Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000153887.B #8	ENSGT00940000157969 #9	ENSGT00940000155736.D	ENSGT00940000159557 #10	ENSGT01000000214804 #11	ENSGT00940000154656.pb #12	ENSGT00670000099420 #13	ENSGT00940000156844.a.w.a #14	ENSGT00940000155478.hb.a.a #15	ENSGT00950000182843.a.a.a.b.a.b #16	ENSGT00450000040324.a.a.b #17	ENSGT00530000063869.A #18	ENSGT00940000165230.a #19	ENSGT00950000183630 #20	ENSGT00940000160984 #21	ENSGT00940000166134 #22	ENSGT00940000156163.i.a #23	ENSGT00940000159690.a #24	ENSGT00890000139503 #27	ENSGT00940000157806.e #28	ENSGT00940000179201 #29	ENSGT00390000007999 #30	ENSGT00390000001742.b #31	ENSGT00940000158096.e	ENSGT00390000002453.a	ENSGT00940000166439 #32	ENSGT00940000158363 #33	ENSGT00390000002625 #34	ENSGT00940000159752.i #35	ENSGT00390000009030 #36	ENSGT00940000155420.a.a #37
Zebrafish	MODERN SPECIES	6	GPR4 (ENSDARG00000079479) #7	eml2 (ENSDARG00000008808) #8	ENSDARG00000025478 #9	CLIP3 (ENSDARG00000054456) #10	dharma (ENSDARG00000040955) #11	si:ch211-137a8.2 (ENSDARG00000068926) #12	ENSDARG00000078748 #13	zgc:162698 (ENSDARG00000074967) #14	capns1b (ENSDARG00000013804) #15	zgc:101731 (ENSDARG00000040965) #16	zgc:113149 (ENSDARG00000040966) #17	xaf1 (ENSDARG00000068939) #18	rap1gap2a (ENSDARG00000061551) #19	ENSDARG00000075092 #20	tsku (ENSDARG00000040815) #21	gucy2f (ENSDARG00000025504) #22	serpinh1b (ENSDARG00000019949) #23	GDPD5 (ENSDARG00000076962) #24	ENSDARG00000110949 #25	ENSDARG00000109743 #26	hspa13 (ENSDARG00000040984) #27	samsn1a (ENSDARG00000054543) #28	si:ch211-207n23.2 (ENSDARG00000097157) #29	NRIP1 (ENSDARG00000068965) #30	zgc:153372 (ENSDARG00000068967) #31	ENSDARG00000069066 #32	nlk2 (ENSDARG00000028793) #33	lyrm9 (ENSDARG00000075528) #34	nos2b (ENSDARG00000031976) #35	mrps23 (ENSDARG00000033973) #36	msi2b (ENSDARG00000032614) #37
Cyprininae	ANCESTRAL SPECIES	14	ENSGT00940000157969.sb #9	ENSGT00940000155736.D.l	ENSGT00940000157706.n	ENSGT00940000159557.a #10	ENSGT01000000214804.c #11	ENSGT00940000154656.pb.c.b #12	ENSGT00670000099420.a #13	ENSGT00940000156844.a.w.a.a #14	ENSGT00940000155478.hb.a.a.c #15	ENSGT00950000182843.a.a.a.b.a.b.a #16	ENSGT00450000040324.a.a.b.d #17	ENSGT00530000063869.A.d #18	ENSGT00940000165230.a.b #19	ENSGT00950000183630.b #20	ENSGT00940000160984.h #21	ENSGT00940000166134.a #22	ENSGT00940000156163.i.a.b #23	ENSGT00940000159690.a.a #24	ENSGT00890000139503.b #27	ENSGT00940000157806.e.a #28	ENSGT00390000007999.k.a #30	ENSGT00390000001742.b.a #31	ENSGT00940000158096.e.d	ENSGT00390000002453.a.a	ENSGT00940000166439.l #32	ENSGT00940000158363.j #33	ENSGT00940000158363.i #33	ENSGT00390000002625 #34	ENSGT00940000159752.i.b #35	ENSGT00390000009030 #36	ENSGT00940000155420.a.a.h #37
