Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Tree shrew	MODERN SPECIES	8416																SOX15 (ENSTBEG00000009566) #22	MPDU1 (ENSTBEG00000009441) #23
Glires	ANCESTRAL SPECIES	3	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00940000153249.b.c	ENSGT00930000151033	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00510000049558	ENSGT00510000049389	ENSGT00940000160598
Rabbit	MODERN SPECIES	10	RNF227 (ENSOCUG00000017320)	CHD3 (ENSOCUG00000029299)	CYB5D1 (ENSOCUG00000017288)	NAA38 (ENSOCUG00000017284)	TMEM88 (ENSOCUG00000017280)	KDM6B (ENSOCUG00000017292)	DNAH2 (ENSOCUG00000012688)	EFNB3 (ENSOCUG00000002822)	WRAP53 (ENSOCUG00000025261)	TP53 (ENSOCUG00000001138)	ATP1B2 (ENSOCUG00000002988)	SHBG (ENSOCUG00000002566)	ENSOCUG00000002563	FXR2 (ENSOCUG00000010393)	MPDU1 (ENSOCUG00000010389) #23	SOX15 (ENSOCUG00000001100) #22	CD68 (ENSOCUG00000010383)	EIF4A1 (ENSOCUG00000010375)	SENP3 (ENSOCUG00000017785)	TNFSF13 (ENSOCUG00000028216)	TNFSF12 (ENSOCUG00000037107)	ENSOCUG00000028180	ZBTB4 (ENSOCUG00000007437)	CHRNB1 (ENSOCUG00000007433)	FGF11 (ENSOCUG00000004215)	TMEM102 (ENSOCUG00000004211)	SPEM2 (ENSOCUG00000005547)	SPEM1 (ENSOCUG00000005542)	NLGN2 (ENSOCUG00000005539)	ENSOCUG00000005534	PLSCR3 (ENSOCUG00000000983)
Pika	MODERN SPECIES	6372															FXR2 (ENSOPRG00000017108)	SOX15 (ENSOPRG00000017106) #22	ENSOPRG00000017101 #23
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Muroidea	ANCESTRAL SPECIES		ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.a.a	ENSGT00940000164775	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00950000183608
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.a.a	ENSGT00940000164775	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a
Prairie vole	MODERN SPECIES	15	Rnf227 (ENSMOCG00000013838)	Chd3 (ENSMOCG00000004848)	ENSMOCG00000020842	Cyb5d1 (ENSMOCG00000016201)	Naa38 (ENSMOCG00000002129)	Tmem88 (ENSMOCG00000001201)	Kdm6b (ENSMOCG00000009811)	Dnah2 (ENSMOCG00000003037)	Efnb3 (ENSMOCG00000006928)	Wrap53 (ENSMOCG00000015971)	Trp53 (ENSMOCG00000020008)	Atp1b2 (ENSMOCG00000009972)	Shbg (ENSMOCG00000013734)	Sat2 (ENSMOCG00000020053)	Fxr2 (ENSMOCG00000019049)	Sox15 (ENSMOCG00000001244) #22	ENSMOCG00000019979 #23	Cd68 (ENSMOCG00000011137)	Eif4a1 (ENSMOCG00000007064)	Senp3 (ENSMOCG00000017728)	ENSMOCG00000022801	Polr2a (ENSMOCG00000018279)	Slc35g3 (ENSMOCG00000010288)	ENSMOCG00000019073	Chrnb1 (ENSMOCG00000022627)	Fgf11 (ENSMOCG00000021518)	ENSMOCG00000016882	Tmem102 (ENSMOCG00000016206)	Spem3 (ENSMOCG00000022965)	Spem2 (ENSMOCG00000017128)	Spem1 (ENSMOCG00000006619)
