Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000157296	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00940000164189	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000166513 #23	ENSGT01030000235289	ENSGT00940000162543	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000157296	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00940000164189	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000162543	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A	ENSGT00940000153110.C	ENSGT00940000155159.C
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00730000111191	ENSGT00940000157296	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000162543	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A	ENSGT00940000153110.C	ENSGT00940000155159.C
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00730000111191	ENSGT00940000157296	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000162543	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A	ENSGT00940000153110.C	ENSGT00940000155159.C
Degu	MODERN SPECIES	260					MAP2K4 (ENSODEG00000001399) #11	ZNF18 (ENSODEG00000001293) #12	DNAH9 (ENSODEG00000001351) #13	SHISA6 (ENSODEG00000001077) #14	PIRT (ENSODEG00000018651) #15	TMEM220 (ENSODEG00000001002) #16	ENSODEG00000000689 #17	MYH3 (ENSODEG00000000673) #18	ENSODEG00000000598 #19	MYH1 (ENSODEG00000001315) #20	ENSODEG00000001080 #21	MYH8 (ENSODEG00000000933) #22	ENSODEG00000000885 #23	GAS7 (ENSODEG00000001461) #24	RCVRN (ENSODEG00000001411) #25	GLP2R (ENSODEG00000001354) #26	GSG1L2 (ENSODEG00000001321) #27	DHRS7C (ENSODEG00000001301) #28	USP43 (ENSODEG00000001266) #29	CFAP52 (ENSODEG00000000907) #30	STX8 (ENSODEG00000000836) #31
Long-tailed chinchilla	MODERN SPECIES	174	ELAC2 (ENSCLAG00000007156)	ARHGAP44 (ENSCLAG00000010698)	MYOCD (ENSCLAG00000009669)	MAP2K4 (ENSCLAG00000011081) #11	ZNF18 (ENSCLAG00000008591) #12	DNAH9 (ENSCLAG00000009851) #13	SHISA6 (ENSCLAG00000013067) #14	PIRT (ENSCLAG00000013878) #15	TMEM220 (ENSCLAG00000016360) #16	ADPRM (ENSCLAG00000009725) #17	SCO1 (ENSCLAG00000010568)	MYH3 (ENSCLAG00000012142) #18	ENSCLAG00000013582 #19	MYH1 (ENSCLAG00000016190) #20	ENSCLAG00000010433 #21	MYH8 (ENSCLAG00000013990) #22	MYH13 (ENSCLAG00000007994)	GAS7 (ENSCLAG00000010871) #24	RCVRN (ENSCLAG00000015516) #25	GLP2R (ENSCLAG00000015440) #26	GSG1L2 (ENSCLAG00000008616) #27	DHRS7C (ENSCLAG00000008924) #28	USP43 (ENSCLAG00000012194) #29	CFAP52 (ENSCLAG00000014416) #30	STX8 (ENSCLAG00000010150) #31	NTN1 (ENSCLAG00000009428)	PIK3R5 (ENSCLAG00000008429)	PIK3R6 (ENSCLAG00000010010)	MFSD6L (ENSCLAG00000018071)	CCDC42 (ENSCLAG00000010893)	MYH10 (ENSCLAG00000007252)
