Murinae	ANCESTRAL SPECIES	5	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096 #7	ENSGT00940000157025 #8	ENSGT00940000158175 #10	ENSGT00940000155356 #11	ENSGT00940000158083 #13	ENSGT00940000157665 #14	ENSGT00940000156361.B #15	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #17	ENSGT00950000183011.c.a.a #18	ENSGT00940000158947 #19	ENSGT00390000016950 #20	ENSGT00390000018003.a #21	ENSGT00940000163318 #22	ENSGT00390000003368.d #23	ENSGT00940000158152 #24	ENSGT00940000157504 #25	ENSGT00390000007725.A.b #26	ENSGT00390000012496.a #27	ENSGT00390000019377.b #28	ENSGT00940000162602 #29	ENSGT00940000160364 #30	ENSGT01050000244827.B #31	ENSGT00940000154840.b #32	ENSGT00940000155177.b #33	ENSGT01030000234540.E #34	ENSGT00940000158367 #35	ENSGT00940000161722 #36	ENSGT00940000162718 #37
Mus	ANCESTRAL SPECIES	7	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096 #7	ENSGT00940000157025 #8	ENSGT00940000158175 #10	ENSGT00940000155356 #11	ENSGT00940000158083 #13	ENSGT00940000157665 #14	ENSGT00940000156361.B #15	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #17	ENSGT00950000183011.c.a.a #18	ENSGT00940000158947 #19	ENSGT00390000016950 #20	ENSGT00390000018003.a #21	ENSGT00940000163318 #22	ENSGT00390000003368.d #23	ENSGT00940000158152 #24	ENSGT00940000157504 #25	ENSGT00390000007725.A.b #26	ENSGT00390000012496.a #27	ENSGT00390000019377.b #28	ENSGT00940000162602 #29	ENSGT00940000160364 #30	ENSGT01050000244827.B #31	ENSGT00940000154840.b #32	ENSGT00940000155177.b #33	ENSGT01030000234540.E #34	ENSGT00940000158367 #35	ENSGT00940000161722 #36	ENSGT00940000162718 #37
Shrew mouse	MODERN SPECIES	17	Bcl2l15 (MGP_PahariEiJ_G0026901) #7	MGP_PahariEiJ_G0026900 #8	MGP_PahariEiJ_G0026899 #9	Dclre1b (MGP_PahariEiJ_G0026898) #10	Hipk1 (MGP_PahariEiJ_G0026897) #11	MGP_PahariEiJ_G0026896 #12	Olfml3 (MGP_PahariEiJ_G0026895) #13	Syt6 (MGP_PahariEiJ_G0026894) #14	Trim33 (MGP_PahariEiJ_G0026893) #15	Bcas2 (MGP_PahariEiJ_G0026892) #16	Dennd2c (MGP_PahariEiJ_G0026891) #17	Ampd1 (MGP_PahariEiJ_G0026890) #18	Nras (MGP_PahariEiJ_G0026889) #19	Csde1 (MGP_PahariEiJ_G0026888) #20	Sike1 (MGP_PahariEiJ_G0026887) #21	Nr1h5 (MGP_PahariEiJ_G0026886) #22	Sycp1 (MGP_PahariEiJ_G0026885) #23	Tshb (MGP_PahariEiJ_G0026884) #24	Tspan2 (MGP_PahariEiJ_G0026883) #25	Ngf (MGP_PahariEiJ_G0026882) #26	Vangl1 (MGP_PahariEiJ_G0026881) #27	Casq2 (MGP_PahariEiJ_G0026880) #28	Nhlh2 (MGP_PahariEiJ_G0026879) #29	Slc22a15 (MGP_PahariEiJ_G0026878) #30	