Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000166176 #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000166176 #22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000166176 #22
Neopterygii	ANCESTRAL SPECIES	435													ENSGT00390000009004	ENSGT00940000155898	ENSGT00940000159553	ENSGT00940000166176 #22	ENSGT00940000160629 #23
Osteoglossocephalai	ANCESTRAL SPECIES	417														ENSGT00940000165390.b #16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629 #23	ENSGT00940000158761	ENSGT00940000154903	ENSGT00530000063787.A
Clupeocephala	ANCESTRAL SPECIES	32									ENSGT00940000156324.f.b	ENSGT01050000244823.d.a.a.b	ENSGT00940000155521.a.b	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000165390.b.c.b ##16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000159217
Otomorpha	ANCESTRAL SPECIES	70	ENSGT00940000155521.a.b	ENSGT00940000174500	ENSGT00950000185626	ENSGT01060000248588.a.c.a.b	ENSGT00390000009004.c	ENSGT00940000155898.q	ENSGT00940000159553.a	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00940000166432.c.b.b.a	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000165390.b.d #16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000159217
Otophysi	ANCESTRAL SPECIES	18	ENSGT00940000155521.a.b	ENSGT00940000174500	ENSGT01060000248588.a.c.a.b	ENSGT00390000009004.c	ENSGT00940000155898.q	ENSGT00940000159553.a	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00940000166432.d.g	ENSGT00940000178703	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000165390.b.c.b ##16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000174541.b	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e
Cyprinoidei	ANCESTRAL SPECIES	6	ENSGT00940000158782.d.b	ENSGT00940000155521.a.b	ENSGT00940000174500	ENSGT01060000248588.a.c.a.b	ENSGT00390000009004.c	ENSGT00940000155898.q	ENSGT00940000159553.a	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00940000166432.c.b.b.a.b.b.b	ENSGT00940000167565 #15	ENSGT00940000165390.b.d.h ##16	ENSGT00940000165390.b.d.g.b #16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000174541.b	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000176904.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	778														ENSGT00940000165390.b.d.h ##16	ENSGT00940000158048.d.c #21	ENSGT00940000166176.b #22	ENSGT00940000160629.a.d #23	ENSGT00940000166282.B.b #24	ENSGT00940000163701.b.a.a.a.b.e.a #25	ENSGT00940000163701.b.a.b.d.b #27	ENSGT00940000163701.b.a.b.d.a ##25	ENSGT00940000160672.a ##28	ENSGT00940000158058.b.k.a #29
Cyprininae_a	ANCESTRAL SPECIES	231		ENSGT00940000164173.b.a.d	ENSGT00940000160554.a.b	ENSGT00940000166432.c.b.b.a.b.b.b	ENSGT00940000166432.c.b.b.a.b.a	ENSGT00940000165759.f.c.b #7	ENSGT00940000164468.a.a.b.b.f.d.b.a #8	ENSGT00940000164468.a.a.b.b.f.d.b.b #9	ENSGT00940000164468.a.b.b.b.a #11	ENSGT00940000164983.c.a.a.b.b #12	ENSGT00940000164983.c.a.a.a.a.a.a #13	ENSGT00940000167565.b #15	ENSGT00940000165390.b.d.g.b.b #16	ENSGT00940000165390.b.d.g.b.a.a.a.a #19	ENSGT00940000158048.d.c #21	ENSGT00940000166176.b #22	ENSGT00940000160629.a.d #23	ENSGT00940000166282.B.b #24	ENSGT00940000163701.b.a.a.a.b.e.a #25	ENSGT00940000163701.b.a.a.a.b.f.b #26	ENSGT00940000163701.b.a.b.d.b #27	ENSGT00940000163701.b.a.b.d.a ##25	ENSGT00940000174541.b	ENSGT00940000160672.b.a #28	ENSGT00940000158058.b.k.a #29	ENSGT00940000158058.b.l ##29	ENSGT00940000166430.c	ENSGT00390000017226.k.a	ENSGT01030000234592.A.b.b.a.b.a.b.c.b	ENSGT01030000234592.A.b.b.a.b.b.b.a	ENSGT00940000159845.a.b.b
Golden-line barbel	MODERN SPECIES	439	ENSSGRG00000055366 #7	ENSSGRG00000055365 #8	ENSSGRG00000055364 #9	ENSSGRG00000055363 #10	ENSSGRG00000055362 #11	pcdh1g22 (ENSSGRG00000055361) #12	ENSSGRG00000055360 #13	pcdh1gc5 (ENSSGRG00000055359) #14	hrh2b (ENSSGRG00000055356) #15	ENSSGRG00000055355 #16	ENSSGRG00000055354 #17	ENSSGRG00000055353 #18	ENSSGRG00000055352 #19	ENSSGRG00000055350 #20	kcnip1b (ENSSGRG00000055348) #21	npm1a (ENSSGRG00000055347) #22	tlx3b (ENSSGRG00000055346) #23	ugt5g2 (ENSSGRG00000055345) #24	ENSSGRG00000055344 #25	ENSSGRG00000055339 #26	ponzr2 (ENSSGRG00000055338) #27	cldn7b (ENSSGRG00000055336) #28	ENSSGRG00000055335 #29
Common carp reference	MODERN SPECIES	24	fbxw11b (ENSCCRG00000005117)	fgf18b (ENSCCRG00000066307)	ENSCCRG00000005098	ENSCCRG00000081101	ENSCCRG00000005080	ENSCCRG00000026899	ENSCCRG00000026895	pcdh1a6 (ENSCCRG00000071127)	ENSCCRG00000058111 ##7	cbln17 (ENSCCRG00000080170)	ENSCCRG00000038102	hrh2b (ENSCCRG00000038098) #15	ENSCCRG00000050194 #16	ENSCCRG00000061744 #19	kcnip1b (ENSCCRG00000075219) #21	npm1a (ENSCCRG00000068283) #22	tlx3b (ENSCCRG00000049801) #23	ugt5g2 (ENSCCRG00000026507) #24	ENSCCRG00000026513 #25	ENSCCRG00000026564 #26	ponzr2 (ENSCCRG00000049807) #27	ponzr2 (ENSCCRG00000068605) ##25	ENSCCRG00000078150	cldn7b (ENSCCRG00000049811) #28	ENSCCRG00000075872 #29	nlgn2b (ENSCCRG00000064856)	epob (ENSCCRG00000056696)	ENSCCRG00000053626	zgc:172339 (ENSCCRG00000082842)	ENSCCRG00000019477	ENSCCRG00000058557
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	ENSCARG00000012707	cbln17 (ENSCARG00000012715)	ENSCARG00000012732 #13	ENSCARG00000012788 ##12	pcdh1gc5 (ENSCARG00000012793) #14	ENSCARG00000012797 ##12	ENSCARG00000012801 ##12	ENSCARG00000012803 #11	ENSCARG00000012806 #8	loxl2a (ENSCARG00000012846)	golga7 (ENSCARG00000013252)	ENSCARG00000013262 #16	ENSCARG00000013284 ##16	ENSCARG00000013345 ##16	kcnip1b (ENSCARG00000013351) #21	npm1a (ENSCARG00000013362) #22	tlx3b (ENSCARG00000013368) #23	ENSCARG00000013373 #25	ponzr2 (ENSCARG00000013370) #27	ponzr2 (ENSCARG00000013377) ##25	cldn7b (ENSCARG00000013380) ##28	ENSCARG00000013387 #29	ENSCARG00000013390	ENSCARG00000013392	ENSCARG00000013396	ENSCARG00000013401	ENSCARG00000013404	ENSCARG00000013412	fgf18b (ENSCARG00000013420)	fbxw11b (ENSCARG00000013466)	etf1b (ENSCARG00000014436)
Goldfish	MODERN SPECIES	2952														ENSCARG00000061919 ##16	kcnip1b (ENSCARG00000061956) #21	npm1a (ENSCARG00000062032) #22
Cyprininae	ANCESTRAL SPECIES	333													ENSGT00940000167565.a ##15	ENSGT00940000165390.b.d.g.b.a.a.b ##16	ENSGT00940000158048.d.d ##21	ENSGT00940000166176.a ##22	ENSGT00940000160629.a.c ##23	ENSGT00940000166282.B.a ##24	ENSGT00940000163701.b.a.a.a.b.e.b ##25	ENSGT00940000163701.b.a.a.a.b.f #26	ENSGT00940000163701.b.a.b.c ##25	ENSGT00940000160672.b #28	ENSGT00940000158058.b.k.b ##29	ENSGT00940000166430.d	ENSGT00390000017226.k.b	ENSGT01030000234592.A.b.b.a.b.a.b.c.a	ENSGT01030000234592.A.b.b.a.b.b.b.b	ENSGT00940000159845.a.b.a	ENSGT00940000160323.a.b.b	ENSGT00940000160414.d.c	ENSGT00940000163776.a.b.d
Cyprininae_a	ANCESTRAL SPECIES	293												ENSGT00940000167565.a ##15	ENSGT00940000165390.b.d.g.b.a.a.b ##16	ENSGT00940000165390.b.c.b ##16	ENSGT00940000158048.d.d ##21	ENSGT00940000166176.a ##22	ENSGT00940000160629.a.c ##23	ENSGT00940000166282.B.a ##24	ENSGT00940000163701.b.a.a.a.b.e.b ##25	ENSGT00940000163701.b.a.a.a.b.f.a ##25	ENSGT00940000163701.b.a.b.c ##25	ENSGT00940000160672.a ##28	ENSGT00940000160672.b.b ##28	ENSGT00940000158058.b.k.b ##29	ENSGT00940000166430.d	ENSGT00390000017226.k.b	ENSGT01030000234592.A.b.b.a.b.a.b.c.a	ENSGT01030000234592.A.b.b.a.b.b.b.b	ENSGT00940000159845.a.b.a	ENSGT00940000160323.a.b.b	ENSGT00940000160414.d.c
Common carp reference	MODERN SPECIES	32	ENSCCRG00000081151	avd (ENSCCRG00000038982)	etf1b (ENSCCRG00000031059)	fbxw11b (ENSCCRG00000017773)	fgf18b (ENSCCRG00000064499)	ENSCCRG00000007274	ENSCCRG00000003523	ENSCCRG00000080636 ##8	pcdh1g31 (ENSCCRG00000055289) ##12	ENSCCRG00000044558	hrh2b (ENSCCRG00000044553) ##15	ENSCCRG00000044543 ##16	ENSCCRG00000024545 ##16	ENSCCRG00000082198	kcnip1b (ENSCCRG00000073511) ##21	npm1a (ENSCCRG00000068898) ##22	ENSCCRG00000076971	tlx3b (ENSCCRG00000024597) ##23	ENSCCRG00000078589 ##25	ENSCCRG00000067679 ##25	ponzr2 (ENSCCRG00000073185) ##25	cldn7b (ENSCCRG00000058719) ##28	ENSCCRG00000069985 ##29	nlgn2b (ENSCCRG00000020748)	epob (ENSCCRG00000019487)	ENSCCRG00000019473	zgc:172339 (ENSCCRG00000042141)	ENSCCRG00000067150	ENSCCRG00000071610	kdm6bb (ENSCCRG00000058827)	tmem88a (ENSCCRG00000064126)
Golden-line barbel	MODERN SPECIES	77	ENSSGRG00000047630	ENSSGRG00000047631	ENSSGRG00000047632	ENSSGRG00000047635 ##8	ENSSGRG00000047636 ##8	ENSSGRG00000047641 ##8	ENSSGRG00000047642 ##12	cbln17 (ENSSGRG00000047643)	ENSSGRG00000047644	hrh2b (ENSSGRG00000047645) ##15	ENSSGRG00000047646 ##16	ENSSGRG00000047659 ##16	ENSSGRG00000047661 ##16	ENSSGRG00000047668 ##16	kcnip1b (ENSSGRG00000047669) ##21	npm1a (ENSSGRG00000047679) ##22	tlx3b (ENSSGRG00000047680) ##23	ugt5g2 (ENSSGRG00000047682) ##24	ENSSGRG00000047684 ##25	ENSSGRG00000047690 ##25	cldn7b (ENSSGRG00000047702) ##28	ENSSGRG00000047705 ##29	nlgn2b (ENSSGRG00000047711)	epob (ENSSGRG00000047999)	ENSSGRG00000048000	zgc:172339 (ENSSGRG00000048001)	GIGYF1 (ENSSGRG00000048003)	ENSSGRG00000048007	kdm6bb (ENSSGRG00000048008)	tmem88a (ENSSGRG00000048010)	pcolcea (ENSSGRG00000048012)
Goldfish	MODERN SPECIES	28	tjp2a (ENSCARG00000019398)	ENSCARG00000022951	MAMDC2 (ENSCARG00000022963)	zfand5b (ENSCARG00000023005)	erbin (ENSCARG00000023042)	nln (ENSCARG00000023676)	sgtb (ENSCARG00000024701)	trappc13 (ENSCARG00000024749)	pum3 (ENSCARG00000024944)	KCNV2 (ENSCARG00000025308)	vldlr (ENSCARG00000025678)	ENSCARG00000040388	hrh2b (ENSCARG00000040399) ##15	ENSCARG00000040442 ##16	kcnip1b (ENSCARG00000040653) ##21	npm1a (ENSCARG00000040800) ##22	tlx3b (ENSCARG00000040816) ##23	ugt5g2 (ENSCARG00000040831) ##24	ENSCARG00000040842 ##25	ENSCARG00000040881 #26	ponzr2 (ENSCARG00000040893) ##25	cldn7b (ENSCARG00000040904) #28	ENSCARG00000040916 ##29	nlgn2b (ENSCARG00000040995)	ENSCARG00000041626	zgc:172339 (ENSCARG00000041632)	GIGYF1 (ENSCARG00000041644)	ENSCARG00000041698	kdm6bb (ENSCARG00000041723)	tmem88a (ENSCARG00000041885)	pcolcea (ENSCARG00000041907)
