36
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT00940000164988
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT00940000154484.A
Climbing perch	MODERN SPECIES	20	ENSATEG00000005169	ENSATEG00000005159	mib2 (ENSATEG00000005118)	ubiad1 (ENSATEG00000026486)	ENSATEG00000005073	cdk11b (ENSATEG00000005002)	ENSATEG00000004960	szrd1 (ENSATEG00000027903) #14	atp13a2 (ENSATEG00000004898) #15	ENSATEG00000004854 #16	ENSATEG00000029392 #17	ENSATEG00000004825 #18	ENSATEG00000026999 #19	trim33 (ENSATEG00000004717) #20	slc66a1 (ENSATEG00000004697) #21	nr1h5 (ENSATEG00000004649) #22	ENSATEG00000004586 #23	ENSATEG00000004520 #24	ENSATEG00000004494 #25	ENSATEG00000004456 #26	ENSATEG00000004175 #27	ENSATEG00000004139 #28	ENSATEG00000004060 #29	ENSATEG00000004040 #30	DENND2C (ENSATEG00000004030) #32	ENSATEG00000003961 #33	ENSATEG00000029204 #34	CSDE1 (ENSATEG00000003864) #35	ENSATEG00000003841 #36	ENSATEG00000003796 #37	ENSATEG00000026807
Siamese fighting fish	MODERN SPECIES	18	ARHGEF19 (ENSBSLG00000003099)	ENSBSLG00000003585	TTLL10 (ENSBSLG00000003608)	mib2 (ENSBSLG00000004064)	ubiad1 (ENSBSLG00000004732)	MMP23B (ENSBSLG00000004757)	cdk11b (ENSBSLG00000005431)	ENSBSLG00000006563	szrd1 (ENSBSLG00000006588) #14	atp13a2 (ENSBSLG00000006876) #15	TMEM240 (ENSBSLG00000007724) #17	otud3 (ENSBSLG00000007756) #18	bcas2 (ENSBSLG00000007797) #19	trim33 (ENSBSLG00000007990) #20	slc66a1 (ENSBSLG00000009440) #21	nr1h5 (ENSBSLG00000009457) #22	BRPF3 (ENSBSLG00000009470) #23	MAPK13 (ENSBSLG00000009510) #24	ENSBSLG00000010242 #25	mtor (ENSBSLG00000010259) #27	angptl7 (ENSBSLG00000010382) #26	agrn (ENSBSLG00000010997) #28	ENSBSLG00000013935	ptpn11b (ENSBSLG00000014153) #29	RNF223 (ENSBSLG00000014746) #30	DENND2C (ENSBSLG00000014757) #32	ampd1 (ENSBSLG00000014875) #33	ENSBSLG00000016455 #34	csde1 (ENSBSLG00000016489) #35	SIKE1 (ENSBSLG00000019070) #36	ENSBSLG00000019084 #37
Zig-zag eel	MODERN SPECIES	21	ENSMAMG00000014220	ENSMAMG00000014186	ENSMAMG00000014134	mib2 (ENSMAMG00000014100)	ubiad1 (ENSMAMG00000014083)	ENSMAMG00000014069	cdk11b (ENSMAMG00000013969)	ENSMAMG00000013947	szrd1 (ENSMAMG00000013944) #14	ENSMAMG00000013910 #15	ENSMAMG00000013884 #17	ENSMAMG00000013878 #18	ENSMAMG00000025896 #19	trim33 (ENSMAMG00000013717) #20	slc66a1 (ENSMAMG00000013644) #21	nr1h5 (ENSMAMG00000013617) #22	ENSMAMG00000013600 #23	ENSMAMG00000013549 #24	ENSMAMG00000026120 #25	ENSMAMG00000013521 #26	ENSMAMG00000013377 #27	ENSMAMG00000013283 #28	ENSMAMG00000013236 #29	ENSMAMG00000013221 #30	DENND2C (ENSMAMG00000013134) #32	ENSMAMG00000008994 #33	ENSMAMG00000028707 #34	CSDE1 (ENSMAMG00000008821) #35	ENSMAMG00000008805 #36	ENSMAMG00000026350 #37	ENSMAMG00000008762
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Pleuronectoidei	ANCESTRAL SPECIES	14	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Turbot	MODERN SPECIES	2	ENSSMAG00000006970	vwa1 (ENSSMAG00000007138)	ENSSMAG00000007146	ENSSMAG00000007162	ENSSMAG00000033188 #37	ENSSMAG00000007182 #36	ENSSMAG00000007203 #35	szrd1 (ENSSMAG00000007430) #14	atp13a2 (ENSSMAG00000007454) #15	ENSSMAG00000007477 #16	ENSSMAG00000007493 #17	ENSSMAG00000007504 #18	ENSSMAG00000036720 #19	trim33 (ENSSMAG00000007543) #20	slc66a1 (ENSSMAG00000007573) #21	nr1h5 (ENSSMAG00000007598) #22	ENSSMAG00000007646 #23	ENSSMAG00000007696 #24	ENSSMAG00000037374 #25	ENSSMAG00000007774 #27	ENSSMAG00000007890 #26	ENSSMAG00000007923 #28	ENSSMAG00000008107 #29	ENSSMAG00000008165 #30	ENSSMAG00000008172 #32	ENSSMAG00000008196 #33	ENSSMAG00000036974 #34	ENSSMAG00000025199	cdk11b (ENSSMAG00000008291)	ENSSMAG00000008352	ubiad1 (ENSSMAG00000008362)
Tongue sole	MODERN SPECIES	1	ENSCSEG00000005104	SLC7A5 (ENSCSEG00000005095)	RNF223 (ENSCSEG00000005091) #30	ptpn11b (ENSCSEG00000005082) #29	agrn (ENSCSEG00000005060) #28	angptl7 (ENSCSEG00000005058) #26	mtor (ENSCSEG00000005040) #27	ENSCSEG00000005036 #25	ENSCSEG00000005028 #24	BRPF3 (ENSCSEG00000005002) #23	TMEM240 (ENSCSEG00000004992) #17	otud3 (ENSCSEG00000004985) #18	bcas2 (ENSCSEG00000004980) #19	trim33 (ENSCSEG00000004968) #20	slc66a1 (ENSCSEG00000004961) #21	nr1h5 (ENSCSEG00000004953) #22	atp13a2 (ENSCSEG00000004931) #15	szrd1 (ENSCSEG00000004927) #14	ENSCSEG00000004922	cdk11b (ENSCSEG00000004901)	MMP23B (ENSCSEG00000004897)	ubiad1 (ENSCSEG00000004896)	mib2 (ENSCSEG00000004890)	ENSCSEG00000004879	ENSCSEG00000004878	ENSCSEG00000004866	klf15 (ENSCSEG00000004864)	CPNE9 (ENSCSEG00000004858)	slc2a1a (ENSCSEG00000004852)	slc38a5b (ENSCSEG00000004849)	ccdc22 (ENSCSEG00000004843)
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037 #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Barramundi perch	MODERN SPECIES	62	TTLL10 (ENSLCAG00010001296)	mib2 (ENSLCAG00010001310)	ubiad1 (ENSLCAG00010001331)	MMP23B (ENSLCAG00010001335)	cdk11b (ENSLCAG00010001351)	ENSLCAG00010001412	szrd1 (ENSLCAG00010001418) #14	atp13a2 (ENSLCAG00010001462) #15	SDHB (ENSLCAG00010001559) #16	ATAD3A (ENSLCAG00010001605)	TMEM240 (ENSLCAG00010001614) #17	otud3 (ENSLCAG00010001619) #18	bcas2 (ENSLCAG00010001629) #19	trim33 (ENSLCAG00010001694) #20	slc66a1 (ENSLCAG00010002014) #21	nr1h5 (ENSLCAG00010002039) #22	BRPF3 (ENSLCAG00010002050) #23	MAPK13 (ENSLCAG00010002062) #24	ENSLCAG00010002068 #25	mtor (ENSLCAG00010002119) #27	angptl7 (ENSLCAG00010002213) #26	agrn (ENSLCAG00010002519) #28	ENSLCAG00010003921 #29	RNF223 (ENSLCAG00010004007) #30	ENSLCAG00010004010 #32	ENSLCAG00010004013 #32	ampd1 (ENSLCAG00010004138) #33	ENSLCAG00010004648 #34	csde1 (ENSLCAG00010004839) #35	SIKE1 (ENSLCAG00010005854) #36	ENSLCAG00010005858 #37
Seriola	ANCESTRAL SPECIES	103	ENSGT01030000234571.b.b.b.a.b	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841.c	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30
Greater amberjack	MODERN SPECIES	74	ARHGEF19 (ENSSDUG00000003111)	TTLL10 (ENSSDUG00000003074)	mib2 (ENSSDUG00000003005)	ubiad1 (ENSSDUG00000002981)	MMP23B (ENSSDUG00000002961)	cdk11b (ENSSDUG00000002908)	ENSSDUG00000002895	szrd1 (ENSSDUG00000002888) #14	atp13a2 (ENSSDUG00000002851) #15	SDHB (ENSSDUG00000002824) #16	TMEM240 (ENSSDUG00000002804) #17	otud3 (ENSSDUG00000002795) #18	bcas2 (ENSSDUG00000002743) #19	trim33 (ENSSDUG00000002633) #20	slc66a1 (ENSSDUG00000002582) #21	nr1h5 (ENSSDUG00000002490) #22	BRPF3 (ENSSDUG00000002454) #23	MAPK13 (ENSSDUG00000002391) #24	ENSSDUG00000002373 #25	angptl7 (ENSSDUG00000002355) #26	mtor (ENSSDUG00000002035) #27	ENSSDUG00000001964	ENSSDUG00000001946	ENSSDUG00000001928	agrn (ENSSDUG00000001803) #28	ptpn11b (ENSSDUG00000001746) #29	RNF223 (ENSSDUG00000001721) #30
Yellowtail amberjack	MODERN SPECIES	2238		TTLL10 (ENSSLDG00000011010)	mib2 (ENSSLDG00000010879)	ubiad1 (ENSSLDG00000010827)	MMP23B (ENSSLDG00000010797)	cdk11b (ENSSLDG00000010713)	ENSSLDG00000010663	szrd1 (ENSSLDG00000010648) #14	atp13a2 (ENSSLDG00000010408) #15	SDHB (ENSSLDG00000010313) #16	TMEM240 (ENSSLDG00000010282) #17	otud3 (ENSSLDG00000010258) #18	bcas2 (ENSSLDG00000010229) #19	trim33 (ENSSLDG00000010180) #20	slc66a1 (ENSSLDG00000010140) #21	nr1h5 (ENSSLDG00000010118) #22	BRPF3 (ENSSLDG00000010069) #23	MAPK13 (ENSSLDG00000010007) #24
