Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Actinopterygii	ANCESTRAL SPECIES	972																ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23
Neopterygii	ANCESTRAL SPECIES	745																ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23
Osteoglossocephalai	ANCESTRAL SPECIES	27													ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00390000005869.a	ENSGT00730000111185.db.b ##31	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00870000136537	ENSGT00950000182940.b.a.b.a.b ##34
Clupeocephala	ANCESTRAL SPECIES	27	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.b ##7	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Acanthomorphata	ANCESTRAL SPECIES	34	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00940000154337.b ##7	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00940000154337.b ##7	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000176137 #10	ENSGT00940000154337.b ##7	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000178830	ENSGT00940000162790.a.v	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000154337.b ##7	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000176137 #10	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000176137 #10	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Channel bull blenny	MODERN SPECIES	7	rab5ab (ENSCGOG00000006398) #7	ENSCGOG00000006394 #8	si:dkey-82o10.4 (ENSCGOG00000006392) #9	ENSCGOG00000006391 #10	ENSCGOG00000006390 #11	PLCL2 (ENSCGOG00000006389) #12	ENSCGOG00000006379 #13	ENSCGOG00000006375 #14	ENSCGOG00000006365 #15	ENSCGOG00000006358 #16	ENSCGOG00000006356 #17	BRD2 (ENSCGOG00000006342) #18	ENSCGOG00000006190 #19	ENSCGOG00000006180 #20	pbx2 (ENSCGOG00000006093) #21	ENSCGOG00000006086 #22	dnase2 (ENSCGOG00000006074) #23	rgl2 (ENSCGOG00000006053) #24	PHF1 (ENSCGOG00000006000) #25	SYNGAP1 (ENSCGOG00000005965) #26	SYNGAP1 (ENSCGOG00000005962) #27	smg5 (ENSCGOG00000005537) #28	PAQR6 (ENSCGOG00000005522) #29	ntrk1 (ENSCGOG00000005507) #30	rbm8a (ENSCGOG00000005468) #31	otud7b (ENSCGOG00000005461) #32	mtmr11 (ENSCGOG00000005452) #33	SV2A (ENSCGOG00000005197) #34	bola1 (ENSCGOG00000005186) #35	nr2f5 (ENSCGOG00000005173) #36	ENSCGOG00000005170 #37
Pike perch	MODERN SPECIES	50	ENSSLUG00000011275	ENSSLUG00000011280	PLCL2 (ENSSLUG00000011282) #12	ENSSLUG00000011288 #13	ENSSLUG00000011291 #14	VMO1 (ENSSLUG00000011297) #15	ENSSLUG00000011306 #16	ENSSLUG00000011353 #17	BRD2 (ENSSLUG00000011362) #18	TAP1 (ENSSLUG00000011387) #19	ENSSLUG00000011438	ENSSLUG00000011444 #20	ENSSLUG00000011448 #20	ENSSLUG00000011452 ##20	pbx2 (ENSSLUG00000011463) #21	ENSSLUG00000011483 #22	dnase2 (ENSSLUG00000011488) #23	rgl2 (ENSSLUG00000011493) #24	PHF1 (ENSSLUG00000011514) #25	SYNGAP1 (ENSSLUG00000011626) #26	smg5 (ENSSLUG00000011694) #28	PAQR6 (ENSSLUG00000011725) #29	ntrk1 (ENSSLUG00000011736) #30	afp4 (ENSSLUG00000011739)	rbm8a (ENSSLUG00000011741) #31	otud7b (ENSSLUG00000011752) #32	mtmr11 (ENSSLUG00000011769) #33	SV2A (ENSSLUG00000011794) #34	bola1 (ENSSLUG00000011810) #35	nr2f5 (ENSSLUG00000011814) #36	ENSSLUG00000011820 #37
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00940000168259	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Lumpfish	MODERN SPECIES	17	ENSCLMG00005018960	nr1d2a (ENSCLMG00005018962)	ENSCLMG00005018963	ENSCLMG00005018967	rab5ab (ENSCLMG00005018968) #7	ENSCLMG00005018970	ENSCLMG00005018973 #11	PLCL2 (ENSCLMG00005018976) #12	ENSCLMG00005019020 #13	ENSCLMG00005019024 #14	BRD2 (ENSCLMG00005019025) #18	ENSCLMG00005019032 #19	ENSCLMG00005019042 #20	ENSCLMG00005019043 ##20	pbx2 (ENSCLMG00005019044) #21	ENSCLMG00005019047 #22	dnase2 (ENSCLMG00005019049) #23	rgl2 (ENSCLMG00005019051) #24	PHF1 (ENSCLMG00005019052) #25	SYNGAP1 (ENSCLMG00005019054) #26	smg5 (ENSCLMG00005019063) #28	ENSCLMG00005019073	PAQR6 (ENSCLMG00005019074) #29	ntrk1 (ENSCLMG00005019075) #30	rbm8a (ENSCLMG00005019076) #31	otud7b (ENSCLMG00005019077) #32	mtmr11 (ENSCLMG00005019078) #33	SV2A (ENSCLMG00005019080) #34	bola1 (ENSCLMG00005019432) #35	nr2f5 (ENSCLMG00005019433) #36	ENSCLMG00005019434
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000154337.a.a #7	ENSGT00940000174959 #8	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d.f #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00940000174959 #8	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d.f #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00940000170682
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005003322 #11	PLCL2 (ENSLCRG00005003317) #12	ENSLCRG00005003098 #13	ENSLCRG00005003090 #14	VMO1 (ENSLCRG00005003089) #15	ENSLCRG00005003086	ENSLCRG00005003077	BRD2 (ENSLCRG00005003074) #18	ENSLCRG00005002961 #19	ENSLCRG00005002952	ENSLCRG00005002949 #20	ENSLCRG00005002946	ENSLCRG00005002943 #20	ENSLCRG00005002941 ##20	pbx2 (ENSLCRG00005002936) #21	ENSLCRG00005002934 #22	dnase2 (ENSLCRG00005002931) #23	rgl2 (ENSLCRG00005002916) #24	ENSLCRG00005002911	PHF1 (ENSLCRG00005002907) #25	SYNGAP1 (ENSLCRG00005002796) #26	smg5 (ENSLCRG00005002757) #28	PAQR6 (ENSLCRG00005002751) #29	ntrk1 (ENSLCRG00005002543) #30	afp4 (ENSLCRG00005002533)	rbm8a (ENSLCRG00005002524) #31	otud7b (ENSLCRG00005002517) #32	mtmr11 (ENSLCRG00005002489) #33	SV2A (ENSLCRG00005001350) #34	bola1 (ENSLCRG00005001335) #35	nr2f5 (ENSLCRG00005001332) #36
Tetraodontidae	ANCESTRAL SPECIES	84															ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172.e #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37	ENSGT00940000165143.a.a
Tetraodon	MODERN SPECIES	23	RIMS2 (ENSTNIG00000008214)	dcaf13 (ENSTNIG00000008215)	slc25a32b (ENSTNIG00000008216)	CTHRC1 (ENSTNIG00000008217)	fzd6 (ENSTNIG00000008218)	klhl32 (ENSTNIG00000008219)	mms22l (ENSTNIG00000008220)	ENSTNIG00000008221	ENSTNIG00000002829	FAXC (ENSTNIG00000007011)	coq3 (ENSTNIG00000007012)	pnisr (ENSTNIG00000014274)	usp45 (ENSTNIG00000014275)	fbxl4 (ENSTNIG00000003966)	pbx2 (ENSTNIG00000003902) #21	ENSTNIG00000003901 #22	dnase2 (ENSTNIG00000003900) #23	rgl2 (ENSTNIG00000003899) #24	PHF1 (ENSTNIG00000002628) #25	prdm13 (ENSTNIG00000006867)	me1 (ENSTNIG00000006868)	rbm8a (ENSTNIG00000006869) #31	ENSTNIG00000006870 #32	prss35 (ENSTNIG00000001140)	ENSTNIG00000006871	DOP1A (ENSTNIG00000006872)	ube3d (ENSTNIG00000000135)	IBTK (ENSTNIG00000006874)	TENT5A (ENSTNIG00000006875)	otud7b (ENSTNIG00000006876) #32	ENSTNIG00000006877 #32
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Carangaria	ANCESTRAL SPECIES	1	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Barramundi perch	MODERN SPECIES	104	efhb (ENSLCAG00010000738)	si:dkey-82o10.4 (ENSLCAG00010000743) #9	ENSLCAG00010000751 #11	PLCL2 (ENSLCAG00010000764) #12	ENSLCAG00010000791 #13	ENSLCAG00010000841 #14	ENSLCAG00010000845 #15	ENSLCAG00010000929 #16	ENSLCAG00010001085 #17	BRD2 (ENSLCAG00010001091) #18	ENSLCAG00010001097 #19	ENSLCAG00010001101	ENSLCAG00010001107 #20	ENSLCAG00010001113 ##20	pbx2 (ENSLCAG00010001121) #21	ENSLCAG00010001127 #22	dnase2 (ENSLCAG00010001131) #23	rgl2 (ENSLCAG00010001143) #24	ENSLCAG00010001179 #25	SYNGAP1 (ENSLCAG00010001229) #26	smg5 (ENSLCAG00010001297) #28	PAQR6 (ENSLCAG00010001320) #29	ntrk1 (ENSLCAG00010001325) #30	afp4 (ENSLCAG00010001346)	rbm8a (ENSLCAG00010001353) #31	otud7b (ENSLCAG00010001374) #32	mtmr11 (ENSLCAG00010001385) #33	SV2A (ENSLCAG00010001399) #34	bola1 (ENSLCAG00010001414) #35	nr2f5 (ENSLCAG00010001419) #36	ENSLCAG00010001426 #37
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000168259	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Turbot	MODERN SPECIES	7	ENSSMAG00000013833 ##7	ENSSMAG00000013816	si:dkey-82o10.4 (ENSSMAG00000013812) #9	ENSSMAG00000013769 #11	ENSSMAG00000013746 #12	ENSSMAG00000013730 #13	ENSSMAG00000013717 #14	ENSSMAG00000034565 #15	ENSSMAG00000013677 #16	ENSSMAG00000013629 #18	ENSSMAG00000013604 #19	ENSSMAG00000028548 #20	ENSSMAG00000031338 #20	ENSSMAG00000013387 ##20	pbx2 (ENSSMAG00000013369) #21	ENSSMAG00000013359 #22	dnase2 (ENSSMAG00000013349) #23	rgl2 (ENSSMAG00000013255) #24	ENSSMAG00000013225 #25	ENSSMAG00000013154 #26	smg5 (ENSSMAG00000013059) #28	ENSSMAG00000013042 #29	ntrk1 (ENSSMAG00000013025) #30	afp4 (ENSSMAG00000032387)	rbm8a (ENSSMAG00000012998) #31	otud7b (ENSSMAG00000012942) #32	mtmr11 (ENSSMAG00000012874) #33	SV2A (ENSSMAG00000012812) #34	bola1 (ENSSMAG00000012800) #35	nr2f5 (ENSSMAG00000012789) #36	ENSSMAG00000031037 #37
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Zig-zag eel	MODERN SPECIES	7	nr1d2a (ENSMAMG00000011205)	ube2e2 (ENSMAMG00000011190)	ENSMAMG00000011172	rab5ab (ENSMAMG00000011160) #7	ENSMAMG00000011147 #8	ENSMAMG00000011041 #11	ENSMAMG00000010974 #12	ENSMAMG00000010962 #13	ENSMAMG00000010947 #14	ENSMAMG00000010935 #15	ENSMAMG00000010912 #18	ENSMAMG00000010898 #19	ENSMAMG00000026570 #20	ENSMAMG00000028340 ##20	pbx2 (ENSMAMG00000010824) #21	ENSMAMG00000010815 #22	dnase2 (ENSMAMG00000010809) #23	rgl2 (ENSMAMG00000010763) #24	ENSMAMG00000010747 #25	ENSMAMG00000010739 #26	smg5 (ENSMAMG00000010683) #28	ENSMAMG00000010623 #29	ntrk1 (ENSMAMG00000010588) #30	afp4 (ENSMAMG00000010579)	rbm8a (ENSMAMG00000010565) #31	otud7b (ENSMAMG00000028073) #32	mtmr11 (ENSMAMG00000010471) #33	SV2A (ENSMAMG00000010430) #34	bola1 (ENSMAMG00000010420) #35	nr2f5 (ENSMAMG00000010413) #36	ENSMAMG00000027679 #37
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000165358	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Climbing perch	MODERN SPECIES	7	ENSATEG00000004685	ube2e2 (ENSATEG00000004735)	ZNF385D (ENSATEG00000004760)	rab5ab (ENSATEG00000004767) #7	efhb (ENSATEG00000004785)	ENSATEG00000004828 #11	ENSATEG00000004933 #12	ENSATEG00000004974 #13	ENSATEG00000005007 #14	ENSATEG00000005015 #15	ENSATEG00000005034 #18	ENSATEG00000005039 #19	ENSATEG00000005138 #20	ENSATEG00000005151 ##20	pbx2 (ENSATEG00000005174) #21	ENSATEG00000005209 #22	dnase2 (ENSATEG00000005230) #23	rgl2 (ENSATEG00000005242) #24	ENSATEG00000005287 #25	ENSATEG00000005290 #26	smg5 (ENSATEG00000005348) #28	ENSATEG00000005447 #29	ntrk1 (ENSATEG00000005463) #30	ENSATEG00000025342	afp4 (ENSATEG00000028682)	rbm8a (ENSATEG00000005630) #31	otud7b (ENSATEG00000005677) #32	mtmr11 (ENSATEG00000005761) #33	SV2A (ENSATEG00000005856) #34	bola1 (ENSATEG00000005915) #35	nr2f5 (ENSATEG00000005947) #36
Siamese fighting fish	MODERN SPECIES	7	nr1d2a (ENSBSLG00000017637)	UBE2E2 (ENSBSLG00000017484)	ENSBSLG00000017356	ENSBSLG00000017283 ##7	efhb (ENSBSLG00000017251)	ENSBSLG00000017220 #11	PLCL2 (ENSBSLG00000017186) #12	ENSBSLG00000017164	ENSBSLG00000017112 #14	ENSBSLG00000017090 #15	BRD2 (ENSBSLG00000016725) #18	ENSBSLG00000015596 #19	ENSBSLG00000015571 #20	her7 (ENSBSLG00000015560) ##20	pbx2 (ENSBSLG00000015536) #21	ENSBSLG00000015526 #22	dnase2 (ENSBSLG00000015520) #23	rgl2 (ENSBSLG00000015431) #24	PHF1 (ENSBSLG00000015396) #25	SYNGAP1 (ENSBSLG00000015193) #26	smg5 (ENSBSLG00000014276) #28	PAQR6 (ENSBSLG00000014162) #29	ntrk1 (ENSBSLG00000014067) #30	ENSBSLG00000013786	rbm8a (ENSBSLG00000013774) #31	otud7b (ENSBSLG00000013769) #32	mtmr11 (ENSBSLG00000013750) #33	SV2A (ENSBSLG00000013319) #34	bola1 (ENSBSLG00000019240) #35	nr2f5 (ENSBSLG00000019234) #36	ENSBSLG00000019220 #37