Zebrafish	MODERN SPECIES	1	pcdh1g18 (ENSDARG00000099447) #11	pcdh1g33 (ENSDARG00000099035) #13	pcdh1g26 (ENSDARG00000099931) ##12	pcdh1gc5 (ENSDARG00000104826) #14	pcdh1gc6 (ENSDARG00000103950) ##12	pcdh1g29 (ENSDARG00000104497) ##12	pcdh1g30 (ENSDARG00000101865) ##12	pcdh1g31 (ENSDARG00000100670) ##12	pcdh1g32 (ENSDARG00000100829)	ENSDARG00000112040	cbln17 (ENSDARG00000088911)	hrh2b (ENSDARG00000057479) #15	ENSDARG00000112454 #16	ENSDARG00000107280 ##16	kcnip1b (ENSDARG00000034808) #21	npm1a (ENSDARG00000014329) #22	tlx3b (ENSDARG00000017615) #23	ugt5g2 (ENSDARG00000043901) #24	ENSDARG00000087764 #25	ENSDARG00000109946 #25	ENSDARG00000008182	ponzr2 (ENSDARG00000088539) #27	ENSDARG00000097477	cldn7b (ENSDARG00000014047) #28	ENSDARG00000043907 #29	nlgn2b (ENSDARG00000079251)	epob (ENSDARG00000100737)	ENSDARG00000117144	zgc:172339 (ENSDARG00000069190)	GIGYF1 (ENSDARG00000078691)	ENSDARG00000112993
Characiphysae	ANCESTRAL SPECIES	42	ENSGT00940000174500	ENSGT01060000248588.a.c.a.b	ENSGT00390000009004.c	ENSGT00940000158371	ENSGT00390000009004.d	ENSGT00940000155898.r	ENSGT00940000159553.a	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000164173.a.b	ENSGT00940000164173.b.a.c.b	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000165390.b.d #16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000174541.b	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e
Channel catfish	MODERN SPECIES	7	ENSIPUG00000020022	ENSIPUG00000020016	ENSIPUG00000020006	ENSIPUG00000019966 #7	ENSIPUG00000019960 #8	ENSIPUG00000019943 #8	ENSIPUG00000019937	pcdh1gc5 (ENSIPUG00000019913) ##12	ENSIPUG00000019907	ENSIPUG00000019821	ENSIPUG00000019799	HRH2 (ENSIPUG00000019788)	ENSIPUG00000019762 #16	ENSIPUG00000019562 #16	kcnip1b (ENSIPUG00000019503) #21	npm1 (ENSIPUG00000019452) #22	tlx3b (ENSIPUG00000019432) #23	ENSIPUG00000019418 #25	ponzr2 (ENSIPUG00000019403) #27	cldn7b (ENSIPUG00000019390) #28	ENSIPUG00000019379 #29	nlgn2b (ENSIPUG00000019333)	GIGYF1 (ENSIPUG00000019293)	EFNB3 (ENSIPUG00000019274)	kdm6bb (ENSIPUG00000019157)	tmem88a (ENSIPUG00000019150)	pcolcea (ENSIPUG00000019138)	vamp2 (ENSIPUG00000019130)	and3 (ENSIPUG00000019118)	AP4M1 (ENSIPUG00000019060)	foxo1b (ENSIPUG00000019054)
Characiphysae_b	ANCESTRAL SPECIES	79						ENSGT00940000164468.a.a.b.a.a.a.a.a ##8	ENSGT00940000164468.a.b.a.b.e ##8	ENSGT00940000164983.d.b ##12	ENSGT00940000164983.c.a.a.a #13	ENSGT00940000163777.a.j.b	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000165390.b.d #16	ENSGT00940000175544	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000174541.b	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e
Characoidei	ANCESTRAL SPECIES	40	ENSGT00940000164173.b.a.c.b	ENSGT00940000164173.b.a.c.a.b.d	ENSGT00940000164173.b.a.c.a.a.b	ENSGT00940000164173.b.a.c.a.b.c	ENSGT00940000164173.b.a.c.a.a.a	ENSGT00940000160554.a	ENSGT00940000166432.d.g.b.a	ENSGT00940000178703	ENSGT00940000164468.a.a.b.b.f.b.a #8	ENSGT00940000164983.c.a.a.b.b #12	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000165390.b.d #16	ENSGT00940000175544	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000174541.b	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e
Red-bellied piranha	MODERN SPECIES	659					ENSPNAG00000026555	ENSPNAG00000026573	ENSPNAG00000026601	ENSPNAG00000007141	HRH2 (ENSPNAG00000026629)	ENSPNAG00000005029 #16	ENSPNAG00000026750 #16	ENSPNAG00000006145	ENSPNAG00000004111 #16	ENSPNAG00000026804 #16	kcnip1b (ENSPNAG00000026866) #21	npm1a (ENSPNAG00000026891) #22	tlx3b (ENSPNAG00000026910) #23	ugt5g2 (ENSPNAG00000026927) #24	ENSPNAG00000004970 #25	ponzr2 (ENSPNAG00000004150) #27	ENSPNAG00000026957	cldn7b (ENSPNAG00000027073) #28
Mexicana tetra	MODERN SPECIES	12	pcdh1g22 (ENSAMXG00000034249) #12	pcdh1gc5 (ENSAMXG00000034526) ##12	ENSAMXG00000035279	ENSAMXG00000010048	ENSAMXG00000033944	ENSAMXG00000010061	ENSAMXG00000040958	HRH2 (ENSAMXG00000032087)	ENSAMXG00000010091 #16	ENSAMXG00000040407 #16	ENSAMXG00000033777	ENSAMXG00000031328 #16	ENSAMXG00000034384 #16	ENSAMXG00000010127	kcnip1b (ENSAMXG00000033269) #21	npm1a (ENSAMXG00000010155) #22	tlx3b (ENSAMXG00000043493) #23	ENSAMXG00000034892 #25	ENSAMXG00000043487	ponzr2 (ENSAMXG00000038603) #27	ENSAMXG00000043923	ENSAMXG00000041907	ENSAMXG00000032409	cldn7b (ENSAMXG00000043439) #28	ENSAMXG00000029655	ENSAMXG00000010260 #29	nlgn2b (ENSAMXG00000010270)	ENSAMXG00000031254	ENSAMXG00000039541	ENSAMXG00000041670	ENSAMXG00000037150
Electric eel	MODERN SPECIES	667								ENSEEEG00000001402 ##12	ENSEEEG00000001401 #13	ENSEEEG00000001399 #13	pcdh1g32 (ENSEEEG00000001383)	hrh2b (ENSEEEG00000001379) #15	ENSEEEG00000001378 #16	ENSEEEG00000001377	kcnip1b (ENSEEEG00000001376) #21	npm1a (ENSEEEG00000001373) #22	tlx3b (ENSEEEG00000001370) #23	ENSEEEG00000001369 #25	ponzr2 (ENSEEEG00000001368) #27	cldn7b (ENSEEEG00000001364) #28	ENSEEEG00000001359 #29
Clupeiformes	ANCESTRAL SPECIES	165									ENSGT00940000164468.a.b.b.b #11	ENSGT00940000164983.c.a.a.b.a.b ##12	ENSGT00940000163777.a	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000165390.b.d #16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.b #27	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000159217	ENSGT00940000164382.a
Denticle herring	DUPLICATION
Denticle herring	DUPLICATION
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	16	ENSDCDG00000002655	TRPC5 (ENSDCDG00000002650)	alg13 (ENSDCDG00000002634)	ENSDCDG00000002630	dacha (ENSDCDG00000002625)	chm (ENSDCDG00000002621)	ENSDCDG00000002617	stk26 (ENSDCDG00000002601)	map4k6 (ENSDCDG00000002175)	rnf145b (ENSDCDG00000001986)	EBF1 (ENSDCDG00000001962)	CLINT1 (ENSDCDG00000001938)	ENSDCDG00000001931	HRH2 (ENSDCDG00000001925)	ENSDCDG00000001920 #16	npm1a (ENSDCDG00000001918) #22	npm1a (ENSDCDG00000001915) #22	kcnip1b (ENSDCDG00000001912) #21	kcnip1b (ENSDCDG00000001900) #21	npm1a (ENSDCDG00000001887) #22	kcnip1b (ENSDCDG00000001875) #21	npm1a (ENSDCDG00000001867) #22	tlx3b (ENSDCDG00000001860) #23	ugt5g2 (ENSDCDG00000001854) #24	ponzr2 (ENSDCDG00000001848) #27	cldn7b (ENSDCDG00000001842) #28	FGF11 (ENSDCDG00000001836) #29	nlgn2b (ENSDCDG00000001808)	ENSDCDG00000001804	GIGYF1 (ENSDCDG00000001794)	EFNB3 (ENSDCDG00000001783)
Denticle herring	MODERN SPECIES	16	TRPC5 (ENSDCDG00000002650)	alg13 (ENSDCDG00000002634)	ENSDCDG00000002630	dacha (ENSDCDG00000002625)	chm (ENSDCDG00000002621)	ENSDCDG00000002617	stk26 (ENSDCDG00000002601)	map4k6 (ENSDCDG00000002175)	rnf145b (ENSDCDG00000001986)	EBF1 (ENSDCDG00000001962)	CLINT1 (ENSDCDG00000001938)	ENSDCDG00000001931	HRH2 (ENSDCDG00000001925)	ENSDCDG00000001920 #16	npm1a (ENSDCDG00000001918) #22	npm1a (ENSDCDG00000001915) #22	kcnip1b (ENSDCDG00000001912) #21	kcnip1b (ENSDCDG00000001900) #21	npm1a (ENSDCDG00000001887) #22	kcnip1b (ENSDCDG00000001875) #21	npm1a (ENSDCDG00000001867) #22	tlx3b (ENSDCDG00000001860) #23	ugt5g2 (ENSDCDG00000001854) #24	ponzr2 (ENSDCDG00000001848) #27	cldn7b (ENSDCDG00000001842) #28	FGF11 (ENSDCDG00000001836) #29	nlgn2b (ENSDCDG00000001808)	ENSDCDG00000001804	GIGYF1 (ENSDCDG00000001794)	EFNB3 (ENSDCDG00000001783)	kdm6bb (ENSDCDG00000001779)
Denticle herring	MODERN SPECIES	16	dacha (ENSDCDG00000002625)	chm (ENSDCDG00000002621)	ENSDCDG00000002617	stk26 (ENSDCDG00000002601)	map4k6 (ENSDCDG00000002175)	rnf145b (ENSDCDG00000001986)	EBF1 (ENSDCDG00000001962)	CLINT1 (ENSDCDG00000001938)	ENSDCDG00000001931	HRH2 (ENSDCDG00000001925)	ENSDCDG00000001920 #16	npm1a (ENSDCDG00000001918) #22	npm1a (ENSDCDG00000001915) #22	kcnip1b (ENSDCDG00000001912) #21	kcnip1b (ENSDCDG00000001900) #21	npm1a (ENSDCDG00000001887) #22	kcnip1b (ENSDCDG00000001875) #21	npm1a (ENSDCDG00000001867) #22	tlx3b (ENSDCDG00000001860) #23	ugt5g2 (ENSDCDG00000001854) #24	ponzr2 (ENSDCDG00000001848) #27	cldn7b (ENSDCDG00000001842) #28	FGF11 (ENSDCDG00000001836) #29	nlgn2b (ENSDCDG00000001808)	ENSDCDG00000001804	GIGYF1 (ENSDCDG00000001794)	EFNB3 (ENSDCDG00000001783)	kdm6bb (ENSDCDG00000001779)	tmem88a (ENSDCDG00000001778)	pcolcea (ENSDCDG00000001773)	vamp2 (ENSDCDG00000001770)
Denticle herring	MODERN SPECIES	16	ENSDCDG00000002617	stk26 (ENSDCDG00000002601)	map4k6 (ENSDCDG00000002175)	rnf145b (ENSDCDG00000001986)	EBF1 (ENSDCDG00000001962)	CLINT1 (ENSDCDG00000001938)	ENSDCDG00000001931	HRH2 (ENSDCDG00000001925)	ENSDCDG00000001920 #16	npm1a (ENSDCDG00000001918) #22	npm1a (ENSDCDG00000001915) #22	kcnip1b (ENSDCDG00000001912) #21	kcnip1b (ENSDCDG00000001900) #21	npm1a (ENSDCDG00000001887) #22	kcnip1b (ENSDCDG00000001875) #21	npm1a (ENSDCDG00000001867) #22	tlx3b (ENSDCDG00000001860) #23	ugt5g2 (ENSDCDG00000001854) #24	ponzr2 (ENSDCDG00000001848) #27	cldn7b (ENSDCDG00000001842) #28	FGF11 (ENSDCDG00000001836) #29	nlgn2b (ENSDCDG00000001808)	ENSDCDG00000001804	GIGYF1 (ENSDCDG00000001794)	EFNB3 (ENSDCDG00000001783)	kdm6bb (ENSDCDG00000001779)	tmem88a (ENSDCDG00000001778)	pcolcea (ENSDCDG00000001773)	vamp2 (ENSDCDG00000001770)	and3 (ENSDCDG00000001764)	ap4m1 (ENSDCDG00000001744)