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Tetraodontidae	ANCESTRAL SPECIES	38	ENSGT00940000169158	ENSGT00940000160919	ENSGT00940000158097.d	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00930000151037.j.b #27	ENSGT00940000157064.a.a #26	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003471	rab2a (ENSTNIG00000003472)	ppp2r1bb (ENSTNIG00000003473)	med29 (ENSTNIG00000003474)	mlf1 (ENSTNIG00000003475)	pex10 (ENSTNIG00000003476)	plch2a (ENSTNIG00000003477)	tpi1b (ENSTNIG00000003478)	ENSTNIG00000003479	ENSTNIG00000003480	RAB26 (ENSTNIG00000003481)	laptm4b (ENSTNIG00000003482)	rpl30 (ENSTNIG00000000674)	ENSTNIG00000003483	ENSTNIG00000005199	nr1h5 (ENSTNIG00000003487) #22	ENSTNIG00000003488 #23	gdap1 (ENSTNIG00000003490)	ENSTNIG00000004489	ARHGEF37 (ENSTNIG00000000375)	ENSTNIG00000003493	ENSTNIG00000003494	RIMBP2 (ENSTNIG00000003495)	ENSTNIG00000003496	ENSTNIG00000003497	ube2g1b (ENSTNIG00000003498)	arpc3 (ENSTNIG00000003499)	gpn3 (ENSTNIG00000003500)	rnf170 (ENSTNIG00000003501)	HOOK3 (ENSTNIG00000003502)	tmed4 (ENSTNIG00000003504)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004229	slc4a1a (ENSTNIG00000004273)	MIEN1 (ENSTNIG00000004221)	ENSTNIG00000004220	nhp2 (ENSTNIG00000004219)	ENSTNIG00000000669	ENSTNIG00000001509	ttl (ENSTNIG00000004207)	ezh2 (ENSTNIG00000002191)	ssr1 (ENSTNIG00000003328)	ENSTNIG00000000820	ENSTNIG00000004199	ENSTNIG00000004198	trim33 (ENSTNIG00000004197) #20	slc66a1 (ENSTNIG00000004196) #21	nr1h5 (ENSTNIG00000004195) #22	ENSTNIG00000004194 #23	TAAR1 (ENSTNIG00000000404)	stard10 (ENSTNIG00000004193)	ENSTNIG00000002324	LONRF1 (ENSTNIG00000004186)	hdlbpa (ENSTNIG00000004185)	ccm2 (ENSTNIG00000004176)	fam167ab (ENSTNIG00000000402)	sh3bgrl2 (ENSTNIG00000001189)	ENSTNIG00000004175	setd7 (ENSTNIG00000004161)	fignl1 (ENSTNIG00000004160)	ikzf1 (ENSTNIG00000004159)	nr2f1a (ENSTNIG00000004157)	loxl5b (ENSTNIG00000000510)
Fugu	MODERN SPECIES	15	ENSTRUG00000030658	TTLL10 (ENSTRUG00000019857)	mib2 (ENSTRUG00000005595)	ubiad1 (ENSTRUG00000021990)	MMP23B (ENSTRUG00000005977)	cdk11b (ENSTRUG00000006073)	ENSTRUG00000019835	szrd1 (ENSTRUG00000006423) #14	atp13a2 (ENSTRUG00000006519) #15	SDHB (ENSTRUG00000007176) #16	TMEM240 (ENSTRUG00000025742) #17	otud3 (ENSTRUG00000007307) #18	bcas2 (ENSTRUG00000024633) #19	trim33 (ENSTRUG00000007557) #20	slc66a1 (ENSTRUG00000008043) #21	nr1h5 (ENSTRUG00000008191) #22	BRPF3 (ENSTRUG00000008374) #23	MAPK13 (ENSTRUG00000008627) #24	ENSTRUG00000026485	ENSTRUG00000023464 #25	mtor (ENSTRUG00000009031) #27	angptl7 (ENSTRUG00000009793) #26	agrn (ENSTRUG00000006249) #28	ptpn11b (ENSTRUG00000006764) #29	RNF223 (ENSTRUG00000020331) #30	DENND2C (ENSTRUG00000007448) #32	ampd1 (ENSTRUG00000007552) #33	ENSTRUG00000031631 #34	csde1 (ENSTRUG00000007996) #35	sike1 (ENSTRUG00000030693) #36	ENSTRUG00000008412 #37
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Ballan wrasse	MODERN SPECIES	83														trim33 (ENSLBEG00000013662) #20	slc66a1 (ENSLBEG00000013762) #21	nr1h5 (ENSLBEG00000013800) #22	BRPF3 (ENSLBEG00000013860) #23	ENSLBEG00000013938 #24	ENSLBEG00000014017 #25	mtor (ENSLBEG00000014115) #27	angptl7 (ENSLBEG00000014222) #26	agrn (ENSLBEG00000014305) #28	ptpn11b (ENSLBEG00000014479) #29	RNF223 (ENSLBEG00000014526) #30	DENND2C (ENSLBEG00000014549) #32	ampd1 (ENSLBEG00000014590) #33	ENSLBEG00000014652 #34	csde1 (ENSLBEG00000014770) #35	SIKE1 (ENSLBEG00000014938) #36	ENSLBEG00000014975 #37	HTR6 (ENSLBEG00000015013)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	20	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
European seabass	MODERN SPECIES	14	ENSDLAG00005010663	mib2 (ENSDLAG00005010729)	ubiad1 (ENSDLAG00005029746)	ENSDLAG00005012175	cdk11b (ENSDLAG00005012222)	ENSDLAG00005033030	szrd1 (ENSDLAG00005030755) #14	atp13a2 (ENSDLAG00005014127) #15	ENSDLAG00005016007 #16	ENSDLAG00005016300	ENSDLAG00005026527 #17	ENSDLAG00005016579 #18	ENSDLAG00005030653 #19	trim33 (ENSDLAG00005016596) #20	slc66a1 (ENSDLAG00005016846) #21	nr1h5 (ENSDLAG00005016862) #22	ENSDLAG00005016886 #23	ENSDLAG00005016904 #24	ENSDLAG00005017053 #25	ENSDLAG00005034287 #27	ENSDLAG00005019287 #26	ENSDLAG00005019363 #28	ENSDLAG00005022089 #29	ENSDLAG00005034563 #30	DENND2C (ENSDLAG00005032504) #32	ENSDLAG00005022825 #33	ENSDLAG00005023188 #34	CSDE1 (ENSDLAG00005023227) #35	ENSDLAG00005031029 #36	ENSDLAG00005023929 #37	ENSDLAG00005033304
Large yellow croaker	MODERN SPECIES	487	TTLL10 (ENSLCRG00005022029)	mib2 (ENSLCRG00005000895)	ubiad1 (ENSLCRG00005004012)	MMP23B (ENSLCRG00005004013)	cdk11b (ENSLCRG00005004029)	ENSLCRG00005006490	szrd1 (ENSLCRG00005006491) #14	atp13a2 (ENSLCRG00005006502) #15	SDHB (ENSLCRG00005006667) #16	ATAD3A (ENSLCRG00005006903)	TMEM240 (ENSLCRG00005006946) #17	otud3 (ENSLCRG00005006947) #18	bcas2 (ENSLCRG00005006950) #19	trim33 (ENSLCRG00005006953) #20	slc66a1 (ENSLCRG00005006958) #21	nr1h5 (ENSLCRG00005006959) #22	BRPF3 (ENSLCRG00005006963) #23	MAPK13 (ENSLCRG00005006968) #24	ENSLCRG00005006978 #25	mtor (ENSLCRG00005006997) #27	angptl7 (ENSLCRG00005007070) #26	agrn (ENSLCRG00005007112) #28	ENSLCRG00005010078 #29	RNF223 (ENSLCRG00005011444) #30	DENND2C (ENSLCRG00005011454) #32	ampd1 (ENSLCRG00005011483) #33	ENSLCRG00005012205 #34	csde1 (ENSLCRG00005012246) #35	SIKE1 (ENSLCRG00005014547) #36	ENSLCRG00005014549 #37	HTR6 (ENSLCRG00005014550)
Gilthead seabream	MODERN SPECIES	21	TTLL10 (ENSSAUG00010007248)	mib2 (ENSSAUG00010007270)	ubiad1 (ENSSAUG00010008360)	MMP23B (ENSSAUG00010008361)	cdk11b (ENSSAUG00010008413)	ENSSAUG00010011667	szrd1 (ENSSAUG00010011668) #14	atp13a2 (ENSSAUG00010011672) #15	SDHB (ENSSAUG00010011676) #16	ATAD3A (ENSSAUG00010011858)	TMEM240 (ENSSAUG00010012333) #17	otud3 (ENSSAUG00010012334) #18	bcas2 (ENSSAUG00010012335) #19	trim33 (ENSSAUG00010012391) #20	slc66a1 (ENSSAUG00010014109) #21	nr1h5 (ENSSAUG00010014116) #22	BRPF3 (ENSSAUG00010014119) #23	ENSSAUG00010014128 #24	ENSSAUG00010014134	ENSSAUG00010014137 #25	mtor (ENSSAUG00010014229) #27	angptl7 (ENSSAUG00010017945) #26	agrn (ENSSAUG00010018051) #28	ptpn11b (ENSSAUG00010021325) #29	RNF223 (ENSSAUG00010022415) #30	DENND2C (ENSSAUG00010022420) #32	ampd1 (ENSSAUG00010022440) #33	ENSSAUG00010023348 #34	csde1 (ENSSAUG00010023384) #35	SIKE1 (ENSSAUG00010023472) #36	ENSSAUG00010023475 #37
Perciformes	ANCESTRAL SPECIES	4	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00940000161154.b	ENSGT01050000244850.A.b.a.b	ENSGT00390000000903.b.b	ENSGT00940000167073	ENSGT00940000163428.a.a.b	ENSGT00940000159065.a	ENSGT00940000155473.c.a
Stickleback	MODERN SPECIES	11	ENSGACG00000005216	mib2 (ENSGACG00000005209)	ubiad1 (ENSGACG00000005205)	MMP23B (ENSGACG00000005198)	cdk11b (ENSGACG00000005177)	szrd1 (ENSGACG00000005166) #14	atp13a2 (ENSGACG00000005124) #15	SDHB (ENSGACG00000005072) #16	ATAD3A (ENSGACG00000005036)	ENSGACG00000005033	TMEM240 (ENSGACG00000005027) #17	otud3 (ENSGACG00000005021) #18	bcas2 (ENSGACG00000004981) #19	trim33 (ENSGACG00000004973) #20	slc66a1 (ENSGACG00000004944) #21	nr1h5 (ENSGACG00000004938) #22	BRPF3 (ENSGACG00000004924) #23	MAPK13 (ENSGACG00000004911) #24	ENSGACG00000004910 #25	angptl7 (ENSGACG00000004901) #26	mtor (ENSGACG00000004869) #27	ENSGACG00000004864	ENSGACG00000004861	agrn (ENSGACG00000004839) #28	ptpn11b (ENSGACG00000004807) #29	CHST13 (ENSGACG00000004801)	PLXNA1 (ENSGACG00000004780)	ENSGACG00000004778	ENSGACG00000004776	twist3 (ENSGACG00000004773)	VDR (ENSGACG00000004763)