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000178830	ENSGT00940000162790.a.v	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00940000168259	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100	ENSGT00510000051675.g.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.a	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100	ENSGT00510000051675.g.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.a	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00700000104815.g ##20	ENSGT01000000218930.a.a	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00940000170682
Indian medaka	MODERN SPECIES	33	lmna (ENSOMEG00000020229)	ENSOMEG00000020254	ENSOMEG00000020271	rab25b (ENSOMEG00000020350)	lamtor2 (ENSOMEG00000020398)	ENSOMEG00000020446	ENSOMEG00000020470	ENSOMEG00000020508	BRD2 (ENSOMEG00000020558) #18	TAP1 (ENSOMEG00000020635) #19	ENSOMEG00000020685	ENSOMEG00000000548 ##20	ENSOMEG00000020710	ENSOMEG00000020725	pbx2 (ENSOMEG00000020750) #21	ENSOMEG00000020764 #22	dnase2 (ENSOMEG00000020788) #23	rgl2 (ENSOMEG00000020962) #24	ENSOMEG00000021059 #25	ENSOMEG00000021082	SYNGAP1 (ENSOMEG00000021229) #26	smg5 (ENSOMEG00000021330) #28	PAQR6 (ENSOMEG00000021407) #29	ntrk1 (ENSOMEG00000021500) #30	rbm8a (ENSOMEG00000021533) #31	ENSOMEG00000021547	otud7b (ENSOMEG00000021584) #32	mtmr11 (ENSOMEG00000021623) #33	SV2A (ENSOMEG00000021649) #34	bola1 (ENSOMEG00000021673) #35	nr2f5 (ENSOMEG00000021700) #36
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00940000168259	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.b ##7	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015009177	ZNF385D (ENSNFUG00015009166)	RAB5AB (ENSNFUG00015009144) ##7	EFHB (ENSNFUG00015009106)	ENSNFUG00015009014 #11	PLCL2 (ENSNFUG00015005490) #12	ENSNFUG00015005483 #13	nod2 (ENSNFUG00015005451)	RFTN1 (ENSNFUG00015005432) #14	VMO1 (ENSNFUG00015005415) #15	BRD2B (ENSNFUG00015005395) #18	ENSNFUG00015005368 #19	ENSNFUG00015005354	ENSNFUG00015005346 ##20	PBX2 (ENSNFUG00015005329) #21	ENSNFUG00015005318 #22	DNASE2 (ENSNFUG00015005306) #23	rgl2 (ENSNFUG00015005264) #24	ENSNFUG00015005229	ENSNFUG00015005224	SYNGAP1 (ENSNFUG00015005147) #26	SMG5 (ENSNFUG00015005066) #28	PAQR6 (ENSNFUG00015005029) #29	ENSNFUG00015005025	NTRK1 (ENSNFUG00015005005) #30	afp4 (ENSNFUG00015004984)	rbm8a (ENSNFUG00015004925) #31	ENSNFUG00015004912	OTUD7B (ENSNFUG00015004893) #32	MTMR11 (ENSNFUG00015004821) #33	SV2A (ENSNFUG00015004677) #34
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00390000004886	ENSGT00940000154865	ENSGT00510000051337	ENSGT00390000006173	ENSGT00390000015701	ENSGT00940000156408	ENSGT01050000244937.b	ENSGT00510000048688	ENSGT01030000234566.e.a	ENSGT00530000063829.A	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT00410000029015	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
NAME_4	ANCESTRAL SPECIES	46	ENSGT00940000167628	ENSGT00390000004886	ENSGT00510000051337	ENSGT00390000006173	ENSGT00390000015701	ENSGT00940000156408	ENSGT01050000244937.b	ENSGT00510000048688	ENSGT01030000234566.e.a	ENSGT00530000063829.A	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT00410000029015	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Sheepshead minnow	MODERN SPECIES	112	ENSCVAG00000019821	snrnp48 (ENSCVAG00000019829)	ENSCVAG00000019835	CFAP418 (ENSCVAG00000019844)	wdr73 (ENSCVAG00000000804)	plekhf2 (ENSCVAG00000000512)	ENSCVAG00000019891	NDUFAF6 (ENSCVAG00000019945)	nagpa (ENSCVAG00000019962)	tp53inp1 (ENSCVAG00000019968)	ccne2 (ENSCVAG00000020085)	ENSCVAG00000020177	ENSCVAG00000020188	her7 (ENSCVAG00000020203) ##20	pbx2 (ENSCVAG00000020230) #21	ENSCVAG00000020252 #22	dnase2 (ENSCVAG00000020259) #23	rgl2 (ENSCVAG00000020358) #24	ENSCVAG00000020400 #25	SYNGAP1 (ENSCVAG00000020573) #26	smg5 (ENSCVAG00000000529) #28	PAQR6 (ENSCVAG00000020682) #29	ntrk1 (ENSCVAG00000020716) #30	afp4 (ENSCVAG00000000531)	rbm8a (ENSCVAG00000020734) #31	otud7b (ENSCVAG00000020810) #32
Mummichog	MODERN SPECIES	2372							ENSFHEG00000014473	NDUFAF6 (ENSFHEG00000014461)	nagpa (ENSFHEG00000014318)	tp53inp1 (ENSFHEG00000014301)	ccne2 (ENSFHEG00000014289)	ENSFHEG00000014275	ENSFHEG00000014194	ENSFHEG00000014182	pbx2 (ENSFHEG00000014176) #21	ENSFHEG00000014156 #22	dnase2 (ENSFHEG00000014128) #23	rgl2 (ENSFHEG00000014121) #24	ENSFHEG00000014107 #25	SYNGAP1 (ENSFHEG00000014005) #26	smg5 (ENSFHEG00000013939) #28	PAQR6 (ENSFHEG00000013671) #29	ntrk1 (ENSFHEG00000013636) #30	afp4 (ENSFHEG00000013547)	rbm8a (ENSFHEG00000013538) #31	otud7b (ENSFHEG00000013521) #32	ENSFHEG00000013502	mtmr11 (ENSFHEG00000013488) #33	ENSFHEG00000013439	SV2A (ENSFHEG00000013433) #34	bola1 (ENSFHEG00000013395) #35
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000154865	ENSGT00510000051337	ENSGT00390000006173	ENSGT00390000015701	ENSGT00940000156408	ENSGT01050000244937.b	ENSGT00510000048688	ENSGT01030000234566.e.a	ENSGT00530000063829.A	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.b.b.a.a.b.a.a.a	ENSGT00410000029015	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Platyfish	MODERN SPECIES	17	CFAP418 (ENSXMAG00000020843)	wdr73 (ENSXMAG00000013578)	plekhf2 (ENSXMAG00000019540)	ENSXMAG00000013577	ENSXMAG00000025928	ENSXMAG00000027167	NDUFAF6 (ENSXMAG00000013575)	nagpa (ENSXMAG00000013573)	tp53inp1 (ENSXMAG00000027011)	ccne2 (ENSXMAG00000026399)	ENSXMAG00000013569	ENSXMAG00000025850	ENSXMAG00000023341	her7 (ENSXMAG00000013567) ##20	pbx2 (ENSXMAG00000013564) #21	ENSXMAG00000024404 #22	dnase2 (ENSXMAG00000013560) #23	rgl2 (ENSXMAG00000013549) #24	ENSXMAG00000021298	ENSXMAG00000013539 #25	ENSXMAG00000029645	SYNGAP1 (ENSXMAG00000013527) #26	smg5 (ENSXMAG00000013499) #28	PAQR6 (ENSXMAG00000013484) #29	ntrk1 (ENSXMAG00000013468) #30	afp4 (ENSXMAG00000013467)	rbm8a (ENSXMAG00000013463) #31	otud7b (ENSXMAG00000013458) #32	mtmr11 (ENSXMAG00000013453) #33	SV2A (ENSXMAG00000013444) #34	bola1 (ENSXMAG00000019538) #35
Poecilia	ANCESTRAL SPECIES		ENSGT00940000154865	ENSGT00510000051337	ENSGT00390000006173	ENSGT00390000015701	ENSGT00940000156408	ENSGT01050000244937.b	ENSGT00510000048688	ENSGT01030000234566.e.a	ENSGT00530000063829.A	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.b.b.a.a.b.a.a.a	ENSGT00410000029015	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
NAME_6	ANCESTRAL SPECIES	236	ENSGT00510000051337	ENSGT00390000006173	ENSGT00390000015701	ENSGT00940000156408	ENSGT01050000244937.b	ENSGT00510000048688	ENSGT01030000234566.e.a	ENSGT00530000063829.A	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.b.b.a.a.b.a.a.a	ENSGT00410000029015	ENSGT00700000104815.g ##20	ENSGT00390000009571.a.b.a.b.h.a.a	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25
Amazon molly	MODERN SPECIES	560	CFAP418 (ENSPFOG00000003198)	wdr73 (ENSPFOG00000003117)	plekhf2 (ENSPFOG00000020404)	ENSPFOG00000020403	ENSPFOG00000024809	NDUFAF6 (ENSPFOG00000002960)	nagpa (ENSPFOG00000002774)	tp53inp1 (ENSPFOG00000024411)	ccne2 (ENSPFOG00000002509)	ENSPFOG00000002238	ENSPFOG00000002223	ENSPFOG00000002215	her7 (ENSPFOG00000002211) ##20	ENSPFOG00000002124	pbx2 (ENSPFOG00000001961) #21	ENSPFOG00000022246 #22	dnase2 (ENSPFOG00000001815) #23	rgl2 (ENSPFOG00000001521) #24	ENSPFOG00000001289 #25
Sailfin molly	MODERN SPECIES	1720													her7 (ENSPLAG00000012914) ##20	ENSPLAG00000012949	pbx2 (ENSPLAG00000012997) #21	ENSPLAG00000013044 #22	dnase2 (ENSPLAG00000000302) #23	rgl2 (ENSPLAG00000013138) #24	ENSPLAG00000013173 #25
Guppy	MODERN SPECIES	446	cd83 (ENSPREG00000018492)	ENSPREG00000018485	wdr73 (ENSPREG00000018456)	plekhf2 (ENSPREG00000018446)	ENSPREG00000018429	ENSPREG00000018423	NDUFAF6 (ENSPREG00000018411)	nagpa (ENSPREG00000018391)	tp53inp1 (ENSPREG00000018379)	ccne2 (ENSPREG00000018362)	ENSPREG00000018320	ENSPREG00000018251	ENSPREG00000018243	her7 (ENSPREG00000018230) ##20	pbx2 (ENSPREG00000018201) #21	ENSPREG00000018192 #22	dnase2 (ENSPREG00000018170) #23	rgl2 (ENSPREG00000018131) #24	ENSPREG00000018097 #25	SYNGAP1 (ENSPREG00000017857) #26	smg5 (ENSPREG00000017713) #28	PAQR6 (ENSPREG00000017648) #29	ntrk1 (ENSPREG00000017606) #30	afp4 (ENSPREG00000017587)	rbm8a (ENSPREG00000017572) #31	otud7b (ENSPREG00000017548) #32	mtmr11 (ENSPREG00000017533) #33	SV2A (ENSPREG00000017505) #34	bola1 (ENSPREG00000017489) #35	nr2f5 (ENSPREG00000017478) #36	ENSPREG00000017462
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000178830	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000178830	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000178830	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.h #20	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000023537 #11	ENSAPEG00000023503	PLCL2 (ENSAPEG00000023490) #12	ENSAPEG00000023435 #13	ENSAPEG00000023425 #14	ENSAPEG00000023414 #14	ENSAPEG00000023398 #15	ENSAPEG00000023356	ENSAPEG00000023344	BRD2 (ENSAPEG00000023337) #18	ENSAPEG00000023306 #19	ENSAPEG00000023290	ENSAPEG00000023287 #20	her7 (ENSAPEG00000023260) ##20	pbx2 (ENSAPEG00000023234) #21	ENSAPEG00000023227 #22	dnase2 (ENSAPEG00000023208) #23	rgl2 (ENSAPEG00000023146) #24	PHF1 (ENSAPEG00000023049) #25	SYNGAP1 (ENSAPEG00000023032) #26	smg5 (ENSAPEG00000022949) #28	PAQR6 (ENSAPEG00000022918) #29	ntrk1 (ENSAPEG00000022877) #30	afp4 (ENSAPEG00000022859)	rbm8a (ENSAPEG00000022847) #31	otud7b (ENSAPEG00000022828) #32	mtmr11 (ENSAPEG00000022797) #33	ENSAPEG00000022792	SV2A (ENSAPEG00000022757) #34	bola1 (ENSAPEG00000022655) #35	nr2f5 (ENSAPEG00000022639) #36
Spiny chromis	MODERN SPECIES	374					ENSAPOG00000020221 #14	ENSAPOG00000020209 #15	ENSAPOG00000020201 #16	ENSAPOG00000020176	ENSAPOG00000020159 #17	BRD2 (ENSAPOG00000020121) #18	TAP1 (ENSAPOG00000020061) #19	ENSAPOG00000020051	ENSAPOG00000019991 #20	her7 (ENSAPOG00000019986) ##20	pbx2 (ENSAPOG00000000569) #21	ENSAPOG00000019942 #22	dnase2 (ENSAPOG00000001018) #23	rgl2 (ENSAPOG00000019885) #24	PHF1 (ENSAPOG00000019739) #25	SYNGAP1 (ENSAPOG00000019729) #26	smg5 (ENSAPOG00000019690) #28	PAQR6 (ENSAPOG00000019568) #29
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Midas cichlid	MODERN SPECIES	299	rab5ab (ENSACIG00000002327) #7	ENSACIG00000002302 #8	si:dkey-82o10.4 (ENSACIG00000002250) #9	ENSACIG00000002221 #11	PLCL2 (ENSACIG00000002211) #12	ENSACIG00000002198	pcca (ENSACIG00000002187)	ENSACIG00000002160 #14	VMO1 (ENSACIG00000002148) #15	BRD2 (ENSACIG00000001934) #18	ENSACIG00000001709 #19	ENSACIG00000001675	ENSACIG00000001660 ##20	her7 (ENSACIG00000001647) ##20	pbx2 (ENSACIG00000001624) #21	ENSACIG00000001606 #22	dnase2 (ENSACIG00000001586) #23	rgl2 (ENSACIG00000001540) #24	PHF1 (ENSACIG00000001474) #25	SYNGAP1 (ENSACIG00000001419) #26	smg5 (ENSACIG00000001353) #28	PAQR6 (ENSACIG00000001299) #29	ntrk1 (ENSACIG00000001254) #30	ENSACIG00000001247
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g.d ##20	ENSGT00700000104815.g.c ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Lyretail cichlid	MODERN SPECIES	373	rab5ab (ENSNBRG00000003511) #7	ENSNBRG00000003533 #8	si:dkey-82o10.4 (ENSNBRG00000003573) #9	ENSNBRG00000003602 #11	PLCL2 (ENSNBRG00000003643) #12	ENSNBRG00000003663 #13	ENSNBRG00000003691 #14	VMO1 (ENSNBRG00000003710) #15	BRD2 (ENSNBRG00000003729) #18	brd2b (ENSNBRG00000003756) #18	ENSNBRG00000003793 #19	ENSNBRG00000004026	ENSNBRG00000004056 ##20	pbx2 (ENSNBRG00000004069) #21	ENSNBRG00000004087	ENSNBRG00000004106 #22	dnase2 (ENSNBRG00000004163) #23	rgl2 (ENSNBRG00000004175) #24	PHF1 (ENSNBRG00000004222) #25	ENSNBRG00000004266 #26	smg5 (ENSNBRG00000004332) #28	PAQR6 (ENSNBRG00000004397) #29	ntrk1 (ENSNBRG00000004429) #30	rbm8a (ENSNBRG00000004541) #31	otud7b (ENSNBRG00000004572) #32	mtmr11 (ENSNBRG00000004613) #33	SV2A (ENSNBRG00000004684) #34	bola1 (ENSNBRG00000004852) #35	ENSNBRG00000004874	rpz (ENSNBRG00000004907)	rpz6 (ENSNBRG00000004913)
