Amniota	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Sauria	DUPLICATION
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Archosauria	ANCESTRAL SPECIES	3	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Aves	ANCESTRAL SPECIES	12	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Neognathae	ANCESTRAL SPECIES	2	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000155517 #19	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Chicken	MODERN SPECIES	22	TBXT (ENSGALG00010005911) #7	PRR18 (ENSGALG00010005903) #8	SFT2D1 (ENSGALG00010005893) #9	MPC1L (ENSGALG00010005861) #10	RPS6KA2 (ENSGALG00010005839) #11	RNASET2 (ENSGALG00010005789) #12	FGFR1OP (ENSGALG00010006486) #13	CCR6 (ENSGALG00010006499) #14	ENSGALG00010004876 #15	TTLL2 (ENSGALG00010004846) #16	AFDN (ENSGALG00010004951) #17	KIF25 (ENSGALG00010004927) #18	FRMD1 (ENSGALG00010004907) #19	DACT2 (ENSGALG00010006621) #20	SULT (ENSGALG00010006606) #21	SULT6B1L (ENSGALG00010006570) #22	SMOC2 (ENSGALG00010006546) #23	THBS2 (ENSGALG00010004760) #24	WDR27 (ENSGALG00010004715) #25	C6orf120 (ENSGALG00010004666) #26	PHF10 (ENSGALG00010004624) #27	DYNLT2 (ENSGALG00010004602) #28	ERMARD (ENSGALG00010004542) #29	ENSGALG00010004387 #30	DLL1 (ENSGALG00010007927) #31	FAM120B (ENSGALG00010007921) #32	PSMB1 (ENSGALG00010007878) #33	TBP (ENSGALG00010007866) #34	PDCD2 (ENSGALG00010007856) #35	GNPAT (ENSGALG00010010888) #36	C1orf131 (ENSGALG00010007853) #37
Turkey	MODERN SPECIES	11	ENSMGAG00000022277	TBXT (ENSMGAG00000012328) #7	SFT2D1 (ENSMGAG00000021326) #9	MPC1 (ENSMGAG00000012326) #10	RPS6KA2 (ENSMGAG00000012309) #11	RNASET2 (ENSMGAG00000012305) #12	CEP43 (ENSMGAG00000012298) #13	CCR6 (ENSMGAG00000015842) #14	ENSMGAG00000017645 #15	ENSMGAG00000012817 #16	ENSMGAG00000012812	AFDN (ENSMGAG00000012282) #17	KIF25 (ENSMGAG00000012274) #18	ENSMGAG00000012266 #19	DACT2 (ENSMGAG00000012264) #20	ENSMGAG00000012256 #22	SMOC2 (ENSMGAG00000012250) #23	THBS2 (ENSMGAG00000012225) #24	WDR27 (ENSMGAG00000012219) #25	C6orf120 (ENSMGAG00000015838) #26	PHF10 (ENSMGAG00000012212) #27	DYNLT2 (ENSMGAG00000012210) #28	ERMARD (ENSMGAG00000012202) #29	DLL1 (ENSMGAG00000012198) #31	FAM120B (ENSMGAG00000012195) #32	PSMB1 (ENSMGAG00000012188) #33	TBP (ENSMGAG00000012179) #34	GNPAT (ENSMGAG00000012163) #36	C1orf131 (ENSMGAG00000012161) #37	TRIM67 (ENSMGAG00000012157)	ARV1 (ENSMGAG00000012151)
Japanese quail	MODERN SPECIES	21	ENSCJPG00005004044 #8	SFT2D1 (ENSCJPG00005004038) #9	MPC1 (ENSCJPG00005004032) #10	RPS6KA2 (ENSCJPG00005004020) #11	ENSCJPG00005004017	RNASET2 (ENSCJPG00005004012) #12	CEP43 (ENSCJPG00005004007) #13	CCR6 (ENSCJPG00005004006) #14	ENSCJPG00005004005 #15	TTLL2 (ENSCJPG00005004004) #16	UNC93A (ENSCJPG00005003999)	AFDN (ENSCJPG00005003980) #17	KIF25 (ENSCJPG00005003978) #18	ENSCJPG00005003972 #19	DACT2 (ENSCJPG00005003968) #20	ENSCJPG00005003961 #22	SMOC2 (ENSCJPG00005003957) #23	THBS2 (ENSCJPG00005003938) #24	WDR27 (ENSCJPG00005003936) #25	C6orf120 (ENSCJPG00005003935) #26	PHF10 (ENSCJPG00005003934) #27	DYNLT2 (ENSCJPG00005003922) #28	ERMARD (ENSCJPG00005003920) #29	ENSCJPG00005003916	DLL1 (ENSCJPG00005003913) #31	FAM120B (ENSCJPG00005003912) #32	PSMB1 (ENSCJPG00005003911) #33	TBP (ENSCJPG00005003910) #34	ENSCJPG00005003909	GNPAT (ENSCJPG00005003907) #36	C1orf131 (ENSCJPG00005003906) #37
Anatidae	ANCESTRAL SPECIES		ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Pink-footed goose	MODERN SPECIES	169								ENSABRG00000019293 #15	TTLL2 (ENSABRG00000019295) #16	UNC93A (ENSABRG00000019297)	AFDN (ENSABRG00000019309) #17	KIF25 (ENSABRG00000019340) #18	ENSABRG00000019349 #19	DACT2 (ENSABRG00000019363) #20	ENSABRG00000019365 #21	ENSABRG00000019372 #22	SMOC2 (ENSABRG00000019377) #23	ENSABRG00000019382	THBS2 (ENSABRG00000019385) #24	WDR27 (ENSABRG00000019388) #25	C6orf120 (ENSABRG00000019393) #26	PHF10 (ENSABRG00000019394) #27	DYNLT2 (ENSABRG00000019395) #28	ERMARD (ENSABRG00000019396) #29	DLL1 (ENSABRG00000019402) #31	FAM120B (ENSABRG00000019406) #32
Duck	MODERN SPECIES	21	PDE10A (ENSAPLG00000009479)	TBXT (ENSAPLG00000018385) #7	SFT2D1 (ENSAPLG00000012881) #9	MPC1 (ENSAPLG00000017567) #10	RPS6KA2 (ENSAPLG00000011253) #11	RNASET2 (ENSAPLG00000010821) #12	CEP43 (ENSAPLG00000010607) #13	CCR6 (ENSAPLG00000010486) #14	TTLL2 (ENSAPLG00000001705) #16	UNC93A (ENSAPLG00000002434)	AFDN (ENSAPLG00000002298) #17	KIF25 (ENSAPLG00000016274) #18	ENSAPLG00000016171 #19	DACT2 (ENSAPLG00000016135) #20	ENSAPLG00000015983 #21	ENSAPLG00000015969 #22	ENSAPLG00000010314 #23	ENSAPLG00000016465 #23	THBS2 (ENSAPLG00000009492) #24	WDR27 (ENSAPLG00000022063) #25	C6orf120 (ENSAPLG00000001155) #26	PHF10 (ENSAPLG00000010634) #27	DYNLT2 (ENSAPLG00000026410) #28	ERMARD (ENSAPLG00000010834) #29	DLL1 (ENSAPLG00000011635) #31	FAM120B (ENSAPLG00000012280) #32	PSMB1 (ENSAPLG00000012435) #33	TBP (ENSAPLG00000012687) #34	ENSAPLG00000018224	PDCD2 (ENSAPLG00000021270) #35	GNPAT (ENSAPLG00000013047) #36
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00990000212037	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00990000212037	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Great tit	MODERN SPECIES	22	TBXT (ENSPMJG00000001409) #7	SFT2D1 (ENSPMJG00000001481) #9	MPC1 (ENSPMJG00000001484) #10	RPS6KA2 (ENSPMJG00000001558) #11	ENSPMJG00000001578	RNASET2 (ENSPMJG00000001581) #12	CEP43 (ENSPMJG00000001586) #13	CCR6 (ENSPMJG00000001598) #14	ENSPMJG00000001619 #15	UNC93A (ENSPMJG00000001629)	AFDN (ENSPMJG00000001693) #17	ENSPMJG00000001762	ENSPMJG00000001768 #19	DACT2 (ENSPMJG00000001809) #20	ENSPMJG00000001815 #21	ENSPMJG00000001821 #22	SMOC2 (ENSPMJG00000001856) #23	THBS2 (ENSPMJG00000001897) #24	ENSPMJG00000002069 #25	ENSPMJG00000002127 #25	C6orf120 (ENSPMJG00000002131) #26	PHF10 (ENSPMJG00000002137) #27	DYNLT2 (ENSPMJG00000002151) #28	ERMARD (ENSPMJG00000002159) #29	DLL1 (ENSPMJG00000002216) #31	FAM120B (ENSPMJG00000002245) #32	PSMB1 (ENSPMJG00000002299) #33	TBP (ENSPMJG00000002308) #34	PDCD2 (ENSPMJG00000002322) #35	GNPAT (ENSPMJG00000002331) #36	C1orf131 (ENSPMJG00000002346) #37
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00980000199980	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00980000199980	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000155310.b	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00980000199980	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Common canary	MODERN SPECIES	20	NHSL1 (ENSSCAG00000003161)	CCDC28A (ENSSCAG00000003177)	REPS1 (ENSSCAG00000003182)	ABRACL (ENSSCAG00000003188)	ENSSCAG00000003193	TXLNB (ENSSCAG00000003196)	CITED2 (ENSSCAG00000003199)	CEP43 (ENSSCAG00000003203) #13	CCR6 (ENSSCAG00000003209) #14	UNC93A (ENSSCAG00000003215)	AFDN (ENSSCAG00000003228) #17	KIF25 (ENSSCAG00000003262) #18	ENSSCAG00000003268 #19	DACT2 (ENSSCAG00000003276) #20	ENSSCAG00000003282 #21	ENSSCAG00000003285 #22	SMOC2 (ENSSCAG00000003290) #23	THBS2 (ENSSCAG00000003295) #24	WDR27 (ENSSCAG00000003303) #25	C6orf120 (ENSSCAG00000003309) #26	PHF10 (ENSSCAG00000003311) #27	ERMARD (ENSSCAG00000003316) #29	DLL1 (ENSSCAG00000003330) #31	FAM120B (ENSSCAG00000003344) #32	PSMB1 (ENSSCAG00000003360) #33	TBP (ENSSCAG00000003367) #34	GNPAT (ENSSCAG00000003382) #36	ENSSCAG00000003399	FAM89A (ENSSCAG00000003405)	TTC13 (ENSSCAG00000003423)	ARV1 (ENSSCAG00000003435)
