Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000153887.B #7	ENSGT00940000157969 #8	ENSGT00940000155736.D #9	ENSGT00940000159557 #10	ENSGT01000000214804 #11	ENSGT00940000154656.pb #12	ENSGT00670000099420 #13	ENSGT00940000156844.a.w.a #14	ENSGT00940000155478.hb.a.a #15	ENSGT00950000182843.a.a.a.b.a.b #16	ENSGT00450000040324.a.a.b #17	ENSGT00530000063869.A #18	ENSGT00940000165230.a #19	ENSGT00950000183630 #20	ENSGT00940000160984 #21	ENSGT00940000166134 #22	ENSGT00940000156163.i.a #23	ENSGT00940000159690.a #24	ENSGT00890000139503 #25	ENSGT00940000157806.e #26	ENSGT00940000179201 #27	ENSGT00390000007999 #28	ENSGT00390000001742.b #29	ENSGT00940000158096.e	ENSGT00390000002453.a	ENSGT00940000166439	ENSGT00940000158363	ENSGT00390000002625	ENSGT00940000159752.i	ENSGT00390000009030	ENSGT00940000155420.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	249	ENSGT00940000153887.B.a #7	ENSGT00940000157969.tb #8	ENSGT00940000155736.D.k #9	ENSGT00940000159557.b #10	ENSGT01000000214804.d #11	ENSGT00940000154656.pb.c.a #12	ENSGT00670000099420.b #13	ENSGT00940000156844.a.w.a.b #14	ENSGT00940000155478.hb.a.a.d #15	ENSGT00950000182843.a.a.a.b.a.b.b #16	ENSGT00450000040324.a.a.b.c #17	ENSGT00530000063869.A.c #18	ENSGT00940000165230.a.a #19	ENSGT00950000183630.a #20	ENSGT00940000160984.g #21	ENSGT00940000166134.b #22	ENSGT00940000156163.i.a.a #23	ENSGT00940000159690.a.b #24	ENSGT00890000139503.a #25	ENSGT00940000157806.e.b #26	ENSGT00940000179201 #27	ENSGT00390000007999.k.b #28	ENSGT00390000001742.b.b #29
Goldfish	MODERN SPECIES	6	GPR4 (ENSCARG00000060772)	eml2 (ENSCARG00000059729) #7	GCGR (ENSCARG00000059600) #8	ENSCARG00000059551 #9	CLIP3 (ENSCARG00000059293) #10	dharma (ENSCARG00000059255) #11	si:ch211-137a8.2 (ENSCARG00000059231) #12	ENSCARG00000059199 #13	zgc:162698 (ENSCARG00000059116) #14	capns1b (ENSCARG00000058949) #15	zgc:101731 (ENSCARG00000058881) #16	zgc:113149 (ENSCARG00000058815) #17	xaf1 (ENSCARG00000058797) #18	rap1gap2a (ENSCARG00000058565) #19	tsku (ENSCARG00000058538) #21	gucy2f (ENSCARG00000057699) #22	serpinh1b (ENSCARG00000057657) #23	GDPD5 (ENSCARG00000057604) #24	hspa13 (ENSCARG00000057577) #25	samsn1a (ENSCARG00000057563) #26	NRIP1 (ENSCARG00000057559) #28	zgc:153372 (ENSCARG00000057529) #29	vgll2a (ENSCARG00000057521)	rfx6 (ENSCARG00000057236)	igf2r (ENSCARG00000056672)	slc22a2 (ENSCARG00000056249)	plg (ENSCARG00000053849)	ENSCARG00000053659	ENSCARG00000053547	dph1 (ENSCARG00000053421)	ppm1da (ENSCARG00000053410)