Lumpfish	MODERN SPECIES	22	ENSCLMG00005016266	mib2 (ENSCLMG00005014140)	ubiad1 (ENSCLMG00005014130)	MMP23B (ENSCLMG00005014128)	cdk11b (ENSCLMG00005010941)	ENSCLMG00005010912	szrd1 (ENSCLMG00005010908) #14	atp13a2 (ENSCLMG00005010814) #15	SDHB (ENSCLMG00005010609) #16	ATAD3A (ENSCLMG00005010599)	ENSCLMG00005010592 #17	otud3 (ENSCLMG00005010589) #18	bcas2 (ENSCLMG00005010587) #19	trim33 (ENSCLMG00005010526) #20	slc66a1 (ENSCLMG00005010524) #21	nr1h5 (ENSCLMG00005010508) #22	BRPF3 (ENSCLMG00005010506) #23	ENSCLMG00005010485 #24	ENSCLMG00005010483 #25	angptl7 (ENSCLMG00005010480) #26	mtor (ENSCLMG00005007384) #27	agrn (ENSCLMG00005000370) #28	ptpn11b (ENSCLMG00005000196) #29	RNF223 (ENSCLMG00005000189) #30	CHST13 (ENSCLMG00005000184)	ENSCLMG00005000178	PLXNA1 (ENSCLMG00005000154)	chchd6a (ENSCLMG00005000119)	ENSCLMG00005000106	ENSCLMG00005000091	ENSCLMG00005000067
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00940000160919	ENSGT00940000158097	ENSGT00390000012439	ENSGT00940000161187	ENSGT00940000158459	ENSGT01030000234841	ENSGT00390000005532.l #14	ENSGT00940000159714 #15	ENSGT00390000013558.a.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157064.a.a #26	ENSGT00930000151037 #27	ENSGT00940000158337 #28	ENSGT00940000153876.A #29	ENSGT00940000163259.b #30	ENSGT00950000182931.B.a.b #32	ENSGT00950000183011.c.a.a #33	ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00390000018003.a #36	ENSGT00940000168345 #37	ENSGT01010000222287.A
Channel bull blenny	MODERN SPECIES	21	TTLL10 (ENSCGOG00000007798)	mib2 (ENSCGOG00000007809)	ubiad1 (ENSCGOG00000007922)	MMP23B (ENSCGOG00000007923)	cdk11b (ENSCGOG00000007934)	ENSCGOG00000008057	szrd1 (ENSCGOG00000008063) #14	atp13a2 (ENSCGOG00000008065) #15	SDHB (ENSCGOG00000008150) #16	ATAD3A (ENSCGOG00000008682)	TMEM240 (ENSCGOG00000009486) #17	otud3 (ENSCGOG00000009496) #18	bcas2 (ENSCGOG00000009515) #19	trim33 (ENSCGOG00000009637) #20	slc66a1 (ENSCGOG00000010822) #21	nr1h5 (ENSCGOG00000010825) #22	BRPF3 (ENSCGOG00000010830) #23	MAPK13 (ENSCGOG00000010850) #24	ENSCGOG00000011077 #25	mtor (ENSCGOG00000011183) #27	angptl7 (ENSCGOG00000014940) #26	agrn (ENSCGOG00000014988) #28	ptpn11b (ENSCGOG00000016909) #29	RNF223 (ENSCGOG00000017557) #30	DENND2C (ENSCGOG00000017560) #32	ampd1 (ENSCGOG00000017617) #33	ENSCGOG00000018979 #34	csde1 (ENSCGOG00000019005) #35	SIKE1 (ENSCGOG00000020182) #36	ENSCGOG00000020185 #37	HTR6 (ENSCGOG00000020186)
Pike perch	MODERN SPECIES	7	TTLL10 (ENSSLUG00000001258)	mib2 (ENSSLUG00000000981)	ubiad1 (ENSSLUG00000000885)	MMP23B (ENSSLUG00000000879)	cdk11b (ENSSLUG00000000718)	ENSSLUG00000000660	szrd1 (ENSSLUG00000000656) #14	atp13a2 (ENSSLUG00000000385) #15	SDHB (ENSSLUG00000000241) #16	ENSSLUG00000000201	TMEM240 (ENSSLUG00000000166) #17	otud3 (ENSSLUG00000000162) #18	bcas2 (ENSSLUG00000025821) #19	trim33 (ENSSLUG00000025816) #20	slc66a1 (ENSSLUG00000025813) #21	nr1h5 (ENSSLUG00000025811) #22	BRPF3 (ENSSLUG00000025809) #23	MAPK13 (ENSSLUG00000025806) #24	ENSSLUG00000025800 #25	angptl7 (ENSSLUG00000025795) #26	mtor (ENSSLUG00000025759) #27	agrn (ENSSLUG00000025665) #28	ptpn11b (ENSSLUG00000025566) #29	RNF223 (ENSSLUG00000025560) #30	DENND2C (ENSSLUG00000025554) #32	ampd1 (ENSSLUG00000025520) #33	ENSSLUG00000025478 #34	csde1 (ENSSLUG00000025415) #35	SIKE1 (ENSSLUG00000025370) #36	ENSSLUG00000025369 #37	ENSSLUG00000025368
Tiger tail seahorse	MODERN SPECIES	213	actr5 (ENSHCOG00000002908)	ENSHCOG00000002931	ENSHCOG00000002947	stac3 (ENSHCOG00000002954)	ENSHCOG00000002964	kif5aa (ENSHCOG00000002994)	tgm2a (ENSHCOG00000003547) ##10	szrd1 (ENSHCOG00000003607) #14	atp13a2 (ENSHCOG00000003709) #15	SDHB (ENSHCOG00000003737) #16	TMEM240 (ENSHCOG00000003753) #17	otud3 (ENSHCOG00000003777) #18	bcas2 (ENSHCOG00000003813) #19	trim33 (ENSHCOG00000003888) #20	slc66a1 (ENSHCOG00000003902) #21	nr1h5 (ENSHCOG00000003934) #22	BRPF3 (ENSHCOG00000003967) #23	MAPK13 (ENSHCOG00000003994) #24	ENSHCOG00000004007 #25
Pinecone sodierfish	MODERN SPECIES	21	clcnk (ENSMMDG00005023623)	fam131c (ENSMMDG00005023622)	ENSMMDG00005023616	ENSMMDG00005023611	sult1st5 (ENSMMDG00005023609)	tmem82 (ENSMMDG00005023607)	szrd1 (ENSMMDG00005023604) #14	atp13a2 (ENSMMDG00005023590) #15	SDHB (ENSMMDG00005023562) #16	ATAD3A (ENSMMDG00005023550)	TMEM240 (ENSMMDG00005023544) #17	otud3 (ENSMMDG00005023542) #18	bcas2 (ENSMMDG00005023541) #19	trim33 (ENSMMDG00005023394) #20	slc66a1 (ENSMMDG00005023377) #21	nr1h5 (ENSMMDG00005023371) #22	BRPF3 (ENSMMDG00005023365) #23	MAPK13 (ENSMMDG00005023359) #24	ENSMMDG00005023357 #25	angptl7 (ENSMMDG00005023356) #26	mtor (ENSMMDG00005022828) #27	agrn (ENSMMDG00005022344) #28	ptpn11b (ENSMMDG00005022326) #29	RNF223 (ENSMMDG00005022323) #30	ENSMMDG00005022321	DENND2C (ENSMMDG00005022313) #32	ampd1 (ENSMMDG00005021870) #33	ENSMMDG00005021853 #34	csde1 (ENSMMDG00005018036) #35	SIKE1 (ENSMMDG00005017938) #36	ENSMMDG00005017936 #37
Cod	MODERN SPECIES		ENSGMOG00000003962	ENSGMOG00000036372	ENSGMOG00000027462	fam50a (ENSGMOG00000004783)	ENSGMOG00000028311	sars1 (ENSGMOG00000004761)	ENSGMOG00000004749	ENSGMOG00000004729	ENSGMOG00000004659	krt18a.2 (ENSGMOG00000028474)	krt18a.1 (ENSGMOG00000000117)	krt8 (ENSGMOG00000014429)	bcas2 (ENSGMOG00000014357) #19	trim33 (ENSGMOG00000016005) #20	slc66a1 (ENSGMOG00000015992) #21	nr1h5 (ENSGMOG00000015966) #22	ENSGMOG00000026487 #23	ENSGMOG00000015911 #24	ENSGMOG00000008404	ENSGMOG00000008405	ENSGMOG00000008407	ENSGMOG00000008410	ENSGMOG00000036919	NADK (ENSGMOG00000008413)	ENSGMOG00000018785	ENSGMOG00000003596	ENSGMOG00000022275	ENSGMOG00000026474	ENSGMOG00000025158	ENSGMOG00000015826	ENSGMOG00000022175
Protacanthopterygii	ANCESTRAL SPECIES	89	ENSGT00730000111059.b	ENSGT00400000023987.d #17	ENSGT00390000016392 #18	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT00940000157037.a.d	ENSGT00940000168269	ENSGT00390000018003.a #36	ENSGT00390000016950 #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000165254.c.b	ENSGT00940000166720.c	ENSGT00390000008714.a	ENSGT00940000155311.C.d	ENSGT00940000164248.b.a	ENSGT00940000153541.B.k	ENSGT00390000016016.B	ENSGT00950000182945.b.a.a.a.b.b.d	ENSGT00390000003022	ENSGT00440000038972	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a	ENSGT00940000159001
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	166	ENSGT00390000005532.l #14	ENSGT00390000013558.a.b.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d.d #17	ENSGT00390000016392.p #18	ENSGT00940000160734.d.d	ENSGT00390000001400	ENSGT00940000154484.A	ENSGT00390000018003.a #36	ENSGT00390000016950.ob #35	ENSGT00950000183011.c.a.a.f #33	ENSGT00950000182931.B.a.b.j #32	ENSGT00390000014494.xb #19	ENSGT00940000156361.B.f #20	ENSGT00390000003344.f #21	ENSGT00940000166498.a #22	ENSGT00940000165254.c.b.c	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00950000183145.E	ENSGT00390000008714.a.y	ENSGT00940000155311.C.d.c	ENSGT00940000164248.b.a.c	ENSGT00940000153541.B.k	ENSGT00390000016016.B	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000003022.c	ENSGT00440000038972.f	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a.l