Euteleosteomorpha	ANCESTRAL SPECIES	134							ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164173.b.a.c.b	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000162009.a	ENSGT00950000183136.b.a.b	ENSGT00940000166282.A ##24	ENSGT00940000166282.C ##24	ENSGT00940000163701.b.a.a.a.a ##25	ENSGT00940000163701.b.b ##25	ENSGT00940000163701.a ##25	ENSGT00940000174541	ENSGT00940000166258	ENSGT00940000160672 #28	ENSGT00940000158058.b #29
Acanthomorphata	ANCESTRAL SPECIES	53	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430
Euacanthomorphacea	ANCESTRAL SPECIES	19	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00990000204690	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Aplocheiloidei	ANCESTRAL SPECIES	33	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444.j	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Mangrove rivulus	MODERN SPECIES	22	SEZ6 (ENSKMAG00000010135)	lhx1b (ENSKMAG00000010158)	acaca (ENSKMAG00000010202)	tbx2a (ENSKMAG00000010328)	ppm1db (ENSKMAG00000010343)	ROBO1 (ENSKMAG00000010382)	ENSKMAG00000010481	PCDH1 (ENSKMAG00000010555)	ENSKMAG00000010578	ENSKMAG00000010596	ENSKMAG00000010613	PCDHAC2 (ENSKMAG00000010638)	ENSKMAG00000010648	HRH2 (ENSKMAG00000010662)	kcnip1b (ENSKMAG00000010676) #21	npm1a (ENSKMAG00000010709) #22	cldn7b (ENSKMAG00000010737) #28	ENSKMAG00000010766 #29	ENSKMAG00000010787 #29	ENSKMAG00000010799	nlgn2b (ENSKMAG00000010837)	ENSKMAG00000010875	kdm6bb (ENSKMAG00000010892)	tmem88a (ENSKMAG00000010911)	pcolcea (ENSKMAG00000010926)	vamp2 (ENSKMAG00000010946)	mpp1 (ENSKMAG00000010969)	TMLHE (ENSKMAG00000011010)	ENSKMAG00000011032	GABRA3 (ENSKMAG00000011066)	TMEM164 (ENSKMAG00000011090)
Turquoise killifish	MODERN SPECIES	1620	tbx2a (ENSNFUG00015024769)	ppm1db (ENSNFUG00015024772)	ROBO1 (ENSNFUG00015024808)	ENSNFUG00015024915	ROBO2 (ENSNFUG00015024955)	ENSNFUG00015025066	ENSNFUG00015025068	PCDH1A (ENSNFUG00015025071)	ENSNFUG00015025074	PCDH10 (ENSNFUG00015025075)	PCDHAC2 (ENSNFUG00015025077)	PCDHAC2 (ENSNFUG00015025079)	FAM196B (ENSNFUG00015025082)	HRH2 (ENSNFUG00015025084)	KCNIP1B (ENSNFUG00015025085) #21	NPM1A (ENSNFUG00015025089) #22	cldn7b (ENSNFUG00015004702) #28	FGF11B (ENSNFUG00015004711) #29	nlgn2b (ENSNFUG00015004757)	ENSNFUG00015004876	KDM6BB (ENSNFUG00015004887)	tmem88a (ENSNFUG00015004898)	PCOLCE (ENSNFUG00015004929)	VAMP2 (ENSNFUG00015004991)	MPP1 (ENSNFUG00015005016)	TMLHE (ENSNFUG00015005038)	GABRQ (ENSNFUG00015005087)	ENSNFUG00015005308	ENSNFUG00015005311	ENSNFUG00015005317	ENSNFUG00015005347
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
NAME_6	ANCESTRAL SPECIES	16	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b.d	ENSGT00940000156324.f.b.c	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Amazon molly	MODERN SPECIES	266	ENSPFOG00000019312	SEZ6 (ENSPFOG00000019295)	lhx1b (ENSPFOG00000019290)	acaca (ENSPFOG00000019266)	tbx2a (ENSPFOG00000021683)	ppm1db (ENSPFOG00000019247)	ROBO1 (ENSPFOG00000019224)	ENSPFOG00000019197	ENSPFOG00000022631	PCDH1 (ENSPFOG00000019187)	ENSPFOG00000019185	PCDHAC2 (ENSPFOG00000019182)	ENSPFOG00000019180	HRH2 (ENSPFOG00000019178)	kcnip1b (ENSPFOG00000019177) #21	npm1a (ENSPFOG00000019173) #22	cldn7b (ENSPFOG00000019168) #28	ENSPFOG00000019167 #29	nlgn2b (ENSPFOG00000019161)	ENSPFOG00000019160	kdm6bb (ENSPFOG00000019157)	tmem88a (ENSPFOG00000019154)	pcolcea (ENSPFOG00000019150)	vamp2 (ENSPFOG00000019145)	mpp1 (ENSPFOG00000019139)	TMLHE (ENSPFOG00000019134)	ENSPFOG00000019123	GABRA3 (ENSPFOG00000019092)	TMEM164 (ENSPFOG00000019076)	ammecr1 (ENSPFOG00000019068)	kif4 (ENSPFOG00000019046)
Sailfin molly	MODERN SPECIES	412											ENSPLAG00000001083	ENSPLAG00000001084	PCDHAC2 (ENSPLAG00000001085)	HRH2 (ENSPLAG00000001087)	kcnip1b (ENSPLAG00000001089) #21	npm1a (ENSPLAG00000001093) #22	cldn7b (ENSPLAG00000001097) #28	ENSPLAG00000001100 #29
Guppy	MODERN SPECIES	444	SEZ6 (ENSPREG00000001190)	ENSPREG00000001213	acaca (ENSPREG00000001223)	ENSPREG00000001395	ppm1db (ENSPREG00000001418)	ENSPREG00000001431	ROBO1 (ENSPREG00000001437)	ENSPREG00000001469	PCDH1 (ENSPREG00000001526)	ENSPREG00000001556	ENSPREG00000001576	ENSPREG00000001582	PCDHAC2 (ENSPREG00000001597)	HRH2 (ENSPREG00000001612)	kcnip1b (ENSPREG00000001624) #21	npm1a (ENSPREG00000001647) #22	cldn7b (ENSPREG00000001658) #28	ENSPREG00000001665 #29	nlgn2b (ENSPREG00000001696)	ENSPREG00000001729	kdm6bb (ENSPREG00000001746)	tmem88a (ENSPREG00000001803)	vamp2 (ENSPREG00000001829)	mpp1 (ENSPREG00000001845)	ENSPREG00000001903	ENSPREG00000001933	ENSPREG00000001964	ENSPREG00000001999	ENSPREG00000002011	ENSPREG00000002062	ENSPREG00000002096
Platyfish	MODERN SPECIES	2	acaca (ENSXMAG00000000487)	tbx2a (ENSXMAG00000000486)	ppm1db (ENSXMAG00000000484)	ENSXMAG00000027104	ROBO2 (ENSXMAG00000000420)	ENSXMAG00000026173	PCDH1 (ENSXMAG00000000419)	ENSXMAG00000019451	ENSXMAG00000021668	ENSXMAG00000000418	ENSXMAG00000026894	PCDHAC2 (ENSXMAG00000026972)	ENSXMAG00000023262	HRH2 (ENSXMAG00000024792)	kcnip1b (ENSXMAG00000000405) #21	npm1a (ENSXMAG00000000396) #22	cldn7b (ENSXMAG00000000393) #28	FGF11 (ENSXMAG00000000385) #29	nlgn2b (ENSXMAG00000000369)	ENSXMAG00000000366	kdm6bb (ENSXMAG00000000363)	tmem88a (ENSXMAG00000024040)	pcolcea (ENSXMAG00000000354)	vamp2 (ENSXMAG00000000353)	mpp1 (ENSXMAG00000004921)	TMLHE (ENSXMAG00000004928)	ENSXMAG00000004933	GABRA3 (ENSXMAG00000004953)	TMEM164 (ENSXMAG00000004995)	ammecr1 (ENSXMAG00000026670)	kif4 (ENSXMAG00000005017)
NAME_4	ANCESTRAL SPECIES	5	ENSGT01090000260005.a.a.b.a.b	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Mummichog	MODERN SPECIES	652														HRH2 (ENSFHEG00000012482)	kcnip1b (ENSFHEG00000012489) #21	npm1a (ENSFHEG00000012496) #22	cldn7b (ENSFHEG00000012505) #28	FGF11 (ENSFHEG00000012521) #29	ENSFHEG00000012533	ENSFHEG00000012547
Sheepshead minnow	MODERN SPECIES	168									ENSCVAG00000008883	PCDH1 (ENSCVAG00000008897)	ENSCVAG00000008901	ENSCVAG00000008913	PCDHAC2 (ENSCVAG00000008923)	HRH2 (ENSCVAG00000008936)	kcnip1b (ENSCVAG00000008950) #21	npm1a (ENSCVAG00000008960) #22	cldn7b (ENSCVAG00000008965) #28	FGF11 (ENSCVAG00000008999) #29	nlgn2b (ENSCVAG00000009024)	ENSCVAG00000009033	kdm6bb (ENSCVAG00000009082)	tmem88a (ENSCVAG00000009096)	pcolcea (ENSCVAG00000009104)	vamp2 (ENSCVAG00000009117)	mpp1 (ENSCVAG00000009127)	TMLHE (ENSCVAG00000009148)	ENSCVAG00000009151	GABRA3 (ENSCVAG00000009174)	TMEM164 (ENSCVAG00000009191)	ammecr1 (ENSCVAG00000009197)	kif4 (ENSCVAG00000009212)
Oryzias	ANCESTRAL SPECIES	14	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00990000204690	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00990000204690	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Japanese Medaka HdrR	MODERN SPECIES	5	tbx2a (ENSORLG00000010011)	ppm1db (ENSORLG00000010017)	ENSORLG00000010043	ENSORLG00000010067	ENSORLG00000026763	ENSORLG00000024209	PCDH1 (ENSORLG00000010092)	ENSORLG00000028076	ENSORLG00000030001	ENSORLG00000026884	ENSORLG00000023878	PCDHAC2 (ENSORLG00000010124)	ENSORLG00000026282	HRH2 (ENSORLG00000010128)	kcnip1b (ENSORLG00000010149) #21	npm1a (ENSORLG00000010179) #22	cldn7b (ENSORLG00000010194) #28	ENSORLG00000023090 #29	ENSORLG00000028085	nlgn2b (ENSORLG00000010232)	ENSORLG00000025447	ENSORLG00000010242	kdm6bb (ENSORLG00000010264)	ENSORLG00000030519	pcolcea (ENSORLG00000010290)	vamp2 (ENSORLG00000010306)	mpp1 (ENSORLG00000010312)	TMLHE (ENSORLG00000010326)	ENSORLG00000010333	GABRA3 (ENSORLG00000010408)	ENSORLG00000016291
Chinese medaka	MODERN SPECIES	717	lhx1b (ENSOSIG00000015796)	TBX2 (ENSOSIG00000015687)	ppm1db (ENSOSIG00000015685)	ROBO1 (ENSOSIG00000015563)	ROBO2 (ENSOSIG00000014733)	PCDH1 (ENSOSIG00000014719)	ENSOSIG00000014718	ENSOSIG00000014717	ENSOSIG00000014716	ENSOSIG00000014715	ENSOSIG00000014714	PCDHAC2 (ENSOSIG00000014713)	ENSOSIG00000014712	HRH2 (ENSOSIG00000014711)	kcnip1b (ENSOSIG00000014673) #21	npm1a (ENSOSIG00000014667) #22	cldn7b (ENSOSIG00000014664) #28	ENSOSIG00000014661 #29
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00990000204690	ENSGT00970000198378	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Indian medaka	MODERN SPECIES	4	lhx1b (ENSOMEG00000006567)	acaca (ENSOMEG00000006649)	ENSOMEG00000000824	ppm1db (ENSOMEG00000006679)	ROBO1 (ENSOMEG00000006795)	ROBO2 (ENSOMEG00000006879)	PCDH1 (ENSOMEG00000006912)	ENSOMEG00000006921	ENSOMEG00000006929	ENSOMEG00000006940	ENSOMEG00000006944	PCDHAC2 (ENSOMEG00000006953)	ENSOMEG00000006970	HRH2 (ENSOMEG00000006985)	kcnip1b (ENSOMEG00000007050) #21	npm1a (ENSOMEG00000007083) #22	cldn7b (ENSOMEG00000007100) #28	ENSOMEG00000000168 #29	nlgn2b (ENSOMEG00000007179)	ENSOMEG00000007211	kdm6bb (ENSOMEG00000007268)	tmem88a (ENSOMEG00000007296)	pcolcea (ENSOMEG00000007308)	vamp2 (ENSOMEG00000007317)	mpp1 (ENSOMEG00000007364)	TMLHE (ENSOMEG00000007392)	ENSOMEG00000007438	GABRA3 (ENSOMEG00000007469)	TMEM164 (ENSOMEG00000007512)	ammecr1 (ENSOMEG00000007551)	flot2a (ENSOMEG00000007619)
Javanese ricefish	MODERN SPECIES	5	ENSOJAG00000011508	SEZ6 (ENSOJAG00000010565)	lhx1b (ENSOJAG00000010453)	tbx2a (ENSOJAG00000004628)	ppm1db (ENSOJAG00000004615)	ROBO1 (ENSOJAG00000003022)	ROBO2 (ENSOJAG00000002064)	ENSOJAG00000001810	PCDH1 (ENSOJAG00000001796)	ENSOJAG00000001794	PCDHAC2 (ENSOJAG00000001757)	ENSOJAG00000001738	ENSOJAG00000001724	HRH2 (ENSOJAG00000019508)	kcnip1b (ENSOJAG00000019484) #21	npm1a (ENSOJAG00000019410) #22	cldn7b (ENSOJAG00000019397) #28	ENSOJAG00000019367 #29	nlgn2b (ENSOJAG00000019219)	ENSOJAG00000019192	tmem88a (ENSOJAG00000019175)	pcolcea (ENSOJAG00000019146)	vamp2 (ENSOJAG00000019137)	TMLHE (ENSOJAG00000019117)	mpp1 (ENSOJAG00000019052)	ENSOJAG00000018911	GABRA3 (ENSOJAG00000018791)	TMEM164 (ENSOJAG00000018757)	ammecr1 (ENSOJAG00000018723)	SHPK (ENSOJAG00000018708)	emc6 (ENSOJAG00000018699)