Cyprininae_a	ANCESTRAL SPECIES	28	ENSGT00940000157969.sb #9	ENSGT00940000155736.D.l	ENSGT00940000157706.n	ENSGT00940000159557.a #10	ENSGT01000000214804.c #11	ENSGT00940000154656.pb.c.b #12	ENSGT00670000099420.a #13	ENSGT00940000156844.a.w.a.a #14	ENSGT00940000155478.hb.a.a.c #15	ENSGT00950000182843.a.a.a.b.a.b.a #16	ENSGT00450000040324.a.a.b.d #17	ENSGT00530000063869.A.d #18	ENSGT00940000165230.a.b #19	ENSGT00950000183630.b #20	ENSGT00940000160984.h #21	ENSGT00940000166134.a #22	ENSGT00940000156163.i.a.b #23	ENSGT00940000159690.a.a #24	ENSGT00890000139503.b #27	ENSGT00940000157806.e.a #28	ENSGT00390000007999.k.a #30	ENSGT00390000001742.b.a #31	ENSGT00940000158096.e.d	ENSGT00390000002453.a.a	ENSGT00940000166439.l #32	ENSGT00940000158363.j #33	ENSGT00390000002625 #34	ENSGT00940000159752.i.b #35	ENSGT00940000159752.i.a #35	ENSGT00940000155420.a.a.g #37	ENSGT00390000001360.q.b.b
Golden-line barbel	MODERN SPECIES	118	eml2 (ENSSGRG00000038138) #8	ENSSGRG00000042417 #9	ENSSGRG00000042420	ENSSGRG00000042592	CLIP3 (ENSSGRG00000042593) #10	dharma (ENSSGRG00000042595) #11	si:ch211-137a8.2 (ENSSGRG00000042596) #12	zgc:162698 (ENSSGRG00000042597) #14	ENSSGRG00000042599 #13	capns1b (ENSSGRG00000042604) #15	zgc:101731 (ENSSGRG00000042610) #16	zgc:113149 (ENSSGRG00000042611) #17	xaf1 (ENSSGRG00000042612) #18	ENSSGRG00000042614 #20	tsku (ENSSGRG00000042615) #21	gucy2f (ENSSGRG00000042623) #22	serpinh1b (ENSSGRG00000043082) #23	GDPD5 (ENSSGRG00000043091) #24	hspa13 (ENSSGRG00000043121) #27	samsn1a (ENSSGRG00000043122) #28	NRIP1 (ENSSGRG00000043127) #30	zgc:153372 (ENSSGRG00000043129) #31	WSCD1 (ENSSGRG00000043132)
Common carp reference	MODERN SPECIES	39	ENSCCRG00000074921 #7	eml2 (ENSCCRG00000019929) #8	ENSCCRG00000076718 #9	ENSCCRG00000028235	ENSCCRG00000028240 #10	dharma (ENSCCRG00000023258) #11	si:ch211-137a8.2 (ENSCCRG00000075944) #12	ENSCCRG00000077374 #13	zgc:162698 (ENSCCRG00000071891) #14	zgc:101731 (ENSCCRG00000078887) #16	zgc:113149 (ENSCCRG00000072403) #17	xaf1 (ENSCCRG00000064550) #18	rap1gap2a (ENSCCRG00000023450) #19	ENSCCRG00000020267 #20	tsku (ENSCCRG00000063835) #21	gucy2f (ENSCCRG00000023369) #22	serpinh1b (ENSCCRG00000023068) #23	ENSCCRG00000052898 #24	hspa13 (ENSCCRG00000082266) #27	samsn1a (ENSCCRG00000039962) #28	ENSCCRG00000028270 #30	zgc:153372 (ENSCCRG00000028273) #31	ENSCCRG00000011790	ENSCCRG00000045422	ENSCCRG00000045885 #32	nlk2 (ENSCCRG00000002027) #33	nos2b (ENSCCRG00000001890) #35	msi2b (ENSCCRG00000032061) #37	akap1b (ENSCCRG00000028319)	ENSCCRG00000074513	ENSCCRG00000068838