Salmoninae_a	ANCESTRAL SPECIES	14	ENSGT00390000005532.l #14	ENSGT00390000013558.a.b.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d.d #17	ENSGT00390000016392.p #18	ENSGT00940000160734.d.d	ENSGT00390000001400	ENSGT00940000154484.A	ENSGT00390000018003.a #36	ENSGT00390000016950.ob #35	ENSGT00950000183011.c.a.a.f #33	ENSGT00950000182931.B.a.b.j #32	ENSGT00390000014494.xb #19	ENSGT00940000156361.B.f #20	ENSGT00390000003344.f #21	ENSGT00940000166498.a #22	ENSGT00940000165254.c.b.c	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00390000008714.a.y	ENSGT00940000155311.C.d.c	ENSGT00940000164248.b.a.c	ENSGT00940000153541.B.k	ENSGT00390000016016.B	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000003022.c	ENSGT00440000038972.f	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a.k.a.b	ENSGT00940000159001
Salmo	ANCESTRAL SPECIES	16	ENSGT00390000005532.l #14	ENSGT00390000013558.a.b.b #16	ENSGT00730000111059.b	ENSGT00400000023987.d.d #17	ENSGT00390000016392.p #18	ENSGT00940000160734.d.d	ENSGT00390000001400	ENSGT00940000154484.A	ENSGT00390000018003.a #36	ENSGT00390000016950.ob #35	ENSGT00950000183011.c.a.a.f #33	ENSGT00950000182931.B.a.b.j #32	ENSGT00390000014494.xb #19	ENSGT00940000156361.B.f #20	ENSGT00390000003344.f #21	ENSGT00940000166498.a #22	ENSGT00940000165254.c.b.c	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00390000008714.a.y	ENSGT00940000155311.C.d.c	ENSGT00940000164248.b.a.c	ENSGT00940000153541.B.k	ENSGT00390000016016.B	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000003022.c	ENSGT00440000038972.f	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a.l	ENSGT00940000159001
River trout	MODERN SPECIES	20	SDHB (ENSSTUG00000018813) #16	ATAD3A (ENSSTUG00000018854)	TMEM240 (ENSSTUG00000018984) #17	otud3 (ENSSTUG00000018995) #18	ENSSTUG00000019013	vwa1 (ENSSTUG00000019018)	TMCO4 (ENSSTUG00000019031)	ENSSTUG00000019100	SIKE1 (ENSSTUG00000019109) #36	csde1 (ENSSTUG00000019251) #35	ampd1 (ENSSTUG00000023265) #33	DENND2C (ENSSTUG00000026891) #32	bcas2 (ENSSTUG00000026929) #19	trim33 (ENSSTUG00000026996) #20	slc66a1 (ENSSTUG00000029471) #21	nr1h5 (ENSSTUG00000029484) #22	atp2b3a (ENSSTUG00000029524)	ENSSTUG00000029849	ENSSTUG00000029864	dedd (ENSSTUG00000029868)	bgna (ENSSTUG00000029875)	si:dkey-6n6.1 (ENSSTUG00000029886)	tnnc1b (ENSSTUG00000029902)	tpk2 (ENSSTUG00000029915)	ENSSTUG00000029927	ndufb11 (ENSSTUG00000029961)	ENSSTUG00000029984	tmem201 (ENSSTUG00000030238)	pik3cd (ENSSTUG00000030393)	ctnnbip1 (ENSSTUG00000033967)	clstn1 (ENSSTUG00000034081)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000050560 #16	ENSSSAG00000049688	ENSSSAG00000107752 #17	otud3 (ENSSSAG00000049625) #18	vwa1 (ENSSSAG00000049613)	tmco4 (ENSSSAG00000048800)	ENSSSAG00000048754	sike1 (ENSSSAG00000088203) #36	CSDE1 (ENSSSAG00000048052) #35	ampd1 (ENSSSAG00000043594) #33	dennd2c (ENSSSAG00000043382) #32	trim33 (ENSSSAG00000025557) #20	ENSSSAG00000114266	pqlc2 (ENSSSAG00000023170) #21	ENSSSAG00000119583	nr1h5 (ENSSSAG00000022951) #22	ENSSSAG00000085339	atp2b3a (ENSSSAG00000007463)	ENSSSAG00000007370	dedd (ENSSSAG00000007365)	bgna (ENSSSAG00000105101)	ENSSSAG00000097196	si:dkey-6n6.1 (ENSSSAG00000007349)	ENSSSAG00000007332	tpk2 (ENSSSAG00000007310)	ENSSSAG00000007302	ENSSSAG00000007245	tmem201 (ENSSSAG00000007232)	pik3cd (ENSSSAG00000005984)	clstn1 (ENSSSAG00000080237)	lzic (ENSSSAG00000080170)
Oncorhynchus	ANCESTRAL SPECIES	20	ENSGT00500000045021.d.d	ENSGT00390000005532.l #14	ENSGT00730000111059.b	ENSGT00400000023987.d.d #17	ENSGT00390000016392.p #18	ENSGT00940000160734.d.d	ENSGT00390000001400	ENSGT00940000164988.f	ENSGT00390000018003.a #36	ENSGT00390000016950.ob #35	ENSGT00950000183011.c.a.a.f #33	ENSGT00950000182931.B.a.b.j #32	ENSGT00390000014494.xb #19	ENSGT00940000156361.B.f #20	ENSGT00390000003344.f #21	ENSGT00940000166498.a #22	ENSGT00940000165254.c.b.c	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00940000166720.c.b	ENSGT00390000008714.a.y	ENSGT00940000155311.C.d.c	ENSGT00940000164248.b.a.c	ENSGT00940000153541.B.k	ENSGT00390000016016.B	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000003022.c	ENSGT00440000038972.f	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a.k.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00500000045021.d.d	ENSGT00390000005532.l #14	ENSGT00730000111059.b	ENSGT00400000023987.d.d #17	ENSGT00390000016392.p #18	ENSGT00940000160734.d.d	ENSGT00390000001400	ENSGT00940000164988.f	ENSGT00390000018003.a #36	ENSGT00390000016950.ob #35	ENSGT00950000183011.c.a.a.f #33	ENSGT00950000182931.B.a.b.j #32	ENSGT00390000014494.xb #19	ENSGT00940000156361.B.f #20	ENSGT00390000003344.f #21	ENSGT00940000166498.a #22	ENSGT00940000165254.c.b.c	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00390000008714.a.y	ENSGT00940000155311.C.d.c	ENSGT00940000164248.b.a.c	ENSGT00940000153541.B.k	ENSGT00390000016016.B	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000003022.c	ENSGT00440000038972.f	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a.k.a.a	ENSGT00940000159001
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	7	tmem82 (ENSOTSG00005008058)	szrd1 (ENSOTSG00005008056) #14	ATAD3A (ENSOTSG00005008055)	TMEM240 (ENSOTSG00005008053) #17	otud3 (ENSOTSG00005008052) #18	vwa1 (ENSOTSG00005008051)	TMCO4 (ENSOTSG00005008050)	ENSOTSG00005008049	SIKE1 (ENSOTSG00005008048) #36	csde1 (ENSOTSG00005008042) #35	ampd1 (ENSOTSG00005005519) #33	DENND2C (ENSOTSG00005005510) #32	bcas2 (ENSOTSG00005005508) #19	trim33 (ENSOTSG00005002265) #20	slc66a1 (ENSOTSG00005002220) #21	nr1h5 (ENSOTSG00005002219) #22	atp2b3a (ENSOTSG00005002099)	ENSOTSG00005041875	dedd (ENSOTSG00005041874)	bgna (ENSOTSG00005041873)	si:dkey-6n6.1 (ENSOTSG00005041871)	tpk2 (ENSOTSG00005041870)	ENSOTSG00005041869	ndufb11 (ENSOTSG00005041868)	ENSOTSG00005041865	tmem201 (ENSOTSG00005041862)	pik3cd (ENSOTSG00005036248)	ctnnbip1 (ENSOTSG00005036206)	clstn1 (ENSOTSG00005033315)	lzic (ENSOTSG00005033306)	nmnat1 (ENSOTSG00005033304)
Chinook salmon	MODERN SPECIES	37	tmem82 (ENSOTSG00005031109)	szrd1 (ENSOTSG00005031112) #14	ATAD3A (ENSOTSG00005031116)	TMEM240 (ENSOTSG00005031178) #17	otud3 (ENSOTSG00005031179) #18	vwa1 (ENSOTSG00005031181)	TMCO4 (ENSOTSG00005031184)	ENSOTSG00005031187	SIKE1 (ENSOTSG00005031191) #36	csde1 (ENSOTSG00005031225) #35	ampd1 (ENSOTSG00005038526) #33	DENND2C (ENSOTSG00005042936) #32	bcas2 (ENSOTSG00005042938) #19	trim33 (ENSOTSG00005042943) #20	slc66a1 (ENSOTSG00005043237) #21	nr1h5 (ENSOTSG00005043242) #22	atp2b3a (ENSOTSG00005043249)	ENSOTSG00005043516	dedd (ENSOTSG00005043522)	bgna (ENSOTSG00005043524)	si:dkey-6n6.1 (ENSOTSG00005043532)	tnnc1b (ENSOTSG00005043534)	tpk2 (ENSOTSG00005043535)	ENSOTSG00005043536	ndufb11 (ENSOTSG00005043538)	ENSOTSG00005043540	tmem201 (ENSOTSG00005043558)	pik3cd (ENSOTSG00005043597)	ctnnbip1 (ENSOTSG00005045539)	clstn1 (ENSOTSG00005045540)	lzic (ENSOTSG00005046239)