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	21	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b.e	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Burton s mouthbrooder	MODERN SPECIES	406										ENSHBUG00000022498	ENSHBUG00000022492	PCDHAC2 (ENSHBUG00000022477)	ENSHBUG00000000687	HRH2 (ENSHBUG00000022462)	kcnip1b (ENSHBUG00000022452) #21	npm1a (ENSHBUG00000000776) #22	cldn7b (ENSHBUG00000022415) #28	FGF11 (ENSHBUG00000000917) #29	nlgn2b (ENSHBUG00000000681)	ENSHBUG00000022304	kdm6bb (ENSHBUG00000022288)	tmem88a (ENSHBUG00000022259)	pcolcea (ENSHBUG00000022245)	vamp2 (ENSHBUG00000022241)	mpp1 (ENSHBUG00000022236)	TMLHE (ENSHBUG00000022219)	ENSHBUG00000001103	ENSHBUG00000022194	GABRA3 (ENSHBUG00000022159)	TMEM164 (ENSHBUG00000022100)	ammecr1 (ENSHBUG00000022077)
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000176839.c.b.a.b.a.b	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b.e	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
P. nyererei	MODERN SPECIES	375	ENSPNYG00000018584	ENSPNYG00000018673	SEZ6 (ENSPNYG00000018729)	lhx1b (ENSPNYG00000018948)	acaca (ENSPNYG00000018975)	tbx2a (ENSPNYG00000019065)	ppm1db (ENSPNYG00000019091)	ENSPNYG00000019150	ENSPNYG00000019208	PCDH1 (ENSPNYG00000019237)	ENSPNYG00000019247	ENSPNYG00000019260	PCDHAC2 (ENSPNYG00000019271)	HRH2 (ENSPNYG00000019278)	kcnip1b (ENSPNYG00000019296) #21	npm1a (ENSPNYG00000019321) #22	cldn7b (ENSPNYG00000019376) #28	FGF11 (ENSPNYG00000019395) #29	nlgn2b (ENSPNYG00000019410)	ENSPNYG00000019431	kdm6bb (ENSPNYG00000019447)	tmem88a (ENSPNYG00000019468)	pcolcea (ENSPNYG00000019477)	vamp2 (ENSPNYG00000019507)	mpp1 (ENSPNYG00000019578)
Haplochromini_B	ANCESTRAL SPECIES	26	ENSGT00940000176839.c.b.a.b.a.b	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b.e	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Zebra mbuna	MODERN SPECIES	1092	zfpl1 (ENSMZEG00005013521)	FLRT1 (ENSMZEG00005013528)	rps6ka4 (ENSMZEG00005013541)	stip1 (ENSMZEG00005013574)	ENSMZEG00005013586	ENSMZEG00005013597	AKAP10 (ENSMZEG00005013626)	zgc:85789 (ENSMZEG00005013643)	ENSMZEG00005013658	PCDH1 (ENSMZEG00005013663)	ENSMZEG00005013667	ENSMZEG00005013674	PCDHAC2 (ENSMZEG00005013682)	HRH2 (ENSMZEG00005013687)	kcnip1b (ENSMZEG00005013696) #21	npm1a (ENSMZEG00005013717) #22	cldn7b (ENSMZEG00005013733) #28	FGF11 (ENSMZEG00005013737) #29	nlgn2b (ENSMZEG00005013745)	ENSMZEG00005013750	kdm6bb (ENSMZEG00005013759)	tmem88a (ENSMZEG00005013769)	pcolcea (ENSMZEG00005013775)	vamp2 (ENSMZEG00005013780)	mpp1 (ENSMZEG00005013784)	TMLHE (ENSMZEG00005013795)	ENSMZEG00005013807	ENSMZEG00005013820	ENSMZEG00005013840	ABR (ENSMZEG00005013860)	aspa (ENSMZEG00005013967)
Eastern happy	MODERN SPECIES	1	SEZ6 (ENSACLG00000008116)	lhx1b (ENSACLG00000008123)	acaca (ENSACLG00000008135)	tbx2a (ENSACLG00000008196)	ppm1db (ENSACLG00000008212)	ROBO1 (ENSACLG00000008219)	ROBO2 (ENSACLG00000008288)	ENSACLG00000008326	PCDH1 (ENSACLG00000008333)	ENSACLG00000008338	ENSACLG00000008340	PCDHAC2 (ENSACLG00000008341)	ENSACLG00000008343	HRH2 (ENSACLG00000008345)	kcnip1b (ENSACLG00000008347) #21	npm1a (ENSACLG00000008376) #22	cldn7b (ENSACLG00000008390) #28	FGF11 (ENSACLG00000008398) #29	ENSACLG00000008405	ENSACLG00000008413	nlgn2b (ENSACLG00000008426)	ENSACLG00000008439	kdm6bb (ENSACLG00000008442)	tmem88a (ENSACLG00000008457)	pcolcea (ENSACLG00000008464)	vamp2 (ENSACLG00000008474)	mpp1 (ENSACLG00000008484)	TMLHE (ENSACLG00000008508)	ENSACLG00000008530	ENSACLG00000009102	ENSACLG00000009150
Lyretail cichlid	MODERN SPECIES	354	VEZF1 (ENSNBRG00000014527)	ENSNBRG00000014413	SEZ6 (ENSNBRG00000014251)	ENSNBRG00000014225	ENSNBRG00000014218	acaca (ENSNBRG00000014106)	tbx2a (ENSNBRG00000014000)	ppm1db (ENSNBRG00000013923)	ENSNBRG00000013907	ENSNBRG00000013878	PCDH1 (ENSNBRG00000013845)	ENSNBRG00000013313	PCDHAC2 (ENSNBRG00000013243)	HRH2 (ENSNBRG00000013209)	kcnip1b (ENSNBRG00000013192) #21	npm1a (ENSNBRG00000013172) #22	cldn7b (ENSNBRG00000013165) #28	FGF11 (ENSNBRG00000013151) #29	nlgn2b (ENSNBRG00000013121)	ENSNBRG00000013103	kdm6bb (ENSNBRG00000013075)	tmem88a (ENSNBRG00000013062)	pcolcea (ENSNBRG00000013045)	vamp2 (ENSNBRG00000013031)	mpp1 (ENSNBRG00000013022)	TMLHE (ENSNBRG00000013003)	ENSNBRG00000012986	ENSNBRG00000012964	GABRA3 (ENSNBRG00000012938)	TMEM164 (ENSNBRG00000012919)	ammecr1 (ENSNBRG00000012898)
Nile tilapia	MODERN SPECIES	1	ENSONIG00000001955	SEZ6 (ENSONIG00000001950)	lhx1b (ENSONIG00000001948)	acaca (ENSONIG00000001922)	tbx2a (ENSONIG00000001919)	ppm1db (ENSONIG00000001916)	ROBO1 (ENSONIG00000001894)	ROBO2 (ENSONIG00000001873)	PCDH1 (ENSONIG00000001872)	ENSONIG00000001870	ENSONIG00000029439	PCDHAC2 (ENSONIG00000027636)	ENSONIG00000028883	HRH2 (ENSONIG00000001869)	kcnip1b (ENSONIG00000001865) #21	npm1a (ENSONIG00000001860) #22	cldn7b (ENSONIG00000001856) #28	FGF11 (ENSONIG00000001855) #29	nlgn2b (ENSONIG00000001843)	ENSONIG00000001842	kdm6bb (ENSONIG00000001837)	tmem88a (ENSONIG00000001835)	pcolcea (ENSONIG00000001827)	vamp2 (ENSONIG00000007000)	mpp1 (ENSONIG00000033236)	TMLHE (ENSONIG00000001823)	ENSONIG00000042654	ENSONIG00000001820	ENSONIG00000001813	GABRA3 (ENSONIG00000001804)	TMEM164 (ENSONIG00000033752)
Midas cichlid	MODERN SPECIES	1216							ppm1db (ENSACIG00000013809)	ROBO1 (ENSACIG00000013868)	ENSACIG00000014085	PCDH1 (ENSACIG00000014114)	ENSACIG00000014127	ENSACIG00000014140	PCDHAC2 (ENSACIG00000014146)	HRH2 (ENSACIG00000014166)	kcnip1b (ENSACIG00000014180) #21	npm1a (ENSACIG00000014201) #22	cldn7b (ENSACIG00000014224) #28	FGF11 (ENSACIG00000014232) #29	nlgn2b (ENSACIG00000014246)	ENSACIG00000014265	kdm6bb (ENSACIG00000014279)	tmem88a (ENSACIG00000014307)	pcolcea (ENSACIG00000014313)	vamp2 (ENSACIG00000014327)	mpp1 (ENSACIG00000014338)	TMLHE (ENSACIG00000014392)	ENSACIG00000014404	ENSACIG00000014415	GABRA3 (ENSACIG00000014451)	TMEM164 (ENSACIG00000014547)	ammecr1 (ENSACIG00000014561)
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Orange clownfish	MODERN SPECIES	6	acaca (ENSAPEG00000008092)	ENSAPEG00000008209	ENSAPEG00000008227	tbx2a (ENSAPEG00000008239)	ppm1db (ENSAPEG00000008249)	ENSAPEG00000008258	ENSAPEG00000008293	ENSAPEG00000008386	PCDH1 (ENSAPEG00000008451)	ENSAPEG00000008479	ENSAPEG00000008487	PCDHAC2 (ENSAPEG00000008491)	ENSAPEG00000008518	HRH2 (ENSAPEG00000008522)	kcnip1b (ENSAPEG00000008545) #21	npm1a (ENSAPEG00000008594) #22	cldn7b (ENSAPEG00000008614) #28	FGF11 (ENSAPEG00000008651) #29	nlgn2b (ENSAPEG00000008681)	ENSAPEG00000008708	kdm6bb (ENSAPEG00000008717)	pcolcea (ENSAPEG00000008760)	tmem88a (ENSAPEG00000008794)	vamp2 (ENSAPEG00000008822)	mpp1 (ENSAPEG00000008835)	TMLHE (ENSAPEG00000008860)	ENSAPEG00000008882	ENSAPEG00000008891	GABRA3 (ENSAPEG00000008914)	TMEM164 (ENSAPEG00000008960)	ammecr1 (ENSAPEG00000008995)
Clown anemonefish	MODERN SPECIES	1279										ENSAOCG00000004878	ENSAOCG00000000195	ENSAOCG00000004925	PCDHAC2 (ENSAOCG00000004930)	HRH2 (ENSAOCG00000004938)	kcnip1b (ENSAOCG00000004964) #21	npm1a (ENSAOCG00000004978) #22	cldn7b (ENSAOCG00000004986) #28	FGF11 (ENSAOCG00000002646) #29	nlgn2b (ENSAOCG00000005010)	ENSAOCG00000005015	kdm6bb (ENSAOCG00000005033)	tmem88a (ENSAOCG00000005046)	pcolcea (ENSAOCG00000000207)	vamp2 (ENSAOCG00000005061)	mpp1 (ENSAOCG00000005081)	TMLHE (ENSAOCG00000005094)	ENSAOCG00000005256	ENSAOCG00000005320	GABRA3 (ENSAOCG00000005356)	TMEM164 (ENSAOCG00000005366)	ammecr1 (ENSAOCG00000000249)
Spiny chromis	MODERN SPECIES	2603															kcnip1b (ENSAPOG00000002837) #21	npm1a (ENSAPOG00000002813) #22	cldn7b (ENSAPOG00000002793) #28
Bicolor damselfish	MODERN SPECIES	860									wnt11 (ENSSPAG00000021822)	ENSSPAG00000021805	thap12a (ENSSPAG00000021794)	ENSSPAG00000021769	stt3a (ENSSPAG00000021717)	ei24 (ENSSPAG00000021695)	kcnip1b (ENSSPAG00000021683) #21	npm1a (ENSSPAG00000021660) #22	ENSSPAG00000021646	FGF11 (ENSSPAG00000021530) #29	nlgn2b (ENSSPAG00000021495)	ENSSPAG00000021488	kdm6bb (ENSSPAG00000021473)	tmem88a (ENSSPAG00000021466)	pcolcea (ENSSPAG00000021430)
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Fugu	MODERN SPECIES	6	ENSTRUG00000010496	lhx1b (ENSTRUG00000010398)	acaca (ENSTRUG00000010043)	tbx2a (ENSTRUG00000009981)	ppm1db (ENSTRUG00000009943)	ENSTRUG00000031147	ROBO2 (ENSTRUG00000027553)	ENSTRUG00000022748	PCDH1 (ENSTRUG00000008240)	ENSTRUG00000007848	ENSTRUG00000031769	PCDHAC2 (ENSTRUG00000019863)	ENSTRUG00000027523	HRH2 (ENSTRUG00000007773)	kcnip1b (ENSTRUG00000007648) #21	npm1a (ENSTRUG00000024003) #22	cldn7b (ENSTRUG00000022766) #28	FGF11 (ENSTRUG00000007364) #29	ENSTRUG00000025551	nlgn2a (ENSTRUG00000007038)	ENSTRUG00000024116	kdm6bb (ENSTRUG00000022289)	tmem88a (ENSTRUG00000020844)	pcolcea (ENSTRUG00000006387)	mpp1 (ENSTRUG00000006002)	TMLHE (ENSTRUG00000005859)	ENSTRUG00000004331	ENSTRUG00000002674	TMEM164 (ENSTRUG00000002371)	ammecr1 (ENSTRUG00000025282)	kif4 (ENSTRUG00000004160)