Northern American deer mouse	MODERN SPECIES	21	Kcnab3 (ENSPEMG00000012211)	ENSPEMG00000029356	Chd3 (ENSPEMG00000014262)	Cyb5d1 (ENSPEMG00000027957)	Naa38 (ENSPEMG00000015014)	Tmem88 (ENSPEMG00000025255)	Kdm6b (ENSPEMG00000010257)	Dnah2 (ENSPEMG00000004906)	Efnb3 (ENSPEMG00000029907)	Wrap53 (ENSPEMG00000009467)	ENSPEMG00000011289	Atp1b2 (ENSPEMG00000009297)	Shbg (ENSPEMG00000008069)	Sat2 (ENSPEMG00000019261)	Fxr2 (ENSPEMG00000019239)	Sox15 (ENSPEMG00000019249) #22	Mpdu1 (ENSPEMG00000019060) #23	ENSPEMG00000012269	Eif4a1 (ENSPEMG00000009100)	Senp3 (ENSPEMG00000019189)	Tnfsf13 (ENSPEMG00000019217)	Tnfsf12 (ENSPEMG00000024526)	Polr2a (ENSPEMG00000012521)	Slc35g3 (ENSPEMG00000012096)	Zbtb4 (ENSPEMG00000030856)	Chrnb1 (ENSPEMG00000016983)	Fgf11 (ENSPEMG00000026103)	Tmem102 (ENSPEMG00000018682)	ENSPEMG00000027133	Spem2 (ENSPEMG00000001259)	Spem1 (ENSPEMG00000010523)
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.b.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00950000183608	ENSGT00940000164517
Chinese hamster chok1gshd	MODERN SPECIES	229	Rnf227 (ENSCGRG00001005462)	Chd3 (ENSCGRG00001011306)	ENSCGRG00001023929	Cyb5d1 (ENSCGRG00001015505)	Naa38 (ENSCGRG00001016403)	Tmem88 (ENSCGRG00001018524)	Kdm6b (ENSCGRG00001023895)	Dnah2 (ENSCGRG00001023725)	Efnb3 (ENSCGRG00001004575)	Wrap53 (ENSCGRG00001009844)	Trp53 (ENSCGRG00001012952)	Atp1b2 (ENSCGRG00001016825)	Shbg (ENSCGRG00001024732)	Sat2 (ENSCGRG00001024470)	Fxr2 (ENSCGRG00001000488)	Sox15 (ENSCGRG00001006850) #22	Lec35 (ENSCGRG00001008612) #23	ENSCGRG00001006775	Eif4a1 (ENSCGRG00001009326)	Senp3 (ENSCGRG00001001055)	Tnfsf13 (ENSCGRG00001000520)	Tnfsf12 (ENSCGRG00001001875)	Polr2a (ENSCGRG00001003538)	Slc35g3 (ENSCGRG00001010297)	Zbtb4 (ENSCGRG00001020458)	Chrnb1 (ENSCGRG00001021737)	Fgf11 (ENSCGRG00001016734)	Tmem102 (ENSCGRG00001018840)	ENSCGRG00001022749	Spem3 (ENSCGRG00001023786)	Spem2 (ENSCGRG00001024800)
Murinae	ANCESTRAL SPECIES	7	ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775	ENSGT00940000153889.e.a.b.b	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.a.a	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00950000183608
Mus	ANCESTRAL SPECIES	2	ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558	ENSGT00510000049389
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558	ENSGT00510000049389
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558	ENSGT00510000049389