Cyprininae_a	ANCESTRAL SPECIES	41	ENSGT00940000153887.B.a #7	ENSGT00940000157969.tb #8	ENSGT00940000155736.D.k #9	ENSGT00940000159557.b #10	ENSGT01000000214804.d #11	ENSGT00940000154656.pb.c.a #12	ENSGT00670000099420.b #13	ENSGT00940000156844.a.w.a.b #14	ENSGT00940000155478.hb.a.a.d #15	ENSGT00950000182843.a.a.a.b.a.b.b #16	ENSGT00450000040324.a.a.b.c #17	ENSGT00530000063869.A.c #18	ENSGT00940000165230.a.a #19	ENSGT00950000183630.a #20	ENSGT00940000160984.g #21	ENSGT00940000166134.b #22	ENSGT00940000156163.i.a.a #23	ENSGT00940000159690.a.b #24	ENSGT00890000139503.a #25	ENSGT00940000157806.e.b #26	ENSGT00940000179201 #27	ENSGT00390000007999.k.b #28	ENSGT00390000001742.b.b #29	ENSGT00940000158096.e.c	ENSGT00390000002453.a.b	ENSGT00940000166439.k	ENSGT00940000158363.i	ENSGT00390000009030	ENSGT00940000155420.a.a.h	ENSGT00390000001360.q.b.a	ENSGT00940000181892
Common carp reference	MODERN SPECIES	26	ENSCCRG00000028184 #8	ENSCCRG00000071778	ENSCCRG00000028479 #9	ENSCCRG00000078602 #10	dharma (ENSCCRG00000028349) #11	si:ch211-137a8.2 (ENSCCRG00000028355) #12	ENSCCRG00000076335 #13	zgc:162698 (ENSCCRG00000028394) #14	capns1b (ENSCCRG00000023390) #15	zgc:101731 (ENSCCRG00000023743) #16	zgc:113149 (ENSCCRG00000023402) #17	xaf1 (ENSCCRG00000023409) #18	rap1gap2a (ENSCCRG00000023073) #19	ENSCCRG00000023347 #20	tsku (ENSCCRG00000074676) #21	gucy2f (ENSCCRG00000020330) #22	serpinh1b (ENSCCRG00000024067) #23	hspa13 (ENSCCRG00000074795) #25	samsn1a (ENSCCRG00000021531) #26	si:ch211-207n23.2 (ENSCCRG00000068793) #27	ENSCCRG00000057215 #24	ENSCCRG00000028300 #28	zgc:153372 (ENSCCRG00000028305) #29	ENSCCRG00000049207	ENSCCRG00000022019	ENSCCRG00000045887	ENSCCRG00000045470	nlk2 (ENSCCRG00000045476)	lyrm9 (ENSCCRG00000002540)	nos2b (ENSCCRG00000002048)	msi2b (ENSCCRG00000077313)
Golden-line barbel	MODERN SPECIES	5									capns1b (ENSSGRG00000022782) #15	zgc:101731 (ENSSGRG00000022780) #16	zgc:113149 (ENSSGRG00000022778) #17	xaf1 (ENSSGRG00000022777) #18	rap1gap2a (ENSSGRG00000022769) #19	ENSSGRG00000022767 #20	tsku (ENSSGRG00000022766) #21	gucy2f (ENSSGRG00000022493) #22	serpinh1b (ENSSGRG00000022486) #23	GDPD5 (ENSSGRG00000022234) #24	hspa13 (ENSSGRG00000022224) #25	samsn1a (ENSSGRG00000022222) #26	NRIP1 (ENSSGRG00000022216) #28	zgc:153372 (ENSSGRG00000022186) #29	WSCD1 (ENSSGRG00000022185)	ENSSGRG00000022183	ENSSGRG00000022182	nlk2 (ENSSGRG00000022181)	nos2b (ENSSGRG00000022169)	mrps23 (ENSSGRG00000022165)	msi2b (ENSSGRG00000021552)	akap1b (ENSSGRG00000021314)	ENSSGRG00000021310