Goldfish	MODERN SPECIES	34	eml2 (ENSCARG00000035095) #8	ENSCARG00000037366 #9	ENSCARG00000037461	CLIP3 (ENSCARG00000038026) #10	dharma (ENSCARG00000038074) #11	si:ch211-137a8.2 (ENSCARG00000038083) #12	ENSCARG00000038095 #13	zgc:162698 (ENSCARG00000038106) #14	capns1b (ENSCARG00000038199) #15	zgc:101731 (ENSCARG00000038303) #16	zgc:113149 (ENSCARG00000038376) #17	xaf1 (ENSCARG00000038389) #18	rap1gap2a (ENSCARG00000038445) #19	ENSCARG00000053280 #20	tsku (ENSCARG00000053374) #21	gucy2f (ENSCARG00000053464) #22	serpinh1b (ENSCARG00000054190) #23	GDPD5 (ENSCARG00000054226) #24	hspa13 (ENSCARG00000054356) #27	samsn1a (ENSCARG00000054369) #28	NRIP1 (ENSCARG00000054432) #30	zgc:153372 (ENSCARG00000054453) #31	WSCD1 (ENSCARG00000054577)	ENSCARG00000054590	ENSCARG00000054601 #32	ENSCARG00000054625	nlk2 (ENSCARG00000054638) #33	ENSCARG00000054791	nos2b (ENSCARG00000054887) #35	ENSCARG00000060236	msi2b (ENSCARG00000060280) #37
Cyprininae	ANCESTRAL SPECIES	249	ENSGT00940000153887.B.a #8	ENSGT00940000157969.tb #9	ENSGT00940000155736.D.k	ENSGT00940000159557.b #10	ENSGT01000000214804.d #11	ENSGT00940000154656.pb.c.a #12	ENSGT00670000099420.b #13	ENSGT00940000156844.a.w.a.b #14	ENSGT00940000155478.hb.a.a.d #15	ENSGT00950000182843.a.a.a.b.a.b.b #16	ENSGT00450000040324.a.a.b.c #17	ENSGT00530000063869.A.c #18	ENSGT00940000165230.a.a #19	ENSGT00950000183630.a #20	ENSGT00940000160984.g #21	ENSGT00940000166134.b #22	ENSGT00940000156163.i.a.a #23	ENSGT00940000159690.a.b #24	ENSGT00890000139503.a #27	ENSGT00940000157806.e.b #28	ENSGT00940000179201 #29	ENSGT00390000007999.k.b #30	ENSGT00390000001742.b.b #31
Goldfish	MODERN SPECIES	6	GPR4 (ENSCARG00000060772) #7	eml2 (ENSCARG00000059729) #8	GCGR (ENSCARG00000059600) #9	ENSCARG00000059551	CLIP3 (ENSCARG00000059293) #10	dharma (ENSCARG00000059255) #11	si:ch211-137a8.2 (ENSCARG00000059231) #12	ENSCARG00000059199 #13	zgc:162698 (ENSCARG00000059116) #14	capns1b (ENSCARG00000058949) #15	zgc:101731 (ENSCARG00000058881) #16	zgc:113149 (ENSCARG00000058815) #17	xaf1 (ENSCARG00000058797) #18	rap1gap2a (ENSCARG00000058565) #19	tsku (ENSCARG00000058538) #21	gucy2f (ENSCARG00000057699) #22	serpinh1b (ENSCARG00000057657) #23	GDPD5 (ENSCARG00000057604) #24	hspa13 (ENSCARG00000057577) #27	samsn1a (ENSCARG00000057563) #28	NRIP1 (ENSCARG00000057559) #30	zgc:153372 (ENSCARG00000057529) #31	vgll2a (ENSCARG00000057521)	rfx6 (ENSCARG00000057236)	igf2r (ENSCARG00000056672)	slc22a2 (ENSCARG00000056249)	plg (ENSCARG00000053849)	ENSCARG00000053659	ENSCARG00000053547	dph1 (ENSCARG00000053421)	ppm1da (ENSCARG00000053410)
