Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Glires	ANCESTRAL SPECIES	3	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Muroidea	ANCESTRAL SPECIES		ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.a.a ##25	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00950000183608 #33
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.a.a ##25	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34
Prairie vole	MODERN SPECIES	15	Rnf227 (ENSMOCG00000013838) #7	Chd3 (ENSMOCG00000004848) #8	ENSMOCG00000020842 #9	Cyb5d1 (ENSMOCG00000016201) #10	Naa38 (ENSMOCG00000002129) #11	Tmem88 (ENSMOCG00000001201) #12	Kdm6b (ENSMOCG00000009811) #13	Dnah2 (ENSMOCG00000003037) #14	Efnb3 (ENSMOCG00000006928) #15	Wrap53 (ENSMOCG00000015971) #16	Trp53 (ENSMOCG00000020008) #17	Atp1b2 (ENSMOCG00000009972) #18	Shbg (ENSMOCG00000013734) #19	Sat2 (ENSMOCG00000020053) #20	Fxr2 (ENSMOCG00000019049) #21	Sox15 (ENSMOCG00000001244) #22	ENSMOCG00000019979 #23	Cd68 (ENSMOCG00000011137) #24	Eif4a1 (ENSMOCG00000007064) #25	Senp3 (ENSMOCG00000017728) #26	ENSMOCG00000022801 #27	Polr2a (ENSMOCG00000018279) #28	Slc35g3 (ENSMOCG00000010288) #29	ENSMOCG00000019073 #30	Chrnb1 (ENSMOCG00000022627) #31	Fgf11 (ENSMOCG00000021518) #32	ENSMOCG00000016882 #33	Tmem102 (ENSMOCG00000016206) #34	Spem3 (ENSMOCG00000022965) #35	Spem2 (ENSMOCG00000017128) #36	Spem1 (ENSMOCG00000006619) #37
Northern American deer mouse	MODERN SPECIES	21	Kcnab3 (ENSPEMG00000012211)	ENSPEMG00000029356	Chd3 (ENSPEMG00000014262) #8	Cyb5d1 (ENSPEMG00000027957) #10	Naa38 (ENSPEMG00000015014) #11	Tmem88 (ENSPEMG00000025255) #12	Kdm6b (ENSPEMG00000010257) #13	Dnah2 (ENSPEMG00000004906) #14	Efnb3 (ENSPEMG00000029907) #15	Wrap53 (ENSPEMG00000009467) #16	ENSPEMG00000011289 #17	Atp1b2 (ENSPEMG00000009297) #18	Shbg (ENSPEMG00000008069) #19	Sat2 (ENSPEMG00000019261) #20	Fxr2 (ENSPEMG00000019239) #21	Sox15 (ENSPEMG00000019249) #22	Mpdu1 (ENSPEMG00000019060) #23	ENSPEMG00000012269	Eif4a1 (ENSPEMG00000009100) ##25	Senp3 (ENSPEMG00000019189) #26	Tnfsf13 (ENSPEMG00000019217) #27	Tnfsf12 (ENSPEMG00000024526)	Polr2a (ENSPEMG00000012521) #28	Slc35g3 (ENSPEMG00000012096) #29	Zbtb4 (ENSPEMG00000030856) #30	Chrnb1 (ENSPEMG00000016983) #31	Fgf11 (ENSPEMG00000026103) #32	Tmem102 (ENSPEMG00000018682) #34	ENSPEMG00000027133 #33	Spem2 (ENSPEMG00000001259) #36	Spem1 (ENSPEMG00000010523) #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.b.b ##25	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00950000183608 #33	ENSGT00940000164517 #35
Chinese hamster chok1gshd	MODERN SPECIES	229	Rnf227 (ENSCGRG00001005462) #7	Chd3 (ENSCGRG00001011306) #8	ENSCGRG00001023929 #9	Cyb5d1 (ENSCGRG00001015505) #10	Naa38 (ENSCGRG00001016403) #11	Tmem88 (ENSCGRG00001018524) #12	Kdm6b (ENSCGRG00001023895) #13	Dnah2 (ENSCGRG00001023725) #14	Efnb3 (ENSCGRG00001004575) #15	Wrap53 (ENSCGRG00001009844) #16	Trp53 (ENSCGRG00001012952) #17	Atp1b2 (ENSCGRG00001016825) #18	Shbg (ENSCGRG00001024732) #19	Sat2 (ENSCGRG00001024470) #20	