Mouse	MODERN SPECIES	2	Kcnab3 (ENSMUSG00000018470)	Rnf227 (ENSMUSG00000043419)	Chd3 (ENSMUSG00000018474)	Cyb5d1 (ENSMUSG00000044795)	Naa38 (ENSMUSG00000059278)	Tmem88 (ENSMUSG00000045377)	Kdm6b (ENSMUSG00000018476)	Dnah2 (ENSMUSG00000005237)	Efnb3 (ENSMUSG00000003934)	Wrap53 (ENSMUSG00000041346)	Trp53 (ENSMUSG00000059552)	Atp1b2 (ENSMUSG00000041329)	Shbg (ENSMUSG00000005202)	Sat2 (ENSMUSG00000069835)	Fxr2 (ENSMUSG00000018765)	Sox15 (ENSMUSG00000041287) #22	Mpdu1 (ENSMUSG00000018761) #23	Cd68 (ENSMUSG00000018774)	Eif4a1 (ENSMUSG00000059796)	Senp3 (ENSMUSG00000005204)	Tnfsfm13 (ENSMUSG00000018752)	Tnfsf13 (ENSMUSG00000089669)	Tnfsf12 (ENSMUSG00000097328)	Polr2a (ENSMUSG00000005198)	Slc35g3 (ENSMUSG00000018776)	Zbtb4 (ENSMUSG00000018750)	Chrnb1 (ENSMUSG00000041189)	Fgf11 (ENSMUSG00000042826)	Tmem102 (ENSMUSG00000089876)	Spem3 (ENSMUSG00000109737)	Spem2 (ENSMUSG00000044084)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000002475	ENSGT00940000158001	ENSGT00860000136019	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00940000164775	ENSGT00940000153889.e.a.b.a.a	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558	ENSGT00510000049389
spretus	MODERN SPECIES	2	Chd3 (MGP_SPRETEiJ_G0017400)	MGP_SPRETEiJ_G0017401	MGP_SPRETEiJ_G0017402	MGP_SPRETEiJ_G0017403	Naa38 (MGP_SPRETEiJ_G0017404)	Tmem88 (MGP_SPRETEiJ_G0017405)	Kdm6b (MGP_SPRETEiJ_G0017406)	Dnah2 (MGP_SPRETEiJ_G0017407)	Efnb3 (MGP_SPRETEiJ_G0017408)	Wrap53 (MGP_SPRETEiJ_G0017409)	Trp53 (MGP_SPRETEiJ_G0017410)	Atp1b2 (MGP_SPRETEiJ_G0017411)	Shbg (MGP_SPRETEiJ_G0017412)	Sat2 (MGP_SPRETEiJ_G0017413)	Fxr2 (MGP_SPRETEiJ_G0017414)	Sox15 (MGP_SPRETEiJ_G0017415) #22	Mpdu1 (MGP_SPRETEiJ_G0017416) #23	Cd68 (MGP_SPRETEiJ_G0017417)	MGP_SPRETEiJ_G0017418	Senp3 (MGP_SPRETEiJ_G0017419)	MGP_SPRETEiJ_G0017420	Tnfsf13 (MGP_SPRETEiJ_G0017421)	Tnfsf12 (MGP_SPRETEiJ_G0017422)	Polr2a (MGP_SPRETEiJ_G0017423)	Slc35g3 (MGP_SPRETEiJ_G0017424)	Zbtb4 (MGP_SPRETEiJ_G0017425)	Chrnb1 (MGP_SPRETEiJ_G0017426)	Fgf11 (MGP_SPRETEiJ_G0017427)	Tmem102 (MGP_SPRETEiJ_G0017428)	Spem2 (MGP_SPRETEiJ_G0017429)	Spem1 (MGP_SPRETEiJ_G0017430)
Steppe mouse	MODERN SPECIES	2607	Kcnab3 (ENSMSIG00000026433)	Rnf227 (ENSMSIG00000026421)	Chd3 (ENSMSIG00000026278)	Cyb5d1 (ENSMSIG00000026258)	Naa38 (ENSMSIG00000026252)	Tmem88 (ENSMSIG00000026250)	Kdm6b (ENSMSIG00000026234)	Dnah2 (ENSMSIG00000026044)	Efnb3 (ENSMSIG00000026027)	Wrap53 (ENSMSIG00000026006)	ENSMSIG00000025886	Atp1b2 (ENSMSIG00000025884)	Shbg (ENSMSIG00000025876)	ENSMSIG00000025872	Fxr2 (ENSMSIG00000025838)	Sox15 (ENSMSIG00000025831) #22	Mpdu1 (ENSMSIG00000025820) #23	Cd68 (ENSMSIG00000025801)	ENSMSIG00000025748	Senp3 (ENSMSIG00000025720)	ENSMSIG00000025651	Polr2a (ENSMSIG00000025463)	Slc35g3 (ENSMSIG00000025457)	Zbtb4 (ENSMSIG00000025449)	Chrnb1 (ENSMSIG00000025437)	Fgf11 (ENSMSIG00000025425)	Tmem102 (ENSMSIG00000025413)	Spem3 (ENSMSIG00000025405)	Spem2 (ENSMSIG00000025397)	Spem1 (ENSMSIG00000025386)	Nlgn2 (ENSMSIG00000025351)
