Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000157296 #7	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00940000164189 #14	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000166513	ENSGT01030000235289	ENSGT00940000162543 #23	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00940000157296 #7	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00940000164189 #14	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT01030000235289	ENSGT00940000162543 #23	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35	ENSGT00940000153110.C #36
Marmotini	ANCESTRAL SPECIES	42	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00950000182895.a.a.a.b.f	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00940000164189 #14	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT01030000235289	ENSGT00940000162543 #23	ENSGT00940000156268.a.a.i #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35	ENSGT00940000153110.C #36
Marmotini_b	ANCESTRAL SPECIES	35	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00950000182895.a.a.a.b.f	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00940000164189 #14	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT01030000235289	ENSGT00940000162543 #23	ENSGT00940000156268.a.a.i #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35	ENSGT00940000153110.C #36
Squirrel	MODERN SPECIES	195	ARHGAP44 (ENSSTOG00000006643) #7	MYOCD (ENSSTOG00000011741) #8	MAP2K4 (ENSSTOG00000022796) #9	ZNF18 (ENSSTOG00000012652) #10	DNAH9 (ENSSTOG00000012619) #11	SHISA6 (ENSSTOG00000024068) #12	PIRT (ENSSTOG00000006779) #13	TMEM238L (ENSSTOG00000032395) #14	TMEM220 (ENSSTOG00000032743) #15	ADPRM (ENSSTOG00000008969) #16	SCO1 (ENSSTOG00000008952) #17	MYH3 (ENSSTOG00000008901) #18	ENSSTOG00000008696 #19	MYH1 (ENSSTOG00000008642) #20	ENSSTOG00000008755 #21	MYH8 (ENSSTOG00000008604) #22	MYH13 (ENSSTOG00000008550) #23	GAS7 (ENSSTOG00000022185) #24	RCVRN (ENSSTOG00000010737) #25	GLP2R (ENSSTOG00000010730) #26	GSG1L2 (ENSSTOG00000031513) #27	DHRS7C (ENSSTOG00000000131) #28	USP43 (ENSSTOG00000000127) #29	CFAP52 (ENSSTOG00000000124) #30	STX8 (ENSSTOG00000000733) #31	NTN1 (ENSSTOG00000000729) #32	PIK3R5 (ENSSTOG00000005231) #33	PIK3R6 (ENSSTOG00000005195) #34	MFSD6L (ENSSTOG00000028270) #35	CCDC42 (ENSSTOG00000005168) #36	MYH10 (ENSSTOG00000010770) #37
Arctic ground squirrel	MODERN SPECIES	77	MYOCD (ENSUPAG00010017746) #8	MAP2K4 (ENSUPAG00010017714) #9	ENSUPAG00010017710	ZNF18 (ENSUPAG00010017682) #10	DNAH9 (ENSUPAG00010017605) #11	SHISA6 (ENSUPAG00010017596) #12	PIRT (ENSUPAG00010017589) #13	TMEM238L (ENSUPAG00010017586) #14	TMEM220 (ENSUPAG00010017577) #15	ADPRM (ENSUPAG00010017566) #16	SCO1 (ENSUPAG00010017558) #17	MYH3 (ENSUPAG00010017537) #18	ENSUPAG00010017464 #19	MYH1 (ENSUPAG00010017334) #20	ENSUPAG00010017274 #21	MYH8 (ENSUPAG00010017234) #22	ENSUPAG00010017227	MYH13 (ENSUPAG00010017113) #23	ENSUPAG00010017073 #24	RCVRN (ENSUPAG00010017070) #25	GLP2R (ENSUPAG00010017049) #26	GSG1L2 (ENSUPAG00010017041) #27	DHRS7C (ENSUPAG00010017035) #28	USP43 (ENSUPAG00010016995) #29	CFAP52 (ENSUPAG00010016957) #30	STX8 (ENSUPAG00010016949) #31	NTN1 (ENSUPAG00010016939) #32	PIK3R5 (ENSUPAG00010016917) #33	PIK3R6 (ENSUPAG00010016865) #34	MFSD6L (ENSUPAG00010016862) #35	CCDC42 (ENSUPAG00010016826) #36
