Mus	ANCESTRAL SPECIES	3	ENSGT00390000013792	ENSGT01000000214413.b.a.b.b.b	ENSGT00730000111432	ENSGT00900000141054	ENSGT00940000160122	ENSGT00940000153497.A #12	ENSGT00390000010531 #13	ENSGT00940000160546 #14	ENSGT00940000161806 #15	ENSGT00510000047137 #16	ENSGT00510000048446 #17	ENSGT01060000251964 #18	ENSGT00940000158374 #19	ENSGT00940000158896 #20	ENSGT00940000162836 #21	ENSGT00940000162427.i #22	ENSGT00940000162566 #23	ENSGT00940000157799 #24	ENSGT00390000003047.d #25	ENSGT00940000162911 #26	ENSGT00940000160951 #28	ENSGT01030000234571.a.b #29	ENSGT00940000156971.B.ab #30	ENSGT00390000001652.f.a #31	ENSGT00390000003623 #32	ENSGT00950000183153.c.b.a.b #33	ENSGT00940000154171.B #34	ENSGT00520000060291 #35	ENSGT00530000063489.b #37	ENSGT00390000013405	ENSGT00390000014490
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000013792	ENSGT01000000214413.b.a.b.b.b	ENSGT00730000111432	ENSGT00900000141054	ENSGT00940000160122	ENSGT00940000153497.A #12	ENSGT00390000010531 #13	ENSGT00940000160546 #14	ENSGT00940000161806 #15	ENSGT00510000047137 #16	ENSGT00510000048446 #17	ENSGT01060000251964 #18	ENSGT00940000158374 #19	ENSGT00940000158896 #20	ENSGT00940000162836 #21	ENSGT00940000162427.i #22	ENSGT00940000162566 #23	ENSGT00940000157799 #24	ENSGT00390000003047.d #25	ENSGT00940000162911 #26	ENSGT00860000136239 #27	ENSGT00940000160951 #28	ENSGT01030000234571.a.b #29	ENSGT00940000156971.B.ab #30	ENSGT00390000001652.f.a #31	ENSGT00390000003623 #32	ENSGT00950000183153.c.b.a.b #33	ENSGT00940000154171.B #34	ENSGT00520000060291 #35	ENSGT00530000063489.b #37	ENSGT00390000013405
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000013792	ENSGT01000000214413.b.a.b.b.b	ENSGT00730000111432	ENSGT00900000141054	ENSGT00940000160122	ENSGT00940000153497.A #12	ENSGT00390000010531 #13	ENSGT00940000160546 #14	ENSGT00940000161806 #15	ENSGT00510000047137 #16	ENSGT00510000048446 #17	ENSGT01060000251964 #18	ENSGT00940000158374 #19	ENSGT00940000158896 #20	ENSGT00940000162836 #21	ENSGT00940000162427.i #22	ENSGT00940000162566 #23	ENSGT00940000157799 #24	ENSGT00390000003047.d #25	ENSGT00940000162911 #26	ENSGT00860000136239 #27	ENSGT00940000160951 #28	ENSGT01030000234571.a.b #29	ENSGT00940000156971.B.ab #30	ENSGT00390000001652.f.a #31	ENSGT00390000003623 #32	ENSGT00950000183153.c.b.a.b #33	ENSGT00940000154171.B #34	ENSGT00520000060291 #35	ENSGT00530000063489.b #37	ENSGT00390000013405