Ryukyu mouse	MODERN SPECIES	2	Chd3 (MGP_CAROLIEiJ_G0016564)	MGP_CAROLIEiJ_G0016565	MGP_CAROLIEiJ_G0016566	MGP_CAROLIEiJ_G0016567	Naa38 (MGP_CAROLIEiJ_G0016568)	Tmem88 (MGP_CAROLIEiJ_G0016569)	Kdm6b (MGP_CAROLIEiJ_G0016570)	Dnah2 (MGP_CAROLIEiJ_G0016571)	Efnb3 (MGP_CAROLIEiJ_G0016572)	Wrap53 (MGP_CAROLIEiJ_G0016573)	Trp53 (MGP_CAROLIEiJ_G0016574)	Atp1b2 (MGP_CAROLIEiJ_G0016575)	Shbg (MGP_CAROLIEiJ_G0016576)	Sat2 (MGP_CAROLIEiJ_G0016577)	Fxr2 (MGP_CAROLIEiJ_G0016578)	Sox15 (MGP_CAROLIEiJ_G0016579) #22	Mpdu1 (MGP_CAROLIEiJ_G0016580) #23	Cd68 (MGP_CAROLIEiJ_G0016581)	MGP_CAROLIEiJ_G0016582	Senp3 (MGP_CAROLIEiJ_G0016583)	MGP_CAROLIEiJ_G0016584	Tnfsf13 (MGP_CAROLIEiJ_G0016585)	Tnfsf12 (MGP_CAROLIEiJ_G0016586)	Polr2a (MGP_CAROLIEiJ_G0016587)	Slc35g3 (MGP_CAROLIEiJ_G0016588)	Zbtb4 (MGP_CAROLIEiJ_G0016589)	Chrnb1 (MGP_CAROLIEiJ_G0016590)	Fgf11 (MGP_CAROLIEiJ_G0016591)	Tmem102 (MGP_CAROLIEiJ_G0016592)	Spem2 (MGP_CAROLIEiJ_G0016593)	Spem1 (MGP_CAROLIEiJ_G0016594)
Shrew mouse	MODERN SPECIES	5	Chd3 (MGP_PahariEiJ_G0017695)	MGP_PahariEiJ_G0017696	MGP_PahariEiJ_G0017697	MGP_PahariEiJ_G0017698	Naa38 (MGP_PahariEiJ_G0017699)	Tmem88 (MGP_PahariEiJ_G0017700)	Kdm6b (MGP_PahariEiJ_G0017701)	Dnah2 (MGP_PahariEiJ_G0017702)	Efnb3 (MGP_PahariEiJ_G0017703)	Wrap53 (MGP_PahariEiJ_G0017704)	Trp53 (MGP_PahariEiJ_G0017705)	Atp1b2 (MGP_PahariEiJ_G0017706)	MGP_PahariEiJ_G0017707	Sat2 (MGP_PahariEiJ_G0017708)	Fxr2 (MGP_PahariEiJ_G0017709)	Sox15 (MGP_PahariEiJ_G0017710) #22	Mpdu1 (MGP_PahariEiJ_G0017711) #23	Cd68 (MGP_PahariEiJ_G0017712)	MGP_PahariEiJ_G0017713	Senp3 (MGP_PahariEiJ_G0017714)	MGP_PahariEiJ_G0017715	Tnfsf13 (MGP_PahariEiJ_G0017716)	Tnfsf12 (MGP_PahariEiJ_G0017717)	Polr2a (MGP_PahariEiJ_G0017718)	Slc35g3 (MGP_PahariEiJ_G0017719)	Zbtb4 (MGP_PahariEiJ_G0017720)	Chrnb1 (MGP_PahariEiJ_G0017721)	Fgf11 (MGP_PahariEiJ_G0017722)	Tmem102 (MGP_PahariEiJ_G0017723)	Spem2 (MGP_PahariEiJ_G0017724)	Spem1 (MGP_PahariEiJ_G0017725)
Rat	MODERN SPECIES	1	Kcnab3 (ENSRNOG00000008480)	Rnf227 (ENSRNOG00000021540)	Chd3 (ENSRNOG00000009722)	Cyb5d1 (ENSRNOG00000066275)	Naa38 (ENSRNOG00000009823)	Tmem88 (ENSRNOG00000009870)	Kdm6b (ENSRNOG00000037613)	Dnah2 (ENSRNOG00000052688)	Efnb3 (ENSRNOG00000010320)	Wrap53 (ENSRNOG00000010520)	Tp53 (ENSRNOG00000010756)	Atp1b2 (ENSRNOG00000011227)	Shbg (ENSRNOG00000011357)	Sat2 (ENSRNOG00000011714)	Fxr2 (ENSRNOG00000011876)	Sox15 (ENSRNOG00000012155) #22	Mpdu1 (ENSRNOG00000012162) #23	Cd68 (ENSRNOG00000037563)	Eif4a1 (ENSRNOG00000030628)	Senp3 (ENSRNOG00000013746)	Tnfsf13 (ENSRNOG00000014171)	Tnfsf12 (ENSRNOG00000045670)	Polr2a (ENSRNOG00000028834)	Slc35g3 (ENSRNOG00000014519)	Zbtb4 (ENSRNOG00000014689)	Chrnb1 (ENSRNOG00000014698)	Fgf11 (ENSRNOG00000014882)	Tmem102 (ENSRNOG00000015057)	ENSRNOG00000064962	