Alpin marmot	MODERN SPECIES	92	MYOCD (ENSMMMG00000021238) #8	MAP2K4 (ENSMMMG00000021233) #9	ENSMMMG00000021228	ZNF18 (ENSMMMG00000021202) #10	DNAH9 (ENSMMMG00000021155) #11	SHISA6 (ENSMMMG00000021148) #12	PIRT (ENSMMMG00000021135) #13	TMEM238L (ENSMMMG00000021132) #14	TMEM220 (ENSMMMG00000021107) #15	ADPRM (ENSMMMG00000021104) #16	SCO1 (ENSMMMG00000021099) #17	MYH3 (ENSMMMG00000021036) #18	ENSMMMG00000020953 #19	MYH1 (ENSMMMG00000020859) #20	ENSMMMG00000020796 #21	MYH8 (ENSMMMG00000020759) #22	MYH13 (ENSMMMG00000020714) #23	ENSMMMG00000020649 #24	RCVRN (ENSMMMG00000020644) #25	GLP2R (ENSMMMG00000020629) #26	GSG1L2 (ENSMMMG00000020620) #27	DHRS7C (ENSMMMG00000020617) #28	USP43 (ENSMMMG00000020578) #29	CFAP52 (ENSMMMG00000020562) #30	STX8 (ENSMMMG00000020554) #31	PIK3R5 (ENSMMMG00000020529) #33	PIK3R6 (ENSMMMG00000020491) #34	ENSMMMG00000020485 #35	ENSMMMG00000020480 #36	MYH10 (ENSMMMG00000020421) #37	ENSMMMG00000020408
Eurasian red squirrel	MODERN SPECIES	12	ARHGAP44 (ENSSVLG00005005563) #7	MYOCD (ENSSVLG00005005703) #8	MAP2K4 (ENSSVLG00005005865) #9	ZNF18 (ENSSVLG00005005943) #10	DNAH9 (ENSSVLG00005006097) #11	SHISA6 (ENSSVLG00005006884) #12	PIRT (ENSSVLG00005006964) #13	TMEM238L (ENSSVLG00005006982) #14	TMEM220 (ENSSVLG00005007037) #15	ADPRM (ENSSVLG00005007117) #16	ENSSVLG00005007156 #17	MYH3 (ENSSVLG00005007189) #18	MYH2 (ENSSVLG00005007391)	MYH1 (ENSSVLG00005007619) #20	MYH4 (ENSSVLG00005007863)	MYH8 (ENSSVLG00005008068) #22	MYH13 (ENSSVLG00005008310) #23	ENSSVLG00005008619 #24	RCVRN (ENSSVLG00005008926) #25	GLP2R (ENSSVLG00005008969) #26	ENSSVLG00005009118	GSG1L2 (ENSSVLG00005009145) #27	DHRS7C (ENSSVLG00005009188) #28	USP43 (ENSSVLG00005009264) #29	ENSSVLG00005009424	CFAP52 (ENSSVLG00005009500) #30	STX8 (ENSSVLG00005009683) #31	NTN1 (ENSSVLG00005009752) #32	ENSSVLG00005009777	PIK3R5 (ENSSVLG00005009832) #33	ENSSVLG00005010121
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000157296 #7	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00940000164189 #14	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000162543 #23	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35	ENSGT00940000153110.C #36	ENSGT00940000155159.C #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00730000111191	ENSGT00940000157296 #7	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000162543 #23	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35	ENSGT00940000153110.C #36	ENSGT00940000155159.C #37
Guinea pig	MODERN SPECIES	61	RNF222 (ENSCPOG00000004821)	RPL26 (ENSCPOG00000031851)	ENSCPOG00000027195	ARHGEF15 (ENSCPOG00000010445)	SLC25A35 (ENSCPOG00000033077)	RANGRF (ENSCPOG00000025429)	PFAS (ENSCPOG00000003296)	CTC1 (ENSCPOG00000003291)	AURKB (ENSCPOG00000003286)	ENSCPOG00000030467 #16	ENSCPOG00000007008 #17	MYH3 (ENSCPOG00000032052) #18	ENSCPOG00000004226 #19	MYH1 (ENSCPOG00000040235) #20	ENSCPOG00000031719 #21	MYH8 (ENSCPOG00000039186) #22	MYH13 (ENSCPOG00000036992) #23	GAS7 (ENSCPOG00000002804) #24	RCVRN (ENSCPOG00000031816) #25	GLP2R (ENSCPOG00000002800) #26	DHRS7C (ENSCPOG00000034427) #28	USP43 (ENSCPOG00000034382) #29	ENSCPOG00000030269 #30	ENSCPOG00000035012	ENSCPOG00000025157 #17	ENSCPOG00000030247 #16	TMEM220 (ENSCPOG00000030155) #15	PIRT (ENSCPOG00000034574) #13	ENSCPOG00000009604 #12	DNAH9 (ENSCPOG00000012770) #11	ZNF18 (ENSCPOG00000035229) #10