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g.d ##20	ENSGT00700000104815.g.c ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
Burton s mouthbrooder	MODERN SPECIES	327	ENSHBUG00000007847	rab5ab (ENSHBUG00000007871) #7	si:dkey-82o10.4 (ENSHBUG00000007878) #9	ENSHBUG00000007886 #8	ENSHBUG00000007961 #11	PLCL2 (ENSHBUG00000008003) #12	ENSHBUG00000008025	ENSHBUG00000008036 #14	VMO1 (ENSHBUG00000008051) #15	BRD2 (ENSHBUG00000008131) #18	ENSHBUG00000008157 #19	ENSHBUG00000008197	ENSHBUG00000008212 ##20	her7 (ENSHBUG00000008231) ##20	pbx2 (ENSHBUG00000008278) #21	ENSHBUG00000001065 #22	dnase2 (ENSHBUG00000008304) #23	rgl2 (ENSHBUG00000008416) #24	ENSHBUG00000008432 #25	SYNGAP1 (ENSHBUG00000008524) #26	smg5 (ENSHBUG00000008654) #28	PAQR6 (ENSHBUG00000000217) #29	ntrk1 (ENSHBUG00000008795) #30	rbm8a (ENSHBUG00000008827) #31	otud7b (ENSHBUG00000008841) #32	mtmr11 (ENSHBUG00000008921) #33	ENSHBUG00000008944	SV2A (ENSHBUG00000009012) #34	bola1 (ENSHBUG00000009032) #35	nr2f5 (ENSHBUG00000009044) #36	ENSHBUG00000009063 #37
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g.d ##20	ENSGT00700000104815.g.c ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00510000049239.b.b #37
P. nyererei	MODERN SPECIES	433	rab5ab (ENSPNYG00000012596) #7	efhb (ENSPNYG00000012619)	si:dkey-82o10.4 (ENSPNYG00000012649) #9	ENSPNYG00000012678 #11	PLCL2 (ENSPNYG00000012715) #12	ENSPNYG00000012749	ENSPNYG00000012774 #14	VMO1 (ENSPNYG00000012791) #15	BRD2 (ENSPNYG00000012798) #18	brd2b (ENSPNYG00000012810) #18	ENSPNYG00000012832 #19	ENSPNYG00000012855	her7 (ENSPNYG00000012880) ##20	her7 (ENSPNYG00000012890) ##20	pbx2 (ENSPNYG00000012906) #21	ENSPNYG00000012935 #22	dnase2 (ENSPNYG00000012955) #23	rgl2 (ENSPNYG00000012979) #24	PHF1 (ENSPNYG00000013037) #25	SYNGAP1 (ENSPNYG00000013123) #26	smg5 (ENSPNYG00000013397) #28	PAQR6 (ENSPNYG00000013500) #29	ntrk1 (ENSPNYG00000013517) #30	rbm8a (ENSPNYG00000013564) #31	otud7b (ENSPNYG00000013585) #32	mtmr11 (ENSPNYG00000013609) #33	ENSPNYG00000013644	SV2A (ENSPNYG00000013663) #34	bola1 (ENSPNYG00000013704) #35	nr2f5 (ENSPNYG00000013716) #36	ENSPNYG00000013734 #37
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00700000104815.g.d ##20	ENSGT00700000104815.g.c ##20	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00940000170682
Eastern happy	MODERN SPECIES	2	efhb (ENSACLG00000007516)	si:dkey-82o10.4 (ENSACLG00000007548) #9	ENSACLG00000007560 #11	ENSACLG00000008402	PLCL2 (ENSACLG00000008409) #12	ENSACLG00000008435 #13	ENSACLG00000008793 #14	VMO1 (ENSACLG00000008801) #15	BRD2 (ENSACLG00000008805) #18	ENSACLG00000008829 #19	ENSACLG00000008848	ENSACLG00000008868 ##20	ENSACLG00000008872	her7 (ENSACLG00000008874) ##20	pbx2 (ENSACLG00000008881) #21	ENSACLG00000008899 #22	dnase2 (ENSACLG00000008911) #23	rgl2 (ENSACLG00000008918) #24	PHF1 (ENSACLG00000008933) #25	SYNGAP1 (ENSACLG00000008961) #26	smg5 (ENSACLG00000009311) #28	PAQR6 (ENSACLG00000009375) #29	ntrk1 (ENSACLG00000009587) #30	rbm8a (ENSACLG00000009627) #31	otud7b (ENSACLG00000009638) #32	mtmr11 (ENSACLG00000009660) #33	ENSACLG00000009694	SV2A (ENSACLG00000009697) #34	bola1 (ENSACLG00000009710) #35	nr2f5 (ENSACLG00000009719) #36	ENSACLG00000009726
Zebra mbuna	MODERN SPECIES	1093	ZNF385D (ENSMZEG00005016295)	rab5ab (ENSMZEG00005016286) #7	efhb (ENSMZEG00005016283)	si:dkey-82o10.4 (ENSMZEG00005016280) #9	ENSMZEG00005016275 #11	PLCL2 (ENSMZEG00005016252) #12	ENSMZEG00005016241 #13	ENSMZEG00005016237 #14	VMO1 (ENSMZEG00005016227) #15	BRD2 (ENSMZEG00005016215) #18	ENSMZEG00005016207 #19	ENSMZEG00005016203	her7 (ENSMZEG00005016198) ##20	her7 (ENSMZEG00005016194) ##20	pbx2 (ENSMZEG00005016188) #21	ENSMZEG00005016184 #22	dnase2 (ENSMZEG00005016176) #23	rgl2 (ENSMZEG00005016157) #24	PHF1 (ENSMZEG00005016144) #25	SYNGAP1 (ENSMZEG00005015849) #26	smg5 (ENSMZEG00005015815) #28	ENSMZEG00005015805	ENSMZEG00005015798	ENSMZEG00005015774	NEK10 (ENSMZEG00005015752)	septin7b (ENSMZEG00005015670)	ENSMZEG00005015655	ENSMZEG00005015638	ENSMZEG00005015610	mios (ENSMZEG00005015599)	ENSMZEG00005015581
Tiger tail seahorse	MODERN SPECIES	100	ENSHCOG00000010747	SLC39A1 (ENSHCOG00000010724)	CREB3L4 (ENSHCOG00000010700)	ENSHCOG00000010671	ENSHCOG00000010569	ENSHCOG00000010556	ENSHCOG00000010501	ENSHCOG00000010479	syt11b (ENSHCOG00000010472)	tmem242 (ENSHCOG00000010460)	zgc:153896 (ENSHCOG00000010453)	mrps12 (ENSHCOG00000010444)	ENSHCOG00000010439	ENSHCOG00000010428	pbx2 (ENSHCOG00000010421) #21	ENSHCOG00000010368 #22	dnase2 (ENSHCOG00000010351) #23	rgl2 (ENSHCOG00000010340) #24	PHF1 (ENSHCOG00000010317) #25	SYNGAP1 (ENSHCOG00000010278) #26	smg5 (ENSHCOG00000010229) #28	PAQR6 (ENSHCOG00000010171) #29	ntrk1 (ENSHCOG00000010136) #30	rbm8a (ENSHCOG00000010122) #31	otud7b (ENSHCOG00000010099) #32	mtmr11 (ENSHCOG00000010048) #33	SV2A (ENSHCOG00000009997) #34	bola1 (ENSHCOG00000009965) #35	nr2f5 (ENSHCOG00000009946) #36	ENSHCOG00000009932	rpz (ENSHCOG00000009921)
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005005294 #11	PLCL2 (ENSMMDG00005005290) #12	ENSMMDG00005003507 #13	ENSMMDG00005003479 #14	ENSMMDG00005003475 #15	ENSMMDG00005003470 #17	ENSMMDG00005003466	ENSMMDG00005003451 #15	VMO1 (ENSMMDG00005003449) #15	ENSMMDG00005003447 #18	ENSMMDG00005003376 #19	her7 (ENSMMDG00005003368) #20	ENSMMDG00005003366 #20	ENSMMDG00005003364 #20	pbx2 (ENSMMDG00005003360) #21	ENSMMDG00005003352 #22	dnase2 (ENSMMDG00005003346) #23	rgl2 (ENSMMDG00005003337) #24	ENSMMDG00005003308 #25	SYNGAP1 (ENSMMDG00005003258) #26	smg5 (ENSMMDG00005003221) #28	PAQR6 (ENSMMDG00005003200) #29	ntrk1 (ENSMMDG00005003192) #30	afp4 (ENSMMDG00005003187)	rbm8a (ENSMMDG00005003183) #31	otud7b (ENSMMDG00005003178) #32	mtmr11 (ENSMMDG00005003169) #33	SV2A (ENSMMDG00005003162) #34	bola1 (ENSMMDG00005003158) #35	nr2f5 (ENSMMDG00005003152) #36	ENSMMDG00005003131 #37
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000154222.d.a	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313 #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00940000163828.a.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	27	ENSGT00940000155168.a.a.e	ENSGT00940000160242.a.d	ENSGT00390000017863	ENSGT00940000154337.a.a.a.b #7	ENSGT00940000168259	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b.g #12	ENSGT00940000156439.d.d #13	ENSGT00530000063609.b.w.i #14	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f #18	ENSGT00940000159023 #19	ENSGT00980000198621.a	ENSGT00940000166527.f #21	ENSGT00940000175842	ENSGT00940000166061.b.a #22	ENSGT00390000002634.a.e.e #23	ENSGT00940000167370.e #24	ENSGT00950000183180.a.b.j.b #25	ENSGT00940000154566.f #28	ENSGT00940000160567.t #29	ENSGT00940000159412.d #30	ENSGT00760000119652.e.a	ENSGT00730000111185.eb.d #31	ENSGT00940000159172.h #32	ENSGT00940000160276.g #33	ENSGT00950000182940.b.a.b.a.a.d #34	ENSGT00510000048165.e #35	ENSGT00940000165753.d #36	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b #7	ENSGT00940000168259	ENSGT00390000008096.C.a.c #11	ENSGT00940000155660.b.g #12	ENSGT00940000156439.d.d #13	ENSGT00530000063609.b.w.i #14	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f #18	ENSGT00940000159023.z.a.a #19	ENSGT00980000198621.a	ENSGT00940000166527.f #21	ENSGT00940000166061.b.a #22	ENSGT00390000002634.a.e.e #23	ENSGT00940000167370.e #24	ENSGT00950000183180.a.b.i.b.a #25	ENSGT00940000158438.n.f #26	ENSGT00940000154566.f #28	ENSGT00940000160567.t #29	ENSGT00940000159412.d #30	ENSGT00760000119652.e.a	ENSGT00730000111185.eb.d #31	ENSGT00940000159172.h #32	ENSGT00940000160276.g #33	ENSGT00950000182940.b.a.b.a.a.d #34	ENSGT00510000048165.e #35	ENSGT00940000165753.d #36	ENSGT00940000163828.a.b.b.f
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000165550.a.b.a.b.e	ENSGT00940000165358	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b #7	ENSGT00390000008096.C.a.c #11	ENSGT00940000155660.b.g #12	ENSGT00940000156439.d.d #13	ENSGT00530000063609.b.w.i #14	ENSGT01060000253451	ENSGT00940000153385.b.a.b.fd.b.f #18	ENSGT00940000159023.z.a.a #19	ENSGT00940000166527.f #21	ENSGT00940000166061.b.a #22	ENSGT00390000002634.a.e.e #23	ENSGT00940000167370.e #24	ENSGT00950000183180.a.b.i.b.a #25	ENSGT00940000158438.n.f #26	ENSGT00940000154566.f #28	ENSGT00940000160567.t #29	ENSGT00940000159412.d #30	ENSGT00760000119652.e.a	ENSGT00730000111185.eb.d #31	ENSGT00940000159172.h #32	ENSGT00940000160276.g #33	ENSGT00950000182940.b.a.b.a.a.d #34	ENSGT00510000048165.e #35	ENSGT00940000165753.d #36	ENSGT00940000163828.a.b.b.f
River trout	MODERN SPECIES	22	ENSSTUG00000035391	nr1d2a (ENSSTUG00000035430)	ZNF385D (ENSSTUG00000035505)	ENSSTUG00000035511	rab5ab (ENSSTUG00000035514) #7	ENSSTUG00000035530	ENSSTUG00000035539 #11	PLCL2 (ENSSTUG00000035580) #12	ENSSTUG00000035590 #13	ENSSTUG00000035603 #14	ENSSTUG00000035613	ENSSTUG00000035621	ENSSTUG00000035626 #18	TAP1 (ENSSTUG00000035704) #19	pbx2 (ENSSTUG00000036084) #21	ENSSTUG00000036100 #22	dnase2 (ENSSTUG00000036111) #23	rgl2 (ENSSTUG00000036123) #24	PHF1 (ENSSTUG00000036207) #25	SYNGAP1 (ENSSTUG00000036422) #26	smg5 (ENSSTUG00000036549) #28	PAQR6 (ENSSTUG00000037418) #29	ntrk1 (ENSSTUG00000037432) #30	ENSSTUG00000037480	rbm8a (ENSSTUG00000037492) #31	ENSSTUG00000037511	otud7b (ENSSTUG00000037519) #32	mtmr11 (ENSSTUG00000037559) #33	SV2A (ENSSTUG00000037605) #34	bola1 (ENSSTUG00000038021) #35	nr2f5 (ENSSTUG00000038025) #36
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000005025	ube2e2 (ENSSSAG00000110907)	ZNF385D (ENSSSAG00000120560)	ENSSSAG00000005083	rab5a (ENSSSAG00000005090) #7	ENSSSAG00000005140 #11	ENSSSAG00000005169 #12	ENSSSAG00000093757 #13	ENSSSAG00000109004 #14	ENSSSAG00000103460	ENSSSAG00000005215 #18	ENSSSAG00000097841	tap1 (ENSSSAG00000005352) #19	ENSSSAG00000005840	pbx2 (ENSSSAG00000073977) #21	ENSSSAG00000119738 #22	dnase2 (ENSSSAG00000073967) #23	rgl2 (ENSSSAG00000005857) #24	ENSSSAG00000005949 #25	ENSSSAG00000006576 #26	smg5 (ENSSSAG00000006730) #28	ENSSSAG00000100845 #29	ntrk1 (ENSSSAG00000007032) #30	ENSSSAG00000007048	rbm8a (ENSSSAG00000007055) #31	otud7b (ENSSSAG00000109418) #32	mtmr11 (ENSSSAG00000007191) #33	SV2A (ENSSSAG00000072877) #34	bola1 (ENSSSAG00000008156) #35	nr2f5 (ENSSSAG00000083916) #36	ENSSSAG00000008165
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00940000155168.a.a.e	ENSGT00940000165358.j	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b #7	ENSGT00940000168259	ENSGT00390000008096.C.a.c #11	ENSGT00940000155660.b.g #12	ENSGT00940000156439.d.d #13	ENSGT00530000063609.b.w.i #14	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f #18	ENSGT00940000159023.z.a.a #19	ENSGT00980000198621.a	ENSGT00940000166527.f #21	ENSGT00940000166061.b.a #22	ENSGT00940000175842	ENSGT00390000002634.a.e.e #23	ENSGT00940000167370.e #24	ENSGT00950000183180.a.b.i.b.a #25	ENSGT00940000158438.n.f #26	ENSGT00940000154566.f #28	ENSGT00940000160567.t #29	ENSGT00940000159412.d #30	ENSGT00760000119652.e.a	ENSGT00730000111185.eb.d #31	ENSGT00940000159172.h #32	ENSGT00940000160276.g #33	ENSGT00950000182940.b.a.b.a.a.d #34	ENSGT00510000048165.e #35	ENSGT00940000165753.d #36