Zebra finch	MODERN SPECIES	23	TBXT (ENSTGUG00000009448) #7	SFT2D1 (ENSTGUG00000009460) #9	MPC1 (ENSTGUG00000009482) #10	RPS6KA2 (ENSTGUG00000009488) #11	RNASET2 (ENSTGUG00000027712) #12	CEP43 (ENSTGUG00000009547) #13	CCR6 (ENSTGUG00000009563) #14	ENSTGUG00000023539 #15	UNC93A (ENSTGUG00000009567)	AFDN (ENSTGUG00000009578) #17	KIF25 (ENSTGUG00000009635) #18	ENSTGUG00000009646 #19	ENSTGUG00000018926	DACT2 (ENSTGUG00000026616) #20	ENSTGUG00000009671 #21	ENSTGUG00000009675 #22	SMOC2 (ENSTGUG00000009682) #23	THBS2 (ENSTGUG00000009705) #24	WDR27 (ENSTGUG00000009732) #25	C6orf120 (ENSTGUG00000026228) #26	PHF10 (ENSTGUG00000009739) #27	DYNLT2 (ENSTGUG00000009751) #28	ERMARD (ENSTGUG00000009754) #29	DLL1 (ENSTGUG00000009780) #31	FAM120B (ENSTGUG00000009796) #32	PSMB1 (ENSTGUG00000027366) #33	TBP (ENSTGUG00000009824) #34	ENSTGUG00000019043	GNPAT (ENSTGUG00000009841) #36	C1orf131 (ENSTGUG00000023787) #37	TRIM67 (ENSTGUG00000009874)
Medium ground finch	MODERN SPECIES	2	TBXT (ENSGFOG00000001906) #7	SFT2D1 (ENSGFOG00000001923) #9	MPC1 (ENSGFOG00000001931) #10	RPS6KA2 (ENSGFOG00000001944) #11	RNASET2 (ENSGFOG00000001966) #12	CEP43 (ENSGFOG00000001972) #13	CCR6 (ENSGFOG00000001979) #14	ENSGFOG00000001983 #15	UNC93A (ENSGFOG00000001997)	AFDN (ENSGFOG00000002033) #17	KIF25 (ENSGFOG00000002173) #18	FRMD1 (ENSGFOG00000002193)	DACT2 (ENSGFOG00000002239) #20	ENSGFOG00000002285 #21	ENSGFOG00000002306 #21	ENSGFOG00000002332 #22
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00990000212037	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000167703	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Kakapo	MODERN SPECIES	2	PRR18 (ENSSHBG00005020555) #8	SFT2D1 (ENSSHBG00005020559) #9	MPC1 (ENSSHBG00005020562) #10	RPS6KA2 (ENSSHBG00005020566) #11	RNASET2 (ENSSHBG00005020575) #12	CEP43 (ENSSHBG00005020582) #13	CCR6 (ENSSHBG00005020586) #14	ENSSHBG00005020591	ENSSHBG00005020595 #15	UNC93A (ENSSHBG00005020596)	AFDN (ENSSHBG00005020703) #17	KIF25 (ENSSHBG00005020817) #18	ENSSHBG00005020830 #19	DACT2 (ENSSHBG00005020841) #20	ENSSHBG00005020844 #21	ENSSHBG00005020849 #22	ENSSHBG00005020852 #23	THBS2 (ENSSHBG00005020861) #24	ENSSHBG00005020868 #25	ENSSHBG00005020878 #25	C6orf120 (ENSSHBG00005020882) #26	PHF10 (ENSSHBG00005020884) #27	DYNLT2 (ENSSHBG00005020889) #28	ERMARD (ENSSHBG00005020915) #29	DLL1 (ENSSHBG00005020945) #31	FAM120B (ENSSHBG00005020954) #32	PSMB1 (ENSSHBG00005020961) #33	TBP (ENSSHBG00005020965) #34	PDCD2 (ENSSHBG00005020971) #35	GNPAT (ENSSHBG00005020976) #36	C1orf131 (ENSSHBG00005020987) #37
African ostrich	MODERN SPECIES	104							ENSSCUG00000000281 #15	TTLL2 (ENSSCUG00000000282) #16	UNC93A (ENSSCUG00000000283)	AFDN (ENSSCUG00000000284) #17	KIF25 (ENSSCUG00000000285) #18	FRMD6 (ENSSCUG00000000286) #19	DACT2 (ENSSCUG00000000287) #20	ENSSCUG00000000288 #21	ENSSCUG00000000289 #21	ENSSCUG00000000290 #22
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	60	SFT2D1 (ENSCPRG00005017544) #9	MPC1 (ENSCPRG00005017538) #10	RPS6KA2 (ENSCPRG00005017518) #11	RNASET2 (ENSCPRG00005017504) #12	CEP43 (ENSCPRG00005017492) #13	CCR6 (ENSCPRG00005017488) #14	ENSCPRG00005017482	GPR31 (ENSCPRG00005017480)	ENSCPRG00005017477 #15	TTLL2 (ENSCPRG00005017471) #16	UNC93A (ENSCPRG00005017469)	AFDN (ENSCPRG00005017449) #17	KIF25 (ENSCPRG00005017436) #18	ENSCPRG00005017434 #19	DACT2 (ENSCPRG00005017431) #20	ENSCPRG00005017422 #22	ENSCPRG00005017416 #21	ENSCPRG00005017412 #21	ENSCPRG00005017411 #22	SMOC2 (ENSCPRG00005017389) #23	ENSCPRG00005017378	THBS2 (ENSCPRG00005017369) #24	WDR27 (ENSCPRG00005017363) #25	C6orf120 (ENSCPRG00005017358) #26	PHF10 (ENSCPRG00005017355) #27	DYNLT2 (ENSCPRG00005017354) #28	ERMARD (ENSCPRG00005017351) #29	DLL1 (ENSCPRG00005017339) #31	FAM120B (ENSCPRG00005017335) #32	PSMB1 (ENSCPRG00005017322) #33	TBP (ENSCPRG00005017317) #34
Australian saltwater crocodile	MODERN SPECIES	60	RNASET2 (ENSCPRG00005017504) #12	CEP43 (ENSCPRG00005017492) #13	CCR6 (ENSCPRG00005017488) #14	ENSCPRG00005017482	GPR31 (ENSCPRG00005017480)	ENSCPRG00005017477 #15	TTLL2 (ENSCPRG00005017471) #16	UNC93A (ENSCPRG00005017469)	AFDN (ENSCPRG00005017449) #17	KIF25 (ENSCPRG00005017436) #18	ENSCPRG00005017434 #19	DACT2 (ENSCPRG00005017431) #20	ENSCPRG00005017422 #22	ENSCPRG00005017416 #21	ENSCPRG00005017412 #21	ENSCPRG00005017411 #22	SMOC2 (ENSCPRG00005017389) #23	ENSCPRG00005017378	THBS2 (ENSCPRG00005017369) #24	WDR27 (ENSCPRG00005017363) #25	C6orf120 (ENSCPRG00005017358) #26	PHF10 (ENSCPRG00005017355) #27	DYNLT2 (ENSCPRG00005017354) #28	ERMARD (ENSCPRG00005017351) #29	DLL1 (ENSCPRG00005017339) #31	FAM120B (ENSCPRG00005017335) #32	PSMB1 (ENSCPRG00005017322) #33	TBP (ENSCPRG00005017317) #34	PDCD2 (ENSCPRG00005017315) #35	GNPAT (ENSCPRG00005017312) #36	C1orf131 (ENSCPRG00005017310) #37
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Chinese turtle	MODERN SPECIES	999															DACT2 (ENSPSIG00000006859) #20	ENSPSIG00000007121 #22	ENSPSIG00000007299 #21	ENSPSIG00000007797	SMOC2 (ENSPSIG00000007816) #23	THBS2 (ENSPSIG00000009538) #24	ENSPSIG00000001896	WDR27 (ENSPSIG00000006729) #25	C6orf120 (ENSPSIG00000001898) #26	PHF10 (ENSPSIG00000007518) #27	ERMARD (ENSPSIG00000008956) #29	DLL1 (ENSPSIG00000009844) #31	FAM120B (ENSPSIG00000010353) #32	PSMB1 (ENSPSIG00000011467) #33	TBP (ENSPSIG00000013104) #34	PDCD2 (ENSPSIG00000013461) #35	GNPAT (ENSPSIG00000013801) #36
Testudinoidea	DUPLICATION
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES		ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000165210.a.b.e.a.a #22
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	12	ENSCPBG00000012574 #14	CEP43 (ENSCPBG00000012567) #13	ENSCPBG00000012565 #14	ENSCPBG00000012563	GPR31 (ENSCPBG00000012561)	ENSCPBG00000012553 #15	TTLL2 (ENSCPBG00000012551) #16	UNC93A (ENSCPBG00000012535)	AFDN (ENSCPBG00000012527) #17	ENSCPBG00000012524	ENSCPBG00000012522 #19	DACT2 (ENSCPBG00000012519) #20	ENSCPBG00000012517 #21	ENSCPBG00000012515	ENSCPBG00000012512 #22	ENSCPBG00000012509 #22	ENSCPBG00000012498 #23	THBS2 (ENSCPBG00000012494) #24	WDR27 (ENSCPBG00000012489) #25	C6orf120 (ENSCPBG00000012488) #26	PHF10 (ENSCPBG00000012484) #27	DYNLT2 (ENSCPBG00000012481) #28	ERMARD (ENSCPBG00000012480) #29	ENSCPBG00000012474	DLL1 (ENSCPBG00000012470) #31	FAM120B (ENSCPBG00000012465) #32	SRPK2 (ENSCPBG00000012462)	KMT2E (ENSCPBG00000012454)	TAF1A (ENSCPBG00000012451)	ENSCPBG00000012448	AIDA (ENSCPBG00000012444)
painted turtle	MODERN SPECIES	2051																ENSCPBG00000004810 #22
Emydidae	ANCESTRAL SPECIES		ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d.b	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
painted turtle	MODERN SPECIES	12	RNASET2 (ENSCPBG00000012576) #12	ENSCPBG00000012574 #14	CEP43 (ENSCPBG00000012567) #13	ENSCPBG00000012565 #14	ENSCPBG00000012563	GPR31 (ENSCPBG00000012561)	ENSCPBG00000012553 #15	TTLL2 (ENSCPBG00000012551) #16	UNC93A (ENSCPBG00000012535)	AFDN (ENSCPBG00000012527) #17	ENSCPBG00000012524	ENSCPBG00000012522 #19	DACT2 (ENSCPBG00000012519) #20	ENSCPBG00000012517 #21	ENSCPBG00000012515	ENSCPBG00000012512 #22	ENSCPBG00000012509 #22	ENSCPBG00000012498 #23	THBS2 (ENSCPBG00000012494) #24	WDR27 (ENSCPBG00000012489) #25	C6orf120 (ENSCPBG00000012488) #26	PHF10 (ENSCPBG00000012484) #27	DYNLT2 (ENSCPBG00000012481) #28	ERMARD (ENSCPBG00000012480) #29	ENSCPBG00000012474	DLL1 (ENSCPBG00000012470) #31	FAM120B (ENSCPBG00000012465) #32	SRPK2 (ENSCPBG00000012462)	KMT2E (ENSCPBG00000012454)	TAF1A (ENSCPBG00000012451)	ENSCPBG00000012448