Cyprininae_a	ANCESTRAL SPECIES	41	ENSGT00940000153887.B.a #8	ENSGT00940000157969.tb #9	ENSGT00940000155736.D.k	ENSGT00940000159557.b #10	ENSGT01000000214804.d #11	ENSGT00940000154656.pb.c.a #12	ENSGT00670000099420.b #13	ENSGT00940000156844.a.w.a.b #14	ENSGT00940000155478.hb.a.a.d #15	ENSGT00950000182843.a.a.a.b.a.b.b #16	ENSGT00450000040324.a.a.b.c #17	ENSGT00530000063869.A.c #18	ENSGT00940000165230.a.a #19	ENSGT00950000183630.a #20	ENSGT00940000160984.g #21	ENSGT00940000166134.b #22	ENSGT00940000156163.i.a.a #23	ENSGT00940000159690.a.b #24	ENSGT00890000139503.a #27	ENSGT00940000157806.e.b #28	ENSGT00940000179201 #29	ENSGT00390000007999.k.b #30	ENSGT00390000001742.b.b #31	ENSGT00940000158096.e.c	ENSGT00390000002453.a.b	ENSGT00940000166439.k #32	ENSGT00940000158363.i #33	ENSGT00390000009030 #36	ENSGT00940000155420.a.a.h #37	ENSGT00390000001360.q.b.a	ENSGT00940000181892
Common carp reference	MODERN SPECIES	26	ENSCCRG00000028184 #9	ENSCCRG00000071778	ENSCCRG00000028479	ENSCCRG00000078602 #10	dharma (ENSCCRG00000028349) #11	si:ch211-137a8.2 (ENSCCRG00000028355) #12	ENSCCRG00000076335 #13	zgc:162698 (ENSCCRG00000028394) #14	capns1b (ENSCCRG00000023390) #15	zgc:101731 (ENSCCRG00000023743) #16	zgc:113149 (ENSCCRG00000023402) #17	xaf1 (ENSCCRG00000023409) #18	rap1gap2a (ENSCCRG00000023073) #19	ENSCCRG00000023347 #20	tsku (ENSCCRG00000074676) #21	gucy2f (ENSCCRG00000020330) #22	serpinh1b (ENSCCRG00000024067) #23	hspa13 (ENSCCRG00000074795) #27	samsn1a (ENSCCRG00000021531) #28	si:ch211-207n23.2 (ENSCCRG00000068793) #29	ENSCCRG00000057215 #24	ENSCCRG00000028300 #30	zgc:153372 (ENSCCRG00000028305) #31	ENSCCRG00000049207	ENSCCRG00000022019	ENSCCRG00000045887	ENSCCRG00000045470 #32	nlk2 (ENSCCRG00000045476) #33	lyrm9 (ENSCCRG00000002540) #34	nos2b (ENSCCRG00000002048) #35	msi2b (ENSCCRG00000077313) #37
Golden-line barbel	MODERN SPECIES	5									capns1b (ENSSGRG00000022782) #15	zgc:101731 (ENSSGRG00000022780) #16	zgc:113149 (ENSSGRG00000022778) #17	xaf1 (ENSSGRG00000022777) #18	rap1gap2a (ENSSGRG00000022769) #19	ENSSGRG00000022767 #20	tsku (ENSSGRG00000022766) #21	gucy2f (ENSSGRG00000022493) #22	serpinh1b (ENSSGRG00000022486) #23	GDPD5 (ENSSGRG00000022234) #24	hspa13 (ENSSGRG00000022224) #27	samsn1a (ENSSGRG00000022222) #28	NRIP1 (ENSSGRG00000022216) #30	zgc:153372 (ENSSGRG00000022186) #31	WSCD1 (ENSSGRG00000022185)	ENSSGRG00000022183	ENSSGRG00000022182 #32	nlk2 (ENSSGRG00000022181) #33	nos2b (ENSSGRG00000022169) #35	mrps23 (ENSSGRG00000022165) #36	msi2b (ENSSGRG00000021552) #37	akap1b (ENSSGRG00000021314)	ENSSGRG00000021310