Tetraodon	MODERN SPECIES	22	KSR1 (ENSTNIG00000011835)	VEZF1 (ENSTNIG00000011836)	ENSTNIG00000001238	ENSTNIG00000011837	SEZ6 (ENSTNIG00000010762)	lhx1b (ENSTNIG00000010763)	acaca (ENSTNIG00000010764)	tbx2a (ENSTNIG00000010765)	ppm1db (ENSTNIG00000010766)	ENSTNIG00000010767	ROBO2 (ENSTNIG00000010768)	PCDH1 (ENSTNIG00000010769)	PCDHAC2 (ENSTNIG00000010770)	HRH2 (ENSTNIG00000010771)	kcnip1b (ENSTNIG00000010772) #21	npm1a (ENSTNIG00000010773) #22	cldn7b (ENSTNIG00000010774) #28	FGF11 (ENSTNIG00000010775) #29	nlgn2b (ENSTNIG00000010776)	ENSTNIG00000010777	kdm6bb (ENSTNIG00000010778)	pcolcea (ENSTNIG00000010779)	vamp2 (ENSTNIG00000010780)	mpp1 (ENSTNIG00000010781)	TMLHE (ENSTNIG00000010782)	ENSTNIG00000010783	GABRA3 (ENSTNIG00000010784)	ammecr1 (ENSTNIG00000010785)	kif4 (ENSTNIG00000010786)	adssl (ENSTNIG00000010787)	KCNK4 (ENSTNIG00000010788)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Ballan wrasse	MODERN SPECIES	30	ENSLBEG00000007352	ENSLBEG00000007485	lhx1b (ENSLBEG00000007536)	acaca (ENSLBEG00000007593)	tbx2a (ENSLBEG00000007793)	ppm1db (ENSLBEG00000008035)	ROBO1 (ENSLBEG00000008067)	ENSLBEG00000008142	ENSLBEG00000008201	PCDH1 (ENSLBEG00000008214)	ENSLBEG00000008332	ENSLBEG00000008665	PCDHAC2 (ENSLBEG00000008679)	HRH2 (ENSLBEG00000008690)	kcnip1b (ENSLBEG00000008764) #21	npm1a (ENSLBEG00000008793) #22	ENSLBEG00000008814	FGF11 (ENSLBEG00000008825) #29	ENSLBEG00000008856
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Gilthead seabream	MODERN SPECIES	4	ENSSAUG00010009559	SEZ6 (ENSSAUG00010009150)	lhx1b (ENSSAUG00010009136)	acaca (ENSSAUG00010006091)	tbx2a (ENSSAUG00010005995)	ppm1db (ENSSAUG00010005994)	ENSSAUG00010005660	ROBO2 (ENSSAUG00010002766)	PCDH1 (ENSSAUG00010002681)	ENSSAUG00010002675	ENSSAUG00010002670	PCDHAC2 (ENSSAUG00010002660)	ENSSAUG00010002653	HRH2 (ENSSAUG00010002644)	kcnip1b (ENSSAUG00010002585) #21	npm1a (ENSSAUG00010002570) #22	cldn7b (ENSSAUG00010002567) #28	ENSSAUG00010002562 #29	nlgn2b (ENSSAUG00010002448)	ENSSAUG00010002444	kdm6bb (ENSSAUG00010002416)	tmem88a (ENSSAUG00010002395)	pcolcea (ENSSAUG00010002390)	vamp2 (ENSSAUG00010002387)	mpp1 (ENSSAUG00010002192)	TMLHE (ENSSAUG00010002167)	ENSSAUG00010002161	ENSSAUG00010002147	GABRA3 (ENSSAUG00010002134)	TMEM164 (ENSSAUG00010002125)	ammecr1 (ENSSAUG00010002120)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
European seabass	MODERN SPECIES	4	ENSDLAG00005019489	ENSDLAG00005019086	lhx1b (ENSDLAG00005019048)	acaca (ENSDLAG00005007628)	tbx2a (ENSDLAG00005007123)	ppm1db (ENSDLAG00005007115)	ENSDLAG00005006594	ENSDLAG00005004407	ENSDLAG00005004176	ENSDLAG00005023047	ENSDLAG00005023043	ENSDLAG00005023039	ENSDLAG00005023028	ENSDLAG00005023027	ENSDLAG00005023019 #21	ENSDLAG00005023017 #22	cldn7b (ENSDLAG00005023015) #28	ENSDLAG00005029193 #29	ENSDLAG00005028738	nlgn2b (ENSDLAG00005022969)	ENSDLAG00005022957	kdm6bb (ENSDLAG00005022934)	tmem88a (ENSDLAG00005022931)	pcolcea (ENSDLAG00005022926)	vamp2 (ENSDLAG00005033206)	ENSDLAG00005022865	ENSDLAG00005032030	ENSDLAG00005022845	ENSDLAG00005022801	ENSDLAG00005022769	ENSDLAG00005028943
Large yellow croaker	MODERN SPECIES	493	ENSLCRG00005023324	SEZ6 (ENSLCRG00005023316)	lhx1b (ENSLCRG00005023312)	acaca (ENSLCRG00005021121)	tbx2a (ENSLCRG00005021051)	ppm1db (ENSLCRG00005021049)	ROBO1 (ENSLCRG00005021034)	ROBO2 (ENSLCRG00005020848)	PCDH1 (ENSLCRG00005020838)	ENSLCRG00005020837	ENSLCRG00005020836	PCDHAC2 (ENSLCRG00005020835)	ENSLCRG00005020834	HRH2 (ENSLCRG00005020833)	kcnip1b (ENSLCRG00005020832) #21	npm1a (ENSLCRG00005020831) #22	cldn7b (ENSLCRG00005020830) #28	FGF11 (ENSLCRG00005020829) #29	nlgn2b (ENSLCRG00005020797)	ENSLCRG00005020791	kdm6bb (ENSLCRG00005020788)	tmem88a (ENSLCRG00005020787)	pcolcea (ENSLCRG00005020784)	vamp2 (ENSLCRG00005020783)	mpp1 (ENSLCRG00005020596)	TMLHE (ENSLCRG00005020581)	ENSLCRG00005020579	GABRA3 (ENSLCRG00005020578)	ENSLCRG00005020576	TMEM164 (ENSLCRG00005020575)	ammecr1 (ENSLCRG00005020573)
Perciformes	ANCESTRAL SPECIES	25	ENSGT01090000260005.a.a.b.a.b	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Cottioidei	ANCESTRAL SPECIES	10	ENSGT01090000260005.a.a.b.a.b	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000166502	ENSGT00940000156455	ENSGT00940000159451	ENSGT01050000244864.B.a.g.a.a.a	ENSGT01030000235048	ENSGT01030000234513.B.a.d	ENSGT00940000160157	ENSGT00940000155516.u	ENSGT01090000260082.d.a.a.d	ENSGT00940000159316
Lumpfish	MODERN SPECIES	5	VEZF1 (ENSCLMG00005023104)	ENSCLMG00005023103	ENSCLMG00005023101	SEZ6 (ENSCLMG00005023100)	lhx1b (ENSCLMG00005023099)	acaca (ENSCLMG00005020773)	tbx2a (ENSCLMG00005020546)	ENSCLMG00005020545	ENSCLMG00005020544	ENSCLMG00005020542	PCDH1 (ENSCLMG00005020539)	ENSCLMG00005020537	ENSCLMG00005020536	HRH2 (ENSCLMG00005020535)	kcnip1b (ENSCLMG00005020533) #21	npm1a (ENSCLMG00005020532) #22	ENSCLMG00005020531	FGF11 (ENSCLMG00005020530) #29	nlgn2b (ENSCLMG00005020529)	ENSCLMG00005020528	ENSCLMG00005020527	glra4b (ENSCLMG00005020526)	aifm1 (ENSCLMG00005019575)	tbc1d8b (ENSCLMG00005019549)	gja2 (ENSCLMG00005019548)	ENSCLMG00005019547	gjb1a (ENSCLMG00005019546)	OPHN1 (ENSCLMG00005019542)	AR (ENSCLMG00005019538)	msna (ENSCLMG00005019528)	ZC3H12B (ENSCLMG00005019519)
Stickleback	MODERN SPECIES	7	VEZF1 (ENSGACG00000020304)	ENSGACG00000020305	SEZ6 (ENSGACG00000020306)	lhx1b (ENSGACG00000020307)	acaca (ENSGACG00000020308)	tbx2a (ENSGACG00000020309)	ppm1db (ENSGACG00000020310)	ROBO1 (ENSGACG00000020311)	ROBO2 (ENSGACG00000020312)	PCDH1 (ENSGACG00000020313)	ENSGACG00000020314	PCDHAC2 (ENSGACG00000020315)	ENSGACG00000020316	HRH2 (ENSGACG00000020317)	kcnip1b (ENSGACG00000020318) #21	npm1a (ENSGACG00000020319) #22	cldn7b (ENSGACG00000020320) #28	ENSGACG00000020321 #29	nlgn2b (ENSGACG00000020322)	ENSGACG00000020323	ENSGACG00000020324	KDM6B (ENSGACG00000020325)	glra4b (ENSGACG00000020326)	aifm1 (ENSGACG00000020327)	tbc1d8b (ENSGACG00000020328)	gja2 (ENSGACG00000020329)	gjb1a (ENSGACG00000020330)	OPHN1 (ENSGACG00000020331)	AR (ENSGACG00000020332)	msna (ENSGACG00000020333)	ZC3H12B (ENSGACG00000020334)
Perciformes_a	ANCESTRAL SPECIES	34	ENSGT01090000260005.a.a.b.a.b	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Pike perch	MODERN SPECIES	37	SEZ6 (ENSSLUG00000014103)	lhx1b (ENSSLUG00000014024)	acaca (ENSSLUG00000006714)	tbx2a (ENSSLUG00000006180)	ppm1db (ENSSLUG00000006171)	ENSSLUG00000006166	ROBO1 (ENSSLUG00000006087)	ROBO2 (ENSSLUG00000006052)	PCDH1 (ENSSLUG00000005983)	ENSSLUG00000005967	ENSSLUG00000005964	ENSSLUG00000005958	PCDHAC2 (ENSSLUG00000005950)	HRH2 (ENSSLUG00000005947)	kcnip1b (ENSSLUG00000005923) #21	npm1a (ENSSLUG00000005907) #22	cldn7b (ENSSLUG00000005892) #28	FGF11 (ENSSLUG00000005866) #29	nlgn2b (ENSSLUG00000005721)	ENSSLUG00000005695	kdm6bb (ENSSLUG00000005672)	tmem88a (ENSSLUG00000005664)	pcolcea (ENSSLUG00000005533)	vamp2 (ENSSLUG00000005499)	mpp1 (ENSSLUG00000005351)
Channel bull blenny	MODERN SPECIES	5	ENSCGOG00000023632	SEZ6 (ENSCGOG00000023983)	lhx1b (ENSCGOG00000024077)	acaca (ENSCGOG00000024122)	tbx2a (ENSCGOG00000024284)	ppm1db (ENSCGOG00000024285)	ROBO1 (ENSCGOG00000024321)	ENSCGOG00000024468	PCDH1 (ENSCGOG00000024495)	ENSCGOG00000024497	PCDHAC2 (ENSCGOG00000024498)	ENSCGOG00000024499	ENSCGOG00000024500	HRH2 (ENSCGOG00000024501)	kcnip1b (ENSCGOG00000024503) #21	npm1a (ENSCGOG00000024504) #22	cldn7b (ENSCGOG00000024505) #28	FGF11 (ENSCGOG00000024507) #29	nlgn2b (ENSCGOG00000024512)	ENSCGOG00000024515	kdm6bb (ENSCGOG00000024521)	tmem88a (ENSCGOG00000024527)	pcolcea (ENSCGOG00000024525)	vamp2 (ENSCGOG00000024529)	mpp1 (ENSCGOG00000024534)	TMLHE (ENSCGOG00000024546)	ENSCGOG00000024547	ENSCGOG00000004069	GABRA3 (ENSCGOG00000004093)	TMEM164 (ENSCGOG00000004139)	ammecr1 (ENSCGOG00000004142)
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Pleuronectoidei	ANCESTRAL SPECIES	27	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000183362	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Turbot	MODERN SPECIES	16	ENSSMAG00000018683	ENSSMAG00000018687	lhx1b (ENSSMAG00000018705)	acaca (ENSSMAG00000018733)	tbx2a (ENSSMAG00000018798)	ppm1db (ENSSMAG00000018804)	ENSSMAG00000018817	ENSSMAG00000018887	ENSSMAG00000018935	ENSSMAG00000018975	ENSSMAG00000018984	ENSSMAG00000018993	ENSSMAG00000018999	ENSSMAG00000019007	ENSSMAG00000019010 #21	ENSSMAG00000019090 #22	cldn7b (ENSSMAG00000019124) #28	ENSSMAG00000019125 #29	nlgn2b (ENSSMAG00000019144)	ENSSMAG00000019203	kdm6bb (ENSSMAG00000019216)	tmem88a (ENSSMAG00000019282)	pcolcea (ENSSMAG00000019284)	vamp2 (ENSSMAG00000033547)	ENSSMAG00000019304	ENSSMAG00000019328	ENSSMAG00000019342	ENSSMAG00000019358	ENSSMAG00000019393	ENSSMAG00000019406	ENSSMAG00000019415
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	10	sgcd (ENSCSEG00000020506)	ENSCSEG00000020498	NDUFA2 (ENSCSEG00000020492)	ik (ENSCSEG00000020488)	chm (ENSCSEG00000020480)	cnot8 (ENSCSEG00000020475)	ENSCSEG00000020467	mrpl22 (ENSCSEG00000020463)	ENSCSEG00000020459	ENSCSEG00000020430	ENSCSEG00000020418	ENSCSEG00000020410	ENSCSEG00000020406	slc23a1 (ENSCSEG00000020389)	chmp1b (ENSCSEG00000020385)	ENSCSEG00000020384 #22	gsx1 (ENSCSEG00000020381)	ENSCSEG00000020379	ENSCSEG00000020377	b4galt4 (ENSCSEG00000020375)	CASR (ENSCSEG00000020372)	zgc:175280 (ENSCSEG00000020365)	kif20a (ENSCSEG00000020345)	cdc23 (ENSCSEG00000020338)	ENSCSEG00000020329	slc25a5 (ENSCSEG00000020323)	zbtb20 (ENSCSEG00000020320)	DLG4 (ENSCSEG00000020314)	ephb4a (ENSCSEG00000020306)	KCNAB3 (ENSCSEG00000020245)	ENSCSEG00000020240