Coho salmon	MODERN SPECIES	8	ENSOKIG00005030430	szrd1 (ENSOKIG00005030415) #14	ATAD3A (ENSOKIG00005030311)	TMEM240 (ENSOKIG00005030252) #17	otud3 (ENSOKIG00005030224) #18	vwa1 (ENSOKIG00005030211)	ENSOKIG00005030087	ENSOKIG00005030049	SIKE1 (ENSOKIG00005030031) #36	CSDE1 (ENSOKIG00005028925) #35	ampd1 (ENSOKIG00005025384) #33	DENND2C (ENSOKIG00005024971) #32	bcas2 (ENSOKIG00005024913) #19	trim33 (ENSOKIG00005024124) #20	slc66a1 (ENSOKIG00005023974) #21	nr1h5 (ENSOKIG00005023937) #22	atp2b3a (ENSOKIG00005023460)	ENSOKIG00005023421	dedd (ENSOKIG00005023393)	bgna (ENSOKIG00005023311)	si:dkey-6n6.1 (ENSOKIG00005023298)	tpk2 (ENSOKIG00005023279)	ENSOKIG00005023219	ENSOKIG00005023119	ndufb11 (ENSOKIG00005023095)	tmem201 (ENSOKIG00005023079)	pik3cd (ENSOKIG00005019186)	ctnnbip1 (ENSOKIG00005018953)	clstn1 (ENSOKIG00005015716)	lzic (ENSOKIG00005015522)	nmnat1 (ENSOKIG00005015509)
Rainbow trout	MODERN SPECIES	30	tmem82 (ENSOMYG00000040575)	szrd1 (ENSOMYG00000060141) #14	ENSOMYG00000040535	ENSOMYG00000040487 #17	otud3 (ENSOMYG00000040481) #18	vwa1 (ENSOMYG00000040473)	ENSOMYG00000040370	ENSOMYG00000040314	ENSOMYG00000040303 #36	CSDE1 (ENSOMYG00000040030) #35	ampd1 (ENSOMYG00000034377) #33	DENND2C (ENSOMYG00000039900) #32	bcas2 (ENSOMYG00000061830) #19	trim33 (ENSOMYG00000032150) #20	slc66a1 (ENSOMYG00000031731) #21	nr1h5 (ENSOMYG00000031711) #22	ENSOMYG00000031339	ENSOMYG00000031207	ugt5e1 (ENSOMYG00000064227)	dedd (ENSOMYG00000031198)	bgna (ENSOMYG00000031157)	si:dkey-6n6.1 (ENSOMYG00000031124)	ENSOMYG00000031114	tpk2 (ENSOMYG00000031104)	ENSOMYG00000031085	ENSOMYG00000058175	ENSOMYG00000031076	ENSOMYG00000030982	tmem201 (ENSOMYG00000030924)	pik3cd (ENSOMYG00000027661)	ctnnbip1 (ENSOMYG00000026962)
Huchen	MODERN SPECIES	37	szrd1 (ENSHHUG00000021370) #14	SDHB (ENSHHUG00000021205) #16	ATAD3A (ENSHHUG00000021100)	TMEM240 (ENSHHUG00000021088) #17	otud3 (ENSHHUG00000021079) #18	vwa1 (ENSHHUG00000021071)	TMCO4 (ENSHHUG00000021040)	ENSHHUG00000021025	SIKE1 (ENSHHUG00000021017) #36	csde1 (ENSHHUG00000020222) #35	ampd1 (ENSHHUG00000019906) #33	DENND2C (ENSHHUG00000019892) #32	bcas2 (ENSHHUG00000019878) #19	trim33 (ENSHHUG00000019655) #20	slc66a1 (ENSHHUG00000019646) #21	nr1h5 (ENSHHUG00000019636) #22	atp2b3a (ENSHHUG00000019305)	ENSHHUG00000019279	ENSHHUG00000019271	dedd (ENSHHUG00000019264)	bgna (ENSHHUG00000019257)	ENSHHUG00000019250	tpk2 (ENSHHUG00000019213)	ENSHHUG00000019020	ENSHHUG00000018840	tmem201 (ENSHHUG00000018823)	pik3cd (ENSHHUG00000017171)	ctnnbip1 (ENSHHUG00000017147)	ENSHHUG00000017132	clstn1 (ENSHHUG00000017074)	ENSHHUG00000017060
Salmoninae	ANCESTRAL SPECIES	29									ENSGT00390000016950.nb #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a.e #33	ENSGT00950000182931.B.a.b.i #32	ENSGT00390000014494.wb #19	ENSGT00940000156361.B.e #20	ENSGT00390000003344.e #21	ENSGT00940000166498.b #22	ENSGT00940000165254.c.b.d	ENSGT00940000162108.b.a.a.b	ENSGT00940000166720.c	ENSGT00390000008714.a.z	ENSGT00940000155311.C.d.d	ENSGT00940000164248.b.a.d	ENSGT00940000153541.B.l	ENSGT01010000223737	ENSGT00950000182945.b.a.a.a.b.b.d.b	ENSGT00390000003022.d	ENSGT00440000038972.e	ENSGT00940000159173.a	ENSGT00940000164911.f.b	ENSGT00390000003809.b	ENSGT00940000166636.e
Huchen	MODERN SPECIES	1891									csde1 (ENSHHUG00000024637) #35	ENSHHUG00000024753 #34	ampd1 (ENSHHUG00000024760) #33	DENND2C (ENSHHUG00000024949) #32	bcas2 (ENSHHUG00000024972) #19	trim33 (ENSHHUG00000025005) #20	slc66a1 (ENSHHUG00000025791) #21	nr1h5 (ENSHHUG00000025798) #22	atp2b3a (ENSHHUG00000025831)	ENSHHUG00000026934	ENSHHUG00000026939
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00500000045021.d.c	ENSGT00940000159714 #15	ENSGT00390000013558.a.b.a #16	ENSGT00400000023987.d.c #17	ENSGT00390000016392.o #18	ENSGT00940000160734.d.c	ENSGT00940000164988.e	ENSGT00940000168345 #37	ENSGT00390000016950.nb #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a.e #33	ENSGT00950000182931.B.a.b.i #32	ENSGT00390000014494.wb #19	ENSGT00940000156361.B.e #20	ENSGT00390000003344.e #21	ENSGT00940000166498.b #22	ENSGT00940000165254.c.b.d	ENSGT00940000162108.b.a.a.b	ENSGT00950000183145.B.a.a.a.b.b.a.a	ENSGT00940000166720.c	ENSGT00390000008714.a.z	ENSGT00940000155311.C.d.d	ENSGT00940000164248.b.a.d	ENSGT00940000153541.B.l	ENSGT01010000223737	ENSGT00950000182945.b.a.a.a.b.b.d.b	ENSGT00390000003022.d	ENSGT00440000038972.e	ENSGT00940000159173.a	ENSGT00940000164911.f.b	ENSGT00390000003809.b
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00500000045021.d.c	ENSGT00940000159714 #15	ENSGT00390000013558.a.b.a #16	ENSGT00400000023987.d.c #17	ENSGT00390000016392.o #18	ENSGT00940000160734.d.c	ENSGT00940000164988.e	ENSGT00940000168345 #37	ENSGT00390000016950.nb #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a.e #33	ENSGT00950000182931.B.a.b.i #32	ENSGT00390000014494.wb #19	ENSGT00940000156361.B.e #20	ENSGT00390000003344.e #21	ENSGT00940000166498.b #22	ENSGT00940000165254.c.b.d	ENSGT00940000162108.b.a.a.b	ENSGT00950000183145.B.a.a.a.b.b.a.a	ENSGT00940000166720.c.a	ENSGT00390000008714.a.z	ENSGT00940000155311.C.d.d	ENSGT00940000164248.b.a.d	ENSGT00940000153541.B.l	ENSGT01010000223737	ENSGT00950000182945.b.a.a.a.b.b.d.b	ENSGT00390000003022.d	ENSGT00440000038972.e	ENSGT00940000159173.a	ENSGT00940000164911.f.b	ENSGT00390000003809.b
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000157087.a.b.r.a	ENSGT00500000045021.d.c	ENSGT00940000159714 #15	ENSGT00390000013558.a.b.a #16	ENSGT00400000023987.d.c #17	ENSGT00390000016392.o #18	ENSGT00940000160734.d.c	ENSGT00940000164988.e	ENSGT00940000168345 #37	ENSGT00390000016950.nb #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a.e #33	ENSGT00390000014494.wb #19	ENSGT00940000156361.B.e #20	ENSGT00390000003344.e #21	ENSGT00940000166498.b #22	ENSGT00940000165254.c.b.d	ENSGT00940000162108.b.a.a.b	ENSGT00950000183145.B.a.a.a.a.d.a	ENSGT00940000166720.c.a	ENSGT00390000008714.a.z	ENSGT00940000155311.C.d.d	ENSGT00940000164248.b.a.d	ENSGT00940000153541.B.l	ENSGT01010000223737	ENSGT00950000182945.b.a.a.a.b.b.d.b	ENSGT00390000003022.d	ENSGT00440000038972.e	ENSGT00940000159173.a	ENSGT00940000164911.f.b	ENSGT00390000003809.b
Coho salmon	MODERN SPECIES	16	tmem82 (ENSOKIG00005028696)	atp13a2 (ENSOKIG00005028725) #15	SDHB (ENSOKIG00005029053) #16	ENSOKIG00005029135	TMEM240 (ENSOKIG00005029151) #17	otud3 (ENSOKIG00005029170) #18	ENSOKIG00005029184	ENSOKIG00005029199	ENSOKIG00005029250 #37	csde1 (ENSOKIG00005029477) #35	ENSOKIG00005033727 #34	ampd1 (ENSOKIG00005033795) #33	bcas2 (ENSOKIG00005035501) #19	trim33 (ENSOKIG00005035661) #20	slc66a1 (ENSOKIG00005038499) #21	nr1h5 (ENSOKIG00005038519) #22	ENSOKIG00005038591	ENSOKIG00005038884	ENSOKIG00005038896	ugt5e1 (ENSOKIG00005038913)	dedd (ENSOKIG00005038920)	bgna (ENSOKIG00005038938)	si:dkey-6n6.1 (ENSOKIG00005038958)	tnnc1b (ENSOKIG00005039030)	ENSOKIG00005039112	ENSOKIG00005039170	ndufb11 (ENSOKIG00005039225)	ENSOKIG00005039252	tbc1d25 (ENSOKIG00005039430)	nt5dc2 (ENSOKIG00005039515)	ccdc22 (ENSOKIG00005039987)
Chinook salmon	MODERN SPECIES	14	SPEN (ENSOTSG00005014794)	tmem82 (ENSOTSG00005014796)	atp13a2 (ENSOTSG00005014798) #15	SDHB (ENSOTSG00005016660) #16	TMEM240 (ENSOTSG00005016663) #17	otud3 (ENSOTSG00005016665) #18	vwa1 (ENSOTSG00005016667)	ENSOTSG00005016668	ENSOTSG00005016669 #37	csde1 (ENSOTSG00005016703) #35	ENSOTSG00005025760 #34	ampd1 (ENSOTSG00005025785) #33	bcas2 (ENSOTSG00005025940) #19	trim33 (ENSOTSG00005025969) #20	slc66a1 (ENSOTSG00005030250) #21	nr1h5 (ENSOTSG00005030253) #22	atp2b3a (ENSOTSG00005030255)	ENSOTSG00005030361	ENSOTSG00005030362	ENSOTSG00005030363	ugt5e1 (ENSOTSG00005030364)	dedd (ENSOTSG00005030365)	bgna (ENSOTSG00005030367)	si:dkey-6n6.1 (ENSOTSG00005030370)	tnnc1b (ENSOTSG00005030372)	ENSOTSG00005030374	ENSOTSG00005030376	ndufb11 (ENSOTSG00005034962)	ENSOTSG00005034964	tbc1d25 (ENSOTSG00005034966)	nt5dc2 (ENSOTSG00005034986)