Three-toed box turtle	MODERN SPECIES	31	RPS6KA2 (ENSTMTG00000021924) #11	RNASET2 (ENSTMTG00000021913) #12	ENSTMTG00000021910 #14	CEP43 (ENSTMTG00000021905) #13	ENSTMTG00000021900 #14	GPR31 (ENSTMTG00000021897)	ENSTMTG00000021889 #15	TTLL2 (ENSTMTG00000021884) #16	UNC93A (ENSTMTG00000021881)	AFDN (ENSTMTG00000021848) #17	KIF25 (ENSTMTG00000021827) #18	FRMD1 (ENSTMTG00000021800)	DACT2 (ENSTMTG00000021787) #20	ENSTMTG00000021781 #22	ENSTMTG00000021772 #21	ENSTMTG00000021767 #22	SMOC2 (ENSTMTG00000021759) #23	THBS2 (ENSTMTG00000021749) #24	WDR27 (ENSTMTG00000021735) #25	C6orf120 (ENSTMTG00000021728) #26	PHF10 (ENSTMTG00000021719) #27	DYNLT2 (ENSTMTG00000021714) #28	ERMARD (ENSTMTG00000021704) #29	ENSTMTG00000021698	DLL1 (ENSTMTG00000021694) #31	FAM120B (ENSTMTG00000021686) #32	PSMB1 (ENSTMTG00000021679) #33	TBP (ENSTMTG00000021675) #34	PDCD2 (ENSTMTG00000021673) #35	GNPAT (ENSTMTG00000021668) #36	C1orf131 (ENSTMTG00000021663) #37
Testudinidae	ANCESTRAL SPECIES	6	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.b #22	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Goode s thornscrub tortoise	MODERN SPECIES	17	RNASET2 (ENSGEVG00005010632) #12	ENSGEVG00005010659 #14	CEP43 (ENSGEVG00005010775) #13	ENSGEVG00005010882 #14	GPR31 (ENSGEVG00005010901)	ENSGEVG00005010956 #15	TTLL2 (ENSGEVG00005011340) #16	UNC93A (ENSGEVG00005011351)	AFDN (ENSGEVG00005011377) #17	KIF25 (ENSGEVG00005011433) #18	FRMD1 (ENSGEVG00005011554)	DACT2 (ENSGEVG00005011972) #20	ENSGEVG00005012040 #22	ENSGEVG00005012187 #21	ENSGEVG00005012264 #22	ENSGEVG00005012338 #22	SMOC2 (ENSGEVG00005012500) #23	THBS2 (ENSGEVG00005013476) #24	WDR27 (ENSGEVG00005013675) #25	C6orf120 (ENSGEVG00005013868) #26	PHF10 (ENSGEVG00005013891) #27	DYNLT2 (ENSGEVG00005013938) #28	ERMARD (ENSGEVG00005014123) #29	ENSGEVG00005014258	DLL1 (ENSGEVG00005014277) #31	FAM120B (ENSGEVG00005014356) #32	ENSGEVG00005014378 #33	TBP (ENSGEVG00005014472) #34	PDCD2 (ENSGEVG00005014496) #35	GNPAT (ENSGEVG00005014525) #36	C1orf131 (ENSGEVG00005014607) #37
Abingdon island giant tortoise	MODERN SPECIES	64	ENSCABG00000012141 #14	CEP43 (ENSCABG00000012139) #13	ENSCABG00000012137 #14	ENSCABG00000012134	GPR31 (ENSCABG00000012131)	ENSCABG00000012102 #15	TTLL2 (ENSCABG00000012101) #16	UNC93A (ENSCABG00000012100)	AFDN (ENSCABG00000010033) #17	KIF25 (ENSCABG00000010000) #18	ENSCABG00000009988 #19	DACT2 (ENSCABG00000009985) #20	ENSCABG00000009982 #22	ENSCABG00000009979 #21	ENSCABG00000009977 #22	ENSCABG00000009973 #22	SMOC2 (ENSCABG00000009931) #23	THBS2 (ENSCABG00000009929) #24
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000165210.a.b.e.b #22
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.b #22	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Abingdon island giant tortoise	MODERN SPECIES	64	RNASET2 (ENSCABG00000012143) #12	ENSCABG00000012141 #14	CEP43 (ENSCABG00000012139) #13	ENSCABG00000012137 #14	ENSCABG00000012134	GPR31 (ENSCABG00000012131)	ENSCABG00000012102 #15	TTLL2 (ENSCABG00000012101) #16	UNC93A (ENSCABG00000012100)	AFDN (ENSCABG00000010033) #17	KIF25 (ENSCABG00000010000) #18	ENSCABG00000009988 #19	DACT2 (ENSCABG00000009985) #20	ENSCABG00000009982 #22	ENSCABG00000009979 #21	ENSCABG00000009977 #22	ENSCABG00000009973 #22	SMOC2 (ENSCABG00000009931) #23	THBS2 (ENSCABG00000009929) #24
Goode s thornscrub tortoise	MODERN SPECIES	17	RPS6KA2 (ENSGEVG00005010253) #11	RNASET2 (ENSGEVG00005010632) #12	ENSGEVG00005010659 #14	CEP43 (ENSGEVG00005010775) #13	ENSGEVG00005010882 #14	GPR31 (ENSGEVG00005010901)	ENSGEVG00005010956 #15	TTLL2 (ENSGEVG00005011340) #16	UNC93A (ENSGEVG00005011351)	AFDN (ENSGEVG00005011377) #17	KIF25 (ENSGEVG00005011433) #18	FRMD1 (ENSGEVG00005011554)	DACT2 (ENSGEVG00005011972) #20	ENSGEVG00005012040 #22	ENSGEVG00005012187 #21	ENSGEVG00005012264 #22	ENSGEVG00005012338 #22	SMOC2 (ENSGEVG00005012500) #23	THBS2 (ENSGEVG00005013476) #24	WDR27 (ENSGEVG00005013675) #25	C6orf120 (ENSGEVG00005013868) #26	PHF10 (ENSGEVG00005013891) #27	DYNLT2 (ENSGEVG00005013938) #28	ERMARD (ENSGEVG00005014123) #29	ENSGEVG00005014258	DLL1 (ENSGEVG00005014277) #31	FAM120B (ENSGEVG00005014356) #32	ENSGEVG00005014378 #33	TBP (ENSGEVG00005014472) #34	PDCD2 (ENSGEVG00005014496) #35	GNPAT (ENSGEVG00005014525) #36
Testudinoidea	ANCESTRAL SPECIES		ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.b #22	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34
Abingdon island giant tortoise	MODERN SPECIES	64	ENSCABG00000012146 ##11	ENSCABG00000012145 #11	RNASET2 (ENSCABG00000012143) #12	ENSCABG00000012141 #14	CEP43 (ENSCABG00000012139) #13	ENSCABG00000012137 #14	ENSCABG00000012134	GPR31 (ENSCABG00000012131)	ENSCABG00000012102 #15	TTLL2 (ENSCABG00000012101) #16	UNC93A (ENSCABG00000012100)	AFDN (ENSCABG00000010033) #17	KIF25 (ENSCABG00000010000) #18	ENSCABG00000009988 #19	DACT2 (ENSCABG00000009985) #20	ENSCABG00000009982 #22	ENSCABG00000009979 #21	ENSCABG00000009977 #22	ENSCABG00000009973 #22	SMOC2 (ENSCABG00000009931) #23	THBS2 (ENSCABG00000009929) #24
Goode s thornscrub tortoise	MODERN SPECIES	17	SFT2D1 (ENSGEVG00005010173) #9	MPC1 (ENSGEVG00005010196) #10	RPS6KA2 (ENSGEVG00005010253) #11	RNASET2 (ENSGEVG00005010632) #12	ENSGEVG00005010659 #14	CEP43 (ENSGEVG00005010775) #13	ENSGEVG00005010882 #14	GPR31 (ENSGEVG00005010901)	ENSGEVG00005010956 #15	TTLL2 (ENSGEVG00005011340) #16	UNC93A (ENSGEVG00005011351)	AFDN (ENSGEVG00005011377) #17	KIF25 (ENSGEVG00005011433) #18	FRMD1 (ENSGEVG00005011554)	DACT2 (ENSGEVG00005011972) #20	ENSGEVG00005012040 #22	ENSGEVG00005012187 #21	ENSGEVG00005012264 #22	ENSGEVG00005012338 #22	SMOC2 (ENSGEVG00005012500) #23	THBS2 (ENSGEVG00005013476) #24	WDR27 (ENSGEVG00005013675) #25	C6orf120 (ENSGEVG00005013868) #26	PHF10 (ENSGEVG00005013891) #27	DYNLT2 (ENSGEVG00005013938) #28	ERMARD (ENSGEVG00005014123) #29	ENSGEVG00005014258	DLL1 (ENSGEVG00005014277) #31	FAM120B (ENSGEVG00005014356) #32	ENSGEVG00005014378 #33	TBP (ENSGEVG00005014472) #34
Emydidae	ANCESTRAL SPECIES		ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d.b	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35
Three-toed box turtle	MODERN SPECIES	31	SFT2D1 (ENSTMTG00000021980) #9	MPC1 (ENSTMTG00000021974) #10	RPS6KA2 (ENSTMTG00000021924) #11	RNASET2 (ENSTMTG00000021913) #12	ENSTMTG00000021910 #14	CEP43 (ENSTMTG00000021905) #13	ENSTMTG00000021900 #14	GPR31 (ENSTMTG00000021897)	ENSTMTG00000021889 #15	TTLL2 (ENSTMTG00000021884) #16	UNC93A (ENSTMTG00000021881)	AFDN (ENSTMTG00000021848) #17	KIF25 (ENSTMTG00000021827) #18	FRMD1 (ENSTMTG00000021800)	DACT2 (ENSTMTG00000021787) #20	ENSTMTG00000021781 #22	ENSTMTG00000021772 #21	ENSTMTG00000021767 #22	SMOC2 (ENSTMTG00000021759) #23	THBS2 (ENSTMTG00000021749) #24	WDR27 (ENSTMTG00000021735) #25	C6orf120 (ENSTMTG00000021728) #26	PHF10 (ENSTMTG00000021719) #27	DYNLT2 (ENSTMTG00000021714) #28	ERMARD (ENSTMTG00000021704) #29	ENSTMTG00000021698	DLL1 (ENSTMTG00000021694) #31	FAM120B (ENSTMTG00000021686) #32	PSMB1 (ENSTMTG00000021679) #33	TBP (ENSTMTG00000021675) #34	PDCD2 (ENSTMTG00000021673) #35
Lepidosauria	ANCESTRAL SPECIES		ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Episquamata	DUPLICATION
Episquamata	ANCESTRAL SPECIES		ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.a #22	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000167703	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37	ENSGT00940000154071.B
Common wall lizard	MODERN SPECIES	11	RNASET2 (ENSPMRG00000004913) #12	CEP43 (ENSPMRG00000004931) #13	CCR6 (ENSPMRG00000004939) #14	ENSPMRG00000004945	ENSPMRG00000004951 #15	TTLL2 (ENSPMRG00000004959) #16	UNC93A (ENSPMRG00000004964)	AFDN (ENSPMRG00000004970) #17	ENSPMRG00000004988	ENSPMRG00000004992 #19	ENSPMRG00000004997	DACT2 (ENSPMRG00000005000) #20	ENSPMRG00000005003 #21	ENSPMRG00000005006 ##21	ENSPMRG00000005014 #22	ENSPMRG00000005029 #22	SMOC2 (ENSPMRG00000005044) #23	THBS2 (ENSPMRG00000005076) #24	ENSPMRG00000005097	WDR27 (ENSPMRG00000005105) #25	ENSPMRG00000005127	C6orf120 (ENSPMRG00000005129) #26	PHF10 (ENSPMRG00000005133) #27	DYNLT2 (ENSPMRG00000005140) #28	ERMARD (ENSPMRG00000005147) #29	DLL1 (ENSPMRG00000005159) #31	FAM120B (ENSPMRG00000005168) #32	PSMB1 (ENSPMRG00000005182) #33	TBP (ENSPMRG00000005189) #34	PDCD2 (ENSPMRG00000005193) #35	GNPAT (ENSPMRG00000005198) #36