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00940000161037	ENSGT00940000156196.a.b	ENSGT00940000155168.a.a.e	ENSGT00940000160242.a.d	ENSGT00390000017863.c	ENSGT00940000154337.a.a.a.b #7	ENSGT00390000008096.C.a.c #11	ENSGT00940000155660.b.g #12	ENSGT00940000156439.d.d #13	ENSGT00530000063609.b.w.i #14	ENSGT00940000178830	ENSGT00940000153385.b.a.b.fd.b.f #18	ENSGT00940000159023.z.a.a #19	ENSGT00980000198621.a	ENSGT00940000166527.f.a #21	ENSGT00940000166061.b.a #22	ENSGT00940000166527.f.b #21	ENSGT00390000002634.a.e.e #23	ENSGT00940000167370.e #24	ENSGT00950000183180.a.b.i.b.a #25	ENSGT00940000158438.n.f #26	ENSGT00940000154566.f #28	ENSGT00940000160567.t #29	ENSGT00940000159412.d #30	ENSGT00760000119652.e.a	ENSGT00730000111185.eb.d #31	ENSGT00940000159172.h #32	ENSGT00940000160276.g #33	ENSGT00950000182940.b.a.b.a.a.d #34	ENSGT00510000048165.e #35	ENSGT00940000165753.d #36
Chinook salmon	MODERN SPECIES	15	NEK10 (ENSOTSG00005016788)	ENSOTSG00005016781	nr1d2a (ENSOTSG00005016764)	ZNF385D (ENSOTSG00005016761)	ENSOTSG00005016760	rab5ab (ENSOTSG00005016759) #7	ENSOTSG00005016757 #11	PLCL2 (ENSOTSG00005016753) #12	ENSOTSG00005016752 #13	ENSOTSG00005016751 #14	ENSOTSG00005016746 #17	ENSOTSG00005016740 #18	TAP1 (ENSOTSG00005016202) #19	ENSOTSG00005016201	pbx2 (ENSOTSG00005016195) #21	ENSOTSG00005016193 #22	ENSOTSG00005016191	dnase2 (ENSOTSG00005016188) #23	rgl2 (ENSOTSG00005016183) #24	ENSOTSG00005016164 #25	SYNGAP1 (ENSOTSG00005016140) #26	smg5 (ENSOTSG00005016088) #28	PAQR6 (ENSOTSG00005016084) #29	ntrk1 (ENSOTSG00005016082) #30	ENSOTSG00005016078	rbm8a (ENSOTSG00005016077) #31	otud7b (ENSOTSG00005016074) #32	mtmr11 (ENSOTSG00005016072) #33	bola1 (ENSOTSG00005016067) #35	nr2f5 (ENSOTSG00005016066) #36	ENSOTSG00005016032
Huchen	MODERN SPECIES	597								ENSHHUG00000035883 #14	ENSHHUG00000035892 #15	ENSHHUG00000035904	ENSHHUG00000035911 #17	ENSHHUG00000035919 #18	ENSHHUG00000035969 #19	ENSHHUG00000036135	pbx2 (ENSHHUG00000036137) #21	ENSHHUG00000036142 #22	dnase2 (ENSHHUG00000036145) #23	rgl2 (ENSHHUG00000036159) #24	ENSHHUG00000036212 #25	smg5 (ENSHHUG00000036250) #28	PAQR6 (ENSHHUG00000036265) #29	ntrk1 (ENSHHUG00000036280) #30	ENSHHUG00000036298	rbm8a (ENSHHUG00000036306) #31	otud7b (ENSHHUG00000036354) #32	mtmr11 (ENSHHUG00000036360) #33	SV2A (ENSHHUG00000036379) #34	bola1 (ENSHHUG00000036546) #35	nr2f5 (ENSHHUG00000036548) #36
Salmoninae	ANCESTRAL SPECIES	45	ENSGT00940000165358	ENSGT00940000160242.a.c	ENSGT00940000154337.a.a.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00940000155660.b.h #12	ENSGT00940000156439.d.c #13	ENSGT00530000063609.b.w.j #14	ENSGT00390000009313.p.a #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b.e #18	ENSGT00980000198621.b	ENSGT00940000166527.e #21	ENSGT00940000166061.b.b #22	ENSGT00390000002634.a.e.f #23	ENSGT00940000167370.f #24	ENSGT00950000183180.a.b.i #25	ENSGT00940000158438.n #26	ENSGT00940000154566.e #28	ENSGT00940000160567.s #29	ENSGT00940000159412.c #30	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c #31	ENSGT00940000159172.g #32	ENSGT00940000160276.h #33	ENSGT00950000182940.b.a.b.a.a.c #34	ENSGT00510000048165.f #35	ENSGT00940000165753.c #36	ENSGT00940000163828.a.b.b.e
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00390000008096.C.a.d #11	ENSGT00940000155660.b.h #12	ENSGT00940000156439.d.c #13	ENSGT00530000063609.b.w.j #14	ENSGT00390000009313.p.a #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b.e #18	ENSGT00940000159023.z.a.b #19	ENSGT00940000159023.z.b #19	ENSGT00980000198621.b	ENSGT00940000166527.e #21	ENSGT00940000166061.b.b #22	ENSGT00390000002634.a.e.f #23	ENSGT00940000167370.f #24	ENSGT00950000183180.a.b.i.a #25	ENSGT00940000158438.n.e #26	ENSGT00940000154566.e #28	ENSGT00940000160567.s #29	ENSGT00940000159412.c #30	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c #31	ENSGT00940000159172.g #32	ENSGT00940000160276.h #33	ENSGT00950000182940.b.a.b.a.a.c #34	ENSGT00510000048165.f #35	ENSGT00940000165753.c #36	ENSGT00940000163828.a.b.b.e
Salmo	ANCESTRAL SPECIES	32	ENSGT00390000017863.d	ENSGT00940000154337.a.a.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a.d #11	ENSGT00940000155660.b.h #12	ENSGT00940000156439.d.c #13	ENSGT00530000063609.b.w.j.b #14	ENSGT00530000063609.b.w.j.a #14	ENSGT00390000009313.o #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b.e #18	ENSGT00980000198621.b	ENSGT00940000166527.e #21	ENSGT00940000166061.b.b #22	ENSGT00390000002634.a.e.f #23	ENSGT00940000167370.f #24	ENSGT00950000183180.a.b.j.a #25	ENSGT00940000158438.n.e #26	ENSGT00940000154566.e #28	ENSGT00940000160567.s #29	ENSGT00940000159412.c #30	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c #31	ENSGT00940000159172.g #32	ENSGT00940000160276.h #33	ENSGT00950000182940.b.a.b.a.a.c #34	ENSGT00510000048165.f #35	ENSGT00940000165753.c #36	ENSGT00940000163828.a.b.b.e
River trout	MODERN SPECIES	30	ZNF385D (ENSSTUG00000043093)	ENSSTUG00000043045	rab5ab (ENSSTUG00000042995) #7	efhb (ENSSTUG00000042934)	si:dkey-82o10.4 (ENSSTUG00000042900) #9	ENSSTUG00000042827 #11	ENSSTUG00000042800 #12	ENSSTUG00000042765 #13	ENSSTUG00000042745 #14	ENSSTUG00000042724 #14	ENSSTUG00000042709 #15	ENSSTUG00000042635 #16	ENSSTUG00000042604 #17	BRD2 (ENSSTUG00000042401) #18	pbx2 (ENSSTUG00000042384) #21	ENSSTUG00000042362 #22	dnase2 (ENSSTUG00000042334) #23	rgl2 (ENSSTUG00000042149) #24	ENSSTUG00000041867 #25	SYNGAP1 (ENSSTUG00000039408) #26	smg5 (ENSSTUG00000039078) #28	PAQR6 (ENSSTUG00000039052) #29	ntrk1 (ENSSTUG00000039023) #30	ENSSTUG00000039005	rbm8a (ENSSTUG00000038984) #31	otud7b (ENSSTUG00000038974) #32	mtmr11 (ENSSTUG00000038901) #33	SV2A (ENSSTUG00000038754) #34	bola1 (ENSSTUG00000038739) #35	nr2f5 (ENSSTUG00000038732) #36	ENSSTUG00000038687
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00390000008096.C.a.d #11	ENSGT00940000155660.b.h #12	ENSGT00940000156439.d.c #13	ENSGT00530000063609.b.w.j #14	ENSGT00390000009313.p.a #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b.e #18	ENSGT00940000159023.z.a.b #19	ENSGT00940000159023.z.b #19	ENSGT00980000198621.b	ENSGT00940000166527.e #21	ENSGT00940000166061.b.b #22	ENSGT00390000002634.a.e.f #23	ENSGT00940000167370.f #24	ENSGT00950000183180.a.b.i.a #25	ENSGT00940000158438.n.e #26	ENSGT00940000154566.e #28	ENSGT00940000160567.s #29	ENSGT00940000159412.c #30	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c #31	ENSGT00940000159172.g #32	ENSGT00940000160276.h #33	ENSGT00950000182940.b.a.b.a.a.c #34	ENSGT00510000048165.f #35	ENSGT00940000165753.c #36	ENSGT00940000163828.a.b.b.e
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00390000017863.d	ENSGT00940000154337.a.a.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00940000176137 #10	ENSGT00390000008096.C.a.d #11	ENSGT00940000155660.b.h #12	ENSGT00940000156439.d.c #13	ENSGT00530000063609.b.w.j #14	ENSGT00390000009313.p.a #15	ENSGT00950000183127.c.a #16	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b.e #18	ENSGT00940000159023.z.a.b #19	ENSGT00940000166527.e #21	ENSGT00940000166061.b.b #22	ENSGT00390000002634.a.e.f #23	ENSGT00940000167370.f #24	ENSGT00950000183180.a.b.i.a #25	ENSGT00940000158438.n.e #26	ENSGT00940000154566.e #28	ENSGT00940000160567.s #29	ENSGT00940000159412.c #30	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c #31	ENSGT00940000159172.g #32	ENSGT00940000160276.h #33	ENSGT00950000182940.b.a.b.a.a.c #34	ENSGT00510000048165.f #35	ENSGT00940000165753.c #36	ENSGT00940000163828.a.b.b.e
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005011045	rab5ab (ENSOTSG00005011027) #7	efhb (ENSOTSG00005008535)	ENSOTSG00005008532	si:dkey-82o10.4 (ENSOTSG00005008528) #9	ENSOTSG00005008524 #10	ENSOTSG00005008515 #11	ENSOTSG00005008513 #12	ENSOTSG00005008512 #13	ENSOTSG00005008511 #14	ENSOTSG00005007783 #16	VMO1 (ENSOTSG00005007762) #15	ENSOTSG00005007760 #18	ENSOTSG00005007759 #19	pbx2 (ENSOTSG00005007758) #21	ENSOTSG00005007748 #22	dnase2 (ENSOTSG00005007746) #23	rgl2 (ENSOTSG00005007742) #24	PHF1 (ENSOTSG00005007739) #25	SYNGAP1 (ENSOTSG00005007737) #26	smg5 (ENSOTSG00005007486) #28	PAQR6 (ENSOTSG00005007482) #29	ntrk1 (ENSOTSG00005007479) #30	ENSOTSG00005007475	rbm8a (ENSOTSG00005007474) #31	otud7b (ENSOTSG00005007467) #32	mtmr11 (ENSOTSG00005007464) #33	SV2A (ENSOTSG00005007461) #34	bola1 (ENSOTSG00005007451) #35	nr2f5 (ENSOTSG00005007449) #36	ENSOTSG00005007448
Huchen	MODERN SPECIES	445								PLCL2 (ENSHHUG00000038915) #12	ENSHHUG00000038927 #13	ENSHHUG00000038955 #14	VMO1 (ENSHHUG00000038962) #15	ENSHHUG00000038989 #16	ENSHHUG00000039762 #18	ENSHHUG00000039797	pbx2 (ENSHHUG00000039805) #21	ENSHHUG00000039829 #22	dnase2 (ENSHHUG00000039834) #23	rgl2 (ENSHHUG00000039841) #24	PHF1 (ENSHHUG00000039873) #25	smg5 (ENSHHUG00000039950) #28	PAQR6 (ENSHHUG00000040050) #29	ntrk1 (ENSHHUG00000040059) #30	ENSHHUG00000040068 #30	ENSHHUG00000040082	rbm8a (ENSHHUG00000040095) #31	otud7b (ENSHHUG00000040135) #32	mtmr11 (ENSHHUG00000040147) #33	SV2A (ENSHHUG00000040181) #34	bola1 (ENSHHUG00000040192) #35	nr2f5 (ENSHHUG00000040196) #36	ENSHHUG00000040201
Northern pike	MODERN SPECIES	19	ENSELUG00000013678	nr1d2a (ENSELUG00000013653)	ube2e2 (ENSELUG00000013551)	ZNF385D (ENSELUG00000013443)	rab5ab (ENSELUG00000027339) #7	efhb (ENSELUG00000013423)	ENSELUG00000013387 #11	PLCL2 (ENSELUG00000013315) #12	ENSELUG00000013267	ENSELUG00000013226 #14	ENSELUG00000013187 #15	BRD2 (ENSELUG00000013167) #18	ENSELUG00000013120 #19	ENSELUG00000013110	pbx2 (ENSELUG00000013086) #21	ENSELUG00000013047 #22	dnase2 (ENSELUG00000013030) #23	rgl2 (ENSELUG00000000473) #24	PHF1 (ENSELUG00000012939) #25	SYNGAP1 (ENSELUG00000012732) #26	smg5 (ENSELUG00000012585) #28	PAQR6 (ENSELUG00000012518) #29	ntrk1 (ENSELUG00000012483) #30	rbm8a (ENSELUG00000033507) #31	otud7b (ENSELUG00000000461) #32	mtmr11 (ENSELUG00000012368) #33	ENSELUG00000012315	SV2A (ENSELUG00000001522) #34	bola1 (ENSELUG00000012263) #35	nr2f5 (ENSELUG00000012245) #36	ENSELUG00000012232
Otomorpha	ANCESTRAL SPECIES	8	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313.ib #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.eb #31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36
Otophysi	ANCESTRAL SPECIES	1	ENSGT01050000244814.a.a.b.b.b.a.a.d.a	ENSGT00990000203527.a.a.b	ENSGT01100000263535.b.a.b.bb	ENSGT00940000176137 #10	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313.ib.a #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b	ENSGT00390000018094.l	ENSGT00920000149145	ENSGT00940000154222.d.a	ENSGT00940000178392	ENSGT00390000001883	ENSGT00940000163195.A.c	ENSGT00940000164651.a.a.d	ENSGT01090000260131	ENSGT00940000161647	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b
Characiphysae	ANCESTRAL SPECIES	37	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313.ib.a #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b.e.a	ENSGT00390000018094.l	ENSGT00920000149145	ENSGT00940000154222.d.a	ENSGT00940000178392	ENSGT00390000001883	ENSGT00940000163195.A.c	ENSGT00940000164651.a.a.d	ENSGT01090000260131	ENSGT00940000161647	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b
Channel catfish	MODERN SPECIES	15	nek10 (ENSIPUG00000023337)	Nr1d2 (ENSIPUG00000023370)	ube2e2 (ENSIPUG00000023378)	znf385d (ENSIPUG00000023386)	rab5ab (ENSIPUG00000023392) #7	efhb (ENSIPUG00000023422)	satb1 (ENSIPUG00000023428) #11	ENSIPUG00000023470	plcl2 (ENSIPUG00000005047) #12	ENSIPUG00000005071 #13	RFTN1 (ENSIPUG00000005084) #14	VMO1 (ENSIPUG00000005135) #15	BRD2 (ENSIPUG00000005161) #18	ABCB2 (ENSIPUG00000005210) #19	pbx2 (ENSIPUG00000005246) #21	ENSIPUG00000005288 #22	ext1a (ENSIPUG00000005297)	rad21a (ENSIPUG00000005316)	eif3ha (ENSIPUG00000005370)	CSMD3 (ENSIPUG00000005406)	CTHRC1 (ENSIPUG00000005595)	slc25a32 (ENSIPUG00000005619)	septin7b (ENSIPUG00000005643)	ENSIPUG00000005674	col28a1b (ENSIPUG00000005698)	mios (ENSIPUG00000005746)	ica1 (ENSIPUG00000005789)	ENSIPUG00000005827	THSD7A (ENSIPUG00000005855)	ENSIPUG00000006069	mex3a (ENSIPUG00000006083)