Tongue sole	MODERN SPECIES	10	slc22a21 (ENSCSEG00000011683)	ENSCSEG00000011645	ENSCSEG00000011612	lhx1b (ENSCSEG00000011601)	acaca (ENSCSEG00000011442)	ENSCSEG00000011423	ppm1db (ENSCSEG00000011407)	ROBO1 (ENSCSEG00000011320)	ROBO2 (ENSCSEG00000011288)	PCDH1 (ENSCSEG00000011244)	ENSCSEG00000011211	ENSCSEG00000011203	ENSCSEG00000011200	PCDHAC2 (ENSCSEG00000011194)	HRH2 (ENSCSEG00000011190)	npm1a (ENSCSEG00000011165) #22	cldn7b (ENSCSEG00000011159) #28	ENSCSEG00000011150 #29	nlgn2b (ENSCSEG00000011119)	kdm6bb (ENSCSEG00000011085)	ENSCSEG00000011072	tmem88a (ENSCSEG00000011069)	pcolcea (ENSCSEG00000011063)	vamp2 (ENSCSEG00000011053)	mpp1 (ENSCSEG00000011026)	TMLHE (ENSCSEG00000011005)	ENSCSEG00000010984	GABRA3 (ENSCSEG00000010971)	TMEM164 (ENSCSEG00000010961)	ammecr1 (ENSCSEG00000010951)	kif4 (ENSCSEG00000010912)
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a.c	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a.c	ENSGT00940000156706.b	ENSGT00940000178675	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Yellowtail amberjack	MODERN SPECIES	2973	ENSSLDG00000017336	SEZ6 (ENSSLDG00000017402)	lhx1b (ENSSLDG00000017427)	acaca (ENSSLDG00000017462)	ENSSLDG00000017565	tbx2a (ENSSLDG00000017580)	ppm1db (ENSSLDG00000017589)	ROBO1 (ENSSLDG00000017612)	ENSSLDG00000017699	PCDH1 (ENSSLDG00000017748)	ENSSLDG00000017759	ENSSLDG00000017772	PCDHAC2 (ENSSLDG00000017781)	HRH2 (ENSSLDG00000017793)	kcnip1b (ENSSLDG00000017813) #21	npm1a (ENSSLDG00000017849) #22	cldn7b (ENSSLDG00000017874) #28	ENSSLDG00000017891 #29	nlgn2b (ENSSLDG00000017919)	ENSSLDG00000017950	kdm6bb (ENSSLDG00000017966)	tmem88a (ENSSLDG00000018025)	pcolcea (ENSSLDG00000018038)	vamp2 (ENSSLDG00000018051)	mpp1 (ENSSLDG00000018059)	TMLHE (ENSSLDG00000018087)	ENSSLDG00000018110	ENSSLDG00000018156	GABRA3 (ENSSLDG00000018231)	TMEM164 (ENSSLDG00000018272)	ammecr1 (ENSSLDG00000018329)
Greater amberjack	MODERN SPECIES	39	ENSSDUG00000014731	SEZ6 (ENSSDUG00000014823)	lhx1b (ENSSDUG00000015049)	acaca (ENSSDUG00000015072)	tbx2a (ENSSDUG00000015169)	ppm1db (ENSSDUG00000015198)	ENSSDUG00000015309	ENSSDUG00000015322	ENSSDUG00000015333	PCDH1 (ENSSDUG00000015358)	ENSSDUG00000015390	ENSSDUG00000015563	PCDHAC2 (ENSSDUG00000015572)	HRH2 (ENSSDUG00000015582)	kcnip1b (ENSSDUG00000015591) #21	npm1a (ENSSDUG00000015609) #22	cldn7b (ENSSDUG00000015623) #28	FGF11 (ENSSDUG00000015630) #29	nlgn2b (ENSSDUG00000015644)	ENSSDUG00000015656	kdm6bb (ENSSDUG00000015668)	tmem88a (ENSSDUG00000015683)	pcolcea (ENSSDUG00000015694)	ENSSDUG00000015706	vamp2 (ENSSDUG00000015716)	mpp1 (ENSSDUG00000015726)	TMLHE (ENSSDUG00000015774)	ENSSDUG00000015790	ENSSDUG00000015818	GABRA3 (ENSSDUG00000015839)	TMEM164 (ENSSDUG00000015862)
Barramundi perch	MODERN SPECIES	94	ENSLCAG00010021997	ENSLCAG00010021758	SEZ6 (ENSLCAG00010021648)	lhx1b (ENSLCAG00010021635)	acaca (ENSLCAG00010021522)	tbx2a (ENSLCAG00010021471)	ppm1db (ENSLCAG00010021470)	ENSLCAG00010021369	ROBO2 (ENSLCAG00010021147)	PCDH1 (ENSLCAG00010021078)	ENSLCAG00010021077	ENSLCAG00010021076	PCDHAC2 (ENSLCAG00010021073)	HRH2 (ENSLCAG00010021072)	kcnip1b (ENSLCAG00010021065) #21	npm1a (ENSLCAG00010021047) #22	cldn7b (ENSLCAG00010021036) #28	ENSLCAG00010021033 #29	nlgn2b (ENSLCAG00010021003)	ENSLCAG00010020993	kdm6bb (ENSLCAG00010020985)	tmem88a (ENSLCAG00010020982)	pcolcea (ENSLCAG00010020976)	vamp2 (ENSLCAG00010020964)	mpp1 (ENSLCAG00010020925)	TMLHE (ENSLCAG00010020912)	ENSLCAG00010020906	ENSLCAG00010020897	GABRA3 (ENSLCAG00010020885)	TMEM164 (ENSLCAG00010020879)	ammecr1 (ENSLCAG00010020875)
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000010399	ENSMAMG00000010318	ENSMAMG00000009882	lhx1b (ENSMAMG00000009864)	tbx2a (ENSMAMG00000009659)	ppm1db (ENSMAMG00000009633)	ENSMAMG00000009593	ENSMAMG00000009453	ENSMAMG00000009440	ENSMAMG00000024866	ENSMAMG00000009414	ENSMAMG00000009407	ENSMAMG00000009396	ENSMAMG00000009385	ENSMAMG00000009361 #21	ENSMAMG00000009344 #22	cldn7b (ENSMAMG00000009333) #28	ENSMAMG00000009318 #29	nlgn2b (ENSMAMG00000009287)	ENSMAMG00000009273	kdm6bb (ENSMAMG00000009257)	tmem88a (ENSMAMG00000009236)	pcolcea (ENSMAMG00000009224)	vamp2 (ENSMAMG00000008921)	ENSMAMG00000008897	ENSMAMG00000008884	ENSMAMG00000026131	ENSMAMG00000008850	ENSMAMG00000008831	ENSMAMG00000008814	ENSMAMG00000008796
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000164085.d.a	ENSGT00940000156706.b	ENSGT00940000158439.n	ENSGT00940000155672.h	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a	ENSGT00940000160554.a	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000164382.a	ENSGT00940000158744	ENSGT00530000063582.a	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000007430	ENSGT00390000010397.a
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000019468	SEZ6 (ENSBSLG00000019848)	lhx1b (ENSBSLG00000020217)	acaca (ENSBSLG00000021616)	tbx2a (ENSBSLG00000025187)	ppm1db (ENSBSLG00000025189)	ENSBSLG00000025436	ENSBSLG00000025638	PCDH1 (ENSBSLG00000025866)	ENSBSLG00000025867	ENSBSLG00000025868	PCDHAC2 (ENSBSLG00000025869)	ENSBSLG00000025870	ENSBSLG00000025871	kcnip1b (ENSBSLG00000025873) #21	npm1a (ENSBSLG00000025948) #22	cldn7b (ENSBSLG00000025970) #28	ENSBSLG00000025980 #29	nlgn2b (ENSBSLG00000026011)	ENSBSLG00000026030	kdm6bb (ENSBSLG00000026034)	tmem88a (ENSBSLG00000026044)	pcolcea (ENSBSLG00000026054)	vamp2 (ENSBSLG00000026060)	TMLHE (ENSBSLG00000026062)	ENSBSLG00000026066	ENSBSLG00000026103	ENSBSLG00000010723	TMEM164 (ENSBSLG00000010939)	ammecr1 (ENSBSLG00000010959)	kif4 (ENSBSLG00000010982)
Climbing perch	MODERN SPECIES	5	ENSATEG00000010241	ENSATEG00000009906	lhx1b (ENSATEG00000009832)	acaca (ENSATEG00000009623)	tbx2a (ENSATEG00000009530)	ppm1db (ENSATEG00000009495)	ENSATEG00000009428	ENSATEG00000009376	ENSATEG00000009342	ENSATEG00000027525	ENSATEG00000009080	ENSATEG00000009035	ENSATEG00000009029	ENSATEG00000009006	ENSATEG00000008898 #21	ENSATEG00000027376 #22	cldn7b (ENSATEG00000008858) #28	ENSATEG00000008836 #29	ENSATEG00000027454 #29	nlgn2b (ENSATEG00000030106)	ENSATEG00000008791	ENSATEG00000030165	kdm6bb (ENSATEG00000008705)	tmem88a (ENSATEG00000008691)	pcolcea (ENSATEG00000008687)	vamp2 (ENSATEG00000008672)	ENSATEG00000008652	ENSATEG00000008624	ENSATEG00000008573	ENSATEG00000008542	ENSATEG00000008511
Tiger tail seahorse	MODERN SPECIES	83															kcnip1b (ENSHCOG00000001066) #21	npm1a (ENSHCOG00000001059) #22	ENSHCOG00000001054	FGF11 (ENSHCOG00000001048) #29	nlgn2b (ENSHCOG00000001045)	kdm6bb (ENSHCOG00000001038)	tmem88a (ENSHCOG00000001030)	pcolcea (ENSHCOG00000021035)	vamp2 (ENSHCOG00000020994)	mpp1 (ENSHCOG00000020974)	mpp1 (ENSHCOG00000020960)	TMLHE (ENSHCOG00000020935)	ENSHCOG00000020904	GABRA3 (ENSHCOG00000020522)	TMEM164 (ENSHCOG00000020501)	ammecr1 (ENSHCOG00000020486)	kif4 (ENSHCOG00000020465)
Pinecone sodierfish	MODERN SPECIES	5	ENSMMDG00005012395	ENSMMDG00005012407	ENSMMDG00005012909	SEZ6 (ENSMMDG00005012913)	lhx1b (ENSMMDG00005012916)	acaca (ENSMMDG00005013418)	tbx2a (ENSMMDG00005024501)	ppm1db (ENSMMDG00005024503)	ENSMMDG00005024505	ENSMMDG00005024506	PCDH1 (ENSMMDG00005024511)	ENSMMDG00005024515	ENSMMDG00005024518	HRH2 (ENSMMDG00005024520)	kcnip1b (ENSMMDG00005024521) #21	npm1a (ENSMMDG00005024522) #22	tlx3b (ENSMMDG00005024525) #23	ENSMMDG00005024527	ENSMMDG00005024529 #29	nlgn2b (ENSMMDG00005024532)	ENSMMDG00005024562	kdm6bb (ENSMMDG00005024564)	tmem88a (ENSMMDG00005024567)	pcolcea (ENSMMDG00005024568)	vamp2 (ENSMMDG00005024570)	mpp1 (ENSMMDG00005024577)	TMLHE (ENSMMDG00005024589)	ENSMMDG00005024590	GABRA3 (ENSMMDG00005024591)	TMEM164 (ENSMMDG00005024592)	ammecr1 (ENSMMDG00005024593)
Cod	MODERN SPECIES	20	acaca (ENSGMOG00000001741)	ENSGMOG00000026495	ENSGMOG00000034205	ppm1db (ENSGMOG00000010402)	ENSGMOG00000029364	ENSGMOG00000019252	ENSGMOG00000025351	ENSGMOG00000037222	ENSGMOG00000022929	ENSGMOG00000000691	ENSGMOG00000029624	ENSGMOG00000033924	ENSGMOG00000029025	ENSGMOG00000035864	kcnip1b (ENSGMOG00000025934) #21	ENSGMOG00000023207 #22	tlx3b (ENSGMOG00000036799) #23	ENSGMOG00000031803	ENSGMOG00000030845	kdm6bb (ENSGMOG00000004719)	ENSGMOG00000036930	pcolcea (ENSGMOG00000016080)	ENSGMOG00000017326	ENSGMOG00000017296	ENSGMOG00000017276	ENSGMOG00000017259	ENSGMOG00000017243	ENSGMOG00000032929	ENSGMOG00000001835	ENSGMOG00000011572	ENSGMOG00000010915
Protacanthopterygii	ANCESTRAL SPECIES	11	ENSGT00390000010722.f	ENSGT00940000154477.jc.b	ENSGT00940000156324.f.b	ENSGT00940000155521.a.b	ENSGT00950000185626	ENSGT01060000248588.a.c.a.b	ENSGT00390000009004.c	ENSGT00940000163777.b.a.b	ENSGT00940000164173.b.a.c.b	ENSGT00990000210446	ENSGT00950000183116.b.a.a.b.a.a.b	ENSGT00390000017848	ENSGT00940000158761.b	ENSGT00940000165390.b.c.a ##16	ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.a #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT01030000234592.A.b.b.a.b.a.a.b	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b	ENSGT00940000159845.a.b	ENSGT00940000160323.a.b	ENSGT00940000160414.d	ENSGT00940000163776.a.b	ENSGT00940000159264.e	ENSGT00940000159217
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	169		ENSGT00940000155521.a.b.g	ENSGT00950000185626.b	ENSGT01060000248588.a.c.a.b.e	ENSGT00390000009004.c.e	ENSGT00940000155898.u.a	ENSGT00940000159553.a.c	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a.c	ENSGT00940000160554.a.c	ENSGT00970000198378	ENSGT00990000210446	ENSGT00390000017848.a	ENSGT00940000158761.b	ENSGT00940000158048.d.f #21	ENSGT00940000166176.g #22	ENSGT00940000160629.a.a #23	ENSGT00940000163701.b.a.b #27	ENSGT00940000166258.c.b	ENSGT00940000158058.b.g.a #29	ENSGT00940000166430.ab.a	ENSGT00990000209329	ENSGT01030000234592.A.b.b.a.b.b.b.e	ENSGT00940000159845.a.b.g	ENSGT00940000160323.a.b.c.a	ENSGT00940000160414.d	ENSGT00940000163776.a.b.a.a	ENSGT00940000159264.e.c	ENSGT00940000159217.m.a	ENSGT00940000158370	ENSGT00940000164382.a.d