Argentine black and white tegu	MODERN SPECIES	2	RPS6KA2 (ENSSMRG00000022178) #11	RNASET2 (ENSSMRG00000022176) #12	CEP43 (ENSSMRG00000022175) #13	CCR6 (ENSSMRG00000022174) #14	ENSSMRG00000022173	ENSSMRG00000022172	ENSSMRG00000022171 #15	ENSSMRG00000022170 #16	UNC93A (ENSSMRG00000022169)	ENSSMRG00000022168	AFDN (ENSSMRG00000022167) #17	ENSSMRG00000022163	ENSSMRG00000022159 #19	DACT2 (ENSSMRG00000022156) #20	ENSSMRG00000022154 #21	ENSSMRG00000022152 #22	SMOC2 (ENSSMRG00000022150) #23	THBS2 (ENSSMRG00000022077) #24	WDR27 (ENSSMRG00000022075) #25	C6orf120 (ENSSMRG00000022074) #26	PHF10 (ENSSMRG00000022073) #27	DYNLT2 (ENSSMRG00000022072) #28	ERMARD (ENSSMRG00000022071) #29	DLL1 (ENSSMRG00000022069) #31	FAM120B (ENSSMRG00000022068) #32	PSMB1 (ENSSMRG00000022066) #33	TBP (ENSSMRG00000022065) #34	PDCD2 (ENSSMRG00000022064) #35	GNPAT (ENSSMRG00000022063) #36	C1orf131 (ENSSMRG00000022062) #37	TRIM67 (ENSSMRG00000022059)
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000165210.a.b.a #22
Lizard	DUPLICATION
Lizard	MODERN SPECIES		ENSACAG00000027036 #16	ENSACAG00000010362	ENSACAG00000038019	ENSACAG00000038436	ENSACAG00000037144	ENSACAG00000036902	AFDN (ENSACAG00000008269) #17	KIF25 (ENSACAG00000008439) #18	ENSACAG00000008467 #19	DACT2 (ENSACAG00000008509) #20	ENSACAG00000008518 #21	ENSACAG00000028586 ##21	ENSACAG00000008578 #22	ENSACAG00000025471	ENSACAG00000036715 #22	ENSACAG00000003269 #22	ENSACAG00000041478	ENSACAG00000034793 #23	ENSACAG00000003213 #23	THBS2 (ENSACAG00000002861) #24	ENSACAG00000038415	WDR27 (ENSACAG00000002799) #25	DYNLT2 (ENSACAG00000002791) #28	ERMARD (ENSACAG00000002782) #29	DLL1 (ENSACAG00000002704) #31	FAM120B (ENSACAG00000002686) #32	PSMB1 (ENSACAG00000002641) #33	TBP (ENSACAG00000002576) #34	ENSACAG00000035162	PDCD2 (ENSACAG00000002531) #35	GNPAT (ENSACAG00000002405) #36
Lizard	MODERN SPECIES		ENSACAG00000039063 #15	ENSACAG00000027036 #16	ENSACAG00000010362	ENSACAG00000038019	ENSACAG00000038436	ENSACAG00000037144	ENSACAG00000036902	AFDN (ENSACAG00000008269) #17	KIF25 (ENSACAG00000008439) #18	ENSACAG00000008467 #19	DACT2 (ENSACAG00000008509) #20	ENSACAG00000008518 #21	ENSACAG00000028586 ##21	ENSACAG00000008578 #22	ENSACAG00000025471	ENSACAG00000036715 #22	ENSACAG00000003269 #22	ENSACAG00000041478	ENSACAG00000034793 #23	ENSACAG00000003213 #23	THBS2 (ENSACAG00000002861) #24	ENSACAG00000038415	WDR27 (ENSACAG00000002799) #25	DYNLT2 (ENSACAG00000002791) #28	ERMARD (ENSACAG00000002782) #29	DLL1 (ENSACAG00000002704) #31	FAM120B (ENSACAG00000002686) #32	PSMB1 (ENSACAG00000002641) #33	TBP (ENSACAG00000002576) #34	ENSACAG00000035162	PDCD2 (ENSACAG00000002531) #35
Episquamata	ANCESTRAL SPECIES		ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.a #22	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Toxicofera	ANCESTRAL SPECIES		ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES		ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Indian cobra	MODERN SPECIES		PRR18 (ENSNNAG00000012767) #8	SFT2D1 (ENSNNAG00000012757) #9	MPC1 (ENSNNAG00000012739) #10	RPS6KA2 (ENSNNAG00000009365) #11	RNASET2 (ENSNNAG00000009189) #12	CEP43 (ENSNNAG00000009119) #13	ENSNNAG00000009035 #15	TTLL2 (ENSNNAG00000009020) #16	UNC93A (ENSNNAG00000008992)	AFDN (ENSNNAG00000008706) #17	KIF25 (ENSNNAG00000008631) #18	ENSNNAG00000008575 #19	ENSNNAG00000008556	DACT2 (ENSNNAG00000008534) #20	ENSNNAG00000008509 ##21	ENSNNAG00000008487 #22	ENSNNAG00000008446 #22	SMOC2 (ENSNNAG00000008411) #23	THBS2 (ENSNNAG00000008354) #24	ENSNNAG00000008322 #25	C6orf120 (ENSNNAG00000008305) #26	PHF10 (ENSNNAG00000008230) #27	DYNLT2 (ENSNNAG00000008184) #28	ERMARD (ENSNNAG00000008126) #29	DLL1 (ENSNNAG00000008035) #31	FAM120B (ENSNNAG00000007828) #32	PSMB1 (ENSNNAG00000007781) #33	TBP (ENSNNAG00000007696) #34	PDCD2 (ENSNNAG00000007661) #35	GNPAT (ENSNNAG00000007452) #36	C1orf131 (ENSNNAG00000007418) #37
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Blue-lipped sea krait	MODERN SPECIES	4815																ENSLLTG00000004987 #22
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Eastern brown snake	MODERN SPECIES	26	PRR18 (ENSPTXG00000008539) #8	SFT2D1 (ENSPTXG00000008540) #9	MPC1 (ENSPTXG00000008541) #10	RPS6KA2 (ENSPTXG00000008542) #11	RNASET2 (ENSPTXG00000008543) #12	CEP43 (ENSPTXG00000008544) #13	ENSPTXG00000008545	ENSPTXG00000008546 #15	TTLL2 (ENSPTXG00000008547) #16	UNC93A (ENSPTXG00000008548)	AFDN (ENSPTXG00000008551) #17	KIF25 (ENSPTXG00000008552) #18	FRMD1 (ENSPTXG00000008553)	DACT2 (ENSPTXG00000008554) #20	ENSPTXG00000008556 ##21	ENSPTXG00000008557 #22	ENSPTXG00000008559 #22	ENSPTXG00000008562 #23	THBS2 (ENSPTXG00000008574) #24	WDR27 (ENSPTXG00000009657) #25	C6orf120 (ENSPTXG00000009659) #26	PHF10 (ENSPTXG00000009661) #27	DYNLT2 (ENSPTXG00000009664) #28	ENSPTXG00000009666 #29	ENSPTXG00000009667 #29	DLL1 (ENSPTXG00000009670) #31	FAM120B (ENSPTXG00000009672) #32	PSMB1 (ENSPTXG00000009673) #33	TBP (ENSPTXG00000009674) #34	PDCD2 (ENSPTXG00000009675) #35	GNPAT (ENSPTXG00000009676) #36
Mainland tiger snake	MODERN SPECIES	70	C6orf118 (ENSNSUG00000015018)	PDE10A (ENSNSUG00000014998)	TBXT (ENSNSUG00000014997) #7	SFT2D1 (ENSNSUG00000014996) #9	MPC1 (ENSNSUG00000014995) #10	RPS6KA2 (ENSNSUG00000014994) #11	RNASET2 (ENSNSUG00000014993) #12	CEP43 (ENSNSUG00000014936) #13	TTLL2 (ENSNSUG00000014933) #16	UNC93A (ENSNSUG00000014930)	AFDN (ENSNSUG00000014037) #17	KIF25 (ENSNSUG00000014036) #18	FRMD1 (ENSNSUG00000014035)	DACT2 (ENSNSUG00000014033) #20	ENSNSUG00000014032 ##21	ENSNSUG00000014031 #22
Elapidae	ANCESTRAL SPECIES		ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Indian cobra	MODERN SPECIES		SFT2D1 (ENSNNAG00000012757) #9	MPC1 (ENSNNAG00000012739) #10	RPS6KA2 (ENSNNAG00000009365) #11	RNASET2 (ENSNNAG00000009189) #12	CEP43 (ENSNNAG00000009119) #13	ENSNNAG00000009035 #15	TTLL2 (ENSNNAG00000009020) #16	UNC93A (ENSNNAG00000008992)	AFDN (ENSNNAG00000008706) #17	KIF25 (ENSNNAG00000008631) #18	ENSNNAG00000008575 #19	ENSNNAG00000008556	DACT2 (ENSNNAG00000008534) #20	ENSNNAG00000008509 ##21	ENSNNAG00000008487 #22	ENSNNAG00000008446 #22	SMOC2 (ENSNNAG00000008411) #23	THBS2 (ENSNNAG00000008354) #24	ENSNNAG00000008322 #25	C6orf120 (ENSNNAG00000008305) #26	PHF10 (ENSNNAG00000008230) #27	DYNLT2 (ENSNNAG00000008184) #28	ERMARD (ENSNNAG00000008126) #29	DLL1 (ENSNNAG00000008035) #31	FAM120B (ENSNNAG00000007828) #32	PSMB1 (ENSNNAG00000007781) #33	TBP (ENSNNAG00000007696) #34	PDCD2 (ENSNNAG00000007661) #35	GNPAT (ENSNNAG00000007452) #36	C1orf131 (ENSNNAG00000007418) #37	TRIM67 (ENSNNAG00000007374)
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Mainland tiger snake	MODERN SPECIES	28																ENSNSUG00000004311 #22	SMOC2 (ENSNSUG00000004224) #23	THBS2 (ENSNSUG00000004210) #24	WDR27 (ENSNSUG00000004204) #25	C6orf120 (ENSNSUG00000004198) #26	PHF10 (ENSNSUG00000004196) #27	DYNLT2 (ENSNSUG00000004193) #28	ENSNSUG00000004192 #29	ENSNSUG00000004190 #29	DLL1 (ENSNSUG00000004185) #31	FAM120B (ENSNSUG00000004180) #32	PSMB1 (ENSNSUG00000004178) #33	TBP (ENSNSUG00000003956) #34	PDCD2 (ENSNSUG00000003951) #35	ENSNSUG00000003950 #36	ENSNSUG00000003947
