Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000153342.a #7	ENSGT00390000015489 #8	ENSGT00390000012228 #9	ENSGT01030000234610.b.a.a #10	ENSGT01030000234610.b.a.b.a #11	ENSGT01030000234610.b.a.b.b #12	ENSGT00940000162950.c #13	ENSGT00940000156696.B #14	ENSGT00940000157732 #15	ENSGT00390000000909 #16	ENSGT00940000156184 #17	ENSGT00940000161242 #18	ENSGT00390000018550 #19	ENSGT00530000064714 #20	ENSGT00940000155351 #21	ENSGT00940000162030 #22	ENSGT01050000244827.D.b.b #23	ENSGT00530000063534.b #24	ENSGT01030000234563.b.a.b.b.b #25	ENSGT01030000234563.b.a.b.b.a #27	ENSGT00390000015440.a #28	ENSGT00940000157716 #29	ENSGT00940000155257 #31	ENSGT00940000155809 #33	ENSGT00400000024767 #32	ENSGT00940000153352.B.j #34	ENSGT00940000159529 #35	ENSGT00580000081628 #36	ENSGT01030000234642.a.a	ENSGT00390000015948.b	ENSGT00390000009265
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000153342.a #7	ENSGT00390000015489 #8	ENSGT00390000012228 #9	ENSGT01030000234610.b.a.a #10	ENSGT01030000234610.b.a.b.a #11	ENSGT01030000234610.b.a.b.b #12	ENSGT00940000162950.c #13	ENSGT00940000156696.B #14	ENSGT00940000157732 #15	ENSGT00390000000909 #16	ENSGT00940000156184 #17	ENSGT00940000161242 #18	ENSGT00390000018550 #19	ENSGT00530000064714 #20	ENSGT00940000155351 #21	ENSGT00940000162030 #22	ENSGT01050000244827.D.b.b #23	ENSGT00530000063534.b #24	ENSGT01030000234563.b.a.b.b.b #25	ENSGT01030000234563.b.a.b.b.a #27	ENSGT00390000015440.a #28	ENSGT00940000157716 #29	ENSGT00940000155257 #31	ENSGT00940000155809 #33	ENSGT00400000024767 #32	ENSGT00940000153352.B.j #34	ENSGT00940000159529 #35	ENSGT00580000081628 #36	ENSGT01030000234642.a.a	ENSGT00390000015948.b	ENSGT00390000009265
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000153342.a #7	ENSGT00390000015489 #8	ENSGT00390000012228 #9	ENSGT01030000234610.b.a.a #10	ENSGT01030000234610.b.a.b.a #11	ENSGT01030000234610.b.a.b.b #12	ENSGT00940000162950.c #13	ENSGT00940000156696.B #14	ENSGT00940000157732 #15	ENSGT00390000000909 #16	ENSGT00940000156184 #17	ENSGT00940000161242 #18	ENSGT00390000018550 #19	ENSGT00530000064714 #20	ENSGT00940000155351 #21	ENSGT00940000162030 #22	ENSGT01050000244827.D.b.b #23	ENSGT00530000063534.b #24	ENSGT01030000234563.b.a.b.b.b #25	ENSGT01030000234563.b.a.b.b.a #27	ENSGT00390000015440.a #28	ENSGT00940000157716 #29	ENSGT00940000155257 #31	ENSGT00940000155809 #33	ENSGT00400000024767 #32	ENSGT00940000153352.B.j #34	ENSGT00940000159529 #35	ENSGT00580000081628 #36	ENSGT01030000234642.a.a	ENSGT00390000015948.b	ENSGT00390000009265
Steppe mouse	MODERN SPECIES	3428	Taf5 (ENSMSIG00000031481) #7	ENSMSIG00000031479 #8	Pdcd11 (ENSMSIG00000031474) #9	Calhm2 (ENSMSIG00000031473) #10	Calhm1 (ENSMSIG00000031472) #11	Calhm3 (ENSMSIG00000031471) #12	ENSMSIG00000031470 #13	Neurl1a (ENSMSIG00000031466) #14	Sh3pxd2a (ENSMSIG00000031465) #15	Stn1 (ENSMSIG00000031463) #16	Slk (ENSMSIG00000031453) #17	Col17a1 (ENSMSIG00000031440) #18	Sfr1 (ENSMSIG00000031436) #19	Cfap43 (ENSMSIG00000031434) #20	Gsto1 (ENSMSIG00000031433) #21	Gsto2 (ENSMSIG00000031431) #22	Itprip (ENSMSIG00000031430) #23	Cfap58 (ENSMSIG00000031428) #24	Sorcs3 (ENSMSIG00000031425) #25	ENSMSIG00000031421 #26	Sorcs1 (ENSMSIG00000031372) #27	Ins1 (ENSMSIG00000031363) #28	Xpnpep1 (ENSMSIG00000031347) #29	ENSMSIG00000031344 #30	Add3 (ENSMSIG00000031321) #31	ENSMSIG00000031317 #32	Mxi1 (ENSMSIG00000031315) #33	Smndc1 (ENSMSIG00000031313) #34	ENSMSIG00000031310 #35	Smc3 (ENSMSIG00000031304) #36	ENSMSIG00000031302 #37