Fxr2 (ENSCGRG00001000488) #21	Sox15 (ENSCGRG00001006850) #22	Lec35 (ENSCGRG00001008612) #23	ENSCGRG00001006775	Eif4a1 (ENSCGRG00001009326) #25	Senp3 (ENSCGRG00001001055) #26	Tnfsf13 (ENSCGRG00001000520) #27	Tnfsf12 (ENSCGRG00001001875)	Polr2a (ENSCGRG00001003538) #28	Slc35g3 (ENSCGRG00001010297) #29	Zbtb4 (ENSCGRG00001020458) #30	Chrnb1 (ENSCGRG00001021737) #31	Fgf11 (ENSCGRG00001016734) #32	Tmem102 (ENSCGRG00001018840) #34	ENSCGRG00001022749 #33	Spem3 (ENSCGRG00001023786) #35	Spem2 (ENSCGRG00001024800) #36
Murinae	ANCESTRAL SPECIES	7	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.b #25	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.a.a ##25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00950000183608 #33
Mus	ANCESTRAL SPECIES	2	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36	ENSGT00510000049389 #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36	ENSGT00510000049389 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36	ENSGT00510000049389 #37
Mouse	MODERN SPECIES	2	Kcnab3 (ENSMUSG00000018470)	Rnf227 (ENSMUSG00000043419) #7	Chd3 (ENSMUSG00000018474) #8	Cyb5d1 (ENSMUSG00000044795) #10	Naa38 (ENSMUSG00000059278) #11	Tmem88 (ENSMUSG00000045377) #12	Kdm6b (ENSMUSG00000018476) #13	Dnah2 (ENSMUSG00000005237) #14	Efnb3 (ENSMUSG00000003934) #15	Wrap53 (ENSMUSG00000041346) #16	Trp53 (ENSMUSG00000059552) #17	Atp1b2 (ENSMUSG00000041329) #18	Shbg (ENSMUSG00000005202) #19	Sat2 (ENSMUSG00000069835) #20	Fxr2 (ENSMUSG00000018765) #21	Sox15 (ENSMUSG00000041287) #22	Mpdu1 (ENSMUSG00000018761) #23	Cd68 (ENSMUSG00000018774) #24	Eif4a1 (ENSMUSG00000059796) #25	Senp3 (ENSMUSG00000005204) #26	Tnfsfm13 (ENSMUSG00000018752)	Tnfsf13 (ENSMUSG00000089669) #27	Tnfsf12 (ENSMUSG00000097328)	Polr2a (ENSMUSG00000005198) #28	Slc35g3 (ENSMUSG00000018776) #29	Zbtb4 (ENSMUSG00000018750) #30	Chrnb1 (ENSMUSG00000041189) #31	Fgf11 (ENSMUSG00000042826) #32	Tmem102 (ENSMUSG00000089876) #34	Spem3 (ENSMUSG00000109737) #35	Spem2 (ENSMUSG00000044084) #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00860000136019 #9	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775 #24	ENSGT00940000153889.e.a.b.a.a ##25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36	ENSGT00510000049389 #37
spretus	MODERN SPECIES	2	Chd3 (MGP_SPRETEiJ_G0017400) #8	MGP_SPRETEiJ_G0017401 #9	MGP_SPRETEiJ_G0017402 #10	MGP_SPRETEiJ_G0017403 #10	Naa38 (MGP_SPRETEiJ_G0017404) #11	Tmem88 (MGP_SPRETEiJ_G0017405) #12	Kdm6b (MGP_SPRETEiJ_G0017406) #13	Dnah2 (MGP_SPRETEiJ_G0017407) #14	Efnb3 (MGP_SPRETEiJ_G0017408) #15	Wrap53 (MGP_SPRETEiJ_G0017409) #16	Trp53 (MGP_SPRETEiJ_G0017410) #17	Atp1b2 (MGP_SPRETEiJ_G0017411) #18	Shbg (MGP_SPRETEiJ_G0017412) #19	Sat2 (MGP_SPRETEiJ_G0017413) #20	Fxr2 (MGP_SPRETEiJ_G0017414) #21	Sox15 (MGP_SPRETEiJ_G0017415) #22	Mpdu1 (MGP_SPRETEiJ_G0017416) #23	Cd68 (MGP_SPRETEiJ_G0017417) #24	MGP_SPRETEiJ_G0017418	Senp3 (MGP_SPRETEiJ_G0017419) #26	MGP_SPRETEiJ_G0017420 #27	Tnfsf13 (MGP_SPRETEiJ_G0017421) #27	Tnfsf12 (MGP_SPRETEiJ_G0017422)	Polr2a (MGP_SPRETEiJ_G0017423) #28	Slc35g3 (MGP_SPRETEiJ_G0017424) #29	Zbtb4 (MGP_SPRETEiJ_G0017425) #30	Chrnb1 (MGP_SPRETEiJ_G0017426) #31	Fgf11 (MGP_SPRETEiJ_G0017427) #32	Tmem102 (MGP_SPRETEiJ_G0017428) #34	Spem2 (MGP_SPRETEiJ_G0017429) #36	Spem1 (MGP_SPRETEiJ_G0017430) #37