Spem3 (ENSRNOG00000069891)	Spem2 (ENSRNOG00000058939)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1746	Kcnab3 (ENSNGAG00000020938)	Rnf227 (ENSNGAG00000021827)	Chd3 (ENSNGAG00000000773)	ENSNGAG00000012476	Cyb5d1 (ENSNGAG00000017998)	Naa38 (ENSNGAG00000019042)	Tmem88 (ENSNGAG00000019276)	Kdm6b (ENSNGAG00000002609)	Dnah2 (ENSNGAG00000015592)	Efnb3 (ENSNGAG00000000608)	Wrap53 (ENSNGAG00000001849)	Tp53 (ENSNGAG00000010608)	Atp1b2 (ENSNGAG00000011555)	Sat2 (ENSNGAG00000014713)	Fxr2 (ENSNGAG00000016236)	Sox15 (ENSNGAG00000001407) #22	Mpdu1 (ENSNGAG00000002289) #23	ENSNGAG00000017735	Eif4a1 (ENSNGAG00000018330)	Senp3 (ENSNGAG00000019462)	ENSNGAG00000021296	Polr2a (ENSNGAG00000002543)	Slc35g3 (ENSNGAG00000015839)	Zbtb4 (ENSNGAG00000016971)	Chrnb1 (ENSNGAG00000018008)	Fgf11 (ENSNGAG00000018287)	Tmem102 (ENSNGAG00000018630)	Spem3 (ENSNGAG00000019102)	Spem2 (ENSNGAG00000020043)	Spem1 (ENSNGAG00000005715)	Nlgn2 (ENSNGAG00000009216)
Lesser Egyptian jerboa	MODERN SPECIES	168	Trappc1 (ENSJJAG00000000666)	Kcnab3 (ENSJJAG00000007965)	Chd3 (ENSJJAG00000017633)	Cyb5d1 (ENSJJAG00000012580)	Naa38 (ENSJJAG00000013236)	Tmem88 (ENSJJAG00000013316)	ENSJJAG00000014228	Dnah2 (ENSJJAG00000019886)	Efnb3 (ENSJJAG00000011348)	Wrap53 (ENSJJAG00000011669)	Trp53 (ENSJJAG00000012331)	Atp1b2 (ENSJJAG00000013283)	Shbg (ENSJJAG00000014834)	Sat2 (ENSJJAG00000015219)	Fxr2 (ENSJJAG00000016434)	Sox15 (ENSJJAG00000016980) #22	Mpdu1 (ENSJJAG00000020318) #23	ENSJJAG00000022204	Eif4a1 (ENSJJAG00000022783)	ENSJJAG00000000114	ENSJJAG00000006459	Polr2a (ENSJJAG00000013049)	Slc35g3 (ENSJJAG00000015077)	ENSJJAG00000015430	Chrnb1 (ENSJJAG00000015708)	ENSJJAG00000015954	Tmem102 (ENSJJAG00000016211)	Spem2 (ENSJJAG00000016321)	Spem1 (ENSJJAG00000016635)	Nlgn2 (ENSJJAG00000020774)	Tmem256 (ENSJJAG00000020908)
Kangaroo rat	MODERN SPECIES	338	Kcnab3 (ENSDORG00000010720)	Rnf227 (ENSDORG00000010719)	Chd3 (ENSDORG00000010713)	Cyb5d1 (ENSDORG00000023948)	Naa38 (ENSDORG00000010169)	Tmem88 (ENSDORG00000025174)	Kdm6b (ENSDORG00000010167)	Dnah2 (ENSDORG00000008370)	Efnb3 (ENSDORG00000026303)	Wrap53 (ENSDORG00000008488)	Trp53 (ENSDORG00000026783)	Atp1b2 (ENSDORG00000025939)	ENSDORG00000029595	Sat2 (ENSDORG00000029725)	Fxr2 (ENSDORG00000014232)	Sox15 (ENSDORG00000014230) #22	Mpdu1 (ENSDORG00000014229) #23	ENSDORG00000014227	Eif4a1 (ENSDORG00000014225)	Senp3 (ENSDORG00000014223)	ENSDORG00000014221	Polr2a (ENSDORG00000008667)	Slc35g3 (ENSDORG00000028094)	ENSDORG00000026747	Chrnb1 (ENSDORG00000008663)	Fgf11 (ENSDORG00000008661)	Tmem102 (ENSDORG00000008659)	Spem2 (ENSDORG00000008657)	Spem1 (ENSDORG00000008656)	Nlgn2 (ENSDORG00000008653)	Neurl4 (ENSDORG00000000321)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Marmotini	ANCESTRAL SPECIES	42	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517	ENSGT00510000049558
