Pseudocrenilabrinae	ANCESTRAL SPECIES	30	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #7	ENSGT00390000013820 #8	ENSGT01070000253816.a.a.b #9	ENSGT00940000153313.B #10	ENSGT00940000158106 #11	ENSGT00390000006601 #12	ENSGT00390000011709.gb #13	ENSGT00940000158556 #14	ENSGT00950000182827.A #15	ENSGT00940000164470.a #16	ENSGT00940000155202 #19	ENSGT00940000154517.mb #20	ENSGT00530000063528.B #21	ENSGT00940000166292 #22	ENSGT00940000166446 #23	ENSGT00990000203619.A.a #24	ENSGT01060000248589.C.g.a #25	ENSGT00940000155600.a.b #26	ENSGT00940000160782 #28	ENSGT00940000154443.f #29	ENSGT00390000005923 #30	ENSGT00940000155558 #31	ENSGT00940000165507 #32	ENSGT00940000156472.d #33	ENSGT00940000157043 #34	ENSGT00390000013151.a.a.b #35	ENSGT00940000160639.b.b #36	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.a.o.a.b.d #37	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.b.b.c.a.b.b.a.b ##37
Nile tilapia	MODERN SPECIES	7	idh1 (ENSONIG00000016369) #7	EPSTI1 (ENSONIG00000042475) #8	ENSONIG00000016368 #9	AKAP11 (ENSONIG00000016365) #10	DGKH (ENSONIG00000016354) #11	vwa8 (ENSONIG00000016347) #12	rgcc (ENSONIG00000016346) #13	f5 (ENSONIG00000016333) #14	slc35a5 (ENSONIG00000016329) #15	ccdc80 (ENSONIG00000016325) #16	ENSONIG00000038809 #17	ENSONIG00000034785 #18	KDM6A (ENSONIG00000016301) #19	fundc1 (ENSONIG00000016299) #20	efhc2 (ENSONIG00000016295) #21	ndp (ENSONIG00000036280) #22	mao (ENSONIG00000016280) #23	GPR82 (ENSONIG00000016277) #24	gpr34b (ENSONIG00000031105) #25	CASK (ENSONIG00000016268) #26	ENSONIG00000041312 #27	nyx (ENSONIG00000016267) #28	ddx3xa (ENSONIG00000016252) #29	nup35 (ENSONIG00000016251) #30	dnajc10 (ENSONIG00000016244) #31	frzb (ENSONIG00000016242) #32	dusp19a (ENSONIG00000036920) #33	ENSONIG00000016226 #34	sh3bp4 (ENSONIG00000016223) #35	arl4cb (ENSONIG00000036032) #36	ENSONIG00000029646 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	37	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #7	ENSGT00390000013820 #8	ENSGT01070000253816.a.a.b #9	ENSGT00940000153313.B #10	ENSGT00940000158106 #11	ENSGT00390000006601 #12	ENSGT00390000011709.gb #13	ENSGT00940000158556 #14	ENSGT00950000182827.A #15	ENSGT00940000164470.a #16	ENSGT00940000155202 #19	ENSGT00940000154517.mb #20	ENSGT00530000063528.B #21	ENSGT00940000166292 #22	ENSGT00940000166446.d.b #23	ENSGT00990000203619.A.a.e #24	ENSGT01060000248589.C.g.a #25	ENSGT00940000155600.a.b #26	ENSGT00940000160782 #28	ENSGT00940000154443.f #29	ENSGT00390000005923 #30	ENSGT00940000155558 #31	ENSGT00940000165507 #32	ENSGT00940000156472.d #33	ENSGT00940000157043 #34	ENSGT00390000013151.a.a.b #35	ENSGT00940000160639.b.b #36	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.a.o.a.a.a.a ##37	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.b.b.c.a.b.b.a.b ##37