Characiphysae_b	ANCESTRAL SPECIES	37	ENSGT00940000165358	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313.ib.a #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b.e.a	ENSGT00390000018094.l	ENSGT00920000149145	ENSGT00940000154222.d.a	ENSGT00940000178392	ENSGT00390000001883	ENSGT00940000164651.a.a.d	ENSGT01090000260131	ENSGT00940000161647	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b	ENSGT00950000182883.a.b.b
Characoidei	ANCESTRAL SPECIES	34		ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313.ib.a #15	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b.e.a	ENSGT00390000018094.l	ENSGT00920000149145	ENSGT00940000154222.d.a	ENSGT00940000178392	ENSGT00390000001883	ENSGT00940000164651.a.a.d	ENSGT01090000260131	ENSGT00940000161647	ENSGT00940000163195.A.c	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b
Red-bellied piranha	MODERN SPECIES	302		ZNF385D (ENSPNAG00000009509)	rab5ab (ENSPNAG00000009496) #7	efhb (ENSPNAG00000001316)	si:dkey-82o10.4 (ENSPNAG00000009393) #9	ENSPNAG00000029692 #11	PLCL2 (ENSPNAG00000029597) #12	ENSPNAG00000029548 #13	ENSPNAG00000004609 #14	ENSPNAG00000005402 #15	ENSPNAG00000029458 #17	brd2b (ENSPNAG00000029401) #18	ENSPNAG00000004990 #19	ENSPNAG00000028983	pbx2 (ENSPNAG00000028911) #21	ENSPNAG00000028867 #22
Electric eel	MODERN SPECIES	182		NEK10 (ENSEEEG00000002522)	nr1d2a (ENSEEEG00000002541)	ube2e2 (ENSEEEG00000002544)	ZNF385D (ENSEEEG00000002547)	rab5ab (ENSEEEG00000002562) #7	efhb (ENSEEEG00000002592)	ENSEEEG00000002600 #11	PLCL2 (ENSEEEG00000002606) #12	ENSEEEG00000002642 #13	ENSEEEG00000002981 #14	ENSEEEG00000002985 #15	brd2b (ENSEEEG00000002992) #18	ENSEEEG00000002995 #19	pbx2 (ENSEEEG00000003007) #21	ENSEEEG00000003010 #22	ext1a (ENSEEEG00000003012)	rad21a (ENSEEEG00000003022)	EIF3H (ENSEEEG00000003063)	CSMD3 (ENSEEEG00000003272)	ENSEEEG00000003326	CTHRC1 (ENSEEEG00000003327)	slc25a32b (ENSEEEG00000003328)	septin7b (ENSEEEG00000003349)	ENSEEEG00000004685
Cyprinoidei	ANCESTRAL SPECIES	25	ENSGT01070000256195	ENSGT00940000160242.a	ENSGT00940000154337.a.a.d #7	ENSGT00530000063528.A.b	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00940000161847.b.b #17	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00940000155321.d.a	ENSGT00940000154655.a.i.a	ENSGT00940000155549.a.b	ENSGT00390000018094.l	ENSGT00920000149145	ENSGT00940000154222.d.a.k	ENSGT00390000001883	ENSGT00940000164651.a.a.d	ENSGT00940000163195.A.c	ENSGT00390000015038	ENSGT00950000183046.b.a	ENSGT00390000005530.a.b	ENSGT00950000182883.a.b.b	ENSGT00940000155427.a	ENSGT00410000029015
Cyprininae	ANCESTRAL SPECIES	691				ENSGT01070000256195	ENSGT00940000160242.a.b	ENSGT00940000154337.a.a.d #7	ENSGT00530000063528.A.b	ENSGT00390000008096.C.a.a.b #11	ENSGT00940000155660.b.f #12	ENSGT00980000198854.a	ENSGT00530000063609.b.w.a #14	ENSGT00940000161847.b.b.b #17	ENSGT00940000153385.b.a.b.fd.b.d #18	ENSGT00940000159023.x #19	ENSGT00940000166527.c #21	ENSGT00940000166061.b #22
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT00990000203527.a.a.b.d	ENSGT00940000161037	ENSGT00940000155168.a.a.a	ENSGT00940000160242.a.a	ENSGT00940000154337.a.a.c #7	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a.a.a #11	ENSGT00940000155660.b.e #12	ENSGT00980000198854.b	ENSGT00530000063609.b.w.b #14	ENSGT00940000161847.b.b.a #17	ENSGT00940000153385.b.a.b.fd.b.c #18	ENSGT00940000159023.w #19	ENSGT00980000198621	ENSGT00940000166527.d #21	ENSGT00940000166061.b #22	ENSGT00940000155321.d.a.o.a	ENSGT00940000154655.a.i.a.a	ENSGT00730000111042.`b.a	ENSGT00940000155549.a.b.c	ENSGT00390000018094.l.a	ENSGT00920000149145.m.a	ENSGT00940000154222.d.a.k	ENSGT00390000001883	ENSGT00390000015038.f	ENSGT00950000183046.b.a.a	ENSGT00390000005530.a.b.y	ENSGT00950000182883.a.b.b.a.b	ENSGT00940000155427.a.b	ENSGT00940000166523.e	ENSGT00940000165149.e.b
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	149	ube2e2 (ENSSGRG00000052769)	ZNF385D (ENSSGRG00000052781)	rab5ab (ENSSGRG00000052799) #7	efhb (ENSSGRG00000052810)	ENSSGRG00000052811	ENSSGRG00000052812 #10	ENSSGRG00000052813 #11	PLCL2 (ENSSGRG00000052814) #12	ENSSGRG00000052815	ENSSGRG00000052816	ENSSGRG00000052817 #14	BRD2 (ENSSGRG00000052820) #18	brd2b (ENSSGRG00000052821) #18	ENSSGRG00000052823 #19	pbx2 (ENSSGRG00000052830) #21	ENSSGRG00000052832 #22	EXT1 (ENSSGRG00000052834)	rad21a (ENSSGRG00000052859)	eif3ha (ENSSGRG00000052895)	ENSSGRG00000052930	CTHRC1 (ENSSGRG00000052943)	septin7b (ENSSGRG00000052958)	ENSSGRG00000053284	mios (ENSSGRG00000053286)	ENSSGRG00000053290	ENSSGRG00000053297	THSD7A (ENSSGRG00000053303)	ENSSGRG00000053307	rab11al (ENSSGRG00000053308)	rab25b (ENSSGRG00000053309)	lamtor2 (ENSSGRG00000053310)
Golden-line barbel	MODERN SPECIES	152											PLCL2 (ENSSGRG00000050110) #12	ENSSGRG00000050109	ENSSGRG00000050108 #14	brd2b (ENSSGRG00000050102) #18	pbx2 (ENSSGRG00000050100) #21	ENSSGRG00000050099 #22	ext1a (ENSSGRG00000049923)	rad21a (ENSSGRG00000049870)	eif3ha (ENSSGRG00000049851)	ENSSGRG00000049819	CTHRC1 (ENSSGRG00000049808)	slc25a32b (ENSSGRG00000049805)	ENSSGRG00000048675	ENSSGRG00000048648	ENSSGRG00000048647	col28a1b (ENSSGRG00000048643)	mios (ENSSGRG00000048627)	ICA1 (ENSSGRG00000048623)	ENSSGRG00000048621	THSD7A (ENSSGRG00000048604)	ENSSGRG00000048598
Common carp reference	MODERN SPECIES	2	lim2.5 (ENSCCRG00000020849)	ENSCCRG00000055231	nr1d2a (ENSCCRG00000072521)	ube2e2 (ENSCCRG00000034670)	ENSCCRG00000027215	efhb (ENSCCRG00000027291)	rab5ab (ENSCCRG00000021082) #7	ENSCCRG00000070874 #11	PLCL2 (ENSCCRG00000005178) #12	ENSCCRG00000030546	ENSCCRG00000005149 #14	ENSCCRG00000020809 #17	brd2b (ENSCCRG00000074838) #18	ENSCCRG00000081524	pbx2 (ENSCCRG00000010435) #21	ENSCCRG00000010430 #22	ext1a (ENSCCRG00000019432)	rad21a (ENSCCRG00000024578)	eif3ha (ENSCCRG00000023810)	ENSCCRG00000064038	ENSCCRG00000078770	slc25a32b (ENSCCRG00000075919)	ENSCCRG00000081747	ENSCCRG00000058022	mios (ENSCCRG00000025187)	ENSCCRG00000082404	ENSCCRG00000076044	ENSCCRG00000047723	ENSCCRG00000064718	rab11al (ENSCCRG00000058461)	rab25b (ENSCCRG00000003390)
Goldfish	MODERN SPECIES	7	NEK10 (ENSCARG00000019329)	nr1d2a (ENSCARG00000019356)	ube2e2 (ENSCARG00000019368)	ZNF385D (ENSCARG00000019375)	RAB5A (ENSCARG00000019389) #7	ENSCARG00000019416	ENSCARG00000019427 #11	PLCL2 (ENSCARG00000019453) #12	ENSCARG00000019495 #13	ENSCARG00000020148 #14	ENSCARG00000020159	ENSCARG00000020164 #17	brd2b (ENSCARG00000020170) #18	TAP1 (ENSCARG00000020234) #19	pbx2 (ENSCARG00000020338) #21	ENSCARG00000020353 #22	ENSCARG00000020361	ext1a (ENSCARG00000020369)	rad21a (ENSCARG00000020411)	eif3ha (ENSCARG00000020453)	CSMD3 (ENSCARG00000020568)	CTHRC1 (ENSCARG00000020857)	slc25a32b (ENSCARG00000020867)	septin7b (ENSCARG00000020970)	ENSCARG00000023971	col28a1b (ENSCARG00000024055)	mios (ENSCARG00000024080)	ENSCARG00000024110	ICA1 (ENSCARG00000024114)	ENSCARG00000024135	THSD7A (ENSCARG00000024164)
Clupeiformes	ANCESTRAL SPECIES	79	ENSGT00940000155168.a.a	ENSGT00940000165550.a.b.b	ENSGT00940000155985	ENSGT00940000160242.a	ENSGT00940000154337.a.a #7	ENSGT00390000004145.a #9	ENSGT00390000008096.C.a #11	ENSGT00940000155660.b #12	ENSGT00940000156439.d #13	ENSGT00530000063609.b.w #14	ENSGT00390000009313.ib #15	ENSGT00940000153385.b.a.b.fd.b #18	ENSGT00940000159023 #19	ENSGT00980000198621	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e.d #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567 #29	ENSGT00940000159412 #30	ENSGT00760000119652	ENSGT00730000111185.db.a ##31	ENSGT00940000159172 #32	ENSGT00940000160276 #33	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753 #36	ENSGT00940000165143.a.b
Atlantic herring	MODERN SPECIES	2	dtnbp1a (ENSCHAG00000007452)	ENSCHAG00000007434	ENSCHAG00000007407	ENSCHAG00000007395	UBE2E2 (ENSCHAG00000007375)	si:dkey-82o10.4 (ENSCHAG00000007368) #9	ENSCHAG00000007288 #11	ENSCHAG00000007270	PLCL2 (ENSCHAG00000007265) #12	ENSCHAG00000007216 #13	ENSCHAG00000007206 #14	ENSCHAG00000007176 #15	BRD2 (ENSCHAG00000006857) #18	ENSCHAG00000006649 #19	pbx2 (ENSCHAG00000006602) #21	ENSCHAG00000006588 #22	ENSCHAG00000006550 #23	rgl2 (ENSCHAG00000006474) #24	ENSCHAG00000006133 #25	SYNGAP1 (ENSCHAG00000005164) #26	smg5 (ENSCHAG00000002837) #28	PAQR6 (ENSCHAG00000002634) #29	ntrk1 (ENSCHAG00000002438) #30	ENSCHAG00000002411	ENSCHAG00000002343	ENSCHAG00000009602	ENSCHAG00000009551	ENSCHAG00000009521	rbm8a (ENSCHAG00000009474) ##31	otud7b (ENSCHAG00000009441) #32	mtmr11 (ENSCHAG00000009351) #33
Osteoglossiformes	ANCESTRAL SPECIES	1													ENSGT00940000159023 #19	ENSGT00980000198606	ENSGT00940000166527 #21	ENSGT00940000166061.b #22	ENSGT00390000002634.a.e #23	ENSGT00940000167370 #24	ENSGT00950000183180.a.b.l #25	ENSGT00940000158438.n #26	ENSGT00940000154566 #28	ENSGT00940000160567.p #29	ENSGT00940000159412.e #30	ENSGT00730000111185.db.a ##31	ENSGT00940000159172.j #32	ENSGT00940000160276.l #33	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #34	ENSGT00510000048165 #35	ENSGT00940000165753.b #36	ENSGT00940000165143.a.a
P. kingsleyae	MODERN SPECIES	65										ENSPKIG00000008618 ##17	BRD2 (ENSPKIG00000008636) #18	ENSPKIG00000008666	TAP1 (ENSPKIG00000008682) #19	ENSPKIG00000008714	pbx2 (ENSPKIG00000008747) #21	ENSPKIG00000008802 #22	dnase2 (ENSPKIG00000008826) #23	rgl2 (ENSPKIG00000008901) #24	PHF1 (ENSPKIG00000009103) #25	SYNGAP1 (ENSPKIG00000009301) #26	smg5 (ENSPKIG00000009402) #28	PAQR6 (ENSPKIG00000009491) #29	ntrk1 (ENSPKIG00000009512) #30	afp4 (ENSPKIG00000009538)	rbm8a (ENSPKIG00000009551) ##31	ENSPKIG00000009597 #33	ENSPKIG00000009661	SV2A (ENSPKIG00000009685) #34	bola1 (ENSPKIG00000009727) #35	nr2f5 (ENSPKIG00000009747) #36	rpz2 (ENSPKIG00000009759)
Asian bonytongue	MODERN SPECIES	9	ENSSFOG00015029140 #19	ENSSFOG00015030419	pbx2 (ENSSFOG00015030085) #21	ENSSFOG00015024180	dnase2 (ENSSFOG00015029513) #23	rgl2 (ENSSFOG00015025438) #24	ENSSFOG00015027295 ##16	ENSSFOG00015020713 ##16	ENSSFOG00015022238 ##16	ENSSFOG00015016734 ##17	ENSSFOG00015016883 ##16	ENSSFOG00015025072 ##17	ENSSFOG00015024183 #19	ENSSFOG00015024182	pbx2 (ENSSFOG00015024181) #21	ENSSFOG00015031300 #22	dnase2 (ENSSFOG00015024179) #23	rgl2 (ENSSFOG00015024178) #24	PHF1 (ENSSFOG00015024177) #25	SYNGAP1 (ENSSFOG00015024176) #26	smg5 (ENSSFOG00015024175) #28	PAQR6 (ENSSFOG00015030705) #29	ENSSFOG00015024174	ntrk1 (ENSSFOG00015024172) #30	rbm8a (ENSSFOG00015024171) ##31	OTUD7B (ENSSFOG00015024170) #32	MTMR11 (ENSSFOG00015024169) #33	SV2A (ENSSFOG00015024167) #34	bola1 (ENSSFOG00015024166) #35	nr2f5 (ENSSFOG00015024164) #36	rpz2 (ENSSFOG00015024163)
Reedfish	MODERN SPECIES		ENSECRG00000000623	ENSECRG00000000611	wdr46 (ENSECRG00000000589)	ENSECRG00000000581	pfdn6 (ENSECRG00000000570)	ENSECRG00000000551	ENSECRG00000000538	ENSECRG00000000505	ENSECRG00000000483	ENSECRG00000000477	ENSECRG00000000472	ENSECRG00000000446	ENSECRG00000000454	ENSECRG00000000460	ENSECRG00000000428	ENSECRG00000000416 #22	ENSECRG00000000411 #23	zbtb22b (ENSECRG00000000404)	ENSECRG00000000401	rgl2 (ENSECRG00000000391) #24	ENSECRG00000000389	ENSECRG00000000388	ENSECRG00000005119	ENSECRG00000005102	tap2a (ENSECRG00000004814)	ENSECRG00000004735 #19	psmb8a (ENSECRG00000004720)	psmb9a (ENSECRG00000004711)	ENSECRG00000004704 ##17	ENSECRG00000004693 ##16	hsd17b8 (ENSECRG00000004681)