spretus	MODERN SPECIES	10	Pcgf6 (MGP_SPRETEiJ_G0023969)	Taf5 (MGP_SPRETEiJ_G0023970) #7	Pdcd11 (MGP_SPRETEiJ_G0023971) #9	Calhm2 (MGP_SPRETEiJ_G0023972) #10	Calhm1 (MGP_SPRETEiJ_G0023973) #11	MGP_SPRETEiJ_G0023974 #12	MGP_SPRETEiJ_G0023975 #13	Neurl1a (MGP_SPRETEiJ_G0023976) #14	Sh3pxd2a (MGP_SPRETEiJ_G0023977) #15	Stn1 (MGP_SPRETEiJ_G0023978) #16	Slk (MGP_SPRETEiJ_G0023979) #17	Col17a1 (MGP_SPRETEiJ_G0023980) #18	Sfr1 (MGP_SPRETEiJ_G0023981) #19	Cfap43 (MGP_SPRETEiJ_G0023982) #20	Gsto1 (MGP_SPRETEiJ_G0023983) #21	Gsto2 (MGP_SPRETEiJ_G0023984) #22	Cfap58 (MGP_SPRETEiJ_G0023985) #24	Sorcs3 (MGP_SPRETEiJ_G0023986) #25	Sorcs1 (MGP_SPRETEiJ_G0023987) #27	Ins1 (MGP_SPRETEiJ_G0023988) #28	Xpnpep1 (MGP_SPRETEiJ_G0023989) #29	Add3 (MGP_SPRETEiJ_G0023990) #31	Mxi1 (MGP_SPRETEiJ_G0023991) #33	MGP_SPRETEiJ_G0023992 #32	Smndc1 (MGP_SPRETEiJ_G0023993) #34	Dusp5 (MGP_SPRETEiJ_G0023994) #35	Smc3 (MGP_SPRETEiJ_G0023995) #36	Rbm20 (MGP_SPRETEiJ_G0023996)	Pdcd4 (MGP_SPRETEiJ_G0023997)	Bbip1 (MGP_SPRETEiJ_G0023998)	Shoc2 (MGP_SPRETEiJ_G0023999)
Mouse	MODERN SPECIES	10	Pcgf6 (ENSMUSG00000025050)	Taf5 (ENSMUSG00000025049) #7	Atp5md (ENSMUSG00000071528) #8	Pdcd11 (ENSMUSG00000025047) #9	Calhm2 (ENSMUSG00000033033) #10	Calhm1 (ENSMUSG00000079258) #11	Calhm3 (ENSMUSG00000094219) #12	Neurl1a (ENSMUSG00000006435) #14	Sh3pxd2a (ENSMUSG00000053617) #15	Stn1 (ENSMUSG00000042694) #16	Slk (ENSMUSG00000025060) #17	Col17a1 (ENSMUSG00000025064) #18	Sfr1 (ENSMUSG00000025066) #19	Cfap43 (ENSMUSG00000044948) #20	Gsto1 (ENSMUSG00000025068) #21	Gsto2 (ENSMUSG00000025069) #22	Itprip (ENSMUSG00000117975) #23	Cfap58 (ENSMUSG00000046585) #24	Sorcs3 (ENSMUSG00000063434) #25	Sorcs1 (ENSMUSG00000043531) #27	Ins1 (ENSMUSG00000035804) #28	Xpnpep1 (ENSMUSG00000025027) #29	Add3 (ENSMUSG00000025026) #31	Mxi1 (ENSMUSG00000025025) #33	Smndc1 (ENSMUSG00000025024) #34	Dusp5 (ENSMUSG00000034765) #35	Nutf2-ps1 (ENSMUSG00000071497)	Smc3 (ENSMUSG00000024974) #36	Rbm20 (ENSMUSG00000043639)	Pdcd4 (ENSMUSG00000024975)	Bbip1 (ENSMUSG00000084957)
Ryukyu mouse	MODERN SPECIES	10	Pcgf6 (MGP_CAROLIEiJ_G0023048)	Taf5 (MGP_CAROLIEiJ_G0023049) #7	Pdcd11 (MGP_CAROLIEiJ_G0023050) #9	Calhm2 (MGP_CAROLIEiJ_G0023051) #10	Calhm1 (MGP_CAROLIEiJ_G0023052) #11	Calhm3 (MGP_CAROLIEiJ_G0023053) #12	MGP_CAROLIEiJ_G0023054 #13	Neurl1a (MGP_CAROLIEiJ_G0023055) #14	Sh3pxd2a (MGP_CAROLIEiJ_G0023056) #15	Stn1 (MGP_CAROLIEiJ_G0023057) #16	Slk (MGP_CAROLIEiJ_G0023058) #17	Col17a1 (MGP_CAROLIEiJ_G0023059) #18	Sfr1 (MGP_CAROLIEiJ_G0023060) #19	Itprip (MGP_CAROLIEiJ_G0023061) #23	Gsto1 (MGP_CAROLIEiJ_G0023062) #21	Gsto2 (MGP_CAROLIEiJ_G0023063) #22	Cfap58 (MGP_CAROLIEiJ_G0023064) #24	Sorcs3 (MGP_CAROLIEiJ_G0023065) #25	Sorcs1 (MGP_CAROLIEiJ_G0023066) #27	Ins1 (MGP_CAROLIEiJ_G0023067) #28	Xpnpep1 (MGP_CAROLIEiJ_G0023068) #29	Add3 (MGP_CAROLIEiJ_G0023069) #31	Mxi1 (MGP_CAROLIEiJ_G0023070) #33	MGP_CAROLIEiJ_G0023071 #32	MGP_CAROLIEiJ_G0023072 ##34	Dusp5 (MGP_CAROLIEiJ_G0023073) #35	Smc3 (MGP_CAROLIEiJ_G0023074) #36	Rbm20 (MGP_CAROLIEiJ_G0023075)	Pdcd4 (MGP_CAROLIEiJ_G0023076)	Bbip1 (MGP_CAROLIEiJ_G0023077)	Shoc2 (MGP_CAROLIEiJ_G0023078)