Haplochromini	ANCESTRAL SPECIES	46	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #7	ENSGT00390000013820 #8	ENSGT01070000253816.a.a.b #9	ENSGT00940000153313.B #10	ENSGT00940000158106 #11	ENSGT00390000006601 #12	ENSGT01100000267124	ENSGT00940000158556 #14	ENSGT00950000182827.A #15	ENSGT00940000164470.a #16	ENSGT00940000155202 #19	ENSGT00940000154517.mb #20	ENSGT00530000063528.B #21	ENSGT00940000166292 #22	ENSGT00940000166446.d.a #23	ENSGT00990000203619.A.a.e #24	ENSGT01060000248589.C.g.a #25	ENSGT00940000155600.a.b #26	ENSGT00940000160782 #28	ENSGT00940000154443.f #29	ENSGT00390000005923 #30	ENSGT00940000155558 #31	ENSGT00940000165507 #32	ENSGT00940000156472.d #33	ENSGT00940000157043 #34	ENSGT00390000013151.a.a.b #35	ENSGT00940000160639.b.b #36	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.a.o.a.a.b ##37	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.a.o.a.b.d #37
Burton s mouthbrooder	MODERN SPECIES	548		idh1 (ENSHBUG00000014969) #7	ENSHBUG00000014948 #8	ENSHBUG00000000949 #9	AKAP11 (ENSHBUG00000014928) #10	DGKH (ENSHBUG00000014882) #11	vwa8 (ENSHBUG00000014695) #12	ENSHBUG00000014596	rgcc (ENSHBUG00000014585) #13	f5 (ENSHBUG00000000424) #14	slc35a5 (ENSHBUG00000014527) #15	ccdc80 (ENSHBUG00000014497) #16	KDM6A (ENSHBUG00000014387) #19	fundc1 (ENSHBUG00000012775) #20	efhc2 (ENSHBUG00000012733) #21	ENSHBUG00000012711 #22	ENSHBUG00000012699 #23
Haplochromini_A	ANCESTRAL SPECIES	51	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #7	ENSGT00390000013820 #8	ENSGT01070000253816.a.a.b #9	ENSGT00940000153313.B #10	ENSGT00940000158106 #11	ENSGT00390000006601 #12	ENSGT01100000267124	ENSGT00940000158556 #14	ENSGT00950000182827.A #15	ENSGT00940000164470.a #16	ENSGT00940000155202 #19	ENSGT00940000154517.mb #20	ENSGT00530000063528.B #21	ENSGT00940000166292 #22	ENSGT00940000166446.d.a #23	ENSGT00940000166446.d.b #23	ENSGT00940000155600.a.b #26	ENSGT00990000203619.A.a.e #24	ENSGT01060000248589.C.g.a #25	ENSGT00940000160782 #28	ENSGT00940000154443.f #29	ENSGT00390000005923 #30	ENSGT00940000155558 #31	ENSGT00940000165507 #32	ENSGT00940000156472.d #33	ENSGT00940000157043 #34	ENSGT00390000013151.a.a.b #35	ENSGT00940000160639.b.b #36	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.b.a.o.a.a.b ##37
Haplochromini_B	ANCESTRAL SPECIES	36	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #7	ENSGT00390000013820 #8	ENSGT01070000253816.a.a.b #9	ENSGT00940000153313.B #10	ENSGT00940000158106 #11	ENSGT00390000006601 #12	ENSGT00390000011709.gb #13	ENSGT00940000158556 #14	ENSGT00950000182827.A #15	ENSGT00940000164470.a #16	ENSGT00940000155202 #19	ENSGT00940000154517.mb #20	ENSGT00530000063528.B #21	ENSGT00940000166292 #22	ENSGT00940000166446.c.b.b #23	ENSGT00940000166446.c.a #23	ENSGT00940000162068.G.b.f.b.a	ENSGT00940000181718	ENSGT00990000203619.A.a.e #24	ENSGT01060000248589.C.g.a #25	ENSGT00940000155600.a.b #26	ENSGT00940000160782 #28	ENSGT00940000154443.f #29	ENSGT00390000005923 #30	ENSGT00940000155558 #31	ENSGT00940000165507 #32	ENSGT00940000156472.d #33	ENSGT00940000157043 #34	ENSGT00390000013151.a.a.b #35