Guinea pig	MODERN SPECIES	61	RNF222 (ENSCPOG00000004821)	RPL26 (ENSCPOG00000031851)	ENSCPOG00000027195	ARHGEF15 (ENSCPOG00000010445)	SLC25A35 (ENSCPOG00000033077)	RANGRF (ENSCPOG00000025429)	PFAS (ENSCPOG00000003296)	CTC1 (ENSCPOG00000003291)	AURKB (ENSCPOG00000003286)	ENSCPOG00000030467 #17	ENSCPOG00000007008	MYH3 (ENSCPOG00000032052) #18	ENSCPOG00000004226 #19	MYH1 (ENSCPOG00000040235) #20	ENSCPOG00000031719 #21	MYH8 (ENSCPOG00000039186) #22	MYH13 (ENSCPOG00000036992)	GAS7 (ENSCPOG00000002804) #24	RCVRN (ENSCPOG00000031816) #25	GLP2R (ENSCPOG00000002800) #26	DHRS7C (ENSCPOG00000034427) #28	USP43 (ENSCPOG00000034382) #29	ENSCPOG00000030269 #30	ENSCPOG00000035012	ENSCPOG00000025157	ENSCPOG00000030247 #17	TMEM220 (ENSCPOG00000030155) #16	PIRT (ENSCPOG00000034574) #15	ENSCPOG00000009604 #14	DNAH9 (ENSCPOG00000012770) #13	ZNF18 (ENSCPOG00000035229) #12
Naked mole-rat female	MODERN SPECIES	12						ENSHGLG00000032321	PIRT (ENSHGLG00000046682) #15	TMEM238L (ENSHGLG00000034503)	TMEM220 (ENSHGLG00000037715) #16	ADPRM (ENSHGLG00000011962) #17	SCO1 (ENSHGLG00000050573)	MYH3 (ENSHGLG00000010160) #18	MYH1 (ENSHGLG00000010506) #20	ENSHGLG00000048975	ENSHGLG00000048471	MYH8 (ENSHGLG00000010857) #22	ENSHGLG00000033132 #23	ENSHGLG00000048000 #23	ENSHGLG00000012097	GAS7 (ENSHGLG00000012942) #24	RCVRN (ENSHGLG00000011604) #25	GLP2R (ENSHGLG00000009949) #26	DHRS7C (ENSHGLG00000016082) #28	CFAP52 (ENSHGLG00000010371) #30	STX8 (ENSHGLG00000019045) #31	NTN1 (ENSHGLG00000011747)	ENSHGLG00000046050	PIK3R6 (ENSHGLG00000015017)	ENSHGLG00000050496	CCDC42 (ENSHGLG00000017260)	MYH10 (ENSHGLG00000010955)
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00940000157296	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00940000164189	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT01030000235289	ENSGT00940000162543	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A	ENSGT00940000153110.C
Marmotini	ANCESTRAL SPECIES	42	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00950000182895.a.a.a.b.f	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00940000164189	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT01030000235289	ENSGT00940000162543	ENSGT00940000156268.a.a.i #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A	ENSGT00940000153110.C
Marmotini_b	ANCESTRAL SPECIES	35	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744 #11	ENSGT00950000182895.a.a.a.b.f	ENSGT00940000161617 #12	ENSGT00940000159717 #13	ENSGT00940000156854 #14	ENSGT00940000154322.C #15	ENSGT00940000164189	ENSGT00390000009386 #16	ENSGT00390000014667 #17	ENSGT00390000004323.b	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT01030000235289	ENSGT00940000162543	ENSGT00940000156268.a.a.i #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b	ENSGT00530000063753.B	ENSGT00530000063753.A	ENSGT00530000063599.A	ENSGT00940000153110.C
Arctic ground squirrel	MODERN SPECIES	77	MYOCD (ENSUPAG00010017746)	MAP2K4 (ENSUPAG00010017714) #11	ENSUPAG00010017710	ZNF18 (ENSUPAG00010017682) #12	DNAH9 (ENSUPAG00010017605) #13	SHISA6 (ENSUPAG00010017596) #14	PIRT (ENSUPAG00010017589) #15	TMEM238L (ENSUPAG00010017586)	TMEM220 (ENSUPAG00010017577) #16	ADPRM (ENSUPAG00010017566) #17	SCO1 (ENSUPAG00010017558)	MYH3 (ENSUPAG00010017537) #18	ENSUPAG00010017464 #19	MYH1 (ENSUPAG00010017334) #20	ENSUPAG00010017274 #21	MYH8 (ENSUPAG00010017234) #22	ENSUPAG00010017227	MYH13 (ENSUPAG00010017113)	ENSUPAG00010017073 #24	RCVRN (ENSUPAG00010017070) #25	GLP2R (ENSUPAG00010017049) #26	GSG1L2 (ENSUPAG00010017041) #27	DHRS7C (ENSUPAG00010017035) #28	USP43 (ENSUPAG00010016995) #29	CFAP52 (ENSUPAG00010016957) #30	STX8 (ENSUPAG00010016949) #31	NTN1 (ENSUPAG00010016939)	PIK3R5 (ENSUPAG00010016917)	PIK3R6 (ENSUPAG00010016865)	MFSD6L (ENSUPAG00010016862)	CCDC42 (ENSUPAG00010016826)