Cyprininae	ANCESTRAL SPECIES	14	ENSGT00940000157969.sb ##8	ENSGT00940000155736.D.l ##9	ENSGT00940000157706.n	ENSGT00940000159557.a ##10	ENSGT01000000214804.c ##11	ENSGT00940000154656.pb.c.b ##12	ENSGT00670000099420.a ##13	ENSGT00940000156844.a.w.a.a ##14	ENSGT00940000155478.hb.a.a.c ##15	ENSGT00950000182843.a.a.a.b.a.b.a ##16	ENSGT00450000040324.a.a.b.d ##17	ENSGT00530000063869.A.d ##18	ENSGT00940000165230.a.b ##19	ENSGT00950000183630.b ##20	ENSGT00940000160984.h ##21	ENSGT00940000166134.a ##22	ENSGT00940000156163.i.a.b ##23	ENSGT00940000159690.a.a ##24	ENSGT00890000139503.b ##25	ENSGT00940000157806.e.a ##26	ENSGT00390000007999.k.a ##28	ENSGT00390000001742.b.a ##29	ENSGT00940000158096.e.d	ENSGT00390000002453.a.a	ENSGT00940000166439.l	ENSGT00940000158363.j	ENSGT00940000158363.i	ENSGT00390000002625	ENSGT00940000159752.i.b	ENSGT00390000009030	ENSGT00940000155420.a.a.h
Cyprininae_a	ANCESTRAL SPECIES	28	ENSGT00940000157969.sb ##8	ENSGT00940000155736.D.l ##9	ENSGT00940000157706.n	ENSGT00940000159557.a ##10	ENSGT01000000214804.c ##11	ENSGT00940000154656.pb.c.b ##12	ENSGT00670000099420.a ##13	ENSGT00940000156844.a.w.a.a ##14	ENSGT00940000155478.hb.a.a.c ##15	ENSGT00950000182843.a.a.a.b.a.b.a ##16	ENSGT00450000040324.a.a.b.d ##17	ENSGT00530000063869.A.d ##18	ENSGT00940000165230.a.b ##19	ENSGT00950000183630.b ##20	ENSGT00940000160984.h ##21	ENSGT00940000166134.a ##22	ENSGT00940000156163.i.a.b ##23	ENSGT00940000159690.a.a ##24	ENSGT00890000139503.b ##25	ENSGT00940000157806.e.a ##26	ENSGT00390000007999.k.a ##28	ENSGT00390000001742.b.a ##29	ENSGT00940000158096.e.d	ENSGT00390000002453.a.a	ENSGT00940000166439.l	ENSGT00940000158363.j	ENSGT00390000002625	ENSGT00940000159752.i.b	ENSGT00940000159752.i.a	ENSGT00940000155420.a.a.g	ENSGT00390000001360.q.b.b
Golden-line barbel	MODERN SPECIES	118	eml2 (ENSSGRG00000038138) ##7	ENSSGRG00000042417 ##8	ENSSGRG00000042420 ##9	ENSSGRG00000042592	CLIP3 (ENSSGRG00000042593) ##10	dharma (ENSSGRG00000042595) ##11	si:ch211-137a8.2 (ENSSGRG00000042596) ##12	zgc:162698 (ENSSGRG00000042597) ##14	ENSSGRG00000042599 ##13	capns1b (ENSSGRG00000042604) ##15	zgc:101731 (ENSSGRG00000042610) ##16	zgc:113149 (ENSSGRG00000042611) ##17	xaf1 (ENSSGRG00000042612) ##18	ENSSGRG00000042614 ##20	tsku (ENSSGRG00000042615) ##21	gucy2f (ENSSGRG00000042623) ##22	serpinh1b (ENSSGRG00000043082) ##23	GDPD5 (ENSSGRG00000043091) ##24	hspa13 (ENSSGRG00000043121) ##25	samsn1a (ENSSGRG00000043122) ##26	NRIP1 (ENSSGRG00000043127) ##28	zgc:153372 (ENSSGRG00000043129) ##29	WSCD1 (ENSSGRG00000043132)