Eastern brown snake	MODERN SPECIES	26	SFT2D1 (ENSPTXG00000008540) #9	MPC1 (ENSPTXG00000008541) #10	RPS6KA2 (ENSPTXG00000008542) #11	RNASET2 (ENSPTXG00000008543) #12	CEP43 (ENSPTXG00000008544) #13	ENSPTXG00000008545	ENSPTXG00000008546 #15	TTLL2 (ENSPTXG00000008547) #16	UNC93A (ENSPTXG00000008548)	AFDN (ENSPTXG00000008551) #17	KIF25 (ENSPTXG00000008552) #18	FRMD1 (ENSPTXG00000008553)	DACT2 (ENSPTXG00000008554) #20	ENSPTXG00000008556 ##21	ENSPTXG00000008557 #22	ENSPTXG00000008559 #22	ENSPTXG00000008562 #23	THBS2 (ENSPTXG00000008574) #24	WDR27 (ENSPTXG00000009657) #25	C6orf120 (ENSPTXG00000009659) #26	PHF10 (ENSPTXG00000009661) #27	DYNLT2 (ENSPTXG00000009664) #28	ENSPTXG00000009666 #29	ENSPTXG00000009667 #29	DLL1 (ENSPTXG00000009670) #31	FAM120B (ENSPTXG00000009672) #32	PSMB1 (ENSPTXG00000009673) #33	TBP (ENSPTXG00000009674) #34	PDCD2 (ENSPTXG00000009675) #35	GNPAT (ENSPTXG00000009676) #36	C1orf131 (ENSPTXG00000009677) #37
Blue-lipped sea krait	MODERN SPECIES	4498																ENSLLTG00000014106 #22
Lizard	MODERN SPECIES		TBP (ENSACAG00000002576) #34	PSMB1 (ENSACAG00000002641) #33	FAM120B (ENSACAG00000002686) #32	DLL1 (ENSACAG00000002704) #31	ERMARD (ENSACAG00000002782) #29	DYNLT2 (ENSACAG00000002791) #28	WDR27 (ENSACAG00000002799) #25	ENSACAG00000038415	THBS2 (ENSACAG00000002861) #24	ENSACAG00000003213 #23	ENSACAG00000034793 #23	ENSACAG00000041478	ENSACAG00000003269 #22	ENSACAG00000036715 #22	ENSACAG00000025471	ENSACAG00000008578 #22	ENSACAG00000028586 ##21	ENSACAG00000008518 #21	DACT2 (ENSACAG00000008509) #20	ENSACAG00000008467 #19	KIF25 (ENSACAG00000008439) #18	AFDN (ENSACAG00000008269) #17	ENSACAG00000036902	ENSACAG00000037144	ENSACAG00000038436	ENSACAG00000038019	ENSACAG00000010362	ENSACAG00000027036 #16	ENSACAG00000039063 #15	ENSACAG00000010431	CCR6 (ENSACAG00000010462) #14
Laterata	ANCESTRAL SPECIES	162															ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22
Common wall lizard	MODERN SPECIES	11	RPS6KA2 (ENSPMRG00000002868) #11	RNASET2 (ENSPMRG00000004913) #12	CEP43 (ENSPMRG00000004931) #13	CCR6 (ENSPMRG00000004939) #14	ENSPMRG00000004945	ENSPMRG00000004951 #15	TTLL2 (ENSPMRG00000004959) #16	UNC93A (ENSPMRG00000004964)	AFDN (ENSPMRG00000004970) #17	ENSPMRG00000004988	ENSPMRG00000004992 #19	ENSPMRG00000004997	DACT2 (ENSPMRG00000005000) #20	ENSPMRG00000005003 #21	ENSPMRG00000005006 ##21	ENSPMRG00000005014 #22	ENSPMRG00000005029 #22	SMOC2 (ENSPMRG00000005044) #23	THBS2 (ENSPMRG00000005076) #24	ENSPMRG00000005097	WDR27 (ENSPMRG00000005105) #25	ENSPMRG00000005127	C6orf120 (ENSPMRG00000005129) #26	PHF10 (ENSPMRG00000005133) #27	DYNLT2 (ENSPMRG00000005140) #28	ERMARD (ENSPMRG00000005147) #29	DLL1 (ENSPMRG00000005159) #31	FAM120B (ENSPMRG00000005168) #32	PSMB1 (ENSPMRG00000005182) #33	TBP (ENSPMRG00000005189) #34	PDCD2 (ENSPMRG00000005193) #35
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Episquamata	ANCESTRAL SPECIES		ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.a #22	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000167703	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Argentine black and white tegu	MODERN SPECIES	2	MPC1 (ENSSMRG00000022180) #10	RPS6KA2 (ENSSMRG00000022178) #11	RNASET2 (ENSSMRG00000022176) #12	CEP43 (ENSSMRG00000022175) #13	CCR6 (ENSSMRG00000022174) #14	ENSSMRG00000022173	ENSSMRG00000022172	ENSSMRG00000022171 #15	ENSSMRG00000022170 #16	UNC93A (ENSSMRG00000022169)	ENSSMRG00000022168	AFDN (ENSSMRG00000022167) #17	ENSSMRG00000022163	ENSSMRG00000022159 #19	DACT2 (ENSSMRG00000022156) #20	ENSSMRG00000022154 #21	ENSSMRG00000022152 #22	SMOC2 (ENSSMRG00000022150) #23	THBS2 (ENSSMRG00000022077) #24	WDR27 (ENSSMRG00000022075) #25	C6orf120 (ENSSMRG00000022074) #26	PHF10 (ENSSMRG00000022073) #27	DYNLT2 (ENSSMRG00000022072) #28	ERMARD (ENSSMRG00000022071) #29	DLL1 (ENSSMRG00000022069) #31	FAM120B (ENSSMRG00000022068) #32	PSMB1 (ENSSMRG00000022066) #33	TBP (ENSSMRG00000022065) #34	PDCD2 (ENSSMRG00000022064) #35	GNPAT (ENSSMRG00000022063) #36	C1orf131 (ENSSMRG00000022062) #37
Common wall lizard	MODERN SPECIES	11	SFT2D1 (ENSPMRG00000002343) #9	MPC1 (ENSPMRG00000002351) #10	RPS6KA2 (ENSPMRG00000002868) #11	RNASET2 (ENSPMRG00000004913) #12	CEP43 (ENSPMRG00000004931) #13	CCR6 (ENSPMRG00000004939) #14	ENSPMRG00000004945	ENSPMRG00000004951 #15	TTLL2 (ENSPMRG00000004959) #16	UNC93A (ENSPMRG00000004964)	AFDN (ENSPMRG00000004970) #17	ENSPMRG00000004988	ENSPMRG00000004992 #19	ENSPMRG00000004997	DACT2 (ENSPMRG00000005000) #20	ENSPMRG00000005003 #21	ENSPMRG00000005006 ##21	ENSPMRG00000005014 #22	ENSPMRG00000005029 #22	SMOC2 (ENSPMRG00000005044) #23	THBS2 (ENSPMRG00000005076) #24	ENSPMRG00000005097	WDR27 (ENSPMRG00000005105) #25	ENSPMRG00000005127	C6orf120 (ENSPMRG00000005129) #26	PHF10 (ENSPMRG00000005133) #27	DYNLT2 (ENSPMRG00000005140) #28	ERMARD (ENSPMRG00000005147) #29	DLL1 (ENSPMRG00000005159) #31	FAM120B (ENSPMRG00000005168) #32	PSMB1 (ENSPMRG00000005182) #33
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35
Lizard	MODERN SPECIES		RNASET2 (ENSACAG00000010505) #12	CEP43 (ENSACAG00000010465) #13	CCR6 (ENSACAG00000010462) #14	ENSACAG00000010431	ENSACAG00000039063 #15	ENSACAG00000027036 #16	ENSACAG00000010362	ENSACAG00000038019	ENSACAG00000038436	ENSACAG00000037144	ENSACAG00000036902	AFDN (ENSACAG00000008269) #17	KIF25 (ENSACAG00000008439) #18	ENSACAG00000008467 #19	DACT2 (ENSACAG00000008509) #20	ENSACAG00000008518 #21	ENSACAG00000028586 ##21	ENSACAG00000008578 #22	ENSACAG00000025471	ENSACAG00000036715 #22	ENSACAG00000003269 #22	ENSACAG00000041478	ENSACAG00000034793 #23	ENSACAG00000003213 #23	THBS2 (ENSACAG00000002861) #24	ENSACAG00000038415	WDR27 (ENSACAG00000002799) #25	DYNLT2 (ENSACAG00000002791) #28	ERMARD (ENSACAG00000002782) #29	DLL1 (ENSACAG00000002704) #31	FAM120B (ENSACAG00000002686) #32
tuatara	MODERN SPECIES	811																ENSSPUG00000003156 #21	SMOC2 (ENSSPUG00000003217) #23	THBS2 (ENSSPUG00000003406) #24	WDR27 (ENSSPUG00000003449) #25	C6orf120 (ENSSPUG00000003506) #26	PHF10 (ENSSPUG00000003514) #27	ENSSPUG00000003524 #28	ERMARD (ENSSPUG00000003534) #29
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Archosauria	ANCESTRAL SPECIES	3	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	60	RPS6KA2 (ENSCPRG00005017518) #11	RNASET2 (ENSCPRG00005017504) #12	CEP43 (ENSCPRG00005017492) #13	CCR6 (ENSCPRG00005017488) #14	ENSCPRG00005017482	GPR31 (ENSCPRG00005017480)	ENSCPRG00005017477 #15	TTLL2 (ENSCPRG00005017471) #16	UNC93A (ENSCPRG00005017469)	AFDN (ENSCPRG00005017449) #17	KIF25 (ENSCPRG00005017436) #18	ENSCPRG00005017434 #19	DACT2 (ENSCPRG00005017431) #20	ENSCPRG00005017422 #22	ENSCPRG00005017416 #21	ENSCPRG00005017412 #21	ENSCPRG00005017411 #22	SMOC2 (ENSCPRG00005017389) #23	ENSCPRG00005017378	THBS2 (ENSCPRG00005017369) #24	WDR27 (ENSCPRG00005017363) #25	C6orf120 (ENSCPRG00005017358) #26	PHF10 (ENSCPRG00005017355) #27	DYNLT2 (ENSCPRG00005017354) #28	ERMARD (ENSCPRG00005017351) #29	DLL1 (ENSCPRG00005017339) #31	FAM120B (ENSCPRG00005017335) #32	PSMB1 (ENSCPRG00005017322) #33	TBP (ENSCPRG00005017317) #34	PDCD2 (ENSCPRG00005017315) #35	GNPAT (ENSCPRG00005017312) #36
Australian saltwater crocodile	MODERN SPECIES	60	MPC1 (ENSCPRG00005017538) #10	RPS6KA2 (ENSCPRG00005017518) #11	RNASET2 (ENSCPRG00005017504) #12	CEP43 (ENSCPRG00005017492) #13	CCR6 (ENSCPRG00005017488) #14	ENSCPRG00005017482	GPR31 (ENSCPRG00005017480)	ENSCPRG00005017477 #15	TTLL2 (ENSCPRG00005017471) #16	UNC93A (ENSCPRG00005017469)	AFDN (ENSCPRG00005017449) #17	KIF25 (ENSCPRG00005017436) #18	ENSCPRG00005017434 #19	DACT2 (ENSCPRG00005017431) #20	ENSCPRG00005017422 #22	ENSCPRG00005017416 #21	ENSCPRG00005017412 #21	ENSCPRG00005017411 #22	SMOC2 (ENSCPRG00005017389) #23	ENSCPRG00005017378	THBS2 (ENSCPRG00005017369) #24	WDR27 (ENSCPRG00005017363) #25	C6orf120 (ENSCPRG00005017358) #26	PHF10 (ENSCPRG00005017355) #27	DYNLT2 (ENSCPRG00005017354) #28	ERMARD (ENSCPRG00005017351) #29	DLL1 (ENSCPRG00005017339) #31	FAM120B (ENSCPRG00005017335) #32	PSMB1 (ENSCPRG00005017322) #33	TBP (ENSCPRG00005017317) #34	PDCD2 (ENSCPRG00005017315) #35