Rainbow trout	MODERN SPECIES	7	tmem82 (ENSOMYG00000043985)	atp13a2 (ENSOMYG00000005268) #15	DHSB (ENSOMYG00000005473) #16	ENSOMYG00000005510 #17	ENSOMYG00000005553 #18	ENSOMYG00000005577	ENSOMYG00000058425	ENSOMYG00000005690 #37	CSDE1 (ENSOMYG00000006470) #35	ENSOMYG00000007006 #34	ampd1 (ENSOMYG00000007327) #33	ENSOMYG00000007569 #32	bcas2 (ENSOMYG00000007601) #19	trim33 (ENSOMYG00000008606) #20	slc66a1 (ENSOMYG00000010662) #21	nr1h5 (ENSOMYG00000010673) #22	ENSOMYG00000010761	ENSOMYG00000010978	ugt5e1 (ENSOMYG00000011300)	dedd (ENSOMYG00000011301)	ENSOMYG00000051380	bgna (ENSOMYG00000011324)	si:dkey-6n6.1 (ENSOMYG00000011334)	ENSOMYG00000011349	ENSOMYG00000011367	ENSOMYG00000011401	ENSOMYG00000011406	ENSOMYG00000011408	tbc1d25 (ENSOMYG00000011487)	nt5dc2 (ENSOMYG00000011687)	ccdc22 (ENSOMYG00000015057)
Salmo	ANCESTRAL SPECIES	4	ENSGT00500000045021.d.c	ENSGT00940000159714 #15	ENSGT00390000013558.a.b.a #16	ENSGT00400000023987.d.c #17	ENSGT00390000016392.o #18	ENSGT00940000160734.d.c	ENSGT00940000164988.e	ENSGT00940000168345 #37	ENSGT00390000016950.nb #35	ENSGT00950000182839.B.a.b #34	ENSGT00950000183011.c.a.a.e #33	ENSGT00950000182931.B.a.b.i #32	ENSGT00390000014494.wb #19	ENSGT00940000156361.B.e #20	ENSGT00390000003344.e #21	ENSGT00940000166498.b #22	ENSGT00940000165254.c.b.d	ENSGT00940000162108.b.a.a.b	ENSGT00950000183145.B.a.a.a.b.b.a.a	ENSGT00940000166720.c	ENSGT00390000008714.a.z	ENSGT00940000155311.C.d.d	ENSGT00940000164248.b.a.d	ENSGT00940000153541.B.l	ENSGT01010000223737	ENSGT00950000182945.b.a.a.a.b.b.d.b	ENSGT00390000003022.d	ENSGT00440000038972.e	ENSGT00940000159173.a	ENSGT00940000164911.f.b	ENSGT00390000003809.b
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000115861	atp13a2 (ENSSSAG00000079163) #15	ENSSSAG00000038671 #16	ENSSSAG00000098430 #17	ENSSSAG00000040009 #18	ENSSSAG00000040110	ENSSSAG00000040131	ENSSSAG00000100340 #37	CSDE1 (ENSSSAG00000040234) #35	ENSSSAG00000041387 #34	ampd1 (ENSSSAG00000041446) #33	DENND2C (ENSSSAG00000044715) #32	BCAS2 (ENSSSAG00000044819) #19	trim33 (ENSSSAG00000044852) #20	slc66a1 (ENSSSAG00000046165) #21	nr1h5 (ENSSSAG00000046197) #22	atp2b3a (ENSSSAG00000046326)	ENSSSAG00000050244	ENSSSAG00000050294	dedd (ENSSSAG00000050645)	ugt5e1 (ENSSSAG00000120375)	bgna (ENSSSAG00000050657)	si:dkey-6n6.1 (ENSSSAG00000050669)	TNNC1 (ENSSSAG00000050683)	ENSSSAG00000050694	ENSSSAG00000090804	ENSSSAG00000103887	ENSSSAG00000050723	ENSSSAG00000050710	tbc1d25 (ENSSSAG00000050744)	nt5dc2 (ENSSSAG00000050813)
River trout	MODERN SPECIES	23	tmem82 (ENSSTUG00000013669)	atp13a2 (ENSSTUG00000013699) #15	SDHB (ENSSTUG00000013847) #16	TMEM240 (ENSSTUG00000013941) #17	otud3 (ENSSTUG00000013950) #18	vwa1 (ENSSTUG00000013963)	ENSSTUG00000013975	ENSSTUG00000013986 #37	csde1 (ENSSTUG00000014028) #35	ENSSTUG00000015046 #34	ampd1 (ENSSTUG00000015125) #33	DENND2C (ENSSTUG00000017090) #32	bcas2 (ENSSTUG00000017147) #19	trim33 (ENSSTUG00000017220) #20	slc66a1 (ENSSTUG00000017887) #21	nr1h5 (ENSSTUG00000017892) #22	atp2b3a (ENSSTUG00000018031)	ENSSTUG00000021047	ugt5e1 (ENSSTUG00000021512)	dedd (ENSSTUG00000021516)	bgna (ENSSTUG00000021521)	si:dkey-6n6.1 (ENSSTUG00000021535)	tnnc1b (ENSSTUG00000021543)	ENSSTUG00000021555	ENSSTUG00000021577	ndufb11 (ENSSTUG00000021599)	ENSSTUG00000021614	tbc1d25 (ENSSTUG00000021677)	nt5dc2 (ENSSTUG00000021777)	ccdc22 (ENSSTUG00000023508)	slc38a5b (ENSSTUG00000023531)
Northern pike	MODERN SPECIES	11	TMEM240 (ENSELUG00000015718) #17	otud3 (ENSELUG00000015694) #18	vwa1 (ENSELUG00000015669)	ENSELUG00000031519	TMCO4 (ENSELUG00000015634)	ENSELUG00000015613	micos10 (ENSELUG00000015601)	SIKE1 (ENSELUG00000000578) #36	csde1 (ENSELUG00000015507) #35	ENSELUG00000015283 #34	ampd1 (ENSELUG00000015271) #33	DENND2C (ENSELUG00000015207) #32	bcas2 (ENSELUG00000015179) #19	trim33 (ENSELUG00000015119) #20	slc66a1 (ENSELUG00000014931) #21	nr1h5 (ENSELUG00000014805) #22	atp2b3a (ENSELUG00000000541)	ugt5e1 (ENSELUG00000000522)	dedd (ENSELUG00000014388)	bgna (ENSELUG00000014324)	si:dkey-6n6.1 (ENSELUG00000014312)	tnnc1b (ENSELUG00000014239)	tpk2 (ENSELUG00000014181)	ENSELUG00000014150	ndufb11 (ENSELUG00000028470)	cfp (ENSELUG00000014011)	tmem201 (ENSELUG00000013995)	pik3cd (ENSELUG00000013961)	ctnnbip1 (ENSELUG00000013896)	clstn1 (ENSELUG00000013846)	lzic (ENSELUG00000013697)
Otomorpha	ANCESTRAL SPECIES	83								ENSGT00950000182839.B.a.b #34	ENSGT00390000016950 #35	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00950000183145.A.b.b	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a	ENSGT00940000156776.c	ENSGT00940000155869	ENSGT00390000011863.c
Clupeiformes	ANCESTRAL SPECIES	80							ENSGT00980000199713	ENSGT00390000016950 #35	ENSGT00950000182839.B.a.b #34	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00950000183145.A.b.b	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a	ENSGT00940000156776.c	ENSGT00940000155869	ENSGT00390000011863.c
Denticle herring	MODERN SPECIES	1	tpd52l2a (ENSDCDG00000035276)	ppdpfa (ENSDCDG00000035275)	ENSDCDG00000035268	ENSDCDG00000035256	dnmt3ba (ENSDCDG00000035027)	mapre1a (ENSDCDG00000034952)	ENSDCDG00000034950	csde1 (ENSDCDG00000034580) #35	ENSDCDG00000034522 #34	nras (ENSDCDG00000034521)	ampd1 (ENSDCDG00000034239) #33	DENND2C (ENSDCDG00000034183) #32	bcas2 (ENSDCDG00000034162) #19	trim33 (ENSDCDG00000034137) #20	slc66a1 (ENSDCDG00000034129) #21	nr1h5 (ENSDCDG00000034128) #22	BRPF3 (ENSDCDG00000034092) #23	MAPK13 (ENSDCDG00000033839) #24	ENSDCDG00000033816	ENSDCDG00000033813 #25	TBC1D22B (ENSDCDG00000033801)	pim1 (ENSDCDG00000033790)	ENSDCDG00000033784	ENSDCDG00000033778	kcnd1 (ENSDCDG00000033776)	gripap1 (ENSDCDG00000033747)	ptpn18 (ENSDCDG00000033724)	plxna3 (ENSDCDG00000032471)	ENSDCDG00000032001	slc6a8 (ENSDCDG00000030465)	bcap31 (ENSDCDG00000030429)
Atlantic herring	MODERN SPECIES	20	opn7b (ENSCHAG00000022679)	slc9a8 (ENSCHAG00000022479)	b4galt5 (ENSCHAG00000022268)	EMILIN3 (ENSCHAG00000022249)	ENSCHAG00000022245	ENSCHAG00000022232	ENSCHAG00000022134	ENSCHAG00000022130	csde1 (ENSCHAG00000020279) #35	nras (ENSCHAG00000020193)	ampd1 (ENSCHAG00000019158) #33	DENND2C (ENSCHAG00000019082) #32	bcas2 (ENSCHAG00000019048) #19	trim33 (ENSCHAG00000018593) #20	slc66a1 (ENSCHAG00000018565) #21	nr1h5 (ENSCHAG00000018560) #22	BRPF3 (ENSCHAG00000018370) #23	MAPK13 (ENSCHAG00000017614) #24	ENSCHAG00000017578 #25	TBC1D22B (ENSCHAG00000017033)	pim1 (ENSCHAG00000016969)	ENSCHAG00000016925	kcnd1 (ENSCHAG00000016901)	gripap1 (ENSCHAG00000016485)	ENSCHAG00000016460	ptpn18 (ENSCHAG00000016444)	plxna3 (ENSCHAG00000010924)	ENSCHAG00000010690	slc6a8 (ENSCHAG00000009838)	ENSCHAG00000009804	ENSCHAG00000009780
Otophysi	ANCESTRAL SPECIES	127							ENSGT00530000063735.b	ENSGT00940000158064	ENSGT00940000160326.d	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00950000183145.A.b.b	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a	ENSGT00940000156776.c	ENSGT00940000155869	ENSGT00390000011863.c