Steppe mouse	MODERN SPECIES	2607	Kcnab3 (ENSMSIG00000026433)	Rnf227 (ENSMSIG00000026421) #7	Chd3 (ENSMSIG00000026278) #8	Cyb5d1 (ENSMSIG00000026258) #10	Naa38 (ENSMSIG00000026252) #11	Tmem88 (ENSMSIG00000026250) #12	Kdm6b (ENSMSIG00000026234) #13	Dnah2 (ENSMSIG00000026044) #14	Efnb3 (ENSMSIG00000026027) #15	Wrap53 (ENSMSIG00000026006) #16	ENSMSIG00000025886 #17	Atp1b2 (ENSMSIG00000025884) #18	Shbg (ENSMSIG00000025876) #19	ENSMSIG00000025872 #20	Fxr2 (ENSMSIG00000025838) #21	Sox15 (ENSMSIG00000025831) #22	Mpdu1 (ENSMSIG00000025820) #23	Cd68 (ENSMSIG00000025801) #24	ENSMSIG00000025748 ##25	Senp3 (ENSMSIG00000025720) #26	ENSMSIG00000025651 #27	Polr2a (ENSMSIG00000025463) #28	Slc35g3 (ENSMSIG00000025457) #29	Zbtb4 (ENSMSIG00000025449) #30	Chrnb1 (ENSMSIG00000025437) #31	Fgf11 (ENSMSIG00000025425) #32	Tmem102 (ENSMSIG00000025413) #34	Spem3 (ENSMSIG00000025405) #35	Spem2 (ENSMSIG00000025397) #36	Spem1 (ENSMSIG00000025386) #37	Nlgn2 (ENSMSIG00000025351)
Ryukyu mouse	MODERN SPECIES	2	Chd3 (MGP_CAROLIEiJ_G0016564) #8	MGP_CAROLIEiJ_G0016565	MGP_CAROLIEiJ_G0016566 #10	MGP_CAROLIEiJ_G0016567 #10	Naa38 (MGP_CAROLIEiJ_G0016568) #11	Tmem88 (MGP_CAROLIEiJ_G0016569) #12	Kdm6b (MGP_CAROLIEiJ_G0016570) #13	Dnah2 (MGP_CAROLIEiJ_G0016571) #14	Efnb3 (MGP_CAROLIEiJ_G0016572) #15	Wrap53 (MGP_CAROLIEiJ_G0016573) #16	Trp53 (MGP_CAROLIEiJ_G0016574) #17	Atp1b2 (MGP_CAROLIEiJ_G0016575) #18	Shbg (MGP_CAROLIEiJ_G0016576) #19	Sat2 (MGP_CAROLIEiJ_G0016577) #20	Fxr2 (MGP_CAROLIEiJ_G0016578) #21	Sox15 (MGP_CAROLIEiJ_G0016579) #22	Mpdu1 (MGP_CAROLIEiJ_G0016580) #23	Cd68 (MGP_CAROLIEiJ_G0016581) #24	MGP_CAROLIEiJ_G0016582	Senp3 (MGP_CAROLIEiJ_G0016583) #26	MGP_CAROLIEiJ_G0016584 #27	Tnfsf13 (MGP_CAROLIEiJ_G0016585) #27	Tnfsf12 (MGP_CAROLIEiJ_G0016586)	Polr2a (MGP_CAROLIEiJ_G0016587) #28	Slc35g3 (MGP_CAROLIEiJ_G0016588) #29	Zbtb4 (MGP_CAROLIEiJ_G0016589) #30	Chrnb1 (MGP_CAROLIEiJ_G0016590) #31	Fgf11 (MGP_CAROLIEiJ_G0016591) #32	Tmem102 (MGP_CAROLIEiJ_G0016592) #34	Spem2 (MGP_CAROLIEiJ_G0016593) #36	Spem1 (MGP_CAROLIEiJ_G0016594) #37
Shrew mouse	MODERN SPECIES	5	Chd3 (MGP_PahariEiJ_G0017695) #8	MGP_PahariEiJ_G0017696	MGP_PahariEiJ_G0017697 #10	MGP_PahariEiJ_G0017698 #10	Naa38 (MGP_PahariEiJ_G0017699) #11	Tmem88 (MGP_PahariEiJ_G0017700) #12	Kdm6b (MGP_PahariEiJ_G0017701) #13	Dnah2 (MGP_PahariEiJ_G0017702) #14	Efnb3 (MGP_PahariEiJ_G0017703) #15	Wrap53 (MGP_PahariEiJ_G0017704) #16	Trp53 (MGP_PahariEiJ_G0017705) #17	Atp1b2 (MGP_PahariEiJ_G0017706) #18	MGP_PahariEiJ_G0017707 #19	Sat2 (MGP_PahariEiJ_G0017708) #20	Fxr2 (MGP_PahariEiJ_G0017709) #21	Sox15 (MGP_PahariEiJ_G0017710) #22	Mpdu1 (MGP_PahariEiJ_G0017711) #23	Cd68 (MGP_PahariEiJ_G0017712) #24	