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Aves	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000166061.b #22
Zebra finch	MODERN SPECIES	18	ENSTGUG00000024628	PRCC (ENSTGUG00000025947)	HDGF (ENSTGUG00000017376)	MRPL24 (ENSTGUG00000017375)	METTL25B (ENSTGUG00000024904)	ISG20L2 (ENSTGUG00000028521)	CRABP2 (ENSTGUG00000025174)	ENSTGUG00000024389	ENSTGUG00000022793	ENSTGUG00000026517	BCAN (ENSTGUG00000023506)	HAPLN2 (ENSTGUG00000025869)	RHBG (ENSTGUG00000003473)	MEF2D (ENSTGUG00000003481)	IQGAP3 (ENSTGUG00000003501)	ENSTGUG00000003613 #22	NAXE (ENSTGUG00000003621)	ENSTGUG00000003636	UBQLN4 (ENSTGUG00000003644)	LAMTOR2 (ENSTGUG00000003670)	RAB25 (ENSTGUG00000003675)	ENSTGUG00000003680	MEX3A (ENSTGUG00000003692)	LMNA (ENSTGUG00000015888)	SEMA4A (ENSTGUG00000003695)	ENSTGUG00000018930	SLC25A44 (ENSTGUG00000015885)	ENSTGUG00000024980	BGLAP (ENSTGUG00000003747)	SMG5 (ENSTGUG00000003748) #28	TMEM79 (ENSTGUG00000022613)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Actinopterygii	ANCESTRAL SPECIES	11	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b.i	ENSGT00940000175584	ENSGT01050000244970.b.j	ENSGT00940000176052	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000164919	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000164516	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000156900	ENSGT00390000018637	ENSGT00390000011359	ENSGT00940000153941.b	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164
Reedfish	MODERN SPECIES	8	dnaaf4 (ENSECRG00000019772)	pygo1 (ENSECRG00000019792)	PRTG (ENSECRG00000019885)	nedd4a (ENSECRG00000020594)	RFX7 (ENSECRG00000020644)	tex9 (ENSECRG00000020663)	mns1 (ENSECRG00000020681)	ENSECRG00000020697	ENSECRG00000020717	tcf12 (ENSECRG00000020790)	CGNL1 (ENSECRG00000020873)	MYZAP (ENSECRG00000020923)	polr2m (ENSECRG00000020969)	aldh1a2 (ENSECRG00000020978)	aqp9b (ENSECRG00000020994)	ENSECRG00000021021 ##22	lipca (ENSECRG00000021031)	adam10a (ENSECRG00000021057)	MINDY2 (ENSECRG00000021090)	sltm (ENSECRG00000021115)	ENSECRG00000021138	rnf111 (ENSECRG00000021147)	ccnb2 (ENSECRG00000021163)	MYO1E (ENSECRG00000021197)	FAM81A (ENSECRG00000021279)	mtmr10 (ENSECRG00000021307)	fan1 (ENSECRG00000021339)	mcee (ENSECRG00000021366)	mphosph10 (ENSECRG00000021377)	ENSECRG00000021395	TJP1 (ENSECRG00000021434)
Neopterygii	ANCESTRAL SPECIES	11	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b.i	ENSGT00940000175584	ENSGT01050000244970.b.j	ENSGT00940000176052	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000164919	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000164516	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000156900	ENSGT00390000018637	ENSGT00390000011359	ENSGT00940000153941.b	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Clupeocephala	ANCESTRAL SPECIES	136	ENSGT00940000177687	ENSGT00940000154870.A.a	ENSGT00390000013847	ENSGT00950000182919.B.a.g	ENSGT00940000159283.c.b	ENSGT00940000177715	ENSGT00950000183112.b.b	ENSGT00940000158522.l	ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00940000157062	ENSGT00940000160806	ENSGT00390000016136	ENSGT00990000204496	ENSGT00390000018319.b.b	ENSGT00740000116913	ENSGT00950000182907.a.a.ic.a	ENSGT00530000063760.b.g.b	ENSGT00550000075028	ENSGT00940000162345.c.b	ENSGT00940000163854.a.b
Otomorpha	ANCESTRAL SPECIES	8	ENSGT00940000177687	ENSGT00940000154870.A.a	ENSGT00390000013847	ENSGT00950000182919.B.a.g	ENSGT00940000159283.c.b	ENSGT00940000177715	ENSGT00950000183112.b.b	ENSGT00940000158522.l	ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00390000010652.A.a.b	ENSGT00940000157062	ENSGT00940000160806	ENSGT00940000180968	ENSGT00390000018319.a.a.b	ENSGT00950000182907.a.a.ic.b	ENSGT00530000063760.b.g.a	ENSGT00940000162345.c.a	ENSGT00940000163854.a.a	ENSGT00930000151788	ENSGT00390000014244
Otophysi	ANCESTRAL SPECIES	185	ENSGT00400000025005.b	ENSGT00390000013847	ENSGT00950000182919.B.a.g	ENSGT00940000159283.c.b	ENSGT00940000177715	ENSGT00950000183112.b.b	ENSGT00940000158522.l	ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT01080000257659	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00940000160806	ENSGT00390000010652.A.a.b	ENSGT00940000157062
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000182506	ENSGT00940000159822	ENSGT00940000177687	ENSGT00940000154870.A.a	ENSGT01080000258118	ENSGT00400000025005.b	ENSGT00390000013847	ENSGT00950000182919.B.a.g	ENSGT00940000159283.c.b	ENSGT00940000177715	ENSGT00950000183112.b.b	ENSGT00940000158522.l	ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00390000007287	ENSGT00940000156475.e	ENSGT00940000158500	ENSGT00940000155880.e	ENSGT00940000155957.a	ENSGT00390000015236	ENSGT00940000165630	ENSGT00940000166701	ENSGT00940000156007.l	ENSGT00390000017856.a	ENSGT00940000155029.c.a.e.a
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000182506	ENSGT00940000159822	ENSGT00940000177687	ENSGT00940000154870.A.a	ENSGT01080000258118	ENSGT00400000025005.b	ENSGT00390000013847	ENSGT00950000182919.B.a.g	ENSGT00940000159283.c.b	ENSGT00940000177715	ENSGT00950000183112.b.b	ENSGT00940000158522.l	ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00390000007287	ENSGT00940000156475.e	ENSGT00940000158500	ENSGT00940000155880.e	ENSGT00940000155957.a	ENSGT00390000015236	ENSGT00940000165630	ENSGT00940000166701	ENSGT00940000156007.l	ENSGT00390000017856.a	ENSGT00940000155029.c.a.e.a
Characoidei	ANCESTRAL SPECIES	7	ENSGT00940000153269.a.a	ENSGT00940000153269.a.b	ENSGT00940000159822	ENSGT00940000177687	ENSGT00940000154870.A.a	ENSGT01080000258118	ENSGT00400000025005.b	ENSGT00390000013847	ENSGT00950000182919.B.a.g	ENSGT00940000159283.c.b	ENSGT00950000183112.b.b	ENSGT00940000158522.l	ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00390000007287	ENSGT00940000156475.e	ENSGT00940000158500	ENSGT00940000155880.e	ENSGT00940000155957.a	ENSGT00390000015236	ENSGT00940000165630	ENSGT00940000166701	ENSGT00940000156007.l	ENSGT00390000017856.a	ENSGT00940000155029.c.a.e.a
Red-bellied piranha	MODERN SPECIES	210	dcst2 (ENSPNAG00000007967)	ENSPNAG00000007979	ADAM15 (ENSPNAG00000000614)	ENSPNAG00000008074	ENSPNAG00000008088	si:dkey-7j14.5 (ENSPNAG00000008096)	nudt17 (ENSPNAG00000000673)	mtx1a (ENSPNAG00000000679)	thbs3a (ENSPNAG00000000707)	hjv (ENSPNAG00000000719)	txnipb (ENSPNAG00000005542)	polr3glb (ENSPNAG00000000732)	ANKRD34A (ENSPNAG00000000739)	GATAD2B (ENSPNAG00000008185)	iqgap3 (ENSPNAG00000000798)	ENSPNAG00000000823 ##22	ENSPNAG00000000832	ENSPNAG00000008271	DENND4B (ENSPNAG00000008278)	ENSPNAG00000000863	ENSPNAG00000008301	ENSPNAG00000008308
Mexicana tetra	MODERN SPECIES	1	s100v1 (ENSAMXG00000040267)	ENSAMXG00000043244	ENSAMXG00000018254	ENSAMXG00000041354	ENSAMXG00000039624	si:dkey-7j14.5 (ENSAMXG00000031244)	nudt17 (ENSAMXG00000036443)	mtx1a (ENSAMXG00000031332)	thbs3a (ENSAMXG00000018212)	hjv (ENSAMXG00000032652)	txnipb (ENSAMXG00000001785)	polr3glb (ENSAMXG00000001802)	ANKRD34A (ENSAMXG00000030756)	GATAD2B (ENSAMXG00000001813)	iqgap3 (ENSAMXG00000001849)	ENSAMXG00000001932 ##22	ENSAMXG00000029545	ENSAMXG00000001957	DENND4B (ENSAMXG00000001965)	ENSAMXG00000000498	STK31 (ENSAMXG00000000509)	NPY (ENSAMXG00000032963)	pals2a (ENSAMXG00000000534)	gsdmeb (ENSAMXG00000000551)	OSBPL3 (ENSAMXG00000000554)	C7orf31 (ENSAMXG00000029315)	ENSAMXG00000000574	GRIK2 (ENSAMXG00000001407)	ASCC3 (ENSAMXG00000001395)	sim1a (ENSAMXG00000035738)	cyb5r4 (ENSAMXG00000029349)
Cyprinoidei	ANCESTRAL SPECIES	91	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000160311.a.a	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00940000165015	ENSGT00940000155141.w.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00940000160806	ENSGT00390000010652.A.a.b	ENSGT00940000157062
Cyprininae	ANCESTRAL SPECIES	737							ENSGT00940000154868.a.b.b.b	ENSGT00390000007371.f.a	ENSGT00950000182900.B.b	ENSGT00940000165015	ENSGT00940000155141.w.b.p	ENSGT00940000153704.A.q.b	ENSGT00940000166989	ENSGT00940000158728.l	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT00940000164559.B
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	35	ENSCARG00000058422	ENSCARG00000058447	drd2l (ENSCARG00000058488)	ENSCARG00000058509	ENSCARG00000058516	ENSCARG00000058531	pabpc1a (ENSCARG00000058542)	nr0b2a (ENSCARG00000058861)	ENSCARG00000058886	tpbgl (ENSCARG00000058896)	tmem222a (ENSCARG00000058910)	wdtc1 (ENSCARG00000058941)	ENSCARG00000058982	azi2 (ENSCARG00000059004)	ENSCARG00000059012	ENSCARG00000053413 ##22	ENSCARG00000053437	ENSCARG00000053518	ENSCARG00000053592	DENND4B (ENSCARG00000053641)	ENSCARG00000053860	SLC39A1 (ENSCARG00000053878)	CREB3L4 (ENSCARG00000053883)	cyp11c1 (ENSCARG00000053897)	pklr (ENSCARG00000054302)	ENSCARG00000054845	zbtb7b (ENSCARG00000054928)	khdc4 (ENSCARG00000054943)	malsu1 (ENSCARG00000055039)	spag1b (ENSCARG00000055088)	ENSCARG00000055321
Goldfish	MODERN SPECIES	7	PHLDB3 (ENSCARG00000005986)	ENSCARG00000006004	pabpc1a (ENSCARG00000006050)	nr0b2a (ENSCARG00000006500)	KDF1 (ENSCARG00000006515)	tpbgl (ENSCARG00000006526)	tmem222a (ENSCARG00000006560)	wdtc1 (ENSCARG00000006598)	cndp1 (ENSCARG00000006732)	ENSCARG00000008547	azi2 (ENSCARG00000008557)	ENSCARG00000008565	cmc1 (ENSCARG00000008570)	eomesb (ENSCARG00000008583)	iqgap3 (ENSCARG00000009034)	ENSCARG00000020434 ##22	ENSCARG00000020450	ENSCARG00000020503	ENSCARG00000001982	ENSCARG00000001990	ENSCARG00000002012	DENND4B (ENSCARG00000002069)	ENSCARG00000002245	ENSCARG00000002258	clk2b (ENSCARG00000002335)	ENSCARG00000002517	pklr (ENSCARG00000002571)	ENSCARG00000002835	zbtb7b (ENSCARG00000002850)	khdc4 (ENSCARG00000002856)	fbxo43 (ENSCARG00000002861)
Cyprininae_a	ANCESTRAL SPECIES	950																ENSGT00940000166061.a ##22	ENSGT00940000164559.B.e	ENSGT01090000260029.a.b.b.b.a.a.b.b.b.b.b.b.a.b.b.a.a
Golden-line barbel	MODERN SPECIES	1405													azi2 (ENSSGRG00000011268)	ENSSGRG00000011267	eomesb (ENSSGRG00000011266)	ENSSGRG00000011265 ##22	ENSSGRG00000011263	ENSSGRG00000011262	ENSSGRG00000011261	ENSSGRG00000011260	ENSSGRG00000011259
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Atlantic herring	MODERN SPECIES	2	aste1a (ENSCHAG00000000445)	ATP2C1 (ENSCHAG00000001630)	PIK3R4 (ENSCHAG00000009218)	ENSCHAG00000009322	ENSCHAG00000009329	ENSCHAG00000009414	ENSCHAG00000009584	ENSCHAG00000009611	capn7 (ENSCHAG00000009651)	sh3bp5b (ENSCHAG00000009701)	mettl6 (ENSCHAG00000009868)	eaf1 (ENSCHAG00000009875)	bmper (ENSCHAG00000009999)	GATAD2B (ENSCHAG00000011806)	BBS9 (ENSCHAG00000011952)	ENSCHAG00000012060 ##22	ENSCHAG00000012076	ENSCHAG00000012202	ENSCHAG00000012234	DENND4B (ENSCHAG00000012345)	ENSCHAG00000015037	ENSCHAG00000015088	SLC39A1 (ENSCHAG00000015110)	CREB3L4 (ENSCHAG00000015120)	ENSCHAG00000015174	ENSCHAG00000015185	ANP32E (ENSCHAG00000015202)	plekho1b (ENSCHAG00000015213)	ENSCHAG00000015227	pogzb (ENSCHAG00000015242)	selenbp1 (ENSCHAG00000015419)
Euteleosteomorpha	ANCESTRAL SPECIES	106														ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000160472	ENSGT00390000010652.A.a.a	ENSGT00940000157062	ENSGT00940000160806	ENSGT00940000180968	ENSGT00390000018319.a.a.b	ENSGT00950000182907.a.a.ic.b	ENSGT00530000063760.b.g.a	ENSGT00940000162345.c.a	ENSGT00940000163854.a.a	ENSGT00390000014244	ENSGT00940000165572	ENSGT00450000040262.i