Mab21l3 (MGP_PahariEiJ_G0026877) #31	Atp1a1 (MGP_PahariEiJ_G0026876) #32	Igsf3 (MGP_PahariEiJ_G0026875) #33	Cd2 (MGP_PahariEiJ_G0026874) #34	Ptgfrn (MGP_PahariEiJ_G0026873) #35	Cd101 (MGP_PahariEiJ_G0026872) #36	Ttf2 (MGP_PahariEiJ_G0026871) #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096 #7	ENSGT00940000157025 #8	ENSGT00940000158175 #10	ENSGT00940000155356 #11	ENSGT00940000158083 #13	ENSGT00940000157665 #14	ENSGT00940000156361.B #15	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #17	ENSGT00950000183011.c.a.a #18	ENSGT00940000158947 #19	ENSGT00390000016950 #20	ENSGT00390000018003.a #21	ENSGT00940000163318 #22	ENSGT00390000003368.d #23	ENSGT00940000158152 #24	ENSGT00940000157504 #25	ENSGT00390000007725.A.b #26	ENSGT00390000012496.a #27	ENSGT00390000019377.b #28	ENSGT00940000162602 #29	ENSGT00940000160364 #30	ENSGT01050000244827.B #31	ENSGT00940000154840.b #32	ENSGT00940000155177.b #33	ENSGT01030000234540.E #34	ENSGT00940000158367 #35	ENSGT00940000161722 #36	ENSGT00940000162718 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096 #7	ENSGT00940000157025 #8	ENSGT00940000158175 #10	ENSGT00940000155356 #11	ENSGT00940000158083 #13	ENSGT00940000157665 #14	ENSGT00940000156361.B #15	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #17	ENSGT00950000183011.c.a.a #18	ENSGT00940000158947 #19	ENSGT00390000016950 #20	ENSGT00390000018003.a #21	ENSGT00940000163318 #22	ENSGT00390000003368.d #23	ENSGT00940000158152 #24	ENSGT00940000157504 #25	ENSGT00390000007725.A.b #26	ENSGT00390000012496.a #27	ENSGT00390000019377.b #28	ENSGT00940000162602 #29	ENSGT00940000160364 #30	ENSGT01050000244827.B #31	ENSGT00940000154840.b #32	ENSGT00940000155177.b #33	ENSGT01030000234540.E #34	ENSGT00940000158367 #35	ENSGT00940000161722 #36	ENSGT00940000162718 #37
Mouse	MODERN SPECIES	12	Ptpn22 (ENSMUSG00000027843)	Bcl2l15 (ENSMUSG00000044165) #7	Ap4b1 (ENSMUSG00000032952) #8	Dclre1b (ENSMUSG00000027845) #10	Hipk1 (ENSMUSG00000008730) #11	Olfml3 (ENSMUSG00000027848) #13	Atg4a-ps (ENSMUSG00000087119)	Syt6 (ENSMUSG00000027849) #14	Trim33 (ENSMUSG00000033014) #15	Bcas2 (ENSMUSG00000005687) #16	Dennd2c (ENSMUSG00000007379) #17	Ampd1 (ENSMUSG00000070385) #18	Nras (ENSMUSG00000027852) #19	Csde1 (ENSMUSG00000068823) #20	Sike1 (ENSMUSG00000027854) #21	Nr1h5 (ENSMUSG00000048938) #22	Sycp1 (ENSMUSG00000027855) #23	Tshb (ENSMUSG00000027857) #24	Tspan2 (ENSMUSG00000027858) #25	Ngf (ENSMUSG00000027859) #26	