MGP_PahariEiJ_G0017713 ##25	Senp3 (MGP_PahariEiJ_G0017714) #26	MGP_PahariEiJ_G0017715 #27	Tnfsf13 (MGP_PahariEiJ_G0017716) #27	Tnfsf12 (MGP_PahariEiJ_G0017717)	Polr2a (MGP_PahariEiJ_G0017718) #28	Slc35g3 (MGP_PahariEiJ_G0017719) #29	Zbtb4 (MGP_PahariEiJ_G0017720) #30	Chrnb1 (MGP_PahariEiJ_G0017721) #31	Fgf11 (MGP_PahariEiJ_G0017722) #32	Tmem102 (MGP_PahariEiJ_G0017723) #34	Spem2 (MGP_PahariEiJ_G0017724) #36	Spem1 (MGP_PahariEiJ_G0017725) #37
Rat	MODERN SPECIES	1	Kcnab3 (ENSRNOG00000008480)	Rnf227 (ENSRNOG00000021540) #7	Chd3 (ENSRNOG00000009722) #8	Cyb5d1 (ENSRNOG00000066275) #10	Naa38 (ENSRNOG00000009823) #11	Tmem88 (ENSRNOG00000009870) #12	Kdm6b (ENSRNOG00000037613) #13	Dnah2 (ENSRNOG00000052688) #14	Efnb3 (ENSRNOG00000010320) #15	Wrap53 (ENSRNOG00000010520) #16	Tp53 (ENSRNOG00000010756) #17	Atp1b2 (ENSRNOG00000011227) #18	Shbg (ENSRNOG00000011357) #19	Sat2 (ENSRNOG00000011714) #20	Fxr2 (ENSRNOG00000011876) #21	Sox15 (ENSRNOG00000012155) #22	Mpdu1 (ENSRNOG00000012162) #23	Cd68 (ENSRNOG00000037563)	Eif4a1 (ENSRNOG00000030628) ##25	Senp3 (ENSRNOG00000013746) #26	Tnfsf13 (ENSRNOG00000014171) #27	Tnfsf12 (ENSRNOG00000045670)	Polr2a (ENSRNOG00000028834) #28	Slc35g3 (ENSRNOG00000014519) #29	Zbtb4 (ENSRNOG00000014689) #30	Chrnb1 (ENSRNOG00000014698) #31	Fgf11 (ENSRNOG00000014882) #32	Tmem102 (ENSRNOG00000015057) #34	ENSRNOG00000064962 #33	Spem3 (ENSRNOG00000069891) #35	Spem2 (ENSRNOG00000058939) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1746	Kcnab3 (ENSNGAG00000020938)	Rnf227 (ENSNGAG00000021827) #7	Chd3 (ENSNGAG00000000773) #8	ENSNGAG00000012476 #9	Cyb5d1 (ENSNGAG00000017998) #10	Naa38 (ENSNGAG00000019042) #11	Tmem88 (ENSNGAG00000019276) #12	Kdm6b (ENSNGAG00000002609) #13	Dnah2 (ENSNGAG00000015592) #14	Efnb3 (ENSNGAG00000000608) #15	Wrap53 (ENSNGAG00000001849) #16	Tp53 (ENSNGAG00000010608) #17	Atp1b2 (ENSNGAG00000011555) #18	Sat2 (ENSNGAG00000014713) #20	Fxr2 (ENSNGAG00000016236) #21	Sox15 (ENSNGAG00000001407) #22	Mpdu1 (ENSNGAG00000002289) #23	ENSNGAG00000017735	Eif4a1 (ENSNGAG00000018330) #25	Senp3 (ENSNGAG00000019462) #26	ENSNGAG00000021296 #27	Polr2a (ENSNGAG00000002543) #28	Slc35g3 (ENSNGAG00000015839) #29	Zbtb4 (ENSNGAG00000016971) #30	Chrnb1 (ENSNGAG00000018008) #31	Fgf11 (ENSNGAG00000018287) #32	Tmem102 (ENSNGAG00000018630) #34	Spem3 (ENSNGAG00000019102) #35	Spem2 (ENSNGAG00000020043) #36	Spem1 (ENSNGAG00000005715) #37	Nlgn2 (ENSNGAG00000009216)
Lesser Egyptian jerboa	MODERN SPECIES	168	Trappc1 (ENSJJAG00000000666)	Kcnab3 (ENSJJAG00000007965)	Chd3 (ENSJJAG00000017633) #8	Cyb5d1 (ENSJJAG00000012580) #10	Naa38 (ENSJJAG00000013236) #11	Tmem88 (ENSJJAG00000013316) #12	ENSJJAG00000014228 #13	Dnah2 (ENSJJAG00000019886) #14	Efnb3 (ENSJJAG00000011348) #15	Wrap53 (ENSJJAG00000011669) #16	Trp53 (ENSJJAG00000012331) #17	Atp1b2 (ENSJJAG00000013283) #18	Shbg (ENSJJAG00000014834) #19	Sat2 (ENSJJAG00000015219) #20	Fxr2 (ENSJJAG00000016434) #21	Sox15 (ENSJJAG00000016980) #22	Mpdu1 (ENSJJAG00000020318) #23	ENSJJAG00000022204	Eif4a1 (ENSJJAG00000022783) #25	ENSJJAG00000000114 #26	ENSJJAG00000006459 #27	Polr2a (ENSJJAG00000013049) #28	Slc35g3 (ENSJJAG00000015077) #29	ENSJJAG00000015430 #30	Chrnb1 (ENSJJAG00000015708) #31	ENSJJAG00000015954 #32	Tmem102 (ENSJJAG00000016211) #34	Spem2 (ENSJJAG00000016321) #36	Spem1 (ENSJJAG00000016635) #37	Nlgn2 (ENSJJAG00000020774)	Tmem256 (ENSJJAG00000020908)