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00940000155521.a.b.g	ENSGT00950000185626.b	ENSGT01060000248588.a.c.a.b.e	ENSGT00390000009004.c.e	ENSGT00940000155898.u.a	ENSGT00940000159553.a.c	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a.c	ENSGT00940000164173.b.a.c.b	ENSGT00940000160554.a.c	ENSGT00970000198378	ENSGT00990000210446	ENSGT00390000017848.a	ENSGT00940000158761.b	ENSGT00940000158048.d.f #21	ENSGT00940000166176.g #22	ENSGT00940000160629.a.a #23	ENSGT00940000163701.b.a.b #27	ENSGT00940000166258.c.b	ENSGT00940000158058.b.g.a.a #29	ENSGT00940000166430.ab.a	ENSGT00990000209329	ENSGT01030000234592.A.b.b.a.b.b.b.e	ENSGT00940000159845.a.b.g	ENSGT00940000160323.a.b.c.a	ENSGT00940000160414.d	ENSGT00940000163776.a.b.a.a	ENSGT00940000159264.e.c	ENSGT00940000159217.m.a	ENSGT00940000164382.a.d	ENSGT00390000005067.b.e
Salmo	ANCESTRAL SPECIES	18	ENSGT00950000185626.b	ENSGT01060000248588.a.c.a.b.e	ENSGT00390000009004.c.e	ENSGT00940000155898.u.a	ENSGT00940000159553.a.c	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a.c	ENSGT00940000164173.b.a.c.b	ENSGT00940000160554.a.c	ENSGT00940000166432.d.i.b.c.a.a.b.a	ENSGT00990000210446	ENSGT00940000164983.c.a.b.a.b.a.a ##12	ENSGT00390000017848.a	ENSGT00940000158761.b.a	ENSGT00940000158048.d.f #21	ENSGT00940000166176.g #22	ENSGT00940000160629.a.a #23	ENSGT00940000163701.b.a.b #27	ENSGT00940000166258.c.b	ENSGT00940000158058.b.g.a.a #29	ENSGT00940000166430.ab.a	ENSGT00390000017226.i.a	ENSGT01030000234592.A.b.b.a.b.b.b.e	ENSGT00940000159845.a.b.g	ENSGT00940000160323.a.b.c.a	ENSGT00940000160414.d	ENSGT00940000163776.a.b.a.a	ENSGT00940000159264.e.c	ENSGT00940000159217.m.a	ENSGT00940000158370	ENSGT00940000164382.a.d
River trout	MODERN SPECIES	10	FBXW11 (ENSSTUG00000018451)	fgf18b (ENSSTUG00000019391)	ENSSTUG00000019401	ENSSTUG00000019410	ENSSTUG00000019430	PCDHAC2 (ENSSTUG00000019447)	ENSSTUG00000019466 ##12	ENSSTUG00000019527	ENSSTUG00000019550	ENSSTUG00000019555	ENSSTUG00000019560 ##12	ENSSTUG00000019563 ##12	ENSSTUG00000019575	HRH2 (ENSSTUG00000019579)	kcnip1b (ENSSTUG00000019589) #21	npm1a (ENSSTUG00000019630) #22	tlx3b (ENSSTUG00000019662) #23	ponzr2 (ENSSTUG00000019666) #27	ENSSTUG00000019669	ENSSTUG00000019671	ENSSTUG00000019679 #29	nlgn2b (ENSSTUG00000019721)	epob (ENSSTUG00000020418)	ENSSTUG00000020432	zgc:172339 (ENSSTUG00000020438)	GIGYF1 (ENSSTUG00000020456)	ENSSTUG00000020946	kdm6bb (ENSSTUG00000020962)	tmem88a (ENSSTUG00000021029)	pcolcea (ENSSTUG00000021032)	per1a (ENSSTUG00000021054)
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000005885	ENSSSAG00000118785	ENSSSAG00000033585	ENSSSAG00000114564	ENSSSAG00000035693	ENSSSAG00000116986	ENSSSAG00000083324	ENSSSAG00000085930	ENSSSAG00000005817	ENSSSAG00000005793 ##12	ENSSSAG00000109342	ENSSSAG00000077223 ##12	ENSSSAG00000005733	ENSSSAG00000005729	kcnip1b (ENSSSAG00000005702) #21	ENSSSAG00000005676 #22	tlx3b (ENSSSAG00000118122) #23	ENSSSAG00000109831	ENSSSAG00000078332 #29	nlgn2b (ENSSSAG00000078054)	ENSSSAG00000078023	zgc:172339 (ENSSSAG00000078021)	ENSSSAG00000077994	ENSSSAG00000083228	kdm6bb (ENSSSAG00000077951)	ENSSSAG00000091850	pcolcea (ENSSSAG00000077920)	per1a (ENSSSAG00000077896)	vamp2 (ENSSSAG00000077883)	and3 (ENSSSAG00000077865)	ENSSSAG00000077856
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00950000185626.b	ENSGT01060000248588.a.c.a.b.e	ENSGT00390000009004.c.e	ENSGT00940000155898.u.a	ENSGT00940000159553.a.c	ENSGT00940000163777.b.a.b	ENSGT00940000164725.a.b.a.c	ENSGT00940000164173.b.a.c.b	ENSGT00940000160554.a.c	ENSGT00970000198378	ENSGT00990000210446	ENSGT00940000164983.c.a.b.a.a ##12	ENSGT00390000017848.a	ENSGT00940000158761.b	ENSGT00940000158048.d.f #21	ENSGT00940000166176.g #22	ENSGT00940000160629.a.a #23	ENSGT00940000163701.b.a.b #27	ENSGT00940000166258.c.b	ENSGT00940000158058.b.g.a.a #29	ENSGT00940000166430.ab.a	ENSGT00990000209329	ENSGT01030000234592.A.b.b.a.b.b.b.e	ENSGT00940000159845.a.b.g	ENSGT00940000160323.a.b.c.a	ENSGT00940000160414.d.b	ENSGT00940000163776.a.b.a.a	ENSGT00940000159264.e.c	ENSGT00940000159217.m.a	ENSGT00940000158370.j	ENSGT00940000164382.a.d
Rainbow trout	MODERN SPECIES	1	trpc7a (ENSOMYG00000039098)	etf1b (ENSOMYG00000040620)	ENSOMYG00000040674	fgf18b (ENSOMYG00000028507)	ENSOMYG00000040701	ENSOMYG00000040718	ENSOMYG00000040713	ENSOMYG00000062921	ENSOMYG00000056316	ENSOMYG00000022678	ENSOMYG00000022562	ENSOMYG00000022574 ##12	ENSOMYG00000076960	ENSOMYG00000022939	kcnip1b (ENSOMYG00000022968) #21	ENSOMYG00000022982 #22	tlx3b (ENSOMYG00000050944) #23	ponzr2 (ENSOMYG00000022997) #27	ENSOMYG00000023013	ENSOMYG00000071845 #29	nlgn2b (ENSOMYG00000023074)	epob (ENSOMYG00000023120)	ENSOMYG00000023137	ENSOMYG00000074380	zgc:172339 (ENSOMYG00000023147)	ENSOMYG00000023341	ENSOMYG00000023667	kdm6bb (ENSOMYG00000023721)	tmem88a (ENSOMYG00000061221)	pcolcea (ENSOMYG00000023743)	ENSOMYG00000054716
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000155521.a.b.g	ENSGT00950000185626.b	ENSGT01060000248588.a.c.a.b.e	ENSGT00390000009004.c.e	ENSGT00940000155898.u.a	ENSGT00940000159553.a.c	ENSGT00940000163777.b.a.b	ENSGT00940000164173.b.a.c.b	ENSGT00940000160554.a.c	ENSGT00970000198378	ENSGT00990000210446	ENSGT00940000164983.c.a.b.a.a ##12	ENSGT00390000017848.a	ENSGT00940000158761.b	ENSGT00940000158048.d.f #21	ENSGT00940000166176.g #22	ENSGT00940000160629.a.a #23	ENSGT00940000163701.b.a.b #27	ENSGT00940000166258.c.b	ENSGT00940000158058.b.g.a.a #29	ENSGT00940000166430.ab.a	ENSGT00990000209329	ENSGT01030000234592.A.b.b.a.b.b.b.e	ENSGT00940000159845.a.b.g	ENSGT00940000160323.a.b.c.a	ENSGT00940000160414.d.b	ENSGT00940000163776.a.b.a.a	ENSGT00940000159264.e.c	ENSGT00940000159217.m.a	ENSGT00940000158370.j	ENSGT00940000164382.a.d
Coho salmon	MODERN SPECIES	20	trpc7a (ENSOKIG00005034328)	etf1b (ENSOKIG00005034172)	FBXW11 (ENSOKIG00005033774)	fgf18b (ENSOKIG00005033724)	ENSOKIG00005033708	ENSOKIG00005033618	PCDHAC2 (ENSOKIG00005033608)	ENSOKIG00005033590	ENSOKIG00005033575	ENSOKIG00005033546 ##12	ENSOKIG00005033450	ENSOKIG00005033392	ENSOKIG00005033368	HRH2 (ENSOKIG00005033357)	kcnip1b (ENSOKIG00005033318) #21	npm1a (ENSOKIG00005033282) #22	tlx3b (ENSOKIG00005033267) #23	ponzr2 (ENSOKIG00005033246) #27	ENSOKIG00005033235	FGF11 (ENSOKIG00005033201) #29	nlgn2b (ENSOKIG00005032525)	ENSOKIG00005032468	zgc:172339 (ENSOKIG00005032462)	GIGYF1 (ENSOKIG00005032422)	EFNB3 (ENSOKIG00005047376)	kdm6bb (ENSOKIG00005047336)	tmem88a (ENSOKIG00005047328)	pcolcea (ENSOKIG00005047313)	per1a (ENSOKIG00005047270)	vamp2 (ENSOKIG00005047245)	and3 (ENSOKIG00005047224)
Chinook salmon	MODERN SPECIES	26	GIGYF1 (ENSOTSG00005005864)	ENSOTSG00005005862	ENSOTSG00005005860	ENSOTSG00005005859	ENSOTSG00005005769	ENSOTSG00005005768	ENSOTSG00005005767	ENSOTSG00005005765 ##8	ENSOTSG00005005764 ##12	ENSOTSG00005005762	pcdh1g26 (ENSOTSG00005005734) ##12	ENSOTSG00005005495	ENSOTSG00005005489	HRH2 (ENSOTSG00005005487)	kcnip1b (ENSOTSG00005005485) #21	npm1a (ENSOTSG00005005483) #22	tlx3b (ENSOTSG00005005481) #23	ponzr2 (ENSOTSG00005005479) #27	ENSOTSG00005005477	ENSOTSG00005005475 #29	nlgn2b (ENSOTSG00005005470)	epob (ENSOTSG00005005467)	ENSOTSG00005005466	zgc:172339 (ENSOTSG00005005464)	GIGYF1 (ENSOTSG00005005461)	EFNB3 (ENSOTSG00005005459)	kdm6bb (ENSOTSG00005005431)	tmem88a (ENSOTSG00005005415)	pcolcea (ENSOTSG00005005401)	per1a (ENSOTSG00005005373)	VAMP2 (ENSOTSG00005005312)
Huchen	MODERN SPECIES	3804														HRH2 (ENSHHUG00000043171)	kcnip1b (ENSHHUG00000043176) #21	npm1a (ENSHHUG00000043217) #22	tlx3b (ENSHHUG00000043225) #23
Salmoninae	ANCESTRAL SPECIES	69															ENSGT00940000158048.d.e #21	ENSGT00940000166176.h #22	ENSGT00940000160629.a.b #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b.b #25	ENSGT00940000163701.b.a.a.a.b.a #25	ENSGT00940000166258.c.a	ENSGT00940000158058.b.g.b #29	ENSGT00940000166430.ab.b	ENSGT00390000017226.i.b	ENSGT01030000234592.A.b.b.a.b.a.a.b	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b.f	ENSGT00940000159845.a.b.h	ENSGT00940000160323.a.b.c.b	ENSGT00940000155202.h.b	ENSGT00940000163776.a.b.a.b
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00940000154495.b.b.b.d	ENSGT00730000111291.b	ENSGT00940000166850.b	ENSGT00940000154191.k.b	ENSGT00950000182881.a.b.a.a.b.d	ENSGT00390000013929.h	ENSGT01050000244888.b.b.a.b.d.d	ENSGT00940000157386.b.c	ENSGT00390000011937.g.a.c	ENSGT00530000064873.a.b	ENSGT00390000016468.a	ENSGT00940000158782.d.b.h	ENSGT00990000212312	ENSGT00940000165390.b.c.a ##16	ENSGT00940000158048.d.e #21	ENSGT00940000166176.h #22	ENSGT00940000160629.a.b #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b.b #25	ENSGT00940000163701.b.a.a.a.b.a #25	ENSGT00940000166258.c.a	ENSGT00940000158058.b.g.a.b #29	ENSGT00940000166430.ab.b	ENSGT00390000017226.i.b	ENSGT01030000234592.A.b.b.a.b.a.a.b	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b.f	ENSGT00940000159845.a.b.h	ENSGT00940000160323.a.b.c.b	ENSGT00940000155202.h.b	ENSGT00940000163776.a.b.a.b