Acanthomorphata	ANCESTRAL SPECIES	307												ENSGT00990000203984	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000158522.l
Euacanthomorphacea	ANCESTRAL SPECIES	76	ENSGT00940000162345.c.a	ENSGT00940000163854.a.a	ENSGT00940000166014	ENSGT00940000164012.C.j	ENSGT00390000014244	ENSGT00550000074892	ENSGT00940000165572	ENSGT00450000040262.i	ENSGT00940000165419.a	ENSGT00940000158522.l	ENSGT01100000263475.f.a	ENSGT00940000169539	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B
Percomorphaceae	ANCESTRAL SPECIES	114					ENSGT00950000182991.A.a.c.a.b	ENSGT00950000183108.b.a.b	ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00390000002390.b.e	ENSGT00940000164105.a	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B
Percomorphaceae_B	ANCESTRAL SPECIES	1				ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT01010000223208	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00550000074892	ENSGT00390000014244	ENSGT00940000160649	ENSGT00930000151788	ENSGT00940000163854.a.a	ENSGT00940000165930.A	ENSGT00940000166014
Percomorphaceae_C	ANCESTRAL SPECIES	2				ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT01010000223208	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00550000074892	ENSGT00390000014244	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b
Percomorphaceae_D	ANCESTRAL SPECIES	2				ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00390000002390.b.e	ENSGT00940000164105.a	ENSGT00950000183108.b.a.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT01010000223208	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00390000014244	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00940000178627	ENSGT00940000167105
Carangaria	ANCESTRAL SPECIES	1				ENSGT00950000182991.A.a.c.a.b	ENSGT00950000183108.b.a.b	ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00390000002390.b.e	ENSGT00940000164105.a	ENSGT00390000012355.B.b	ENSGT01010000223208	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00390000014244	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00940000167105	ENSGT00950000183112.b.b
Carangaria_A	ANCESTRAL SPECIES	44	ENSGT00390000010652.A.a.b	ENSGT00940000157062	ENSGT00390000016398.b	ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT01010000223208	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00390000014244	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00940000167105
Barramundi perch	MODERN SPECIES	80	ENSLCAG00010010618	nat16l (ENSLCAG00010010628)	ENSLCAG00010010634	SLC39A1 (ENSLCAG00010010639)	ENSLCAG00010010644	DENND4B (ENSLCAG00010010706)	TMEM79 (ENSLCAG00010010905)	decr1 (ENSLCAG00010010908)	pmvk (ENSLCAG00010010918)	ENSLCAG00010010994	CALB1 (ENSLCAG00010011308)	pnp4b (ENSLCAG00010011323)	ANKRD34A (ENSLCAG00010011327)	ENSLCAG00010011329	iqgap3 (ENSLCAG00010011400)	ENSLCAG00010011657 ##22	ENSLCAG00010011673	ENSLCAG00010011702	ENSLCAG00010011707	ENSLCAG00010011710	ENSLCAG00010011712	ENSLCAG00010011715	TXNIP (ENSLCAG00010011718)	bnipl (ENSLCAG00010011725)	prune (ENSLCAG00010011743)	myo1eb (ENSLCAG00010011779)	ENSLCAG00010011959	selenbp1 (ENSLCAG00010012128)	ENSLCAG00010012146	ENSLCAG00010012163	plekho1b (ENSLCAG00010012172)
Pleuronectoidei	ANCESTRAL SPECIES	114							ENSGT00950000182991.A.a.c.a.b	ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00390000002390.b.e	ENSGT00940000164105.a	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B
Tongue sole	MODERN SPECIES	4	NPR2 (ENSCSEG00000000622)	dek (ENSCSEG00000000612)	KCNV1 (ENSCSEG00000000608)	gbp (ENSCSEG00000000600)	ENSCSEG00000000578	ccne2 (ENSCSEG00000020495)	tp53inp1 (ENSCSEG00000020493)	decr1 (ENSCSEG00000020485)	pmvk (ENSCSEG00000020473)	ENSCSEG00000020479	ARHGEF2 (ENSCSEG00000020461)	ENSCSEG00000020454	gon4lb (ENSCSEG00000020441)	ANKRD34A (ENSCSEG00000020436)	iqgap3 (ENSCSEG00000020426)	ENSCSEG00000020420 ##22	ENSCSEG00000020416	ENSCSEG00000020409	ENSCSEG00000020402	plekho1b (ENSCSEG00000020399)	ENSCSEG00000020374	pogzb (ENSCSEG00000020370)	selenbp1 (ENSCSEG00000020362)	ENSCSEG00000020343	ENSCSEG00000020336	sh3d21 (ENSCSEG00000020331)	ENSCSEG00000020325	MAP7D1 (ENSCSEG00000020319)	ENSCSEG00000020313	snip1 (ENSCSEG00000020310)	dnali1 (ENSCSEG00000020307)
Anabantaria	ANCESTRAL SPECIES	2							ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00390000002390.b.e	ENSGT00940000164105.a	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00390000014244	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00940000178627
Anabantoidei	ANCESTRAL SPECIES	3								ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00390000002390.b.e	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00390000014244	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00940000178627	ENSGT00940000167105
Climbing perch	MODERN SPECIES	7					ENSATEG00000030137	ENSATEG00000026457	ENSATEG00000027774	ENSATEG00000026095	ENSATEG00000016367	ENSATEG00000016384	ENSATEG00000016440	ENSATEG00000025780	ENSATEG00000016486	ENSATEG00000026679	ENSATEG00000016525	ENSATEG00000028740 ##22	ENSATEG00000016833	ENSATEG00000017604	ENSATEG00000017648	ENSATEG00000017682	ENSATEG00000017694	bnipl (ENSATEG00000017705)	prune (ENSATEG00000017741)	myo1eb (ENSATEG00000017788)	ENSATEG00000017861	selenbp1 (ENSATEG00000017904)	ENSATEG00000017921	ENSATEG00000027253	ENSATEG00000017953	plekho1b (ENSATEG00000017979)	ENSATEG00000017988
Siamese fighting fish	MODERN SPECIES	7	rhbg (ENSBSLG00000019853)	hapln2 (ENSBSLG00000019778)	bcan (ENSBSLG00000019602)	ISG20L2 (ENSBSLG00000019585)	mettl25b (ENSBSLG00000019575)	ENSBSLG00000019568	ENSBSLG00000019556	ENSBSLG00000019544	decr1 (ENSBSLG00000019505)	pmvk (ENSBSLG00000019491)	ENSBSLG00000019424	ARHGEF2 (ENSBSLG00000018935)	ENSBSLG00000018876	ANKRD34A (ENSBSLG00000018735)	iqgap3 (ENSBSLG00000018458)	ENSBSLG00000018422 ##22	ENSBSLG00000018350	ENSBSLG00000018312	ENSBSLG00000018189	TXNIP (ENSBSLG00000017843)	bnipl (ENSBSLG00000017744)	prune (ENSBSLG00000017712)	myo1eb (ENSBSLG00000016809)	ENSBSLG00000015233	selenbp1 (ENSBSLG00000014743)	pogzb (ENSBSLG00000014663)	ENSBSLG00000014337	plekho1b (ENSBSLG00000014296)	ANP32E (ENSBSLG00000014285)	ENSBSLG00000014239	hjv (ENSBSLG00000014197)
Ovalentaria	ANCESTRAL SPECIES	3							ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00390000014244	ENSGT00930000151788	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00730000112261
Atherinomorphae	ANCESTRAL SPECIES								ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00390000014244	ENSGT00930000151788	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00730000112261	ENSGT00940000159740
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Oryzias_a	ANCESTRAL SPECIES	106								ENSGT00390000002390.b.e	ENSGT00390000012355.B.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00940000153801.b	ENSGT00390000014801	ENSGT01030000234542.b.a.a.a.b	ENSGT00940000158341.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572.o	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b
Chinese medaka	MODERN SPECIES	1221																ENSOSIG00000022397 ##22	ENSOSIG00000022402
Cyprinodontiformes	ANCESTRAL SPECIES	60							ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00730000112261	ENSGT00940000159740	ENSGT00390000017282	ENSGT00940000156985.g	ENSGT00940000160806
Cyprinodontoidei	ANCESTRAL SPECIES								ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000160806	ENSGT00940000156985.g	ENSGT00390000017282	ENSGT00940000159740	ENSGT00730000112261	ENSGT00940000164585.c.b	ENSGT00950000182907.a.a.ic.b	ENSGT00530000063760.b.g.a	ENSGT00940000162345.c.a
Poeciliinae	ANCESTRAL SPECIES	49							ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000160806	ENSGT00940000156985.g	ENSGT00390000017282	ENSGT00940000159740	ENSGT00730000112261	ENSGT00940000164585.c.b	ENSGT00950000182907.a.a.ic.b	ENSGT00530000063760.b.g.a	ENSGT00940000162345.c.a
Poecilia	ANCESTRAL SPECIES	49	ENSGT01020000230346.D	ENSGT00390000018560.a.a.a.a.a	ENSGT00940000161007	ENSGT00390000018560.a.a.b	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000160806	ENSGT00940000156985.g	ENSGT00390000017282.e	ENSGT00390000017282.f	ENSGT00940000159740	ENSGT00730000112261	ENSGT00940000164585.c.b	ENSGT00950000182907.a.a.ic.b	ENSGT00530000063760.b.g.a
Guppy	MODERN SPECIES	446	si:ch211-225p5.8 (ENSPREG00000016374)	ENSPREG00000016360	dnajc28 (ENSPREG00000016352)	ENSPREG00000016335	ENSPREG00000016312	ENSPREG00000016099	TMEM79 (ENSPREG00000016024)	ARHGEF2 (ENSPREG00000015997)	ENSPREG00000015979	ENSPREG00000015954	PMVK (ENSPREG00000015937)	decr1 (ENSPREG00000015904)	ENSPREG00000015874	ANKRD34A (ENSPREG00000015859)	iqgap3 (ENSPREG00000015764)	ENSPREG00000015724 ##22	ENSPREG00000015708	ENSPREG00000015671	ENSPREG00000015562	ENSPREG00000015531	bnipl (ENSPREG00000015516)	prune (ENSPREG00000015505)	myo1eb (ENSPREG00000015453)	ENSPREG00000015430	ENSPREG00000015400	CREB3L4 (ENSPREG00000015382)	NPR2 (ENSPREG00000015307)	ENSPREG00000015289	gbp (ENSPREG00000015267)	KCNV1 (ENSPREG00000015244)	ENSPREG00000015227
NAME_6	ANCESTRAL SPECIES	335								ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT00940000158522.l
Amazon molly	MODERN SPECIES	965								TMEM79 (ENSPFOG00000008284)	ARHGEF2 (ENSPFOG00000008309)	ENSPFOG00000008497	pmvk (ENSPFOG00000008505)	decr1 (ENSPFOG00000008560)	ENSPFOG00000008676	ANKRD34A (ENSPFOG00000019951)	iqgap3 (ENSPFOG00000008764)	ENSPFOG00000024438 ##22	ENSPFOG00000009411	ENSPFOG00000009454
Sailfin molly	MODERN SPECIES	2941																ENSPLAG00000018942 ##22	ENSPLAG00000018936	ENSPLAG00000018935	ENSPLAG00000018896
Platyfish	MODERN SPECIES	17					ENSXMAG00000004938	ENSXMAG00000017863	ENSXMAG00000026727	ENSXMAG00000029673	ARHGEF2 (ENSXMAG00000017818)	ENSXMAG00000000322	pmvk (ENSXMAG00000027451)	decr1 (ENSXMAG00000000326)	pnp4b (ENSXMAG00000025423)	ANKRD34A (ENSXMAG00000027957)	iqgap3 (ENSXMAG00000000334)	ENSXMAG00000025543 ##22	ENSXMAG00000004972	ENSXMAG00000017312	ENSXMAG00000008638	ENSXMAG00000004870	bnipl (ENSXMAG00000004860)	prune (ENSXMAG00000024549)	myo1eb (ENSXMAG00000004840)	ENSXMAG00000001304	CREB3L4 (ENSXMAG00000001292)	NPR2 (ENSXMAG00000001184)	ENSXMAG00000024862	dek (ENSXMAG00000001162)	KCNV1 (ENSXMAG00000001158)	gbp (ENSXMAG00000025221)	ENSXMAG00000000346
Aplocheiloidei	ANCESTRAL SPECIES	247										ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B
Turquoise killifish	MODERN SPECIES	1614	BBS9 (ENSNFUG00015020254)	nt5c3a (ENSNFUG00015020240)	DCTN3 (ENSNFUG00015020234)	ATG5 (ENSNFUG00015020219)	prdm1a (ENSNFUG00015020207)	ENSNFUG00015020206	ENSNFUG00015020194	ENSNFUG00015020191	ARHGEF2 (ENSNFUG00015019974)	Nfu_g_1_010950 (ENSNFUG00015019938)	PMVK (ENSNFUG00015019934)	DECR1 (ENSNFUG00015019875)	PNP4B (ENSNFUG00015019852)	ANKRD34A (ENSNFUG00015019848)	iqgap3 (ENSNFUG00015019692)	ENSNFUG00015019623 ##22	ENSNFUG00015019610	ENSNFUG00015019592	ENSNFUG00015019591	ENSNFUG00015019497	tlr18 (ENSNFUG00015019483)	Nfu_g_1_010954 (ENSNFUG00015019469)	lingo4b (ENSNFUG00015019464)	CTSK (ENSNFUG00015019460)	CTSS (ENSNFUG00015019454)	onecutl (ENSNFUG00015019449)	hormad1 (ENSNFUG00015019441)	ensab (ENSNFUG00015019438)	TMOD4 (ENSNFUG00015019435)	MCL1B (ENSNFUG00015019428)	SCNM1 (ENSNFUG00015019426)