Kangaroo rat	MODERN SPECIES	338	Kcnab3 (ENSDORG00000010720)	Rnf227 (ENSDORG00000010719) #7	Chd3 (ENSDORG00000010713) #8	Cyb5d1 (ENSDORG00000023948) #10	Naa38 (ENSDORG00000010169) #11	Tmem88 (ENSDORG00000025174) #12	Kdm6b (ENSDORG00000010167) #13	Dnah2 (ENSDORG00000008370) #14	Efnb3 (ENSDORG00000026303) #15	Wrap53 (ENSDORG00000008488) #16	Trp53 (ENSDORG00000026783) #17	Atp1b2 (ENSDORG00000025939) #18	ENSDORG00000029595	Sat2 (ENSDORG00000029725) #20	Fxr2 (ENSDORG00000014232) #21	Sox15 (ENSDORG00000014230) #22	Mpdu1 (ENSDORG00000014229) #23	ENSDORG00000014227	Eif4a1 (ENSDORG00000014225) #25	Senp3 (ENSDORG00000014223) #26	ENSDORG00000014221 #27	Polr2a (ENSDORG00000008667) #28	Slc35g3 (ENSDORG00000028094) #29	ENSDORG00000026747 #30	Chrnb1 (ENSDORG00000008663) #31	Fgf11 (ENSDORG00000008661) #32	Tmem102 (ENSDORG00000008659) #34	Spem2 (ENSDORG00000008657) #36	Spem1 (ENSDORG00000008656) #37	Nlgn2 (ENSDORG00000008653)	Neurl4 (ENSDORG00000000321)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Marmotini	ANCESTRAL SPECIES	42	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35	ENSGT00510000049558 #36
Marmotini_b	ANCESTRAL SPECIES	35	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.a ##25	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT00950000183608 #33	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00940000164517 #35
Squirrel	MODERN SPECIES	195	RNF227 (ENSSTOG00000026440) #7	CHD3 (ENSSTOG00000025907) #8	CYB5D1 (ENSSTOG00000001060) #10	TMEM88 (ENSSTOG00000001057) #12	NAA38 (ENSSTOG00000025950) #11	KDM6B (ENSSTOG00000019400) #13	DNAH2 (ENSSTOG00000002487) #14	EFNB3 (ENSSTOG00000029036) #15	WRAP53 (ENSSTOG00000002484) #16	TP53 (ENSSTOG00000022774) #17	ATP1B2 (ENSSTOG00000019448) #18	SHBG (ENSSTOG00000029233) #19	SAT2 (ENSSTOG00000005681) #20	FXR2 (ENSSTOG00000005657) #21	MPDU1 (ENSSTOG00000005636) #23	SOX15 (ENSSTOG00000005654) #22	EIF4A1 (ENSSTOG00000024814) #25	SENP3 (ENSSTOG00000001835) #26	TNFSF13 (ENSSTOG00000034739) #27	TNFSF12 (ENSSTOG00000005614)	POLR2A (ENSSTOG00000001304) #28	ENSSTOG00000022540 #29	ENSSTOG00000000346 #30	CHRNB1 (ENSSTOG00000000341) #31	FGF11 (ENSSTOG00000000339) #32	TMEM102 (ENSSTOG00000000338) #34	SPEM3 (ENSSTOG00000033242) #35	SPEM2 (ENSSTOG00000030621) #36	SPEM1 (ENSSTOG00000031005) #37	NLGN2 (ENSSTOG00000000335)	TMEM256 (ENSSTOG00000007712)