Marmotini_b	ANCESTRAL SPECIES	35	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.a	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT00950000183608	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000164517
Squirrel	MODERN SPECIES	195	RNF227 (ENSSTOG00000026440)	CHD3 (ENSSTOG00000025907)	CYB5D1 (ENSSTOG00000001060)	TMEM88 (ENSSTOG00000001057)	NAA38 (ENSSTOG00000025950)	KDM6B (ENSSTOG00000019400)	DNAH2 (ENSSTOG00000002487)	EFNB3 (ENSSTOG00000029036)	WRAP53 (ENSSTOG00000002484)	TP53 (ENSSTOG00000022774)	ATP1B2 (ENSSTOG00000019448)	SHBG (ENSSTOG00000029233)	SAT2 (ENSSTOG00000005681)	FXR2 (ENSSTOG00000005657)	MPDU1 (ENSSTOG00000005636) #23	SOX15 (ENSSTOG00000005654) #22	EIF4A1 (ENSSTOG00000024814)	SENP3 (ENSSTOG00000001835)	TNFSF13 (ENSSTOG00000034739)	TNFSF12 (ENSSTOG00000005614)	POLR2A (ENSSTOG00000001304)	ENSSTOG00000022540	ENSSTOG00000000346	CHRNB1 (ENSSTOG00000000341)	FGF11 (ENSSTOG00000000339)	TMEM102 (ENSSTOG00000000338)	SPEM3 (ENSSTOG00000033242)	SPEM2 (ENSSTOG00000030621)	SPEM1 (ENSSTOG00000031005)	NLGN2 (ENSSTOG00000000335)	TMEM256 (ENSSTOG00000007712)
Arctic ground squirrel	MODERN SPECIES	77	TRAPPC1 (ENSUPAG00010016002)	KCNAB3 (ENSUPAG00010015981)	CHD3 (ENSUPAG00010015846)	CYB5D1 (ENSUPAG00010015824)	NAA38 (ENSUPAG00010015814)	TMEM88 (ENSUPAG00010015803)	KDM6B (ENSUPAG00010015706)	DNAH2 (ENSUPAG00010015485)	EFNB3 (ENSUPAG00010015466)	WRAP53 (ENSUPAG00010015444)	TP53 (ENSUPAG00010015398)	ATP1B2 (ENSUPAG00010015380)	SHBG (ENSUPAG00010015369)	SAT2 (ENSUPAG00010015359)	FXR2 (ENSUPAG00010015345)	SOX15 (ENSUPAG00010015340) #22	MPDU1 (ENSUPAG00010015329) #23	CD68 (ENSUPAG00010015311)	ENSUPAG00010015286	SENP3 (ENSUPAG00010015274)	TNFSF13 (ENSUPAG00010015271)	TNFSF12 (ENSUPAG00010015258)	POLR2A (ENSUPAG00010015140)	ENSUPAG00010015133	ZBTB4 (ENSUPAG00010015112)	CHRNB1 (ENSUPAG00010015072)	FGF11 (ENSUPAG00010015051)	ENSUPAG00010015030	TMEM102 (ENSUPAG00010015024)	ENSUPAG00010014988	NLGN2 (ENSUPAG00010014953)
Alpin marmot	MODERN SPECIES	92	CNTROB (ENSMMMG00000020034)	TRAPPC1 (ENSMMMG00000020030)	KCNAB3 (ENSMMMG00000020007)	CHD3 (ENSMMMG00000019936)	CYB5D1 (ENSMMMG00000019930)	NAA38 (ENSMMMG00000019920)	TMEM88 (ENSMMMG00000019917)	KDM6B (ENSMMMG00000019902)	EFNB3 (ENSMMMG00000019770)	WRAP53 (ENSMMMG00000019760)	TP53 (ENSMMMG00000019747)	ATP1B2 (ENSMMMG00000019742)	SHBG (ENSMMMG00000019737)	SAT2 (ENSMMMG00000019728)	FXR2 (ENSMMMG00000019720)	SOX15 (ENSMMMG00000019717) #22	MPDU1 (ENSMMMG00000019711) #23	CD68 (ENSMMMG00000019708)	EIF4A1 (ENSMMMG00000019682)	SENP3 (ENSMMMG00000019674)	TNFSF13 (ENSMMMG00000019673)	TNFSF12 (ENSMMMG00000019660)	POLR2A (ENSMMMG00000019616)	ENSMMMG00000019610	ZBTB4 (ENSMMMG00000019607)	CHRNB1 (ENSMMMG00000019597)	FGF11 (ENSMMMG00000019583)	ENSMMMG00000019577	SPEM2 (ENSMMMG00000019557)	SPEM1 (ENSMMMG00000019555)	NLGN2 (ENSMMMG00000019538)