Vangl1 (ENSMUSG00000027860) #27	Casq2 (ENSMUSG00000027861) #28	Nhlh2 (ENSMUSG00000048540) #29	Slc22a15 (ENSMUSG00000033147) #30	Mab21l3 (ENSMUSG00000044313) #31	Atp1a1 (ENSMUSG00000033161) #32	Igsf3 (ENSMUSG00000042035) #33	Cd2 (ENSMUSG00000027863) #34	Ptgfrn (ENSMUSG00000027864) #35	Cd101 (ENSMUSG00000086564) #36	Ttf2 (ENSMUSG00000033222) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096 #7	ENSGT00940000157025 #8	ENSGT00940000158175 #10	ENSGT00940000155356 #11	ENSGT00940000158083 #13	ENSGT00940000157665 #14	ENSGT00940000156361.B #15	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #17	ENSGT00950000183011.c.a.a #18	ENSGT00940000158947 #19	ENSGT00390000016950 #20	ENSGT00390000018003.a #21	ENSGT00940000163318 #22	ENSGT00390000003368.d #23	ENSGT00940000158152 #24	ENSGT00940000157504 #25	ENSGT00390000007725.A.b #26	ENSGT00390000012496.a #27	ENSGT00390000019377.b #28	ENSGT00940000162602 #29	ENSGT00940000160364 #30	ENSGT01050000244827.B #31	ENSGT00940000154840.b #32	ENSGT00940000155177.b #33	ENSGT01030000234540.E #34	ENSGT00940000158367 #35	ENSGT00940000161722 #36	ENSGT00940000162718 #37
Steppe mouse	MODERN SPECIES	3244	Ptpn22 (ENSMSIG00000011040)	Bcl2l15 (ENSMSIG00000011102) #7	Ap4b1 (ENSMSIG00000011131) #8	Dclre1b (ENSMSIG00000011393) #10	Hipk1 (ENSMSIG00000011445) #11	Olfml3 (ENSMSIG00000011637) #13	ENSMSIG00000011650	Syt6 (ENSMSIG00000011663) #14	Trim33 (ENSMSIG00000011742) #15	ENSMSIG00000011886 #16	Dennd2c (ENSMSIG00000011890) #17	Ampd1 (ENSMSIG00000011920) #18	ENSMSIG00000011973 #19	Csde1 (ENSMSIG00000011996) #20	Sike1 (ENSMSIG00000012694) #21	Nr1h5 (ENSMSIG00000012716) #22	Sycp1 (ENSMSIG00000012782) #23	Tshb (ENSMSIG00000012914) #24	Tspan2 (ENSMSIG00000012946) #25	ENSMSIG00000013003 #26	ENSMSIG00000013032
spretus	MODERN SPECIES	12	Ptpn22 (MGP_SPRETEiJ_G0026407)	Bcl2l15 (MGP_SPRETEiJ_G0026406) #7	MGP_SPRETEiJ_G0026405 #8	MGP_SPRETEiJ_G0026404 #8	Dclre1b (MGP_SPRETEiJ_G0026403) #10	Hipk1 (MGP_SPRETEiJ_G0026402) #11	Olfml3 (MGP_SPRETEiJ_G0026401) #13	Syt6 (MGP_SPRETEiJ_G0026400) #14	Trim33 (MGP_SPRETEiJ_G0026399) #15	Bcas2 (MGP_SPRETEiJ_G0026398) #16	Dennd2c (MGP_SPRETEiJ_G0026397) #17	Ampd1 (MGP_SPRETEiJ_G0026396) #18	Nras (MGP_SPRETEiJ_G0026395) #19	Csde1 (MGP_SPRETEiJ_G0026394) #20	Sike1 (MGP_SPRETEiJ_G0026393) #21	Nr1h5 (MGP_SPRETEiJ_G0026392) #22	Sycp1 (MGP_SPRETEiJ_G0026391) #23	Tshb (MGP_SPRETEiJ_G0026390) #24	Tspan2 (MGP_SPRETEiJ_G0026389) #25	Ngf (MGP_SPRETEiJ_G0026388) #26	