Arctic ground squirrel	MODERN SPECIES	77	TRAPPC1 (ENSUPAG00010016002)	KCNAB3 (ENSUPAG00010015981)	CHD3 (ENSUPAG00010015846) #8	CYB5D1 (ENSUPAG00010015824) #10	NAA38 (ENSUPAG00010015814) #11	TMEM88 (ENSUPAG00010015803) #12	KDM6B (ENSUPAG00010015706) #13	DNAH2 (ENSUPAG00010015485) #14	EFNB3 (ENSUPAG00010015466) #15	WRAP53 (ENSUPAG00010015444) #16	TP53 (ENSUPAG00010015398) #17	ATP1B2 (ENSUPAG00010015380) #18	SHBG (ENSUPAG00010015369) #19	SAT2 (ENSUPAG00010015359) #20	FXR2 (ENSUPAG00010015345) #21	SOX15 (ENSUPAG00010015340) #22	MPDU1 (ENSUPAG00010015329) #23	CD68 (ENSUPAG00010015311)	ENSUPAG00010015286 ##25	SENP3 (ENSUPAG00010015274) #26	TNFSF13 (ENSUPAG00010015271) #27	TNFSF12 (ENSUPAG00010015258)	POLR2A (ENSUPAG00010015140) #28	ENSUPAG00010015133 #29	ZBTB4 (ENSUPAG00010015112) #30	CHRNB1 (ENSUPAG00010015072) #31	FGF11 (ENSUPAG00010015051) #32	ENSUPAG00010015030 #33	TMEM102 (ENSUPAG00010015024) #34	ENSUPAG00010014988 #36	NLGN2 (ENSUPAG00010014953)
Alpin marmot	MODERN SPECIES	92	CNTROB (ENSMMMG00000020034)	TRAPPC1 (ENSMMMG00000020030)	KCNAB3 (ENSMMMG00000020007)	CHD3 (ENSMMMG00000019936) #8	CYB5D1 (ENSMMMG00000019930) #10	NAA38 (ENSMMMG00000019920) #11	TMEM88 (ENSMMMG00000019917) #12	KDM6B (ENSMMMG00000019902) #13	EFNB3 (ENSMMMG00000019770) #15	WRAP53 (ENSMMMG00000019760) #16	TP53 (ENSMMMG00000019747) #17	ATP1B2 (ENSMMMG00000019742) #18	SHBG (ENSMMMG00000019737) #19	SAT2 (ENSMMMG00000019728) #20	FXR2 (ENSMMMG00000019720) #21	SOX15 (ENSMMMG00000019717) #22	MPDU1 (ENSMMMG00000019711) #23	CD68 (ENSMMMG00000019708)	EIF4A1 (ENSMMMG00000019682) #25	SENP3 (ENSMMMG00000019674) #26	TNFSF13 (ENSMMMG00000019673) #27	TNFSF12 (ENSMMMG00000019660)	POLR2A (ENSMMMG00000019616) #28	ENSMMMG00000019610 #29	ZBTB4 (ENSMMMG00000019607) #30	CHRNB1 (ENSMMMG00000019597) #31	FGF11 (ENSMMMG00000019583) #32	ENSMMMG00000019577	SPEM2 (ENSMMMG00000019557) #36	SPEM1 (ENSMMMG00000019555) #37	NLGN2 (ENSMMMG00000019538)
Eurasian red squirrel	MODERN SPECIES	12	TRAPPC1 (ENSSVLG00005013628)	KCNAB3 (ENSSVLG00005013744)	RNF227 (ENSSVLG00005013817) #7	CHD3 (ENSSVLG00005013898) #8	CYB5D1 (ENSSVLG00005013988) #10	NAA38 (ENSSVLG00005014059) #11	TMEM88 (ENSSVLG00005014138) #12	KDM6B (ENSSVLG00005014210) #13	EFNB3 (ENSSVLG00005015242) #15	WRAP53 (ENSSVLG00005015335) #16	TP53 (ENSSVLG00005015536) #17	ATP1B2 (ENSSVLG00005015878) #18	SHBG (ENSSVLG00005015979) #19	SAT2 (ENSSVLG00005016345) #20	FXR2 (ENSSVLG00005016396) #21	SOX15 (ENSSVLG00005016448) #22	MPDU1 (ENSSVLG00005016491) #23	CD68 (ENSSVLG00005016549)	EIF4A1 (ENSSVLG00005016680) #25	SENP3 (ENSSVLG00005017018) #26	ENSSVLG00005017113 #27	POLR2A (ENSSVLG00005017374) #28	ENSSVLG00005006468 #29	ZBTB4 (ENSSVLG00005006487) #30	CHRNB1 (ENSSVLG00005006512) #31	ENSSVLG00005006577 #32	TMEM102 (ENSSVLG00005006623) #34	SPEM2 (ENSSVLG00005006720) #36	SPEM1 (ENSSVLG00005006743) #37	NLGN2 (ENSSVLG00005006780)	TMEM256 (ENSSVLG00005006818)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00510000049558 #36	ENSGT00510000049389 #37	ENSGT00940000160598
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00510000049558 #36	ENSGT00510000049389 #37	ENSGT00940000160598