Characiphysae	ANCESTRAL SPECIES	41	ENSGT00950000183180.a.a	ENSGT00940000161076	ENSGT00940000155976.b.a.a	ENSGT00740000116956	ENSGT00940000159976	ENSGT00940000170611	ENSGT00530000063735.b	ENSGT00940000158064	ENSGT00940000160326.d	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00950000183145.A.b.b	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a	ENSGT00940000156776.c	ENSGT00940000155869	ENSGT00390000011863.c
Channel catfish	MODERN SPECIES	24	traf1 (ENSIPUG00000010065)	fibcd1 (ENSIPUG00000010104)	FIBCD1 (ENSIPUG00000010156)	ENSIPUG00000010227	SLC2A6 (ENSIPUG00000010267)	stkld1 (ENSIPUG00000010316)	ENSIPUG00000010341	plekha2 (ENSIPUG00000010372)	ASB13 (ENSIPUG00000010393)	nras (ENSIPUG00000010414)	ampd1 (ENSIPUG00000010509) #33	dennd2c (ENSIPUG00000010599) #32	bcas2 (ENSIPUG00000010649) #19	trim33 (ENSIPUG00000010731) #20	slc66a1 (ENSIPUG00000010811) #21	Nr1h4 (ENSIPUG00000010855) #22	BRPF3 (ENSIPUG00000010904) #23	ENSIPUG00000010985 #24	ENSIPUG00000011014 #25	tbc1d22b (ENSIPUG00000011021)	PIM3 (ENSIPUG00000011062)	ENSIPUG00000011089	ENSIPUG00000011105	kcnd1 (ENSIPUG00000011155)	Gripap1 (ENSIPUG00000011217)	Ptpn18 (ENSIPUG00000011444)	plxna3 (ENSIPUG00000011528)	ENSIPUG00000011620	Slc6a8 (ENSIPUG00000011661)	bcap31 (ENSIPUG00000011713)	slc35a2 (ENSIPUG00000011733)
Characiphysae_b	ANCESTRAL SPECIES	100	ENSGT00940000155853.d.b	ENSGT00950000183180.a.a	ENSGT00940000161076	ENSGT00940000155976.b.a.a	ENSGT00740000116956	ENSGT00940000159976	ENSGT00530000063735.b	ENSGT00940000158064	ENSGT00940000160326.d	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a
Electric eel	MODERN SPECIES	145	endog (ENSEEEG00000021025)	DAB2IP (ENSEEEG00000021026)	phf19 (ENSEEEG00000021032)	traf1 (ENSEEEG00000021072)	FIBCD1 (ENSEEEG00000021075)	SLC2A6 (ENSEEEG00000021077)	ENSEEEG00000021082	plekha2 (ENSEEEG00000021087)	ASB13 (ENSEEEG00000021104)	nras (ENSEEEG00000021105)	ampd1 (ENSEEEG00000021132) #33	DENND2C (ENSEEEG00000021799) #32	bcas2 (ENSEEEG00000021803) #19	trim33 (ENSEEEG00000021867) #20	slc66a1 (ENSEEEG00000022275) #21	nr1h5 (ENSEEEG00000022276) #22	BRPF3 (ENSEEEG00000022283) #23	MAPK13 (ENSEEEG00000022296) #24	ENSEEEG00000022405 ##25	TBC1D22B (ENSEEEG00000022408)	pim1 (ENSEEEG00000022420)
Characoidei	ANCESTRAL SPECIES	99	ENSGT00950000183180.a.a	ENSGT00940000161076	ENSGT00940000155976.b.a.a	ENSGT00740000116956	ENSGT00940000159976	ENSGT00530000063735.b	ENSGT00940000158064	ENSGT00940000160326.d	ENSGT00940000165059.B.a	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a.a
Red-bellied piranha	MODERN SPECIES	275									ENSPNAG00000015815	nras (ENSPNAG00000015801)	ampd1 (ENSPNAG00000015780) #33	DENND2C (ENSPNAG00000015752) #32	bcas2 (ENSPNAG00000015736) #19	trim33 (ENSPNAG00000015676) #20	slc66a1 (ENSPNAG00000015540) #21	nr1h5 (ENSPNAG00000015478) #22	BRPF3 (ENSPNAG00000015397) #23	ENSPNAG00000015338 #24	ENSPNAG00000015272 #25	TBC1D22B (ENSPNAG00000015255)	pim1 (ENSPNAG00000015243)	ENSPNAG00000015220
Mexicana tetra	MODERN SPECIES	21	DAB2IP (ENSAMXG00000012477)	phf19 (ENSAMXG00000012448)	traf1 (ENSAMXG00000012427)	FIBCD1 (ENSAMXG00000012417)	ENSAMXG00000031635	SLC2A6 (ENSAMXG00000012392)	ENSAMXG00000012375	plekha2 (ENSAMXG00000012353)	ENSAMXG00000038887	nras (ENSAMXG00000012327)	ampd1 (ENSAMXG00000012319) #33	DENND2C (ENSAMXG00000012309) #32	bcas2 (ENSAMXG00000012276) #19	trim33 (ENSAMXG00000012262) #20	slc66a1 (ENSAMXG00000036105) #21	nr1h5 (ENSAMXG00000012228) #22	BRPF3 (ENSAMXG00000012209) #23	ENSAMXG00000032708 #24	ENSAMXG00000038067 #25	TBC1D22B (ENSAMXG00000030380)	pim1 (ENSAMXG00000036419)	ENSAMXG00000033942	kcnd1 (ENSAMXG00000031121)	gripap1 (ENSAMXG00000017631)	MON1B (ENSAMXG00000017621)	ptpn18 (ENSAMXG00000038427)	ENSAMXG00000032686	pdlim2 (ENSAMXG00000032208)	sorbs3 (ENSAMXG00000043577)	naa35 (ENSAMXG00000011259)	agtpbp1 (ENSAMXG00000011291)
Cyprinoidei	ANCESTRAL SPECIES	32							ENSGT00530000063735.b	ENSGT00940000158064	ENSGT00940000160326.d	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000155056.a #23	ENSGT00940000159584 #24	ENSGT00940000160682.a #25	ENSGT00940000157472	ENSGT00940000153394.c.a	ENSGT00940000166296	ENSGT00950000183145.A.b.b	ENSGT00940000155472.a.a	ENSGT00720000108868	ENSGT00390000006665.b.h	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a	ENSGT00940000156776.c	ENSGT00940000155869	ENSGT00390000011863.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	134						ENSGT00940000157654.c	ENSGT00530000063735.b.d	ENSGT00940000158064.j	ENSGT00940000160326.d	ENSGT00940000158947.b	ENSGT00950000183011.c.a.a.h #33	ENSGT00950000182931.B.a.b.c #32	ENSGT00390000014494.bc #19	ENSGT00940000156361.B.b #20	ENSGT00390000003344.a #21	ENSGT00940000166498.e #22	ENSGT00940000155056.a.a #23	ENSGT00940000159584.g #24	ENSGT00940000160682.a.a.a #25	ENSGT00940000160682.a.b #25	ENSGT00940000157472.b	ENSGT00940000153394.c.a.b	ENSGT00940000166296.a	ENSGT00940000155472.a.a.a	ENSGT00720000108868.c	ENSGT00390000006665.b.h	ENSGT00940000164289.a.a	ENSGT01050000244850.A.a.o.a.c	ENSGT00940000156776.c	ENSGT00940000155869.c	ENSGT00390000011863.c.o.a
Goldfish	MODERN SPECIES	48	ENSCARG00000009883	ENSCARG00000009888	fxn (ENSCARG00000009895)	pip5k1bb (ENSCARG00000009903)	ENSCARG00000009958	unc45b (ENSCARG00000009965)	ENSCARG00000009988	plekha2 (ENSCARG00000010052)	ASB13 (ENSCARG00000010058)	nras (ENSCARG00000010067)	ampd1 (ENSCARG00000010146) #33	DENND2C (ENSCARG00000012559) #32	bcas2 (ENSCARG00000012570) #19	trim33 (ENSCARG00000012635) #20	slc66a1 (ENSCARG00000014370) #21	nr1h5 (ENSCARG00000014410) #22	BRPF3 (ENSCARG00000006032) #23	MAPK13 (ENSCARG00000006095) #24	ENSCARG00000006235 #25	TBC1D22B (ENSCARG00000006284)	pim1 (ENSCARG00000006574)	ENSCARG00000006622	ENSCARG00000006645	ENSCARG00000006650	kcnd1 (ENSCARG00000006660)	gripap1 (ENSCARG00000006684)	MON1B (ENSCARG00000006753)	ptpn18 (ENSCARG00000006767)	plxna3 (ENSCARG00000006861)	ENSCARG00000007441	slc6a8 (ENSCARG00000007521)
Cyprininae_a	ANCESTRAL SPECIES	258			ENSGT00940000158634.a.a	ENSGT00390000005811.ab	ENSGT00940000156639.c.a	ENSGT00940000157654.c	ENSGT00530000063735.b.d	ENSGT00940000158064.j	ENSGT00940000165059.B.a	ENSGT00940000158947.b	ENSGT00950000183011.c.a.a.h #33	ENSGT00950000182931.B.a.b.c #32	ENSGT00390000014494.bc #19	ENSGT00940000156361.B.b #20	ENSGT00390000003344.a #21	ENSGT00940000166498.e #22	ENSGT00940000155056.a.a #23	ENSGT00940000159584.g #24	ENSGT00940000160682.a.a.a #25	ENSGT00940000160682.a.b #25	ENSGT00940000157472.b	ENSGT00940000153394.c.a.b	ENSGT00940000166296.a	ENSGT00940000155472.a.a.a	ENSGT00720000108868.c	ENSGT00390000006665.b.h	ENSGT00940000164289.a.a	ENSGT01050000244850.A.a.o.a.c	ENSGT00940000156776.c	ENSGT00940000155869.c	ENSGT00390000011863.c.o.a
Common carp reference	MODERN SPECIES	23	anapc7 (ENSCCRG00000047366)	atp2a2a (ENSCCRG00000047376)	ift81 (ENSCCRG00000025834)	fnbp1a (ENSCCRG00000025912)	tjp2b (ENSCCRG00000017522)	fxn (ENSCCRG00000027661)	pip5k1bb (ENSCCRG00000050000)	unc45b (ENSCCRG00000049038)	ENSCCRG00000063487	ENSCCRG00000048983	ampd1 (ENSCCRG00000047768) #33	DENND2C (ENSCCRG00000047745) #32	bcas2 (ENSCCRG00000002803) #19	trim33 (ENSCCRG00000039631) #20	slc66a1 (ENSCCRG00000039619) #21	nr1h5 (ENSCCRG00000033773) #22	ENSCCRG00000080148 #23	ENSCCRG00000033781 #24	ENSCCRG00000033784 #25	ENSCCRG00000014422	ENSCCRG00000061039	pim1 (ENSCCRG00000065822)	ENSCCRG00000077067	kcnd1 (ENSCCRG00000082259)	gripap1 (ENSCCRG00000054385)	ENSCCRG00000079483	ptpn18 (ENSCCRG00000059436)	plxna3 (ENSCCRG00000051129)	ENSCCRG00000051042	slc6a8 (ENSCCRG00000035629)	bcap31 (ENSCCRG00000035634)