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00730000111291.b	ENSGT00940000166850.b	ENSGT00940000154191.k.b	ENSGT00950000182881.a.b.a.a.b.d	ENSGT00390000013929.h	ENSGT01050000244888.b.b.a.b.d.d	ENSGT00940000157386.b.c	ENSGT00390000011937.g.a.c	ENSGT00530000064873.a.b	ENSGT01000000221771	ENSGT00940000158782.d.b.h	ENSGT00990000212312	ENSGT00940000165390.b.c.a.c ##16	ENSGT00940000165390.b.c.a.d ##16	ENSGT00940000158048.d.e #21	ENSGT00940000166176.h #22	ENSGT00940000160629.a.b #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b.b #25	ENSGT00940000163701.b.a.a.a.b.a.a #25	ENSGT00940000163701.b.a.a.a.b.a.b #25	ENSGT00940000166258.c.a	ENSGT00940000158058.b.g.a.b #29	ENSGT00940000166430.ab.b	ENSGT00390000017226.i.b	ENSGT01030000234592.A.b.b.a.b.a.a.b	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00940000159845.a.b.h	ENSGT00940000160323.a.b.c.b	ENSGT00940000163776.a.b.a.b	ENSGT00940000159264.e.d
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT00730000111291.b	ENSGT00940000166850.b	ENSGT00940000154191.k.b	ENSGT00950000182881.a.b.a.a.b.d	ENSGT00390000013929.h	ENSGT01050000244888.b.b.a.b.d.d	ENSGT00940000157386.b.c	ENSGT00390000011937.g.a.c	ENSGT00530000064873.a.b	ENSGT01000000221771	ENSGT00940000158782.d.b.h	ENSGT00990000212312	ENSGT00940000165390.b.c.a.c ##16	ENSGT00940000165390.b.c.a.d ##16	ENSGT00940000158048.d.e #21	ENSGT00940000166176.h #22	ENSGT00940000160629.a.b #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b.b #25	ENSGT00940000163701.b.a.a.a.b.a.a #25	ENSGT00940000157857.i.b	ENSGT00390000000703.cb	ENSGT00940000169140	ENSGT00390000007844.b.e.b	ENSGT00390000000002.a.a.b.i.b	ENSGT00390000001803.h.a.a	ENSGT00940000156167.a.b	ENSGT00940000155506.f.b	ENSGT00940000164078.a.b.a.a.a	ENSGT00940000159769.a.b.v	ENSGT00940000166125.b
Chinook salmon	MODERN SPECIES	26	TBC1D10A (ENSOTSG00005037960)	PPTC7 (ENSOTSG00005038056)	prnpb (ENSOTSG00005038057)	ENSOTSG00005038058	kcnip3b (ENSOTSG00005038063)	ENSOTSG00005002795	hrh2b (ENSOTSG00005002923) #15	ENSOTSG00005003030 ##16	ENSOTSG00005003045 #16	ENSOTSG00005003051	ENSOTSG00005003057	ENSOTSG00005003062	ENSOTSG00005003064 #16	ENSOTSG00005003066	kcnip1b (ENSOTSG00005003070) #21	npm1a (ENSOTSG00005003077) #22	tlx3b (ENSOTSG00005003081) #23	ugt5g2 (ENSOTSG00005003083) #24	ENSOTSG00005003086 #25	ENSOTSG00005003090 #25	ndst1b (ENSOTSG00005003121)	rps14 (ENSOTSG00005004853)	ENSOTSG00005004856	ENSOTSG00005004857	ENSOTSG00005004858	ENSOTSG00005004859	ENSOTSG00005004861	ENSOTSG00005004862	ENSOTSG00005004864	ENSOTSG00005004888	cdx1b (ENSOTSG00005005825)
Coho salmon	MODERN SPECIES	21	ENSOKIG00005049876	ENSOKIG00005049878	slc35e4 (ENSOKIG00005049880)	ENSOKIG00005049881	ewsr1a (ENSOKIG00005049886)	ENSOKIG00005049914	ENSOKIG00005049946	ENSOKIG00005049968	PPTC7 (ENSOKIG00005049999)	ENSOKIG00005050002	ENSOKIG00005050009	ENSOKIG00005050013	ENSOKIG00005050023 ##16	ENSOKIG00005050033 ##16	kcnip1b (ENSOKIG00005050048) #21	npm1a (ENSOKIG00005050064) #22	tlx3b (ENSOKIG00005050076) #23	ugt5g2 (ENSOKIG00005050080) #24	ENSOKIG00005050083 #25	ENSOKIG00005050109	rps14 (ENSOKIG00005050146)	ENSOKIG00005050159	ENSOKIG00005050165	APBB3 (ENSOKIG00005050169)	SRA1 (ENSOKIG00005050178)	ENSOKIG00005050183	ENSOKIG00005050227	cdx1b (ENSOKIG00005050303)	ENSOKIG00005050312	ENSOKIG00005050326	ENSOKIG00005050328
Rainbow trout	MODERN SPECIES	364	ewsr1a (ENSOMYG00000046894)	ENSOMYG00000047003	ENSOMYG00000069526	aplnrb (ENSOMYG00000047160)	ENSOMYG00000047169	ENSOMYG00000076120	ENSOMYG00000047175	ENSOMYG00000047177	ENSOMYG00000047183	ENSOMYG00000047189	ENSOMYG00000047209 ##16	ENSOMYG00000047241 ##16	prp14 (ENSOMYG00000047232) #16	kcnip1b (ENSOMYG00000047257) #21	ENSOMYG00000067124	npm1a (ENSOMYG00000047285) #22	tlx3b (ENSOMYG00000047290) #23	ugt5g2 (ENSOMYG00000047294) #24	ENSOMYG00000047296 #25	ENSOMYG00000063148	ENSOMYG00000047304 #25	ENSOMYG00000051299	ENSOMYG00000023023 #29	nlgn2b (ENSOMYG00000047326)	ENSOMYG00000054646	epob (ENSOMYG00000047347)	ENSOMYG00000047358	ENSOMYG00000047360	ENSOMYG00000047371	ENSOMYG00000047381	ENSOMYG00000051242
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000156855.d.a	ENSGT00940000154495.b.b.b.d	ENSGT00730000111291.b	ENSGT00940000166850.b	ENSGT00940000154191.k.b	ENSGT00950000182881.a.b.a.a.b.d	ENSGT00390000013929.h	ENSGT01050000244888.b.b.a.b.d.d	ENSGT00940000157386.b.c	ENSGT00390000011937.g.a.c	ENSGT00530000064873.a.b	ENSGT00390000016468.a	ENSGT00940000158782.d.b.h	ENSGT00990000212312	ENSGT00940000158048.d.e #21	ENSGT00940000166176.h #22	ENSGT00940000160629.a.b #23	ENSGT00940000166282.B #24	ENSGT00940000163701.b.a.a.a.b.b #25	ENSGT00940000163701.b.a.a.a.b.a #25	ENSGT01060000253007	ENSGT00940000166258.c.a	ENSGT00940000158058.b.g.a.b #29	ENSGT00940000166430.ab.b	ENSGT00990000209329	ENSGT01030000234592.A.b.b.a.b.a.a.b	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT01030000234592.A.b.b.a.b.b.b.f	ENSGT00940000159845.a.b.h	ENSGT00940000160323.a.b.c.b	ENSGT00940000155202.h.b
River trout	MODERN SPECIES	3	slc35e4 (ENSSTUG00000008004)	ENSSTUG00000008019	ewsr1a (ENSSTUG00000008062)	ENSSTUG00000008101	ENSSTUG00000008545	aplnrb (ENSSTUG00000008552)	TBC1D10A (ENSSTUG00000008566)	PPTC7 (ENSSTUG00000008591)	prnpb (ENSSTUG00000008601)	ENSSTUG00000008603	kcnip3b (ENSSTUG00000008613)	ENSSTUG00000008692	ENSSTUG00000008730 ##16	ENSSTUG00000008886 ##16	kcnip1b (ENSSTUG00000009045) #21	npm1a (ENSSTUG00000009077) #22	tlx3b (ENSSTUG00000009112) #23	ugt5g2 (ENSSTUG00000009127) #24	ENSSTUG00000009136 #25	ENSSTUG00000009144 #25	ENSSTUG00000009148	ENSSTUG00000009157	ENSSTUG00000009164 #29	ENSSTUG00000009185	nlgn2b (ENSSTUG00000009207)	ENSSTUG00000009856	ENSSTUG00000009875	ENSSTUG00000009881	zgc:172339 (ENSSTUG00000009891)	GIGYF1 (ENSSTUG00000009906)	EFNB3 (ENSSTUG00000009960)
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000118105	ewsr1a (ENSSSAG00000050377)	ENSSSAG00000050674	ENSSSAG00000058222	ENSSSAG00000058238	ENSSSAG00000058243	ENSSSAG00000058265	ENSSSAG00000106012	ENSSSAG00000058413	ENSSSAG00000009482	ENSSSAG00000058634	ENSSSAG00000058765	ENSSSAG00000058809 ##16	ENSSSAG00000058932 #16	kcnip1b (ENSSSAG00000058968) #21	npm (ENSSSAG00000059137) #22	tlx3b (ENSSSAG00000116146) #23	ugt5g2 (ENSSSAG00000059171) #24	ENSSSAG00000059179 #25	ENSSSAG00000059192 #25	ENSSSAG00000114024	cldx (ENSSSAG00000059208)	ENSSSAG00000059218 #29	nlgn2b (ENSSSAG00000059295)	ENSSSAG00000062934	ENSSSAG00000062945	ENSSSAG00000062946	ENSSSAG00000062962	ENSSSAG00000089854	ENSSSAG00000063062	tmem88a (ENSSSAG00000087608)
Huchen	MODERN SPECIES	3696															kcnip1b (ENSHHUG00000026577) #21	npm1a (ENSHHUG00000026599) #22	tlx3b (ENSHHUG00000026625) #23
Northern pike	MODERN SPECIES	6	PCDHAC2 (ENSELUG00000013352)	ENSELUG00000031883	ENSELUG00000013511	ENSELUG00000033196	ENSELUG00000029787	ENSELUG00000032793	ENSELUG00000013396	ENSELUG00000017906 #7	pcdh2g13 (ENSELUG00000016731) ##8	ENSELUG00000013431	ENSELUG00000013559	ENSELUG00000013567	HRH2 (ENSELUG00000013591)	ENSELUG00000013643 ##16	kcnip1b (ENSELUG00000013683) #21	npm1a (ENSELUG00000013705) #22	tlx3b (ENSELUG00000001456) #23	ugt5g2 (ENSELUG00000001387) #24	ENSELUG00000013745 #25	ponzr2 (ENSELUG00000013800) #27	cldn7b (ENSELUG00000013837) #28	FGF11 (ENSELUG00000013849) #29	ENSELUG00000025109	nlgn2b (ENSELUG00000013887)	epob (ENSELUG00000014065)	ENSELUG00000014103	ENSELUG00000014111	zgc:172339 (ENSELUG00000014121)	GIGYF1 (ENSELUG00000014244)	EFNB3 (ENSELUG00000014293)	kdm6bb (ENSELUG00000014376)
Osteoglossiformes	ANCESTRAL SPECIES	61															ENSGT00940000158048.d #21	ENSGT00940000166176 #22	ENSGT00940000160629.c #23	ENSGT00940000163701.b.a.a.a.b #25	ENSGT00940000163701.b.a.b #27	ENSGT00940000174541	ENSGT00940000160672 #28	ENSGT00940000158058.b #29	ENSGT00940000166430	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00390000017226.a	ENSGT00510000048483	ENSGT00940000159845.c	ENSGT00940000160323.a.a.b	ENSGT00940000160414.d	ENSGT00940000159264.e	ENSGT00940000164382.a
Asian bonytongue	MODERN SPECIES	19	ENSSFOG00015027021	ENSSFOG00015025658	ENSSFOG00015030064	pcdh2aa1 (ENSSFOG00015033043)	ENSSFOG00015006663	ENSSFOG00015006605	ENSSFOG00015028774	ENSSFOG00015026254	pcdh2aa1 (ENSSFOG00015006688)	pcdh2aa1 (ENSSFOG00015028080)	fgf18a (ENSSFOG00015006833)	FBXW11 (ENSSFOG00015006862)	ETF1 (ENSSFOG00015006929)	ENSSFOG00015006999 #16	kcnip1b (ENSSFOG00015027344) #21	npm1a (ENSSFOG00015007074) #22	tlx3b (ENSSFOG00015007087) #23	ENSSFOG00015007105	ENSSFOG00015007123	ENSSFOG00015007189 #25	ENSSFOG00015007268 #27	ENSSFOG00015007277	ENSSFOG00015025939 #29	NLGN2 (ENSSFOG00015007570)	ENSSFOG00015007609	ENSSFOG00015007621	epob (ENSSFOG00015007661)	pop7 (ENSSFOG00015007957)	GIGYF1 (ENSSFOG00015028408)	efnb3b (ENSSFOG00015027935)	kdm6bb (ENSSFOG00015008038)
P. kingsleyae	MODERN SPECIES	662														ENSPKIG00000024024 #16	kcnip1b (ENSPKIG00000023974) #21	npm1a (ENSPKIG00000023943) #22	tlx3b (ENSPKIG00000023925) #23	ENSPKIG00000023920
Spotted gar	MODERN SPECIES	672	ENSLOCG00000009823	gria1b (ENSLOCG00000009807)	ENSLOCG00000009797	WNT8A (ENSLOCG00000009787)	phykpl (ENSLOCG00000009784)	hnrnpabb (ENSLOCG00000009773)	nme5 (ENSLOCG00000009764)	rack1 (ENSLOCG00000009758)	hrh2a (ENSLOCG00000009751)	ENSLOCG00000009745	DOCK2 (ENSLOCG00000009726)	etf1b (ENSLOCG00000009715)	fbxw11a (ENSLOCG00000009708)	fbxw11a (ENSLOCG00000009701)	fgf18b (ENSLOCG00000009693)	npm1a (ENSLOCG00000009683) #22	tlx3b (ENSLOCG00000009674) #23	kcnip1b (ENSLOCG00000009667) #21	ENSLOCG00000009656	ENSLOCG00000009646	nhp2 (ENSLOCG00000009630)	brd8b (ENSLOCG00000009616)	kif20a (ENSLOCG00000009613)	cdc23 (ENSLOCG00000009602)	gfra3 (ENSLOCG00000009594)	ENSLOCG00000009589	ENSLOCG00000009584	ctbp1 (ENSLOCG00000009571)	spon2a (ENSLOCG00000009562)	KDM3B (ENSLOCG00000009551)	ENSLOCG00000009541