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.a ##25	ENSGT00940000153889.e.a.b.a.b ##25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00930000151033 #28	ENSGT00940000153249.b.c #29	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00510000049558 #36	ENSGT00510000049389 #37
Long-tailed chinchilla	MODERN SPECIES	174	KCNAB3 (ENSCLAG00000007675)	RNF227 (ENSCLAG00000008516) #7	CHD3 (ENSCLAG00000010523) #8	CYB5D1 (ENSCLAG00000016495) #10	NAA38 (ENSCLAG00000015879) #11	TMEM88 (ENSCLAG00000006940) #12	KDM6B (ENSCLAG00000006879) #13	DNAH2 (ENSCLAG00000008437) #14	EFNB3 (ENSCLAG00000008030) #15	ENSCLAG00000008651 #16	TP53 (ENSCLAG00000007189) #17	ATP1B2 (ENSCLAG00000015532) #18	ENSCLAG00000016382	SAT2 (ENSCLAG00000006730) #20	FXR2 (ENSCLAG00000007322) #21	SOX15 (ENSCLAG00000007796) #22	MPDU1 (ENSCLAG00000009603) #23	CD68 (ENSCLAG00000011317)	ENSCLAG00000006786 ##25	SENP3 (ENSCLAG00000009353) #26	TNFSF13 (ENSCLAG00000009671) #27	TNFSF12 (ENSCLAG00000008538)	POLR2A (ENSCLAG00000012196) #28	ENSCLAG00000009172 #29	ZBTB4 (ENSCLAG00000011122) #30	CHRNB1 (ENSCLAG00000014488) #31	FGF11 (ENSCLAG00000015858) #32	TMEM102 (ENSCLAG00000013876) #34	SPEM2 (ENSCLAG00000008313) #36	SPEM1 (ENSCLAG00000008667) #37	NLGN2 (ENSCLAG00000014101)
Degu	MODERN SPECIES	139	KCNAB3 (ENSODEG00000017706)	RNF227 (ENSODEG00000017826) #7	CHD3 (ENSODEG00000017785) #8	CYB5D1 (ENSODEG00000017742) #10	NAA38 (ENSODEG00000017702) #11	TMEM88 (ENSODEG00000017852) #12	KDM6B (ENSODEG00000017794) #13	DNAH2 (ENSODEG00000017776) #14	EFNB3 (ENSODEG00000017671) #15	WRAP53 (ENSODEG00000017648) #16	TP53 (ENSODEG00000017683) #17	ATP1B2 (ENSODEG00000017782) #18	SHBG (ENSODEG00000017630) #19	ENSODEG00000017643 #20	FXR2 (ENSODEG00000017803) #21	SOX15 (ENSODEG00000017501) #22	MPDU1 (ENSODEG00000017856) #23	CD68 (ENSODEG00000017563)	EIF4A1 (ENSODEG00000017512) ##25	SENP3 (ENSODEG00000017615) #26	ENSODEG00000017544 #27	POLR2A (ENSODEG00000017674) #28	ENSODEG00000017743 #29	ENSODEG00000017609 #30	CHRNB1 (ENSODEG00000017475) #31	FGF11 (ENSODEG00000017497) #32	TMEM102 (ENSODEG00000017500) #34	SPEM2 (ENSODEG00000017647) #36	SPEM1 (ENSODEG00000017419) #37	NLGN2 (ENSODEG00000017940)	TMEM256 (ENSODEG00000017543)
Guinea pig	MODERN SPECIES	61	RNF227 (ENSCPOG00000027016) #7	CHD3 (ENSCPOG00000022653) #8	CYB5D1 (ENSCPOG00000004427) #10	NAA38 (ENSCPOG00000032412) #11	TMEM88 (ENSCPOG00000033148) #12	KDM6B (ENSCPOG00000004414) #13	DNAH2 (ENSCPOG00000004386) #14	EFNB3 (ENSCPOG00000022473) #15	WRAP53 (ENSCPOG00000002599) #16	TP53 (ENSCPOG00000014252) #17	ATP1B2 (ENSCPOG00000034285) #18	SHBG (ENSCPOG00000011310) #19	SAT2 (ENSCPOG00000031404) #20	FXR2 (ENSCPOG00000023303) #21	MPDU1 (ENSCPOG00000032454) #23	SOX15 (ENSCPOG00000004915) #22	CD68 (ENSCPOG00000004905)	EIF4A1 (ENSCPOG00000004900) #25	SENP3 (ENSCPOG00000004897) #26	TNFSF13 (ENSCPOG00000034597) #27	TNFSF12 (ENSCPOG00000004894)	POLR2A (ENSCPOG00000014812) #28	ENSCPOG00000014811 #29	ZBTB4 (ENSCPOG00000033470) #30	CHRNB1 (ENSCPOG00000014809) #31	FGF11 (ENSCPOG00000034488) #32	TMEM102 (ENSCPOG00000033790) #34	SPEM2 (ENSCPOG00000023905) #36	SPEM1 (ENSCPOG00000022568) #37	NLGN2 (ENSCPOG00000019317)	TMEM256 (ENSCPOG00000036227)