Golden-line barbel	MODERN SPECIES	258	ift81 (ENSSGRG00000025431)	fnbp1a (ENSSGRG00000025396)	tjp2b (ENSSGRG00000025325)	fxn (ENSSGRG00000025323)	pip5k1bb (ENSSGRG00000025322)	unc45b (ENSSGRG00000025321)	ENSSGRG00000025311	plekha2 (ENSSGRG00000025304)	ENSSGRG00000025302	nras (ENSSGRG00000025220)	ampd1 (ENSSGRG00000024995) #33	DENND2C (ENSSGRG00000024986) #32	bcas2 (ENSSGRG00000024983) #19	trim33 (ENSSGRG00000024119) #20	slc66a1 (ENSSGRG00000024111) #21	nr1h5 (ENSSGRG00000024110) #22	BRPF3 (ENSSGRG00000024044) #23	MAPK13 (ENSSGRG00000023927) #24	ENSSGRG00000023925 #25	TBC1D22B (ENSSGRG00000023847)	pim1 (ENSSGRG00000023841)
Cyprininae	ANCESTRAL SPECIES	111	ENSGT00940000156639.c.a	ENSGT00950000183047.d.f.h	ENSGT00940000154745.a	ENSGT00940000158634.a.b	ENSGT00390000005811.`b	ENSGT00940000156639.c.b	ENSGT00940000157654.d	ENSGT00530000063735.b.c	ENSGT00940000158064.i	ENSGT00940000158947.a	ENSGT00950000183011.c.a.a.g #33	ENSGT00950000182931.B.a.b.d #32	ENSGT00390000014494.ac #19	ENSGT00940000156361.B.a #20	ENSGT00390000003344.b #21	ENSGT00940000166498.f #22	ENSGT00940000155056.a.b #23	ENSGT00940000159584.h #24	ENSGT00940000160682.a.a.b #25	ENSGT00940000157472.a	ENSGT00940000153394.c.a.a	ENSGT00940000166296.b	ENSGT00950000183145.A.b.b.b	ENSGT00940000155472.a.a.b	ENSGT00720000108868.d	ENSGT00940000164289.a.b	ENSGT01050000244850.A.a.o.a.d	ENSGT00940000155869.d	ENSGT00390000011863.c.p	ENSGT00950000182827.B.d	ENSGT00940000163427.c.ab.a
Cyprininae_a	ANCESTRAL SPECIES	111	ENSGT00950000183047.d.f.g	ENSGT00950000183047.d.f.h	ENSGT00940000154745.a	ENSGT00940000158634.a.b	ENSGT00390000005811.`b	ENSGT00940000156639.c.b	ENSGT00940000157654.d	ENSGT00530000063735.b.c	ENSGT00940000158064.i	ENSGT00940000160326.d	ENSGT00940000158947.a	ENSGT00950000183011.c.a.a.g #33	ENSGT00950000182931.B.a.b.d #32	ENSGT00390000014494.ac #19	ENSGT00940000156361.B.a #20	ENSGT00940000166498.f #22	ENSGT00940000155056.a.b #23	ENSGT00940000159584.h #24	ENSGT00940000160682.a.a.b #25	ENSGT00940000157472.a	ENSGT00940000153394.c.a.a	ENSGT00940000166296.b	ENSGT00950000183145.A.b.b.b	ENSGT00940000155472.a.a.b	ENSGT00720000108868.d	ENSGT00940000164289.a.b	ENSGT01050000244850.A.a.o.a.d	ENSGT00940000155869.d	ENSGT00390000011863.c.p	ENSGT00950000182827.B.d	ENSGT00940000158963.b.b.a
Common carp reference	MODERN SPECIES	17	anapc7 (ENSCCRG00000026623)	fnbp1a (ENSCCRG00000026770)	atp2a2a (ENSCCRG00000056384)	si:ch211-248e11.2 (ENSCCRG00000074812)	tjp2b (ENSCCRG00000031373)	fxn (ENSCCRG00000053463)	pip5k1bb (ENSCCRG00000027636)	unc45b (ENSCCRG00000023097)	ENSCCRG00000067607	plekha2 (ENSCCRG00000020058)	ENSCCRG00000020061	ampd1 (ENSCCRG00000039722) #33	DENND2C (ENSCCRG00000039666) #32	bcas2 (ENSCCRG00000064476) #19	trim33 (ENSCCRG00000029494) #20	nr1h5 (ENSCCRG00000039614) #22	ENSCCRG00000039605 #23	ENSCCRG00000075014 #24	ENSCCRG00000076474 #25	ENSCCRG00000079299	pim1 (ENSCCRG00000075335)	ENSCCRG00000064380	ENSCCRG00000014243	kcnd1 (ENSCCRG00000053667)	gripap1 (ENSCCRG00000005400)	ptpn18 (ENSCCRG00000005561)	plxna3 (ENSCCRG00000066638)	ENSCCRG00000033025	slc6a8 (ENSCCRG00000033069)	slc35a2 (ENSCCRG00000081173)	otud5a (ENSCCRG00000077446)
Golden-line barbel	MODERN SPECIES	1522												bcas2 (ENSSGRG00000020782) #19	trim33 (ENSSGRG00000020794) #20	ENSSGRG00000021216	ENSSGRG00000021217	nr1h5 (ENSSGRG00000021218) #22	BRPF3 (ENSSGRG00000021219) #23	MAPK13 (ENSSGRG00000021220) #24
Goldfish	MODERN SPECIES	1857												DENND2C (ENSCARG00000040328) #32	bcas2 (ENSCARG00000040369) #19	trim33 (ENSCARG00000040523) #20	slc66a1 (ENSCARG00000042943) #21	nr1h5 (ENSCARG00000042964) #22	BRPF3 (ENSCARG00000043076) #23	ENSCARG00000044137 #24	ENSCARG00000044217 #25	TBC1D22B (ENSCARG00000044309)	pim1 (ENSCARG00000046776)	ENSCARG00000046788	ENSCARG00000046795	kcnd1 (ENSCARG00000046801)	gripap1 (ENSCARG00000046818)	ptpn18 (ENSCARG00000046896)	plxna3 (ENSCARG00000046997)	ENSCARG00000047350	slc6a8 (ENSCARG00000047363)	bcap31 (ENSCARG00000047662)	slc35a2 (ENSCARG00000047678)
Zebrafish	MODERN SPECIES	23	si:ch211-248e11.2 (ENSDARG00000058940)	tjp2b (ENSDARG00000023443)	fxn (ENSDARG00000074356)	pip5k1bb (ENSDARG00000006508)	unc45b (ENSDARG00000008433)	ENSDARG00000074168	plekha2 (ENSDARG00000078221)	ASB13 (ENSDARG00000089833)	nras (ENSDARG00000038225)	ampd1 (ENSDARG00000033832) #33	DENND2C (ENSDARG00000073738) #32	bcas2 (ENSDARG00000043631) #19	trim33 (ENSDARG00000016181) #20	slc66a1 (ENSDARG00000043624) #21	ENSDARG00000117077	nr1h5 (ENSDARG00000031046) #22	BRPF3 (ENSDARG00000074238) #23	ENSDARG00000058470 #24	ENSDARG00000068100 #25	TBC1D22B (ENSDARG00000026988)	pim1 (ENSDARG00000100020)	ENSDARG00000058944	ENSDARG00000069542	kcnd1 (ENSDARG00000074746)	gripap1 (ENSDARG00000063069)	MON1B (ENSDARG00000035686)	ptpn18 (ENSDARG00000006308)	plxna3 (ENSDARG00000007172)	ENSDARG00000043648	slc6a8 (ENSDARG00000043646)	bcap31 (ENSDARG00000044972)
Osteoglossiformes	ANCESTRAL SPECIES	167	ENSGT00400000023987.c.a.a ##17	ENSGT00390000010165.c	ENSGT00390000016392 #18	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT01010000222287.A	ENSGT00390000018003.a #36	ENSGT00390000016950 #35	ENSGT00950000182839.B.a.b #34	ENSGT00940000158947	ENSGT00950000183011.c.a.a #33	ENSGT00950000182931.B.a.b #32	ENSGT00390000014494 #19	ENSGT00940000156361.B #20	ENSGT00390000003344 #21	ENSGT00940000166498 #22	ENSGT00940000159584 #24	ENSGT00940000155056 #23
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015025425	HTR6 (ENSSFOG00015007355)	ENSSFOG00015012405	ENSSFOG00015007378	capzb (ENSSFOG00015007401)	taf13 (ENSSFOG00015007460)	SIKE1 (ENSSFOG00015024912) #36	csde1 (ENSSFOG00015007498) #35	ENSSFOG00015007564 #34	nras (ENSSFOG00015032247)	ampd1 (ENSSFOG00015007635) #33	DENND2C (ENSSFOG00015007663) #32	bcas2 (ENSSFOG00015028109) #19	trim33 (ENSSFOG00015007725) #20	slc66a1 (ENSSFOG00015007821) #21	nr1h5 (ENSSFOG00015007836) #22	MAPK13 (ENSSFOG00015007849) #24	BRPF3 (ENSSFOG00015007897) #23	KDM5B (ENSSFOG00015007981)	tuba5 (ENSSFOG00015008228)	KLHL12 (ENSSFOG00015008243)	adipor1b (ENSSFOG00015008277)	LMOD1 (ENSSFOG00015030917)	ENSSFOG00015030303	INKA2 (ENSSFOG00015008343)	ddx20 (ENSSFOG00015008354)	kcnd3 (ENSSFOG00015008373)	CTTNBP2NL (ENSSFOG00015030821)	ENSSFOG00015031536	ENSSFOG00015008443	st7l (ENSSFOG00015008506)
P. kingsleyae	MODERN SPECIES	263	ZNF385A (ENSPKIG00000009611)	otud3 (ENSPKIG00000009590) #18	vwa1 (ENSPKIG00000009575)	TMCO4 (ENSPKIG00000009539)	ENSPKIG00000009517	ENSPKIG00000009507	SIKE1 (ENSPKIG00000009488) #36	csde1 (ENSPKIG00000009459) #35	ENSPKIG00000009443 #34	nras (ENSPKIG00000009416)	ampd1 (ENSPKIG00000009358) #33	DENND2C (ENSPKIG00000009318) #32	bcas2 (ENSPKIG00000009296) #19	trim33 (ENSPKIG00000009222) #20	slc66a1 (ENSPKIG00000009165) #21	nr1h5 (ENSPKIG00000009094) #22	ENSPKIG00000009004 #24	BRPF3 (ENSPKIG00000008910) #23	zgc:153867 (ENSPKIG00000008811)	C1QL4 (ENSPKIG00000008767)	asb8 (ENSPKIG00000008744)	ENSPKIG00000008729	ENSPKIG00000008717