Zebra mbuna	MODERN SPECIES	1098	rif1 (ENSMZEG00005020920)	idh1 (ENSMZEG00005020906) #7	EPSTI1 (ENSMZEG00005020903) #8	ENSMZEG00005020900	ENSMZEG00005020896 #9	AKAP11 (ENSMZEG00005020893) #10	DGKH (ENSMZEG00005020873) #11	vwa8 (ENSMZEG00005020838) #12	rgcc (ENSMZEG00005020831) #13	f5 (ENSMZEG00005020824) #14	slc35a5 (ENSMZEG00005020821) #15	ccdc80 (ENSMZEG00005020819) #16	KDM6A (ENSMZEG00005020798) #19	fundc1 (ENSMZEG00005020791) #20	efhc2 (ENSMZEG00005020787) #21	ENSMZEG00005020784 #22	mao (ENSMZEG00005020779) #23	ENSMZEG00005020776 #23	ENSMZEG00005020773	mao (ENSMZEG00005020763) #23	ENSMZEG00005020753	ENSMZEG00005020747	GPR82 (ENSMZEG00005020740) #24	gpr34b (ENSMZEG00005020735) #25	CASK (ENSMZEG00005020675) #26	nyx (ENSMZEG00005020648) #28	ddx3xa (ENSMZEG00005020636) #29	nup35 (ENSMZEG00005020619) #30	dnajc10 (ENSMZEG00005020612) #31	ENSMZEG00005020608	frzb (ENSMZEG00005020605) #32
Eastern happy	MODERN SPECIES	7	idh1 (ENSACLG00000010579) #7	idh1 (ENSACLG00000010612) ##7	ENSACLG00000010762 #8	ENSACLG00000010828 #9	AKAP11 (ENSACLG00000010835) #10	ENSACLG00000010849	DGKH (ENSACLG00000010870) #11	vwa8 (ENSACLG00000011362) #12	rgcc (ENSACLG00000011410) #13	f5 (ENSACLG00000011439) #14	slc35a5 (ENSACLG00000011451) #15	ccdc80 (ENSACLG00000011459) #16	KDM6A (ENSACLG00000011692) #19	fundc1 (ENSACLG00000011814) #20	efhc2 (ENSACLG00000011880) #21	ENSACLG00000011989 #22	mao (ENSACLG00000012011) #23	mao (ENSACLG00000012102) #23	ENSACLG00000012184	CASK (ENSACLG00000012243) #26	ENSACLG00000012837	ENSACLG00000012845 #25	ENSACLG00000012859	nyx (ENSACLG00000012864) #28	ENSACLG00000012867	ddx3xa (ENSACLG00000013517) #29	nup35 (ENSACLG00000013918) #30	dnajc10 (ENSACLG00000013993) #31	frzb (ENSACLG00000014035) #32	dusp19a (ENSACLG00000014079) #33	ENSACLG00000014097 #34
P. nyererei	MODERN SPECIES	455			idh1 (ENSPNYG00000011180) #7	ENSPNYG00000011205 #9	AKAP11 (ENSPNYG00000011223) #10	DGKH (ENSPNYG00000011257) #11	vwa8 (ENSPNYG00000011389) #12	ENSPNYG00000011660	rgcc (ENSPNYG00000011675) #13	f5 (ENSPNYG00000011696) #14	slc35a5 (ENSPNYG00000011741) #15	ccdc80 (ENSPNYG00000011778) #16	KDM6A (ENSPNYG00000011879) #19	fundc1 (ENSPNYG00000011956) #20	efhc2 (ENSPNYG00000011988) #21	ENSPNYG00000012013 #22	mao (ENSPNYG00000012032) #23	ENSPNYG00000012071 #23	CASK (ENSPNYG00000012117) #26	GPR82 (ENSPNYG00000012180) #24	gpr34b (ENSPNYG00000012218) #25	nyx (ENSPNYG00000012273) #28	ddx3xa (ENSPNYG00000012338) #29	nup35 (ENSPNYG00000012486) #30	dnajc10 (ENSPNYG00000012528) #31	frzb (ENSPNYG00000012577) #32	ENSPNYG00000012604 #34	sh3bp4 (ENSPNYG00000012662) #35	arl4cb (ENSPNYG00000012693) #36	ENSPNYG00000012724 ##37	ENSPNYG00000012739 ##37
Lyretail cichlid	MODERN SPECIES	439				idh1 (ENSNBRG00000019389) #7	ENSNBRG00000019415 #9	AKAP11 (ENSNBRG00000019442) #10	DGKH (ENSNBRG00000019470) #11	vwa8 (ENSNBRG00000019546) #12	rgcc (ENSNBRG00000019647) #13	f5 (ENSNBRG00000019729) #14	slc35a5 (ENSNBRG00000020014) #15	ccdc80 (ENSNBRG00000020040) #16	KDM6A (ENSNBRG00000020087) #19	fundc1 (ENSNBRG00000020128) #20	efhc2 (ENSNBRG00000020155) #21	ENSNBRG00000020193 #22	ENSNBRG00000020201 #23	ENSNBRG00000020219 #23	CASK (ENSNBRG00000020260) #26	gpr34b (ENSNBRG00000020373) #25	GPR82 (ENSNBRG00000020412) #24	nyx (ENSNBRG00000020429) #28	ddx3xa (ENSNBRG00000020448) #29	nup35 (ENSNBRG00000020466) #30	dnajc10 (ENSNBRG00000020512) #31	frzb (ENSNBRG00000020659) #32	dusp19a (ENSNBRG00000020666) #33	ENSNBRG00000020681 #34	sh3bp4 (ENSNBRG00000020723) #35	arl4cb (ENSNBRG00000020745) #36	ENSNBRG00000020785 ##37