Eurasian red squirrel	MODERN SPECIES	12	TRAPPC1 (ENSSVLG00005013628)	KCNAB3 (ENSSVLG00005013744)	RNF227 (ENSSVLG00005013817)	CHD3 (ENSSVLG00005013898)	CYB5D1 (ENSSVLG00005013988)	NAA38 (ENSSVLG00005014059)	TMEM88 (ENSSVLG00005014138)	KDM6B (ENSSVLG00005014210)	EFNB3 (ENSSVLG00005015242)	WRAP53 (ENSSVLG00005015335)	TP53 (ENSSVLG00005015536)	ATP1B2 (ENSSVLG00005015878)	SHBG (ENSSVLG00005015979)	SAT2 (ENSSVLG00005016345)	FXR2 (ENSSVLG00005016396)	SOX15 (ENSSVLG00005016448) #22	MPDU1 (ENSSVLG00005016491) #23	CD68 (ENSSVLG00005016549)	EIF4A1 (ENSSVLG00005016680)	SENP3 (ENSSVLG00005017018)	ENSSVLG00005017113	POLR2A (ENSSVLG00005017374)	ENSSVLG00005006468	ZBTB4 (ENSSVLG00005006487)	CHRNB1 (ENSSVLG00005006512)	ENSSVLG00005006577	TMEM102 (ENSSVLG00005006623)	SPEM2 (ENSSVLG00005006720)	SPEM1 (ENSSVLG00005006743)	NLGN2 (ENSSVLG00005006780)	TMEM256 (ENSSVLG00005006818)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00510000049558	ENSGT00510000049389	ENSGT00940000160598
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.b.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00510000049558	ENSGT00510000049389	ENSGT00940000160598
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a	ENSGT00940000154035.a	ENSGT00950000183121.b.a	ENSGT00950000183189.a.a	ENSGT00940000162099 #22	ENSGT00940000153916.A #23	ENSGT00950000182899.C.b	ENSGT00940000153889.e.a.a	ENSGT00940000153889.e.a.b.a.b	ENSGT00940000156309.A	ENSGT00940000161488	ENSGT00940000163167	ENSGT00930000151033	ENSGT00940000153249.b.c	ENSGT00940000161268	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00510000049558	ENSGT00510000049389
Long-tailed chinchilla	MODERN SPECIES	174	KCNAB3 (ENSCLAG00000007675)	RNF227 (ENSCLAG00000008516)	CHD3 (ENSCLAG00000010523)	CYB5D1 (ENSCLAG00000016495)	NAA38 (ENSCLAG00000015879)	TMEM88 (ENSCLAG00000006940)	KDM6B (ENSCLAG00000006879)	DNAH2 (ENSCLAG00000008437)	EFNB3 (ENSCLAG00000008030)	ENSCLAG00000008651	TP53 (ENSCLAG00000007189)	ATP1B2 (ENSCLAG00000015532)	ENSCLAG00000016382	SAT2 (ENSCLAG00000006730)	FXR2 (ENSCLAG00000007322)	SOX15 (ENSCLAG00000007796) #22	MPDU1 (ENSCLAG00000009603) #23	CD68 (ENSCLAG00000011317)	ENSCLAG00000006786	SENP3 (ENSCLAG00000009353)	TNFSF13 (ENSCLAG00000009671)	TNFSF12 (ENSCLAG00000008538)	POLR2A (ENSCLAG00000012196)	ENSCLAG00000009172	ZBTB4 (ENSCLAG00000011122)	CHRNB1 (ENSCLAG00000014488)	FGF11 (ENSCLAG00000015858)	TMEM102 (ENSCLAG00000013876)	SPEM2 (ENSCLAG00000008313)	SPEM1 (ENSCLAG00000008667)	NLGN2 (ENSCLAG00000014101)