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000013792	ENSGT01000000214413.b.a.b.b.b	ENSGT00730000111432	ENSGT00900000141054	ENSGT00940000160122	ENSGT00940000153497.A #12	ENSGT00390000010531 #13	ENSGT00940000160546 #14	ENSGT00940000161806 #15	ENSGT00510000047137 #16	ENSGT00510000048446 #17	ENSGT01060000251964 #18	ENSGT00940000158374 #19	ENSGT00940000158896 #20	ENSGT00940000162836 #21	ENSGT00940000162427.i #22	ENSGT00940000162566 #23	ENSGT00940000157799 #24	ENSGT00390000003047.d #25	ENSGT00940000162911 #26	ENSGT00860000136239 #27	ENSGT00940000160951 #28	ENSGT01030000234571.a.b #29	ENSGT00940000156971.B.ab #30	ENSGT00390000001652.f.a #31	ENSGT00390000003623 #32	ENSGT00950000183153.c.b.a.b #33	ENSGT00940000154171.B #34	ENSGT00520000060291 #35	ENSGT00530000063489.b #37	ENSGT00390000013405
Steppe mouse	MODERN SPECIES	3338						Prkcz (ENSMSIG00000016904) #12	ENSMSIG00000016849 #13	Ski (ENSMSIG00000016784) #14	Morn1 (ENSMSIG00000016759) #15	ENSMSIG00000016715 #16	Pex10 (ENSMSIG00000016702) #17	ENSMSIG00000016697 #18	Plch2 (ENSMSIG00000016342) #19	Pank4 (ENSMSIG00000016251) #20	ENSMSIG00000016236 #21	Tnfrsf14 (ENSMSIG00000016183) #22	Prxl2b (ENSMSIG00000016156) #23	Mmel1 (ENSMSIG00000015971) #24	ENSMSIG00000015948 #25	Actrt2 (ENSMSIG00000015935) #26	ENSMSIG00000015908 #27	Prdm16 (ENSMSIG00000015349) #28	Arhgef16 (ENSMSIG00000015285) #29	Megf6 (ENSMSIG00000015184) #30	ENSMSIG00000015161 #31	Wrap73 (ENSMSIG00000015120) #32	Trp73 (ENSMSIG00000014841) #33	Ccdc27 (ENSMSIG00000014782) #34	Smim1 (ENSMSIG00000014746) #35	ENSMSIG00000014737 #36	Lrrc47 (ENSMSIG00000014708) #37
spretus	MODERN SPECIES	13	Slc35e2 (MGP_SPRETEiJ_G0027886)	Nadk (MGP_SPRETEiJ_G0027885)	MGP_SPRETEiJ_G0027884	Tmem52 (MGP_SPRETEiJ_G0027883)	Cfap74 (MGP_SPRETEiJ_G0027882)	Gabrd (MGP_SPRETEiJ_G0027881)	Prkcz (MGP_SPRETEiJ_G0027880) #12	Faap20 (MGP_SPRETEiJ_G0027879) #13	Ski (MGP_SPRETEiJ_G0027878) #14	Morn1 (MGP_SPRETEiJ_G0027877) #15	Rer1 (MGP_SPRETEiJ_G0027876) #16	Pex10 (MGP_SPRETEiJ_G0027875) #17	Plch2 (MGP_SPRETEiJ_G0027874) #19	Pank4 (MGP_SPRETEiJ_G0027873) #20	Hes5 (MGP_SPRETEiJ_G0027872) #21	Tnfrsf14 (MGP_SPRETEiJ_G0027871) #22	Prxl2b (MGP_SPRETEiJ_G0027870) #23	Mmel1 (MGP_SPRETEiJ_G0027869) #24	MGP_SPRETEiJ_G0027868 #25	Actrt2 (MGP_SPRETEiJ_G0027867) #26	MGP_SPRETEiJ_G0027866 #27	Prdm16 (MGP_SPRETEiJ_G0027865) #28	Arhgef16 (MGP_SPRETEiJ_G0027864) #29	Megf6 (MGP_SPRETEiJ_G0027863) #30	Tprgl (MGP_SPRETEiJ_G0027862) #31	Wrap73 (MGP_SPRETEiJ_G0027861) #32	Trp73 (MGP_SPRETEiJ_G0027860) #33	Ccdc27 (MGP_SPRETEiJ_G0027859) #34	Smim1 (MGP_SPRETEiJ_G0027858) #35	Lrrc47 (MGP_SPRETEiJ_G0027857) #37	Cep104 (MGP_SPRETEiJ_G0027856)