Vangl1 (MGP_SPRETEiJ_G0026387) #27	Casq2 (MGP_SPRETEiJ_G0026386) #28	Nhlh2 (MGP_SPRETEiJ_G0026385) #29	Slc22a15 (MGP_SPRETEiJ_G0026384) #30	Mab21l3 (MGP_SPRETEiJ_G0026383) #31	Atp1a1 (MGP_SPRETEiJ_G0026382) #32	Igsf3 (MGP_SPRETEiJ_G0026381) #33	Cd2 (MGP_SPRETEiJ_G0026380) #34	Ptgfrn (MGP_SPRETEiJ_G0026379) #35	Cd101 (MGP_SPRETEiJ_G0026378) #36	Ttf2 (MGP_SPRETEiJ_G0026377) #37
Ryukyu mouse	MODERN SPECIES	12	Bcl2l15 (MGP_CAROLIEiJ_G0025457) #7	MGP_CAROLIEiJ_G0025456 #8	MGP_CAROLIEiJ_G0025455 #8	Dclre1b (MGP_CAROLIEiJ_G0025454) #10	Hipk1 (MGP_CAROLIEiJ_G0025453) #11	MGP_CAROLIEiJ_G0025452	Olfml3 (MGP_CAROLIEiJ_G0025451) #13	Syt6 (MGP_CAROLIEiJ_G0025450) #14	Trim33 (MGP_CAROLIEiJ_G0025449) #15	Bcas2 (MGP_CAROLIEiJ_G0025448) #16	Dennd2c (MGP_CAROLIEiJ_G0025447) #17	Ampd1 (MGP_CAROLIEiJ_G0025446) #18	Nras (MGP_CAROLIEiJ_G0025445) #19	Csde1 (MGP_CAROLIEiJ_G0025444) #20	Sike1 (MGP_CAROLIEiJ_G0025443) #21	Nr1h5 (MGP_CAROLIEiJ_G0025442) #22	MGP_CAROLIEiJ_G0025441 ##23	Tshb (MGP_CAROLIEiJ_G0025440) #24	Tspan2 (MGP_CAROLIEiJ_G0025439) #25	Ngf (MGP_CAROLIEiJ_G0025438) #26	Vangl1 (MGP_CAROLIEiJ_G0025437) #27	Casq2 (MGP_CAROLIEiJ_G0025436) #28	Nhlh2 (MGP_CAROLIEiJ_G0025435) #29	Slc22a15 (MGP_CAROLIEiJ_G0025434) #30	Mab21l3 (MGP_CAROLIEiJ_G0025433) #31	Atp1a1 (MGP_CAROLIEiJ_G0025432) #32	Igsf3 (MGP_CAROLIEiJ_G0025431) #33	Cd2 (MGP_CAROLIEiJ_G0025430) #34	Ptgfrn (MGP_CAROLIEiJ_G0025429) #35	Cd101 (MGP_CAROLIEiJ_G0025428) #36	Ttf2 (MGP_CAROLIEiJ_G0025427) #37
Rat	MODERN SPECIES	11	Bcl2l15 (ENSRNOG00000037149) #7	Ap4b1 (ENSRNOG00000019455) #8	Dclre1b (ENSRNOG00000019367) #10	Hipk1 (ENSRNOG00000019333) #11	Olfml3 (ENSRNOG00000019211) #13	Syt6 (ENSRNOG00000019163) #14	Rbis (ENSRNOG00000038902)	Trim33 (ENSRNOG00000018946) #15	ENSRNOG00000067127	Bcas2 (ENSRNOG00000018783) #16	Dennd2c (ENSRNOG00000018716) #17	Ampd1 (ENSRNOG00000018656) #18	Nras (ENSRNOG00000023079) #19	Csde1 (ENSRNOG00000061058) #20	Sike1 (ENSRNOG00000017502) #21	Nr1h5 (ENSRNOG00000023073) #22	Sycp1 (ENSRNOG00000016835) #23	Tshb (ENSRNOG00000016793) #24	Tspan2 (ENSRNOG00000023338) #25	Ngf (ENSRNOG00000016571) #26	Vangl1 (ENSRNOG00000016477) #27	Casq2 (ENSRNOG00000016243) #28	Nhlh2 (ENSRNOG00000054375) #29	Slc22a15 (ENSRNOG00000033051) #30	Mab21l3 (ENSRNOG00000016044) #31	Atp1a1 (ENSRNOG00000030019) #32	Igsf3 (ENSRNOG00000023851) #33	Cd2 (ENSRNOG00000015821) #34	ENSRNOG00000069649	Ptgfrn (ENSRNOG00000015655) #35	Cd101 (ENSRNOG00000037190) #36