Squirrel	MODERN SPECIES	195	ARHGAP44 (ENSSTOG00000006643)	MYOCD (ENSSTOG00000011741)	MAP2K4 (ENSSTOG00000022796) #11	ZNF18 (ENSSTOG00000012652) #12	DNAH9 (ENSSTOG00000012619) #13	SHISA6 (ENSSTOG00000024068) #14	PIRT (ENSSTOG00000006779) #15	TMEM238L (ENSSTOG00000032395)	TMEM220 (ENSSTOG00000032743) #16	ADPRM (ENSSTOG00000008969) #17	SCO1 (ENSSTOG00000008952)	MYH3 (ENSSTOG00000008901) #18	ENSSTOG00000008696 #19	MYH1 (ENSSTOG00000008642) #20	ENSSTOG00000008755 #21	MYH8 (ENSSTOG00000008604) #22	MYH13 (ENSSTOG00000008550)	GAS7 (ENSSTOG00000022185) #24	RCVRN (ENSSTOG00000010737) #25	GLP2R (ENSSTOG00000010730) #26	GSG1L2 (ENSSTOG00000031513) #27	DHRS7C (ENSSTOG00000000131) #28	USP43 (ENSSTOG00000000127) #29	CFAP52 (ENSSTOG00000000124) #30	STX8 (ENSSTOG00000000733) #31	NTN1 (ENSSTOG00000000729)	PIK3R5 (ENSSTOG00000005231)	PIK3R6 (ENSSTOG00000005195)	MFSD6L (ENSSTOG00000028270)	CCDC42 (ENSSTOG00000005168)	MYH10 (ENSSTOG00000010770)
Alpin marmot	MODERN SPECIES	92	MYOCD (ENSMMMG00000021238)	MAP2K4 (ENSMMMG00000021233) #11	ENSMMMG00000021228	ZNF18 (ENSMMMG00000021202) #12	DNAH9 (ENSMMMG00000021155) #13	SHISA6 (ENSMMMG00000021148) #14	PIRT (ENSMMMG00000021135) #15	TMEM238L (ENSMMMG00000021132)	TMEM220 (ENSMMMG00000021107) #16	ADPRM (ENSMMMG00000021104) #17	SCO1 (ENSMMMG00000021099)	MYH3 (ENSMMMG00000021036) #18	ENSMMMG00000020953 #19	MYH1 (ENSMMMG00000020859) #20	ENSMMMG00000020796 #21	MYH8 (ENSMMMG00000020759) #22	MYH13 (ENSMMMG00000020714)	ENSMMMG00000020649 #24	RCVRN (ENSMMMG00000020644) #25	GLP2R (ENSMMMG00000020629) #26	GSG1L2 (ENSMMMG00000020620) #27	DHRS7C (ENSMMMG00000020617) #28	USP43 (ENSMMMG00000020578) #29	CFAP52 (ENSMMMG00000020562) #30	STX8 (ENSMMMG00000020554) #31	PIK3R5 (ENSMMMG00000020529)	PIK3R6 (ENSMMMG00000020491)	ENSMMMG00000020485	ENSMMMG00000020480	MYH10 (ENSMMMG00000020421)	ENSMMMG00000020408
Eurasian red squirrel	MODERN SPECIES	12	ARHGAP44 (ENSSVLG00005005563)	MYOCD (ENSSVLG00005005703)	MAP2K4 (ENSSVLG00005005865) #11	ZNF18 (ENSSVLG00005005943) #12	DNAH9 (ENSSVLG00005006097) #13	SHISA6 (ENSSVLG00005006884) #14	PIRT (ENSSVLG00005006964) #15	TMEM238L (ENSSVLG00005006982)	TMEM220 (ENSSVLG00005007037) #16	ADPRM (ENSSVLG00005007117) #17	ENSSVLG00005007156	MYH3 (ENSSVLG00005007189) #18	MYH2 (ENSSVLG00005007391)	MYH1 (ENSSVLG00005007619) #20	MYH4 (ENSSVLG00005007863)	MYH8 (ENSSVLG00005008068) #22	MYH13 (ENSSVLG00005008310)	ENSSVLG00005008619 #24	RCVRN (ENSSVLG00005008926) #25	GLP2R (ENSSVLG00005008969) #26	ENSSVLG00005009118	GSG1L2 (ENSSVLG00005009145) #27	DHRS7C (ENSSVLG00005009188) #28	USP43 (ENSSVLG00005009264) #29	ENSSVLG00005009424	CFAP52 (ENSSVLG00005009500) #30	STX8 (ENSSVLG00005009683) #31	NTN1 (ENSSVLG00005009752)	ENSSVLG00005009777	PIK3R5 (ENSSVLG00005009832)	ENSSVLG00005010121