Mouse	MODERN SPECIES	13	Slc35e2 (ENSMUSG00000042202)	Nadk (ENSMUSG00000029063)	Gnb1 (ENSMUSG00000029064)	Tmem52 (ENSMUSG00000023153)	Cfap74 (ENSMUSG00000078490)	Gabrd (ENSMUSG00000029054)	Prkcz (ENSMUSG00000029053) #12	Faap20 (ENSMUSG00000073684) #13	Ski (ENSMUSG00000029050) #14	Morn1 (ENSMUSG00000029049) #15	Rer1 (ENSMUSG00000029048) #16	Pex10 (ENSMUSG00000029047) #17	Plch2 (ENSMUSG00000029055) #19	Pank4 (ENSMUSG00000029056) #20	Hes5 (ENSMUSG00000048001) #21	Tnfrsf14 (ENSMUSG00000042333) #22	Prxl2b (ENSMUSG00000029059) #23	Mmel1 (ENSMUSG00000058183) #24	Ttc34 (ENSMUSG00000046637) #25	Actrt2 (ENSMUSG00000051276) #26	Prdm16 (ENSMUSG00000039410) #28	Arhgef16 (ENSMUSG00000029032) #29	Megf6 (ENSMUSG00000057751) #30	Tprgl (ENSMUSG00000029030) #31	Wrap73 (ENSMUSG00000029029) #32	Trp73 (ENSMUSG00000029026) #33	Ccdc27 (ENSMUSG00000039492) #34	Smim1 (ENSMUSG00000078350) #35	Lrrc47 (ENSMUSG00000029028) #37	Cep104 (ENSMUSG00000039523)	Dffb (ENSMUSG00000029027)
Ryukyu mouse	MODERN SPECIES	13	Slc35e2 (MGP_CAROLIEiJ_G0026893)	Nadk (MGP_CAROLIEiJ_G0026892)	Gnb1 (MGP_CAROLIEiJ_G0026891)	Tmem52 (MGP_CAROLIEiJ_G0026890)	Cfap74 (MGP_CAROLIEiJ_G0026889)	Gabrd (MGP_CAROLIEiJ_G0026888)	Prkcz (MGP_CAROLIEiJ_G0026887) #12	Faap20 (MGP_CAROLIEiJ_G0026886) #13	Ski (MGP_CAROLIEiJ_G0026885) #14	Morn1 (MGP_CAROLIEiJ_G0026884) #15	Rer1 (MGP_CAROLIEiJ_G0026883) #16	Pex10 (MGP_CAROLIEiJ_G0026882) #17	Plch2 (MGP_CAROLIEiJ_G0026881) #19	Pank4 (MGP_CAROLIEiJ_G0026880) #20	Hes5 (MGP_CAROLIEiJ_G0026879) #21	Tnfrsf14 (MGP_CAROLIEiJ_G0026878) #22	Prxl2b (MGP_CAROLIEiJ_G0026877) #23	Mmel1 (MGP_CAROLIEiJ_G0026876) #24	MGP_CAROLIEiJ_G0026875 #25	Actrt2 (MGP_CAROLIEiJ_G0026874) #26	MGP_CAROLIEiJ_G0026873 #27	Prdm16 (MGP_CAROLIEiJ_G0026872) #28	Arhgef16 (MGP_CAROLIEiJ_G0026871) #29	Megf6 (MGP_CAROLIEiJ_G0026870) #30	Tprgl (MGP_CAROLIEiJ_G0026869) #31	Wrap73 (MGP_CAROLIEiJ_G0026868) #32	Trp73 (MGP_CAROLIEiJ_G0026867) #33	Ccdc27 (MGP_CAROLIEiJ_G0026866) #34	Smim1 (MGP_CAROLIEiJ_G0026865) #35	Lrrc47 (MGP_CAROLIEiJ_G0026864) #37	Cep104 (MGP_CAROLIEiJ_G0026863)
Shrew mouse	MODERN SPECIES	19	Slc35e2 (MGP_PahariEiJ_G0029241)	Nadk (MGP_PahariEiJ_G0029240)	Gnb1 (MGP_PahariEiJ_G0029239)	Tmem52 (MGP_PahariEiJ_G0029238)	Cfap74 (MGP_PahariEiJ_G0029237)	Gabrd (MGP_PahariEiJ_G0029236)	Prkcz (MGP_PahariEiJ_G0029235) #12	Faap20 (MGP_PahariEiJ_G0029234) #13	Ski (MGP_PahariEiJ_G0029233) #14	Morn1 (MGP_PahariEiJ_G0029232) #15	Rer1 (MGP_PahariEiJ_G0029231) #16	MGP_PahariEiJ_G0029230 #17	Plch2 (MGP_PahariEiJ_G0029229) #19	Pank4 (MGP_PahariEiJ_G0029228) #20	Hes5 (MGP_PahariEiJ_G0029227) #21	Tnfrsf14 (MGP_PahariEiJ_G0029226) #22	Prxl2b (MGP_PahariEiJ_G0029225) #23	Mmel1 (MGP_PahariEiJ_G0029224) #24	MGP_PahariEiJ_G0029223 #25	Actrt2 (MGP_PahariEiJ_G0029222) #26	MGP_PahariEiJ_G0029221 #27	Prdm16 (MGP_PahariEiJ_G0029220) #28	MGP_PahariEiJ_G0029219 ##29	Megf6 (MGP_PahariEiJ_G0029218) #30	Tprgl (MGP_PahariEiJ_G0029217) #31	Wrap73 (MGP_PahariEiJ_G0029216) #32	Trp73 (MGP_PahariEiJ_G0029215) #33	Ccdc27 (MGP_PahariEiJ_G0029214) #34	Smim1 (MGP_PahariEiJ_G0029213) #35	Lrrc47 (MGP_PahariEiJ_G0029212) #37	Cep104 (MGP_PahariEiJ_G0029211)