Naked mole-rat female	MODERN SPECIES	12	CNTROB (ENSHGLG00000016550)	TRAPPC1 (ENSHGLG00000035580)	KCNAB3 (ENSHGLG00000016886)	RNF227 (ENSHGLG00000045551) #7	CHD3 (ENSHGLG00000012017) #8	CYB5D1 (ENSHGLG00000010161) #10	NAA38 (ENSHGLG00000033435) #11	TMEM88 (ENSHGLG00000034924) #12	ENSHGLG00000038949 #13	WRAP53 (ENSHGLG00000014000) #16	Tp53 (ENSHGLG00000038082) #17	ENSHGLG00000011044 #18	ENSHGLG00000042748 #20	FXR2 (ENSHGLG00000012247) #21	ENSHGLG00000047155 #23	ENSHGLG00000047752 #22	ENSHGLG00000047031 #24	ENSHGLG00000033365 ##25	TNFSF13 (ENSHGLG00000010768) #27	TNFSF12 (ENSHGLG00000010122)	ENSHGLG00000011091 #29	ENSHGLG00000046218 #30	FGF11 (ENSHGLG00000042024) #32	ENSHGLG00000049999	SPEM2 (ENSHGLG00000009650) #36	NLGN2 (ENSHGLG00000041822)	TMEM256 (ENSHGLG00000018691)	PLSCR3 (ENSHGLG00000019015)	KCTD11 (ENSHGLG00000047152)	ENSHGLG00000018261	GPS2 (ENSHGLG00000011192)
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000159306	ENSGT00390000002475 #7	ENSGT00940000158001 #8	ENSGT00440000037582 #10	ENSGT00390000018418 #11	ENSGT00940000162021 #12	ENSGT00940000160414 #13	ENSGT00940000157623 #14	ENSGT00940000160323.b #15	ENSGT00390000010169 #16	ENSGT00950000183153.c.a #17	ENSGT01030000234579.A.a #18	ENSGT00940000154035.a #19	ENSGT00950000183121.b.a #20	ENSGT00950000183189.a.a #21	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b #25	ENSGT00940000156309.A #26	ENSGT00940000161488 #27	ENSGT00940000163167	ENSGT00940000153249.b.c #29	ENSGT00930000151033 #28	ENSGT00940000161268 #30	ENSGT00940000158661 #31	ENSGT00940000158058 #32	ENSGT01050000244976.b.b.b.a.a.a #34	ENSGT00510000049558 #36	ENSGT00510000049389 #37	ENSGT00940000160598
Rabbit	MODERN SPECIES	10	RNF227 (ENSOCUG00000017320) #7	CHD3 (ENSOCUG00000029299) #8	CYB5D1 (ENSOCUG00000017288) #10	NAA38 (ENSOCUG00000017284) #11	TMEM88 (ENSOCUG00000017280) #12	KDM6B (ENSOCUG00000017292) #13	DNAH2 (ENSOCUG00000012688) #14	EFNB3 (ENSOCUG00000002822) #15	WRAP53 (ENSOCUG00000025261) #16	TP53 (ENSOCUG00000001138) #17	ATP1B2 (ENSOCUG00000002988) #18	SHBG (ENSOCUG00000002566) #19	ENSOCUG00000002563 #20	FXR2 (ENSOCUG00000010393) #21	MPDU1 (ENSOCUG00000010389) #23	SOX15 (ENSOCUG00000001100) #22	CD68 (ENSOCUG00000010383)	EIF4A1 (ENSOCUG00000010375) #25	SENP3 (ENSOCUG00000017785) #26	TNFSF13 (ENSOCUG00000028216) #27	TNFSF12 (ENSOCUG00000037107)	ENSOCUG00000028180 #29	ZBTB4 (ENSOCUG00000007437) #30	CHRNB1 (ENSOCUG00000007433) #31	FGF11 (ENSOCUG00000004215) #32	TMEM102 (ENSOCUG00000004211) #34	SPEM2 (ENSOCUG00000005547) #36	SPEM1 (ENSOCUG00000005542) #37	NLGN2 (ENSOCUG00000005539)	ENSOCUG00000005534	PLSCR3 (ENSOCUG00000000983)
Pika	MODERN SPECIES	6372															FXR2 (ENSOPRG00000017108) #21	SOX15 (ENSOPRG00000017106) #22	ENSOPRG00000017101 #23
Tree shrew	MODERN SPECIES	8416																SOX15 (ENSTBEG00000009566) #22	MPDU1 (ENSTBEG00000009441) #23