Aves	ANCESTRAL SPECIES	12	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Anatidae	ANCESTRAL SPECIES		ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Pink-footed goose	MODERN SPECIES	169									ENSABRG00000019293 #15	TTLL2 (ENSABRG00000019295) #16	UNC93A (ENSABRG00000019297)	AFDN (ENSABRG00000019309) #17	KIF25 (ENSABRG00000019340) #18	ENSABRG00000019349 #19	DACT2 (ENSABRG00000019363) #20	ENSABRG00000019365 #21	ENSABRG00000019372 #22	SMOC2 (ENSABRG00000019377) #23	ENSABRG00000019382	THBS2 (ENSABRG00000019385) #24	WDR27 (ENSABRG00000019388) #25	C6orf120 (ENSABRG00000019393) #26	PHF10 (ENSABRG00000019394) #27	DYNLT2 (ENSABRG00000019395) #28	ERMARD (ENSABRG00000019396) #29	DLL1 (ENSABRG00000019402) #31	FAM120B (ENSABRG00000019406) #32
Duck	MODERN SPECIES	21	C6orf118 (ENSAPLG00000010023)	PDE10A (ENSAPLG00000009479)	TBXT (ENSAPLG00000018385) #7	SFT2D1 (ENSAPLG00000012881) #9	MPC1 (ENSAPLG00000017567) #10	RPS6KA2 (ENSAPLG00000011253) #11	RNASET2 (ENSAPLG00000010821) #12	CEP43 (ENSAPLG00000010607) #13	CCR6 (ENSAPLG00000010486) #14	TTLL2 (ENSAPLG00000001705) #16	UNC93A (ENSAPLG00000002434)	AFDN (ENSAPLG00000002298) #17	KIF25 (ENSAPLG00000016274) #18	ENSAPLG00000016171 #19	DACT2 (ENSAPLG00000016135) #20	ENSAPLG00000015983 #21	ENSAPLG00000015969 #22	ENSAPLG00000010314 #23	ENSAPLG00000016465 #23	THBS2 (ENSAPLG00000009492) #24	WDR27 (ENSAPLG00000022063) #25	C6orf120 (ENSAPLG00000001155) #26	PHF10 (ENSAPLG00000010634) #27	DYNLT2 (ENSAPLG00000026410) #28	ERMARD (ENSAPLG00000010834) #29	DLL1 (ENSAPLG00000011635) #31	FAM120B (ENSAPLG00000012280) #32	PSMB1 (ENSAPLG00000012435) #33	TBP (ENSAPLG00000012687) #34	ENSAPLG00000018224	PDCD2 (ENSAPLG00000021270) #35
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000155517 #19	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Chicken	MODERN SPECIES	22	PDE10A (ENSGALG00010005999)	TBXT (ENSGALG00010005911) #7	PRR18 (ENSGALG00010005903) #8	SFT2D1 (ENSGALG00010005893) #9	MPC1L (ENSGALG00010005861) #10	RPS6KA2 (ENSGALG00010005839) #11	RNASET2 (ENSGALG00010005789) #12	FGFR1OP (ENSGALG00010006486) #13	CCR6 (ENSGALG00010006499) #14	ENSGALG00010004876 #15	TTLL2 (ENSGALG00010004846) #16	AFDN (ENSGALG00010004951) #17	KIF25 (ENSGALG00010004927) #18	FRMD1 (ENSGALG00010004907) #19	DACT2 (ENSGALG00010006621) #20	SULT (ENSGALG00010006606) #21	SULT6B1L (ENSGALG00010006570) #22	SMOC2 (ENSGALG00010006546) #23	THBS2 (ENSGALG00010004760) #24	WDR27 (ENSGALG00010004715) #25	C6orf120 (ENSGALG00010004666) #26	PHF10 (ENSGALG00010004624) #27	DYNLT2 (ENSGALG00010004602) #28	ERMARD (ENSGALG00010004542) #29	ENSGALG00010004387 #30	DLL1 (ENSGALG00010007927) #31	FAM120B (ENSGALG00010007921) #32	PSMB1 (ENSGALG00010007878) #33	TBP (ENSGALG00010007866) #34	PDCD2 (ENSGALG00010007856) #35	GNPAT (ENSGALG00010010888) #36
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00990000212037	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00990000212037	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000167703	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Golden eagle	MODERN SPECIES	4	GPAT4 (ENSACCG00020007247)	NKX6-3 (ENSACCG00020007231)	ANK1 (ENSACCG00020006597)	KAT6A (ENSACCG00020006033)	AP3M2 (ENSACCG00020006012)	PLAT (ENSACCG00020005990)	IKBKB (ENSACCG00020005961)	VDAC3 (ENSACCG00020005939)	POLB (ENSACCG00020005917)	ENSACCG00020005896 #15	UNC93A (ENSACCG00020005851)	AFDN (ENSACCG00020005738) #17	ENSACCG00020005590	ENSACCG00020005553 #19	DACT2 (ENSACCG00020005532) #20	ENSACCG00020005516 #21	SMOC2 (ENSACCG00020005488) #23	THBS2 (ENSACCG00020005446) #24	WDR27 (ENSACCG00020005400) #25	C6orf120 (ENSACCG00020005387) #26	PHF10 (ENSACCG00020005364) #27	DYNLT2 (ENSACCG00020005347) #28	ERMARD (ENSACCG00020005325) #29	DLL1 (ENSACCG00020005311) #31	FAM120B (ENSACCG00020005298) #32	PSMB1 (ENSACCG00020005287) #33	TBP (ENSACCG00020005281) #34	PDCD2 (ENSACCG00020005273) #35	GNPAT (ENSACCG00020005263) #36	C1orf131 (ENSACCG00020005252) #37	TRIM67 (ENSACCG00020005243)
Kakapo	MODERN SPECIES	2	TBXT (ENSSHBG00005020548) #7	PRR18 (ENSSHBG00005020555) #8	SFT2D1 (ENSSHBG00005020559) #9	MPC1 (ENSSHBG00005020562) #10	RPS6KA2 (ENSSHBG00005020566) #11	RNASET2 (ENSSHBG00005020575) #12	CEP43 (ENSSHBG00005020582) #13	CCR6 (ENSSHBG00005020586) #14	ENSSHBG00005020591	ENSSHBG00005020595 #15	UNC93A (ENSSHBG00005020596)	AFDN (ENSSHBG00005020703) #17	KIF25 (ENSSHBG00005020817) #18	ENSSHBG00005020830 #19	DACT2 (ENSSHBG00005020841) #20	ENSSHBG00005020844 #21	ENSSHBG00005020849 #22	ENSSHBG00005020852 #23	THBS2 (ENSSHBG00005020861) #24	ENSSHBG00005020868 #25	ENSSHBG00005020878 #25	C6orf120 (ENSSHBG00005020882) #26	PHF10 (ENSSHBG00005020884) #27	DYNLT2 (ENSSHBG00005020889) #28	ERMARD (ENSSHBG00005020915) #29	DLL1 (ENSSHBG00005020945) #31	FAM120B (ENSSHBG00005020954) #32	PSMB1 (ENSSHBG00005020961) #33	TBP (ENSSHBG00005020965) #34	PDCD2 (ENSSHBG00005020971) #35	GNPAT (ENSSHBG00005020976) #36
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00990000212037	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Great tit	MODERN SPECIES	22	PDE10A (ENSPMJG00000001349)	TBXT (ENSPMJG00000001409) #7	SFT2D1 (ENSPMJG00000001481) #9	MPC1 (ENSPMJG00000001484) #10	RPS6KA2 (ENSPMJG00000001558) #11	ENSPMJG00000001578	RNASET2 (ENSPMJG00000001581) #12	CEP43 (ENSPMJG00000001586) #13	CCR6 (ENSPMJG00000001598) #14	ENSPMJG00000001619 #15	UNC93A (ENSPMJG00000001629)	AFDN (ENSPMJG00000001693) #17	ENSPMJG00000001762	ENSPMJG00000001768 #19	DACT2 (ENSPMJG00000001809) #20	ENSPMJG00000001815 #21	ENSPMJG00000001821 #22	SMOC2 (ENSPMJG00000001856) #23	THBS2 (ENSPMJG00000001897) #24	ENSPMJG00000002069 #25	ENSPMJG00000002127 #25	C6orf120 (ENSPMJG00000002131) #26	PHF10 (ENSPMJG00000002137) #27	DYNLT2 (ENSPMJG00000002151) #28	ERMARD (ENSPMJG00000002159) #29	DLL1 (ENSPMJG00000002216) #31	FAM120B (ENSPMJG00000002245) #32	PSMB1 (ENSPMJG00000002299) #33	TBP (ENSPMJG00000002308) #34	PDCD2 (ENSPMJG00000002322) #35	GNPAT (ENSPMJG00000002331) #36
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000155310.b	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00980000199980	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Flycatcher	MODERN SPECIES	21	QKI (ENSFALG00000012183)	PDE10A (ENSFALG00000012196)	TBXT (ENSFALG00000012218) #7	SFT2D1 (ENSFALG00000012238) #9	MPC1 (ENSFALG00000029027) #10	RPS6KA2 (ENSFALG00000012267) #11	ENSFALG00000026823	RNASET2 (ENSFALG00000012299) #12	CEP43 (ENSFALG00000012317) #13	CCR6 (ENSFALG00000012331) #14	ENSFALG00000012339	AFDN (ENSFALG00000012348) #17	KIF25 (ENSFALG00000012354) #18	ENSFALG00000024562 #19	DACT2 (ENSFALG00000012374) #20	ENSFALG00000003039 #21	SMOC2 (ENSFALG00000003061) #23	THBS2 (ENSFALG00000003079) #24	WDR27 (ENSFALG00000003136) #25	C6orf120 (ENSFALG00000015337) #26	PHF10 (ENSFALG00000003154) #27	ERMARD (ENSFALG00000003184) #29	DLL1 (ENSFALG00000003196) #31	FAM120B (ENSFALG00000003208) #32	PSMB1 (ENSFALG00000003223) #33	TBP (ENSFALG00000026153) #34	GNPAT (ENSFALG00000003278) #36	C1orf131 (ENSFALG00000003288) #37	TRIM67 (ENSFALG00000008932)	ARV1 (ENSFALG00000026502)	TTC13 (ENSFALG00000003508)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000155310.b	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00980000199980	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	2	QKI (ENSGFOG00000001715)	PDE10A (ENSGFOG00000001765)	TBXT (ENSGFOG00000001906) #7	SFT2D1 (ENSGFOG00000001923) #9	MPC1 (ENSGFOG00000001931) #10	RPS6KA2 (ENSGFOG00000001944) #11	RNASET2 (ENSGFOG00000001966) #12	CEP43 (ENSGFOG00000001972) #13	CCR6 (ENSGFOG00000001979) #14	ENSGFOG00000001983 #15	UNC93A (ENSGFOG00000001997)	AFDN (ENSGFOG00000002033) #17	KIF25 (ENSGFOG00000002173) #18	FRMD1 (ENSGFOG00000002193)	DACT2 (ENSGFOG00000002239) #20	ENSGFOG00000002285 #21	ENSGFOG00000002306 #21	ENSGFOG00000002332 #22