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00730000111191	ENSGT00940000157296 #7	ENSGT00950000182979.a.b.b.b.a.c #8	ENSGT00940000154744 #9	ENSGT00940000161617 #10	ENSGT00940000159717 #11	ENSGT00940000156854 #12	ENSGT00940000154322.C #13	ENSGT00390000009386 #15	ENSGT00390000014667 #16	ENSGT00390000004323.b #17	ENSGT00940000161575 #18	ENSGT00940000154760.c.b #19	ENSGT00940000154760.c.a #20	ENSGT00940000163646 #21	ENSGT00940000161785 #22	ENSGT00940000162543 #23	ENSGT00940000156268.a.a #24	ENSGT00940000159441 #25	ENSGT00940000158127 #26	ENSGT01050000244814.a.b #27	ENSGT00940000157100 #28	ENSGT00940000158772 #29	ENSGT00940000157016 #30	ENSGT00390000007779 #31	ENSGT00940000153882.a.b.b.b #32	ENSGT00530000063753.B #33	ENSGT00530000063753.A #34	ENSGT00530000063599.A #35	ENSGT00940000153110.C #36	ENSGT00940000155159.C #37
Long-tailed chinchilla	MODERN SPECIES	174	ELAC2 (ENSCLAG00000007156)	ARHGAP44 (ENSCLAG00000010698) #7	MYOCD (ENSCLAG00000009669) #8	MAP2K4 (ENSCLAG00000011081) #9	ZNF18 (ENSCLAG00000008591) #10	DNAH9 (ENSCLAG00000009851) #11	SHISA6 (ENSCLAG00000013067) #12	PIRT (ENSCLAG00000013878) #13	TMEM220 (ENSCLAG00000016360) #15	ADPRM (ENSCLAG00000009725) #16	SCO1 (ENSCLAG00000010568) #17	MYH3 (ENSCLAG00000012142) #18	ENSCLAG00000013582 #19	MYH1 (ENSCLAG00000016190) #20	ENSCLAG00000010433 #21	MYH8 (ENSCLAG00000013990) #22	MYH13 (ENSCLAG00000007994) #23	GAS7 (ENSCLAG00000010871) #24	RCVRN (ENSCLAG00000015516) #25	GLP2R (ENSCLAG00000015440) #26	GSG1L2 (ENSCLAG00000008616) #27	DHRS7C (ENSCLAG00000008924) #28	USP43 (ENSCLAG00000012194) #29	CFAP52 (ENSCLAG00000014416) #30	STX8 (ENSCLAG00000010150) #31	NTN1 (ENSCLAG00000009428) #32	PIK3R5 (ENSCLAG00000008429) #33	PIK3R6 (ENSCLAG00000010010) #34	MFSD6L (ENSCLAG00000018071) #35	CCDC42 (ENSCLAG00000010893) #36	MYH10 (ENSCLAG00000007252) #37
Degu	MODERN SPECIES	260					MAP2K4 (ENSODEG00000001399) #9	ZNF18 (ENSODEG00000001293) #10	DNAH9 (ENSODEG00000001351) #11	SHISA6 (ENSODEG00000001077) #12	PIRT (ENSODEG00000018651) #13	TMEM220 (ENSODEG00000001002) #15	ENSODEG00000000689 #16	MYH3 (ENSODEG00000000673) #18	ENSODEG00000000598 #19	MYH1 (ENSODEG00000001315) #20	ENSODEG00000001080 #21	MYH8 (ENSODEG00000000933) #22	ENSODEG00000000885	GAS7 (ENSODEG00000001461) #24	RCVRN (ENSODEG00000001411) #25	GLP2R (ENSODEG00000001354) #26	GSG1L2 (ENSODEG00000001321) #27	DHRS7C (ENSODEG00000001301) #28	USP43 (ENSODEG00000001266) #29	CFAP52 (ENSODEG00000000907) #30	STX8 (ENSODEG00000000836) #31
Naked mole-rat female	MODERN SPECIES	12						ENSHGLG00000032321	PIRT (ENSHGLG00000046682) #13	TMEM238L (ENSHGLG00000034503) #14	TMEM220 (ENSHGLG00000037715) #15	ADPRM (ENSHGLG00000011962) #16	SCO1 (ENSHGLG00000050573) #17	MYH3 (ENSHGLG00000010160) #18	MYH1 (ENSHGLG00000010506) #20	ENSHGLG00000048975	ENSHGLG00000048471	MYH8 (ENSHGLG00000010857) #22	ENSHGLG00000033132	ENSHGLG00000048000	ENSHGLG00000012097	GAS7 (ENSHGLG00000012942) #24	RCVRN (ENSHGLG00000011604) #25	GLP2R (ENSHGLG00000009949) #26	DHRS7C (ENSHGLG00000016082) #28	CFAP52 (ENSHGLG00000010371) #30	STX8 (ENSHGLG00000019045) #31	NTN1 (ENSHGLG00000011747) #32	ENSHGLG00000046050 #33	PIK3R6 (ENSHGLG00000015017) #34	ENSHGLG00000050496 #35	CCDC42 (ENSHGLG00000017260) #36	MYH10 (ENSHGLG00000010955) #37