Degu	MODERN SPECIES	139	KCNAB3 (ENSODEG00000017706)	RNF227 (ENSODEG00000017826)	CHD3 (ENSODEG00000017785)	CYB5D1 (ENSODEG00000017742)	NAA38 (ENSODEG00000017702)	TMEM88 (ENSODEG00000017852)	KDM6B (ENSODEG00000017794)	DNAH2 (ENSODEG00000017776)	EFNB3 (ENSODEG00000017671)	WRAP53 (ENSODEG00000017648)	TP53 (ENSODEG00000017683)	ATP1B2 (ENSODEG00000017782)	SHBG (ENSODEG00000017630)	ENSODEG00000017643	FXR2 (ENSODEG00000017803)	SOX15 (ENSODEG00000017501) #22	MPDU1 (ENSODEG00000017856) #23	CD68 (ENSODEG00000017563)	EIF4A1 (ENSODEG00000017512)	SENP3 (ENSODEG00000017615)	ENSODEG00000017544	POLR2A (ENSODEG00000017674)	ENSODEG00000017743	ENSODEG00000017609	CHRNB1 (ENSODEG00000017475)	FGF11 (ENSODEG00000017497)	TMEM102 (ENSODEG00000017500)	SPEM2 (ENSODEG00000017647)	SPEM1 (ENSODEG00000017419)	NLGN2 (ENSODEG00000017940)	TMEM256 (ENSODEG00000017543)
Guinea pig	MODERN SPECIES	61	RNF227 (ENSCPOG00000027016)	CHD3 (ENSCPOG00000022653)	CYB5D1 (ENSCPOG00000004427)	NAA38 (ENSCPOG00000032412)	TMEM88 (ENSCPOG00000033148)	KDM6B (ENSCPOG00000004414)	DNAH2 (ENSCPOG00000004386)	EFNB3 (ENSCPOG00000022473)	WRAP53 (ENSCPOG00000002599)	TP53 (ENSCPOG00000014252)	ATP1B2 (ENSCPOG00000034285)	SHBG (ENSCPOG00000011310)	SAT2 (ENSCPOG00000031404)	FXR2 (ENSCPOG00000023303)	MPDU1 (ENSCPOG00000032454) #23	SOX15 (ENSCPOG00000004915) #22	CD68 (ENSCPOG00000004905)	EIF4A1 (ENSCPOG00000004900)	SENP3 (ENSCPOG00000004897)	TNFSF13 (ENSCPOG00000034597)	TNFSF12 (ENSCPOG00000004894)	POLR2A (ENSCPOG00000014812)	ENSCPOG00000014811	ZBTB4 (ENSCPOG00000033470)	CHRNB1 (ENSCPOG00000014809)	FGF11 (ENSCPOG00000034488)	TMEM102 (ENSCPOG00000033790)	SPEM2 (ENSCPOG00000023905)	SPEM1 (ENSCPOG00000022568)	NLGN2 (ENSCPOG00000019317)	TMEM256 (ENSCPOG00000036227)
Naked mole-rat female	MODERN SPECIES	12	CNTROB (ENSHGLG00000016550)	TRAPPC1 (ENSHGLG00000035580)	KCNAB3 (ENSHGLG00000016886)	RNF227 (ENSHGLG00000045551)	CHD3 (ENSHGLG00000012017)	CYB5D1 (ENSHGLG00000010161)	NAA38 (ENSHGLG00000033435)	TMEM88 (ENSHGLG00000034924)	ENSHGLG00000038949	WRAP53 (ENSHGLG00000014000)	Tp53 (ENSHGLG00000038082)	ENSHGLG00000011044	ENSHGLG00000042748	FXR2 (ENSHGLG00000012247)	ENSHGLG00000047155 #23	ENSHGLG00000047752 #22	ENSHGLG00000047031	ENSHGLG00000033365	TNFSF13 (ENSHGLG00000010768)	TNFSF12 (ENSHGLG00000010122)	ENSHGLG00000011091	ENSHGLG00000046218	FGF11 (ENSHGLG00000042024)	ENSHGLG00000049999	SPEM2 (ENSHGLG00000009650)	NLGN2 (ENSHGLG00000041822)	TMEM256 (ENSHGLG00000018691)	PLSCR3 (ENSHGLG00000019015)	KCTD11 (ENSHGLG00000047152)	ENSHGLG00000018261	GPS2 (ENSHGLG00000011192)