Medium ground finch	MODERN SPECIES	2	PDE10A (ENSGFOG00000001765)	TBXT (ENSGFOG00000001906) #7	SFT2D1 (ENSGFOG00000001923) #9	MPC1 (ENSGFOG00000001931) #10	RPS6KA2 (ENSGFOG00000001944) #11	RNASET2 (ENSGFOG00000001966) #12	CEP43 (ENSGFOG00000001972) #13	CCR6 (ENSGFOG00000001979) #14	ENSGFOG00000001983 #15	UNC93A (ENSGFOG00000001997)	AFDN (ENSGFOG00000002033) #17	KIF25 (ENSGFOG00000002173) #18	FRMD1 (ENSGFOG00000002193)	DACT2 (ENSGFOG00000002239) #20	ENSGFOG00000002285 #21	ENSGFOG00000002306 #21	ENSGFOG00000002332 #22
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00980000199980	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Zebra finch	MODERN SPECIES	23	PDE10A (ENSTGUG00000009390)	TBXT (ENSTGUG00000009448) #7	SFT2D1 (ENSTGUG00000009460) #9	MPC1 (ENSTGUG00000009482) #10	RPS6KA2 (ENSTGUG00000009488) #11	RNASET2 (ENSTGUG00000027712) #12	CEP43 (ENSTGUG00000009547) #13	CCR6 (ENSTGUG00000009563) #14	ENSTGUG00000023539 #15	UNC93A (ENSTGUG00000009567)	AFDN (ENSTGUG00000009578) #17	KIF25 (ENSTGUG00000009635) #18	ENSTGUG00000009646 #19	ENSTGUG00000018926	DACT2 (ENSTGUG00000026616) #20	ENSTGUG00000009671 #21	ENSTGUG00000009675 #22	SMOC2 (ENSTGUG00000009682) #23	THBS2 (ENSTGUG00000009705) #24	WDR27 (ENSTGUG00000009732) #25	C6orf120 (ENSTGUG00000026228) #26	PHF10 (ENSTGUG00000009739) #27	DYNLT2 (ENSTGUG00000009751) #28	ERMARD (ENSTGUG00000009754) #29	DLL1 (ENSTGUG00000009780) #31	FAM120B (ENSTGUG00000009796) #32	PSMB1 (ENSTGUG00000027366) #33	TBP (ENSTGUG00000009824) #34	ENSTGUG00000019043	GNPAT (ENSTGUG00000009841) #36	C1orf131 (ENSTGUG00000023787) #37
Common canary	MODERN SPECIES	20	ARFGEF3 (ENSSCAG00000003112)	NHSL1 (ENSSCAG00000003161)	CCDC28A (ENSSCAG00000003177)	REPS1 (ENSSCAG00000003182)	ABRACL (ENSSCAG00000003188)	ENSSCAG00000003193	TXLNB (ENSSCAG00000003196)	CITED2 (ENSSCAG00000003199)	CEP43 (ENSSCAG00000003203) #13	CCR6 (ENSSCAG00000003209) #14	UNC93A (ENSSCAG00000003215)	AFDN (ENSSCAG00000003228) #17	KIF25 (ENSSCAG00000003262) #18	ENSSCAG00000003268 #19	DACT2 (ENSSCAG00000003276) #20	ENSSCAG00000003282 #21	ENSSCAG00000003285 #22	SMOC2 (ENSSCAG00000003290) #23	THBS2 (ENSSCAG00000003295) #24	WDR27 (ENSSCAG00000003303) #25	C6orf120 (ENSSCAG00000003309) #26	PHF10 (ENSSCAG00000003311) #27	ERMARD (ENSSCAG00000003316) #29	DLL1 (ENSSCAG00000003330) #31	FAM120B (ENSSCAG00000003344) #32	PSMB1 (ENSSCAG00000003360) #33	TBP (ENSSCAG00000003367) #34	GNPAT (ENSSCAG00000003382) #36	ENSSCAG00000003399	FAM89A (ENSSCAG00000003405)	TTC13 (ENSSCAG00000003423)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	104								ENSSCUG00000000281 #15	TTLL2 (ENSSCUG00000000282) #16	UNC93A (ENSSCUG00000000283)	AFDN (ENSSCUG00000000284) #17	KIF25 (ENSSCUG00000000285) #18	FRMD6 (ENSSCUG00000000286) #19	DACT2 (ENSSCUG00000000287) #20	ENSSCUG00000000288 #21	ENSSCUG00000000289 #21	ENSSCUG00000000290 #22
African ostrich	MODERN SPECIES	104									ENSSCUG00000000281 #15	TTLL2 (ENSSCUG00000000282) #16	UNC93A (ENSSCUG00000000283)	AFDN (ENSSCUG00000000284) #17	KIF25 (ENSSCUG00000000285) #18	FRMD6 (ENSSCUG00000000286) #19	DACT2 (ENSSCUG00000000287) #20	ENSSCUG00000000288 #21	ENSSCUG00000000289 #21	ENSSCUG00000000290 #22
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36	ENSGT00390000017022 #37
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Emydidae	ANCESTRAL SPECIES		ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.a.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d.b	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
painted turtle	MODERN SPECIES	12	RPS6KA2 (ENSCPBG00000012629) #11	ENSCPBG00000012579	RNASET2 (ENSCPBG00000012576) #12	ENSCPBG00000012574 #14	CEP43 (ENSCPBG00000012567) #13	ENSCPBG00000012565 #14	ENSCPBG00000012563	GPR31 (ENSCPBG00000012561)	ENSCPBG00000012553 #15	TTLL2 (ENSCPBG00000012551) #16	UNC93A (ENSCPBG00000012535)	AFDN (ENSCPBG00000012527) #17	ENSCPBG00000012524	ENSCPBG00000012522 #19	DACT2 (ENSCPBG00000012519) #20	ENSCPBG00000012517 #21	ENSCPBG00000012515	ENSCPBG00000012512 #22	ENSCPBG00000012509 #22	ENSCPBG00000012498 #23	THBS2 (ENSCPBG00000012494) #24	WDR27 (ENSCPBG00000012489) #25	C6orf120 (ENSCPBG00000012488) #26	PHF10 (ENSCPBG00000012484) #27	DYNLT2 (ENSCPBG00000012481) #28	ERMARD (ENSCPBG00000012480) #29	ENSCPBG00000012474	DLL1 (ENSCPBG00000012470) #31	FAM120B (ENSCPBG00000012465) #32	SRPK2 (ENSCPBG00000012462)	KMT2E (ENSCPBG00000012454)
Three-toed box turtle	MODERN SPECIES	31	MPC1 (ENSTMTG00000021974) #10	RPS6KA2 (ENSTMTG00000021924) #11	RNASET2 (ENSTMTG00000021913) #12	ENSTMTG00000021910 #14	CEP43 (ENSTMTG00000021905) #13	ENSTMTG00000021900 #14	GPR31 (ENSTMTG00000021897)	ENSTMTG00000021889 #15	TTLL2 (ENSTMTG00000021884) #16	UNC93A (ENSTMTG00000021881)	AFDN (ENSTMTG00000021848) #17	KIF25 (ENSTMTG00000021827) #18	FRMD1 (ENSTMTG00000021800)	DACT2 (ENSTMTG00000021787) #20	ENSTMTG00000021781 #22	ENSTMTG00000021772 #21	ENSTMTG00000021767 #22	SMOC2 (ENSTMTG00000021759) #23	THBS2 (ENSTMTG00000021749) #24	WDR27 (ENSTMTG00000021735) #25	C6orf120 (ENSTMTG00000021728) #26	PHF10 (ENSTMTG00000021719) #27	DYNLT2 (ENSTMTG00000021714) #28	ERMARD (ENSTMTG00000021704) #29	ENSTMTG00000021698	DLL1 (ENSTMTG00000021694) #31	FAM120B (ENSTMTG00000021686) #32	PSMB1 (ENSTMTG00000021679) #33	TBP (ENSTMTG00000021675) #34	PDCD2 (ENSTMTG00000021673) #35	GNPAT (ENSTMTG00000021668) #36
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT01030000234667.b.a #14	ENSGT00390000007441 #13	ENSGT01030000234667.b.b #14	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.b.f #22	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.e.b #22	ENSGT00940000165210.a.b.e.a #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017.pb #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00390000001424.d	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35
Abingdon island giant tortoise	MODERN SPECIES	64	ENSCABG00000012145 #11	RNASET2 (ENSCABG00000012143) #12	ENSCABG00000012141 #14	CEP43 (ENSCABG00000012139) #13	ENSCABG00000012137 #14	ENSCABG00000012134	GPR31 (ENSCABG00000012131)	ENSCABG00000012102 #15	TTLL2 (ENSCABG00000012101) #16	UNC93A (ENSCABG00000012100)	AFDN (ENSCABG00000010033) #17	KIF25 (ENSCABG00000010000) #18	ENSCABG00000009988 #19	DACT2 (ENSCABG00000009985) #20	ENSCABG00000009982 #22	ENSCABG00000009979 #21	ENSCABG00000009977 #22	ENSCABG00000009973 #22	SMOC2 (ENSCABG00000009931) #23	THBS2 (ENSCABG00000009929) #24
Goode s thornscrub tortoise	MODERN SPECIES	17	MPC1 (ENSGEVG00005010196) #10	RPS6KA2 (ENSGEVG00005010253) #11	RNASET2 (ENSGEVG00005010632) #12	ENSGEVG00005010659 #14	CEP43 (ENSGEVG00005010775) #13	ENSGEVG00005010882 #14	GPR31 (ENSGEVG00005010901)	ENSGEVG00005010956 #15	TTLL2 (ENSGEVG00005011340) #16	UNC93A (ENSGEVG00005011351)	AFDN (ENSGEVG00005011377) #17	KIF25 (ENSGEVG00005011433) #18	FRMD1 (ENSGEVG00005011554)	DACT2 (ENSGEVG00005011972) #20	ENSGEVG00005012040 #22	ENSGEVG00005012187 #21	ENSGEVG00005012264 #22	ENSGEVG00005012338 #22	SMOC2 (ENSGEVG00005012500) #23	THBS2 (ENSGEVG00005013476) #24	WDR27 (ENSGEVG00005013675) #25	C6orf120 (ENSGEVG00005013868) #26	PHF10 (ENSGEVG00005013891) #27	DYNLT2 (ENSGEVG00005013938) #28	ERMARD (ENSGEVG00005014123) #29	ENSGEVG00005014258	DLL1 (ENSGEVG00005014277) #31	FAM120B (ENSGEVG00005014356) #32	ENSGEVG00005014378 #33	TBP (ENSGEVG00005014472) #34	PDCD2 (ENSGEVG00005014496) #35