Common carp reference	MODERN SPECIES	39	ENSCCRG00000074921	eml2 (ENSCCRG00000019929) ##7	ENSCCRG00000076718 ##8	ENSCCRG00000028235 ##9	ENSCCRG00000028240 ##10	dharma (ENSCCRG00000023258) ##11	si:ch211-137a8.2 (ENSCCRG00000075944) ##12	ENSCCRG00000077374 ##13	zgc:162698 (ENSCCRG00000071891) ##14	zgc:101731 (ENSCCRG00000078887) ##16	zgc:113149 (ENSCCRG00000072403) ##17	xaf1 (ENSCCRG00000064550) ##18	rap1gap2a (ENSCCRG00000023450) ##19	ENSCCRG00000020267 ##20	tsku (ENSCCRG00000063835) ##21	gucy2f (ENSCCRG00000023369) ##22	serpinh1b (ENSCCRG00000023068) ##23	ENSCCRG00000052898 ##24	hspa13 (ENSCCRG00000082266) ##25	samsn1a (ENSCCRG00000039962) ##26	ENSCCRG00000028270 ##28	zgc:153372 (ENSCCRG00000028273) ##29	ENSCCRG00000011790	ENSCCRG00000045422	ENSCCRG00000045885	nlk2 (ENSCCRG00000002027)	nos2b (ENSCCRG00000001890)	msi2b (ENSCCRG00000032061)	akap1b (ENSCCRG00000028319)	ENSCCRG00000074513	ENSCCRG00000068838
Goldfish	MODERN SPECIES	34	eml2 (ENSCARG00000035095) ##7	ENSCARG00000037366 ##8	ENSCARG00000037461 ##9	CLIP3 (ENSCARG00000038026) ##10	dharma (ENSCARG00000038074) ##11	si:ch211-137a8.2 (ENSCARG00000038083) ##12	ENSCARG00000038095 ##13	zgc:162698 (ENSCARG00000038106) ##14	capns1b (ENSCARG00000038199) ##15	zgc:101731 (ENSCARG00000038303) ##16	zgc:113149 (ENSCARG00000038376) ##17	xaf1 (ENSCARG00000038389) ##18	rap1gap2a (ENSCARG00000038445) ##19	ENSCARG00000053280 ##20	tsku (ENSCARG00000053374) ##21	gucy2f (ENSCARG00000053464) ##22	serpinh1b (ENSCARG00000054190) ##23	GDPD5 (ENSCARG00000054226) ##24	hspa13 (ENSCARG00000054356) ##25	samsn1a (ENSCARG00000054369) ##26	NRIP1 (ENSCARG00000054432) ##28	zgc:153372 (ENSCARG00000054453) ##29	WSCD1 (ENSCARG00000054577)	ENSCARG00000054590	ENSCARG00000054601	ENSCARG00000054625	nlk2 (ENSCARG00000054638)	ENSCARG00000054791	nos2b (ENSCARG00000054887)	ENSCARG00000060236	msi2b (ENSCARG00000060280)
Zebrafish	MODERN SPECIES	6	GPR4 (ENSDARG00000079479)	eml2 (ENSDARG00000008808) #7	ENSDARG00000025478 #8	CLIP3 (ENSDARG00000054456) #10	dharma (ENSDARG00000040955) #11	si:ch211-137a8.2 (ENSDARG00000068926) #12	ENSDARG00000078748 #13	zgc:162698 (ENSDARG00000074967) #14	capns1b (ENSDARG00000013804) #15	zgc:101731 (ENSDARG00000040965) #16	zgc:113149 (ENSDARG00000040966) #17	xaf1 (ENSDARG00000068939) #18	rap1gap2a (ENSDARG00000061551) #19	ENSDARG00000075092 #20	tsku (ENSDARG00000040815) #21	gucy2f (ENSDARG00000025504) #22	serpinh1b (ENSDARG00000019949) #23	GDPD5 (ENSDARG00000076962) #24	ENSDARG00000110949	ENSDARG00000109743	hspa13 (ENSDARG00000040984) #25	samsn1a (ENSDARG00000054543) #26	si:ch211-207n23.2 (ENSDARG00000097157) #27	NRIP1 (ENSDARG00000068965) #28	zgc:153372 (ENSDARG00000068967) #29	ENSDARG00000069066	nlk2 (ENSDARG00000028793)	lyrm9 (ENSDARG00000075528)	nos2b (ENSDARG00000031976)	mrps23 (ENSDARG00000033973)	msi2b (ENSDARG00000032614)