Ovalentaria_B	ANCESTRAL SPECIES	1						ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00950000182991.A.a.c.a.b	ENSGT00390000012355.B.b	ENSGT01010000223208	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00930000151788	ENSGT00940000162345.c.a	ENSGT00530000063760.b.g.a	ENSGT00950000182907.a.a.ic.b	ENSGT00940000164585.c.b	ENSGT00730000112261	ENSGT00940000159740
Cichlidae	ANCESTRAL SPECIES	9								ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00930000151788	ENSGT00940000162345.c.a	ENSGT00940000156985.g	ENSGT00390000017282	ENSGT00940000159740	ENSGT00730000112261	ENSGT00940000164585.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	2								ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00390000014244.f	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00940000156985.g	ENSGT00390000017282	ENSGT00940000159740	ENSGT00730000112261
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1								ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00390000014244.f	ENSGT00940000163854.a.a	ENSGT00940000162345.c.a	ENSGT00940000156985.g	ENSGT00390000017282	ENSGT00940000159740	ENSGT00730000112261
Haplochromini	ANCESTRAL SPECIES	6								ENSGT00940000164105.a	ENSGT00390000002390.b.e	ENSGT00940000158341.b	ENSGT01030000234542.b.a.a.a.b	ENSGT00390000014801	ENSGT00940000153801.b	ENSGT00390000012355.B.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000166061.a ##22	ENSGT01050000244841.A.a.a.a.c.b	ENSGT00940000164559.B	ENSGT00940000169539	ENSGT01100000263475.f.a	ENSGT00940000158522.l	ENSGT00940000165419.a	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00390000014244.f	ENSGT00940000163854.a.a	ENSGT00940000165893	ENSGT00940000162345.c.a	ENSGT00940000156985.g	ENSGT00390000017282	ENSGT00940000159740
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Eastern happy	MODERN SPECIES	2						ENSACLG00000016779	gon4lb (ENSACLG00000016597)	ENSACLG00000016581	ENSACLG00000016555	ARHGEF2 (ENSACLG00000016510)	ENSACLG00000016463	pmvk (ENSACLG00000016380)	decr1 (ENSACLG00000016349)	ANKRD34A (ENSACLG00000016294)	iqgap3 (ENSACLG00000016229)	ENSACLG00000016192 ##22	ENSACLG00000016184	ENSACLG00000016144	ENSACLG00000016098	ENSACLG00000016072	ENSACLG00000016057	TXNIP (ENSACLG00000016037)	ENSACLG00000016027	bnipl (ENSACLG00000016013)	prune (ENSACLG00000015998)	myo1eb (ENSACLG00000015892)	ENSACLG00000015878	ENSACLG00000015787	ENSACLG00000015699	pogzb (ENSACLG00000015585)	ENSACLG00000015532
Burton s mouthbrooder	MODERN SPECIES	463							ENSHBUG00000010418	ARHGEF2 (ENSHBUG00000000277)	ENSHBUG00000010192	pmvk (ENSHBUG00000010131)	decr1 (ENSHBUG00000010123)	ANKRD34A (ENSHBUG00000010091)	ENSHBUG00000010076	ENSHBUG00000010064	iqgap3 (ENSHBUG00000010026)	ENSHBUG00000009975 ##22	ENSHBUG00000009970	ENSHBUG00000009946	ENSHBUG00000009915	ENSHBUG00000009884	TXNIP (ENSHBUG00000009878)	bnipl (ENSHBUG00000009861)	prune (ENSHBUG00000009792)	myo1eb (ENSHBUG00000009544)	ENSHBUG00000009465	ENSHBUG00000009379	pogzb (ENSHBUG00000009369)	ENSHBUG00000009354	ENSHBUG00000009341	ENSHBUG00000009308	ENSHBUG00000009243
Nile tilapia	MODERN SPECIES	2	gon4lb (ENSONIG00000001376)	ENSONIG00000034951	ENSONIG00000029734	ENSONIG00000040751	ARHGEF2 (ENSONIG00000001384)	ENSONIG00000001398	pmvk (ENSONIG00000001404)	decr1 (ENSONIG00000001407)	ENSONIG00000040615	ANKRD34A (ENSONIG00000020954)	ENSONIG00000001408	ENSONIG00000033607	ENSONIG00000038310	ENSONIG00000035618	iqgap3 (ENSONIG00000001410)	ENSONIG00000001451 ##22	ENSONIG00000001452	ENSONIG00000001455	ENSONIG00000001460	ENSONIG00000033499	ENSONIG00000001466	ENSONIG00000030805	ENSONIG00000043071	TXNIP (ENSONIG00000001467)	bnipl (ENSONIG00000001474)	prune (ENSONIG00000001484)	myo1eb (ENSONIG00000001490)	ENSONIG00000001510	selenbp1 (ENSONIG00000001513)	pogzb (ENSONIG00000038442)	ENSONIG00000001518
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Spiny chromis	MODERN SPECIES	2753															iqgap3 (ENSAPOG00000014180)	ENSAPOG00000013961 ##22
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005015104	ENSMMDG00005015109	mrps12 (ENSMMDG00005015112)	zgc:153896 (ENSMMDG00005015113)	ENSMMDG00005015197	ENSMMDG00005019634	ENSMMDG00005019635	ENSMMDG00005019638	ENSMMDG00005019642	ENSMMDG00005019645	ENSMMDG00005019646	ENSMMDG00005019648	ENSMMDG00005019650	plin6 (ENSMMDG00005019652)	syt11b (ENSMMDG00005019657)	ENSMMDG00005019673 ##22	ENSMMDG00005019675	ENSMMDG00005019690	ENSMMDG00005019696	pnp4b (ENSMMDG00005019704)	ENSMMDG00005019707	decr1 (ENSMMDG00005019717)	pmvk (ENSMMDG00005019747)	ENSMMDG00005019749	ARHGEF2 (ENSMMDG00005019760)	ENSMMDG00005019905	gon4lb (ENSMMDG00005019914)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Asian bonytongue	MODERN SPECIES	9	ENSSFOG00015010364	ENSSFOG00015033221	ENSSFOG00015010412	ENSSFOG00015010478	dnase1l4.2 (ENSSFOG00015010534)	ENSSFOG00015010582	ENSSFOG00015028279	nudt17 (ENSSFOG00015010598)	mtx1a (ENSSFOG00015027994)	THBS3 (ENSSFOG00015010682)	txnipb (ENSSFOG00015010782)	ENSSFOG00015010803	ANKRD34A (ENSSFOG00015033343)	GATAD2B (ENSSFOG00015010862)	iqgap3 (ENSSFOG00015010927)	ENSSFOG00015011019 ##22	gnrhr1 (ENSSFOG00015011063)	ENSSFOG00015011084	DENND4B (ENSSFOG00015011137)	ENSSFOG00015024682	SLC39A1 (ENSSFOG00015029511)	CREB3L4 (ENSSFOG00015011269)	JTB (ENSSFOG00015032030)	ENSSFOG00015011298	anp32e (ENSSFOG00015011316)	plekho1a (ENSSFOG00015011333)	vps45 (ENSSFOG00015011366)	ENSSFOG00015011417	pogzb (ENSSFOG00015011489)	selenbp1 (ENSSFOG00015011561)	pi4kb (ENSSFOG00015011584)
Spotted gar	MODERN SPECIES	669	ENSLOCG00000013465	ENSLOCG00000017945	dnaaf4 (ENSLOCG00000013474)	pygo1 (ENSLOCG00000013476)	PRTG (ENSLOCG00000013480)	nedd4a (ENSLOCG00000013489)	RFX7 (ENSLOCG00000013505)	tex9 (ENSLOCG00000013508)	mns1 (ENSLOCG00000013519)	ENSLOCG00000013531	tcf12 (ENSLOCG00000013539)	CGNL1 (ENSLOCG00000013547)	MYZAP (ENSLOCG00000013563)	aldh1a2 (ENSLOCG00000013574)	aqp9b (ENSLOCG00000013583)	ENSLOCG00000013591 ##22	lipca (ENSLOCG00000013598)	adam10a (ENSLOCG00000013609)	MINDY2 (ENSLOCG00000013626)	sltm (ENSLOCG00000013629)	rnf111 (ENSLOCG00000013642)	ccnb2 (ENSLOCG00000013651)	MYO1E (ENSLOCG00000013657)	FAM81A (ENSLOCG00000013668)	mtmr10 (ENSLOCG00000013672)	fan1 (ENSLOCG00000013674)	mphosph10 (ENSLOCG00000013681)	mcee (ENSLOCG00000013690)	APBA2 (ENSLOCG00000013693)	ENTREP2 (ENSLOCG00000013697)	TJP1 (ENSLOCG00000013706)
Sarcopterygii	ANCESTRAL SPECIES	98	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00940000176052	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000158889	ENSGT00940000163854.b	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000164516	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000154617.B
Coelacanth	MODERN SPECIES	695											TCF12 (ENSLACG00000014145)	CGNL1 (ENSLACG00000013518)	MYZAP (ENSLACG00000012652)	ALDH1A2 (ENSLACG00000011494)	AQP9 (ENSLACG00000022342)	ENSLACG00000010253 ##22	LIPC (ENSLACG00000009964)	adam10a (ENSLACG00000007565)	MINDY2 (ENSLACG00000006574)	SLTM (ENSLACG00000005234)	RNF111 (ENSLACG00000003109)	ccnb2 (ENSLACG00000002466)
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00390000004930	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00940000176052	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000166322	ENSGT00940000157011	ENSGT00940000159103	ENSGT00950000183113.b.a	ENSGT00940000158389
Anura	ANCESTRAL SPECIES		ENSGT00940000154745.b	ENSGT00390000004930	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405.rb.a	ENSGT00940000155405.rb.b	ENSGT00940000157461	ENSGT00940000154617.B
Frog	MODERN SPECIES	3	dnaaf4 (ENSXETG00000007369)	prtg (ENSXETG00000041045)	nedd4 (ENSXETG00000016554)	rfx7 (ENSXETG00000024544)	tex9 (ENSXETG00000024543)	mns1 (ENSXETG00000016556)	znf280d (ENSXETG00000016560)	ENSXETG00000039109	ENSXETG00000040376	tcf12 (ENSXETG00000016563)	cgnl1 (ENSXETG00000010876)	myzap (ENSXETG00000040770)	polr2m (ENSXETG00000036763)	aldh1a2 (ENSXETG00000010865)	aqp9 (ENSXETG00000010861)	ENSXETG00000042238 ##22	ENSXETG00000044321	lipc (ENSXETG00000032604)	adam10 (ENSXETG00000010850)	mindy2 (ENSXETG00000010848)	ccnb2 (ENSXETG00000010845)	rnf111 (ENSXETG00000010842)	ENSXETG00000039400	sltm (ENSXETG00000010840)	ENSXETG00000043724	ENSXETG00000048015	ENSXETG00000042363	myo1e.1 (ENSXETG00000016402)	ENSXETG00000043220	chrna7 (ENSXETG00000016395)	bmp7.2 (ENSXETG00000016386)
Leishan spiny toad	MODERN SPECIES	6	THSD4 (ENSLLEG00000005118)	ENSLLEG00000005160	ENSLLEG00000005217	ENSLLEG00000005459	ENSLLEG00000005491	CGNL1 (ENSLLEG00000005559)	ENSLLEG00000005974	ENSLLEG00000005990	MYZAP (ENSLLEG00000006013)	ENSLLEG00000006151	POLR2M (ENSLLEG00000006174)	ENSLLEG00000006200	ALDH1A2 (ENSLLEG00000006213)	ENSLLEG00000006275	AQP9 (ENSLLEG00000006293)	ENSLLEG00000006332 ##22	ENSLLEG00000006365	LIPC (ENSLLEG00000006398)	ENSLLEG00000006525	ADAM10 (ENSLLEG00000006661)	ENSLLEG00000008265	MINDY2 (ENSLLEG00000008298)	SLTM (ENSLLEG00000008552)	RNF111 (ENSLLEG00000009389)	ENSLLEG00000009565	ENSLLEG00000009801	ENSLLEG00000009845	MYO1E (ENSLLEG00000010104)	TMEM215 (ENSLLEG00000010622)	TOPORS (ENSLLEG00000010643)	ENSLLEG00000010672
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00910000148328	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000166322	ENSGT00940000157011	ENSGT00940000159103	ENSGT00950000183113.b.a	ENSGT00940000158389
Sauria	ANCESTRAL SPECIES	10	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00910000148328	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000175332	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000157011	ENSGT00940000159103	ENSGT00950000183113.b.a	ENSGT00940000158389	ENSGT00940000159348.f
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b
Episquamata	ANCESTRAL SPECIES	9	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905.ab	ENSGT01050000244970.b	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b	ENSGT00940000155907.b	ENSGT00390000003748	ENSGT00940000157850	ENSGT00940000159282	ENSGT00940000155363
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000166061.a ##22
Lizard	MODERN SPECIES	418																ENSACAG00000037443 ##22
Laterata	ANCESTRAL SPECIES	33	ENSGT00970000193985	ENSGT00390000004930	ENSGT00530000063948.b	ENSGT00940000155943.a	ENSGT00940000158905.ab	ENSGT01050000244970.b	ENSGT00390000018333	ENSGT00730000111210	ENSGT00940000158889	ENSGT00940000155047	ENSGT00940000154489.A	ENSGT00950000183065.A	ENSGT00950000183065.D	ENSGT00940000158898	ENSGT00940000160582	ENSGT00940000166061.a ##22	ENSGT00940000157602	ENSGT00940000160579	ENSGT00390000016607.a	ENSGT00940000156573	ENSGT00940000157691	ENSGT00940000155405	ENSGT00940000157461	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b	ENSGT00940000153424.a.a.d	ENSGT00940000155907.b	ENSGT00390000003748	ENSGT00940000157850	ENSGT00940000159282
Common wall lizard	MODERN SPECIES	5	CCPG1 (ENSPMRG00000023523)	ENSPMRG00000023520	DNAAF4 (ENSPMRG00000023517)	PYGO1 (ENSPMRG00000023516)	PRTG (ENSPMRG00000023506)	NEDD4 (ENSPMRG00000023493)	RFX7 (ENSPMRG00000023486)	TEX9 (ENSPMRG00000023481)	MNS1 (ENSPMRG00000023479)	ZNF280D (ENSPMRG00000023475)	TCF12 (ENSPMRG00000023467)	ENSPMRG00000023461	ENSPMRG00000023457	ENSPMRG00000023456	AQP9 (ENSPMRG00000023453)	ENSPMRG00000023449 ##22	ENSPMRG00000023445	LIPC (ENSPMRG00000023441)	ADAM10 (ENSPMRG00000023435)	MINDY2 (ENSPMRG00000023430)	SLTM (ENSPMRG00000023425)	RNF111 (ENSPMRG00000023421)	CCNB2 (ENSPMRG00000023416)	MYO1E (ENSPMRG00000023361)	FAM81A (ENSPMRG00000023319)	TBC1D2B (ENSPMRG00000023313)	DAPK2 (ENSPMRG00000023290)	HERC1 (ENSPMRG00000023186)	FBXL22 (ENSPMRG00000023165)	USP3 (ENSPMRG00000023033)	CA12 (ENSPMRG00000022998)