Chinese turtle	MODERN SPECIES	999														DACT2 (ENSPSIG00000006859) #20	ENSPSIG00000007121 #22	ENSPSIG00000007299 #21	ENSPSIG00000007797	SMOC2 (ENSPSIG00000007816) #23	THBS2 (ENSPSIG00000009538) #24	ENSPSIG00000001896	WDR27 (ENSPSIG00000006729) #25	C6orf120 (ENSPSIG00000001898) #26	PHF10 (ENSPSIG00000007518) #27	ERMARD (ENSPSIG00000008956) #29	DLL1 (ENSPSIG00000009844) #31	FAM120B (ENSPSIG00000010353) #32	PSMB1 (ENSPSIG00000011467) #33	TBP (ENSPSIG00000013104) #34	PDCD2 (ENSPSIG00000013461) #35	GNPAT (ENSPSIG00000013801) #36	C1orf131 (ENSPSIG00000014437) #37
Sauria	ANCESTRAL SPECIES																	ENSGT00940000165210.b ##21
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000165210.b ##21
Episquamata	ANCESTRAL SPECIES		ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.a.b.a #22	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Laterata	ANCESTRAL SPECIES	162																ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22
Common wall lizard	MODERN SPECIES	11	MPC1 (ENSPMRG00000002351) #10	RPS6KA2 (ENSPMRG00000002868) #11	RNASET2 (ENSPMRG00000004913) #12	CEP43 (ENSPMRG00000004931) #13	CCR6 (ENSPMRG00000004939) #14	ENSPMRG00000004945	ENSPMRG00000004951 #15	TTLL2 (ENSPMRG00000004959) #16	UNC93A (ENSPMRG00000004964)	AFDN (ENSPMRG00000004970) #17	ENSPMRG00000004988	ENSPMRG00000004992 #19	ENSPMRG00000004997	DACT2 (ENSPMRG00000005000) #20	ENSPMRG00000005003 #21	ENSPMRG00000005006 ##21	ENSPMRG00000005014 #22	ENSPMRG00000005029 #22	SMOC2 (ENSPMRG00000005044) #23	THBS2 (ENSPMRG00000005076) #24	ENSPMRG00000005097	WDR27 (ENSPMRG00000005105) #25	ENSPMRG00000005127	C6orf120 (ENSPMRG00000005129) #26	PHF10 (ENSPMRG00000005133) #27	DYNLT2 (ENSPMRG00000005140) #28	ERMARD (ENSPMRG00000005147) #29	DLL1 (ENSPMRG00000005159) #31	FAM120B (ENSPMRG00000005168) #32	PSMB1 (ENSPMRG00000005182) #33	TBP (ENSPMRG00000005189) #34
Toxicofera	ANCESTRAL SPECIES		ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT01030000234667.b #14	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.a.a #21	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b #22	ENSGT00390000018436.a.b #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024 #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000175608	ENSGT00940000156603 #35	ENSGT00520000055570.B #36
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35
Indian cobra	MODERN SPECIES		TBXT (ENSNNAG00000012781) #7	PRR18 (ENSNNAG00000012767) #8	SFT2D1 (ENSNNAG00000012757) #9	MPC1 (ENSNNAG00000012739) #10	RPS6KA2 (ENSNNAG00000009365) #11	RNASET2 (ENSNNAG00000009189) #12	CEP43 (ENSNNAG00000009119) #13	ENSNNAG00000009035 #15	TTLL2 (ENSNNAG00000009020) #16	UNC93A (ENSNNAG00000008992)	AFDN (ENSNNAG00000008706) #17	KIF25 (ENSNNAG00000008631) #18	ENSNNAG00000008575 #19	ENSNNAG00000008556	DACT2 (ENSNNAG00000008534) #20	ENSNNAG00000008509 ##21	ENSNNAG00000008487 #22	ENSNNAG00000008446 #22	SMOC2 (ENSNNAG00000008411) #23	THBS2 (ENSNNAG00000008354) #24	ENSNNAG00000008322 #25	C6orf120 (ENSNNAG00000008305) #26	PHF10 (ENSNNAG00000008230) #27	DYNLT2 (ENSNNAG00000008184) #28	ERMARD (ENSNNAG00000008126) #29	DLL1 (ENSNNAG00000008035) #31	FAM120B (ENSNNAG00000007828) #32	PSMB1 (ENSNNAG00000007781) #33	TBP (ENSNNAG00000007696) #34	PDCD2 (ENSNNAG00000007661) #35	GNPAT (ENSNNAG00000007452) #36
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000156543	ENSGT00940000157912 #7	ENSGT00390000002164 #8	ENSGT00390000018525.a.a #9	ENSGT00510000046988 #10	ENSGT00940000159956.j #11	ENSGT00640000091563.a #12	ENSGT00390000007441 #13	ENSGT00530000063927.a.a #15	ENSGT00940000162752 #16	ENSGT00530000063359.A	ENSGT00940000155237 #17	ENSGT00940000162166 #18	ENSGT00940000162787	ENSGT00950000183181.A.a #20	ENSGT00940000165210.b ##21	ENSGT00940000165210.a.b.b.a #22	ENSGT00940000165210.a.b.b.b #22	ENSGT00390000018436.a.b.i #23	ENSGT00940000157846 #24	ENSGT00390000012017 #25	ENSGT00390000018879 #26	ENSGT00940000155172 #27	ENSGT00940000160069 #28	ENSGT00390000001024.c #29	ENSGT00390000001024.d #29	ENSGT00940000159781 #31	ENSGT00530000063168.b #32	ENSGT00550000075035 #33	ENSGT00940000157474 #34	ENSGT00940000156603 #35
Eastern brown snake	DUPLICATION
Eastern brown snake	DUPLICATION
Eastern brown snake	DUPLICATION
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	733																ENSPTXG00000016941 ##21
Eastern brown snake	MODERN SPECIES	735																ENSPTXG00000016953 ##21
Eastern brown snake	MODERN SPECIES	736																ENSPTXG00000016961 ##21
Eastern brown snake	MODERN SPECIES	734																ENSPTXG00000016945 ##21
Eastern brown snake	MODERN SPECIES	26	TBXT (ENSPTXG00000008538) #7	PRR18 (ENSPTXG00000008539) #8	SFT2D1 (ENSPTXG00000008540) #9	MPC1 (ENSPTXG00000008541) #10	RPS6KA2 (ENSPTXG00000008542) #11	RNASET2 (ENSPTXG00000008543) #12	CEP43 (ENSPTXG00000008544) #13	ENSPTXG00000008545	ENSPTXG00000008546 #15	TTLL2 (ENSPTXG00000008547) #16	UNC93A (ENSPTXG00000008548)	AFDN (ENSPTXG00000008551) #17	KIF25 (ENSPTXG00000008552) #18	FRMD1 (ENSPTXG00000008553)	DACT2 (ENSPTXG00000008554) #20	ENSPTXG00000008556 ##21	ENSPTXG00000008557 #22	ENSPTXG00000008559 #22	ENSPTXG00000008562 #23	THBS2 (ENSPTXG00000008574) #24	WDR27 (ENSPTXG00000009657) #25	C6orf120 (ENSPTXG00000009659) #26	PHF10 (ENSPTXG00000009661) #27	DYNLT2 (ENSPTXG00000009664) #28	ENSPTXG00000009666 #29	ENSPTXG00000009667 #29	DLL1 (ENSPTXG00000009670) #31	FAM120B (ENSPTXG00000009672) #32	PSMB1 (ENSPTXG00000009673) #33	TBP (ENSPTXG00000009674) #34	PDCD2 (ENSPTXG00000009675) #35
Mainland tiger snake	MODERN SPECIES	70	QKI (ENSNSUG00000015021)	C6orf118 (ENSNSUG00000015018)	PDE10A (ENSNSUG00000014998)	TBXT (ENSNSUG00000014997) #7	SFT2D1 (ENSNSUG00000014996) #9	MPC1 (ENSNSUG00000014995) #10	RPS6KA2 (ENSNSUG00000014994) #11	RNASET2 (ENSNSUG00000014993) #12	CEP43 (ENSNSUG00000014936) #13	TTLL2 (ENSNSUG00000014933) #16	UNC93A (ENSNSUG00000014930)	AFDN (ENSNSUG00000014037) #17	KIF25 (ENSNSUG00000014036) #18	FRMD1 (ENSNSUG00000014035)	DACT2 (ENSNSUG00000014033) #20	ENSNSUG00000014032 ##21	ENSNSUG00000014031 #22
Blue-lipped sea krait	MODERN SPECIES	1109																ENSLLTG00000007632 ##21
Lizard	MODERN SPECIES		CEP43 (ENSACAG00000010465) #13	CCR6 (ENSACAG00000010462) #14	ENSACAG00000010431	ENSACAG00000039063 #15	ENSACAG00000027036 #16	ENSACAG00000010362	ENSACAG00000038019	ENSACAG00000038436	ENSACAG00000037144	ENSACAG00000036902	AFDN (ENSACAG00000008269) #17	KIF25 (ENSACAG00000008439) #18	ENSACAG00000008467 #19	DACT2 (ENSACAG00000008509) #20	ENSACAG00000008518 #21	ENSACAG00000028586 ##21	ENSACAG00000008578 #22	ENSACAG00000025471	ENSACAG00000036715 #22	ENSACAG00000003269 #22	ENSACAG00000041478	ENSACAG00000034793 #23	ENSACAG00000003213 #23	THBS2 (ENSACAG00000002861) #24	ENSACAG00000038415	WDR27 (ENSACAG00000002799) #25	DYNLT2 (ENSACAG00000002791) #28	ERMARD (ENSACAG00000002782) #29	DLL1 (ENSACAG00000002704) #31	FAM120B (ENSACAG00000002686) #32	PSMB1 (ENSACAG00000002641) #33
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Theria	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000165210 #21
Giant Panda	MODERN SPECIES	539																ENSAMEG00000030998 #21